Multiple sequence alignment - TraesCS7B01G137400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G137400 chr7B 100.000 5953 0 0 1 5953 169474055 169468103 0.000000e+00 10994.0
1 TraesCS7B01G137400 chr7D 95.177 3691 130 22 1929 5587 205150187 205146513 0.000000e+00 5786.0
2 TraesCS7B01G137400 chr7D 91.227 1915 115 25 32 1924 205152155 205150272 0.000000e+00 2556.0
3 TraesCS7B01G137400 chr7A 94.396 3319 97 31 2370 5635 217376681 217373399 0.000000e+00 5016.0
4 TraesCS7B01G137400 chr7A 89.959 2460 147 46 2 2399 217379102 217376681 0.000000e+00 3083.0
5 TraesCS7B01G137400 chr5B 82.162 185 21 9 497 670 690981307 690981124 1.340000e-31 148.0
6 TraesCS7B01G137400 chr5B 78.832 137 23 2 503 633 250541858 250541722 2.960000e-13 87.9
7 TraesCS7B01G137400 chr5A 79.532 171 24 7 503 663 663712220 663712389 1.750000e-20 111.0
8 TraesCS7B01G137400 chr4A 71.778 450 108 17 193 633 165707328 165707767 6.310000e-20 110.0
9 TraesCS7B01G137400 chr2A 80.952 147 20 3 512 650 622462489 622462343 6.310000e-20 110.0
10 TraesCS7B01G137400 chr4B 74.157 267 66 2 98 364 386227289 386227026 2.270000e-19 108.0
11 TraesCS7B01G137400 chr3A 75.391 256 44 9 425 662 735612371 735612625 8.160000e-19 106.0
12 TraesCS7B01G137400 chr3A 92.157 51 4 0 5621 5671 159417716 159417666 8.280000e-09 73.1
13 TraesCS7B01G137400 chr6B 90.141 71 7 0 5602 5672 563289039 563288969 6.350000e-15 93.5
14 TraesCS7B01G137400 chr3D 79.851 134 19 5 538 663 556021372 556021239 2.280000e-14 91.6
15 TraesCS7B01G137400 chr2D 78.000 150 21 5 512 650 480137790 480137642 3.820000e-12 84.2
16 TraesCS7B01G137400 chr2B 80.000 115 17 5 216 327 674796986 674796875 4.950000e-11 80.5
17 TraesCS7B01G137400 chr2B 100.000 30 0 0 5866 5895 422510429 422510458 8.330000e-04 56.5
18 TraesCS7B01G137400 chr1A 73.413 252 49 14 426 661 482257837 482258086 1.780000e-10 78.7
19 TraesCS7B01G137400 chr3B 94.286 35 2 0 426 460 795921231 795921265 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G137400 chr7B 169468103 169474055 5952 True 10994.0 10994 100.0000 1 5953 1 chr7B.!!$R1 5952
1 TraesCS7B01G137400 chr7D 205146513 205152155 5642 True 4171.0 5786 93.2020 32 5587 2 chr7D.!!$R1 5555
2 TraesCS7B01G137400 chr7A 217373399 217379102 5703 True 4049.5 5016 92.1775 2 5635 2 chr7A.!!$R1 5633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 310 0.036732 AGCATCGGTTTTGAGCTCCA 59.963 50.000 12.15 0.00 0.00 3.86 F
405 408 1.069227 GCGTCGCTGTTGGAGAATTTT 60.069 47.619 10.68 0.00 0.00 1.82 F
1623 1659 0.095417 CTTCCTTAAGCGCTTCGTGC 59.905 55.000 28.82 0.00 39.59 5.34 F
1702 1738 1.639298 AAGCGGAGATGCGTCTTTGC 61.639 55.000 19.95 19.95 40.67 3.68 F
2939 3148 1.961793 TGCTTTACGCCAGTGAAGTT 58.038 45.000 0.00 0.00 43.42 2.66 F
4472 4689 0.251077 CAACTGCTTCCAGGGCTCTT 60.251 55.000 0.00 0.00 43.53 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1535 0.597637 CGATCGGGACTCCAAATCCG 60.598 60.000 7.38 0.0 43.42 4.18 R
1872 1909 0.599204 AACCGTTAGGAGCACACACG 60.599 55.000 0.00 0.0 41.02 4.49 R
3193 3406 0.538057 TCTGCAGTGAAAGCAAGGGG 60.538 55.000 14.67 0.0 42.17 4.79 R
3699 3912 1.213678 CATCCCTGGAGAATGAGGCAA 59.786 52.381 0.00 0.0 0.00 4.52 R
4631 4848 0.952280 TATCACCGGCGTCTGAGATC 59.048 55.000 6.01 0.0 0.00 2.75 R
5866 6133 0.036022 TCATGTGGATGCGTGTGGAA 59.964 50.000 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 0.314302 CTCGAGTCGGTGTCCTTTGT 59.686 55.000 13.54 0.00 0.00 2.83
113 114 1.137513 CGAGTCGGTGTCCTTTGTTC 58.862 55.000 4.10 0.00 0.00 3.18
188 189 1.527034 GAGCATGGTCTTCACTTGCA 58.473 50.000 17.59 0.00 35.37 4.08
198 199 1.662629 CTTCACTTGCATAGCACCTCG 59.337 52.381 0.00 0.00 38.71 4.63
210 212 3.292936 ACCTCGCGTCAAGACCGT 61.293 61.111 5.77 0.00 0.00 4.83
215 217 3.712881 GCGTCAAGACCGTGGTGC 61.713 66.667 0.00 0.00 0.00 5.01
306 309 1.135575 CAAGCATCGGTTTTGAGCTCC 60.136 52.381 12.15 0.00 33.83 4.70
307 310 0.036732 AGCATCGGTTTTGAGCTCCA 59.963 50.000 12.15 0.00 0.00 3.86
327 330 4.352595 TCCAAGGTGAAAACCCAAGATCTA 59.647 41.667 0.00 0.00 0.00 1.98
342 345 1.207329 GATCTAGCCTTCGGTGGTTGT 59.793 52.381 0.00 0.00 0.00 3.32
350 353 2.028476 CCTTCGGTGGTTGTATCTGACA 60.028 50.000 0.00 0.00 35.78 3.58
379 382 3.252458 ACGCTTGATTGTTGTTCCCTTAC 59.748 43.478 0.00 0.00 0.00 2.34
380 383 3.502211 CGCTTGATTGTTGTTCCCTTACT 59.498 43.478 0.00 0.00 0.00 2.24
381 384 4.693566 CGCTTGATTGTTGTTCCCTTACTA 59.306 41.667 0.00 0.00 0.00 1.82
393 396 1.278238 CCTTACTAAAGGCGTCGCTG 58.722 55.000 18.11 5.32 45.78 5.18
405 408 1.069227 GCGTCGCTGTTGGAGAATTTT 60.069 47.619 10.68 0.00 0.00 1.82
455 458 3.847671 TGATTGGTGCGGATATGGTTA 57.152 42.857 0.00 0.00 0.00 2.85
478 485 8.687301 GTTATTGTTGTCGTCTTTTTACCATTG 58.313 33.333 0.00 0.00 0.00 2.82
480 487 6.922247 TGTTGTCGTCTTTTTACCATTGTA 57.078 33.333 0.00 0.00 0.00 2.41
485 492 7.577979 TGTCGTCTTTTTACCATTGTATTGAC 58.422 34.615 0.00 0.00 0.00 3.18
488 495 6.347888 CGTCTTTTTACCATTGTATTGACCGT 60.348 38.462 0.00 0.00 0.00 4.83
501 510 6.491394 TGTATTGACCGTTTCAGAGTTTTTG 58.509 36.000 0.00 0.00 34.94 2.44
549 558 6.694447 TCGGTATTGTTAGACTTTGCTAGTT 58.306 36.000 0.00 0.00 37.17 2.24
565 574 2.507339 AGTTGCCGGTGTGATTTTTG 57.493 45.000 1.90 0.00 0.00 2.44
573 582 3.562141 CCGGTGTGATTTTTGTGAGTGTA 59.438 43.478 0.00 0.00 0.00 2.90
594 603 2.505407 AGGTGTTGGCTATGTGCATCTA 59.495 45.455 0.00 0.00 45.15 1.98
606 615 6.809196 GCTATGTGCATCTAACCTATACAGAC 59.191 42.308 0.00 0.00 42.31 3.51
635 646 5.003804 GTGTCCTCATTGTGTTTGTATCCT 58.996 41.667 0.00 0.00 0.00 3.24
731 743 6.409524 ACCACAACAATCTTTCATTGACAT 57.590 33.333 1.36 0.00 33.51 3.06
859 878 6.408770 AATTTTCCTAGGATTCCTTCACCT 57.591 37.500 13.57 0.00 34.61 4.00
865 884 6.030082 TCCTAGGATTCCTTCACCTAAAAGT 58.970 40.000 11.25 0.00 36.12 2.66
1014 1045 5.435291 ACAAACCAAATGATGCAAAAAGGA 58.565 33.333 0.00 0.00 0.00 3.36
1024 1055 4.099881 TGATGCAAAAAGGAAAGCTCAAGT 59.900 37.500 0.00 0.00 0.00 3.16
1046 1077 5.227908 GTCTACAAGACGAGGAAACATCAA 58.772 41.667 0.00 0.00 35.28 2.57
1047 1078 5.694910 GTCTACAAGACGAGGAAACATCAAA 59.305 40.000 0.00 0.00 35.28 2.69
1502 1535 1.362355 CTTGGTGGTTTGTTCCGGC 59.638 57.895 0.00 0.00 0.00 6.13
1623 1659 0.095417 CTTCCTTAAGCGCTTCGTGC 59.905 55.000 28.82 0.00 39.59 5.34
1686 1722 6.128472 GGATTCCAATGTTGTTTGAATCAAGC 60.128 38.462 17.23 2.77 31.73 4.01
1702 1738 1.639298 AAGCGGAGATGCGTCTTTGC 61.639 55.000 19.95 19.95 40.67 3.68
1745 1781 6.594159 TCGAAATGAGAGGGATTTTACTTCAC 59.406 38.462 0.00 0.00 0.00 3.18
1748 1784 8.655935 AAATGAGAGGGATTTTACTTCACAAT 57.344 30.769 0.00 0.00 0.00 2.71
1845 1882 6.609237 TTTGCTCTTCTGGATCGATTATTG 57.391 37.500 0.00 0.00 0.00 1.90
1925 2046 6.726490 TTCTGTAAAGTGTTCTCTGGTAGT 57.274 37.500 0.00 0.00 0.00 2.73
1926 2047 7.828508 TTCTGTAAAGTGTTCTCTGGTAGTA 57.171 36.000 0.00 0.00 0.00 1.82
1927 2048 8.418597 TTCTGTAAAGTGTTCTCTGGTAGTAT 57.581 34.615 0.00 0.00 0.00 2.12
2019 2140 2.346803 GTGCAAGTAAGATCCTTCGCA 58.653 47.619 0.00 0.00 0.00 5.10
2155 2276 3.645212 TGATAGCTGGCTTGCTCTATCTT 59.355 43.478 19.35 0.00 42.97 2.40
2198 2334 4.128925 TCAGTCCAGCTTAACTGCTATG 57.871 45.455 16.94 0.00 45.78 2.23
2219 2355 3.649023 TGTTGGTTCCTTAAGCAGTAGGA 59.351 43.478 0.00 0.00 43.52 2.94
2251 2389 4.647564 ACTGGAGTTCAACATTCCTCAT 57.352 40.909 0.00 0.00 32.12 2.90
2252 2390 4.990526 ACTGGAGTTCAACATTCCTCATT 58.009 39.130 0.00 0.00 32.12 2.57
2305 2448 6.983906 ATTCCTCAAAAACATCTGGAGTTT 57.016 33.333 0.00 0.00 40.66 2.66
2330 2473 4.225942 ACTGAAGAGAGGTGCAATATGGAA 59.774 41.667 0.00 0.00 0.00 3.53
2557 2749 8.740123 TCCTTGACAAATTTGTAGTGTTTCTA 57.260 30.769 23.33 5.96 42.43 2.10
2592 2784 8.457238 AATTGAATCAGCCTTTAGTTCTATCC 57.543 34.615 0.00 0.00 0.00 2.59
2599 2791 2.434702 CCTTTAGTTCTATCCACCGGCT 59.565 50.000 0.00 0.00 0.00 5.52
2750 2948 9.947669 CTATTCTCAGAAATTGATTGTCATTCC 57.052 33.333 0.00 0.00 34.68 3.01
2751 2949 7.764141 TTCTCAGAAATTGATTGTCATTCCA 57.236 32.000 0.00 0.00 34.68 3.53
2760 2967 4.979335 TGATTGTCATTCCAGTGGTTACA 58.021 39.130 9.54 6.79 0.00 2.41
2885 3094 8.324306 TGAAGTATGATTATCTGATTCCATCCC 58.676 37.037 0.00 0.00 0.00 3.85
2939 3148 1.961793 TGCTTTACGCCAGTGAAGTT 58.038 45.000 0.00 0.00 43.42 2.66
2990 3203 6.958255 TCGTGGTGAAAATATGAGCATAATG 58.042 36.000 0.00 0.00 0.00 1.90
3000 3213 8.621532 AAATATGAGCATAATGGACGTGTAAT 57.378 30.769 0.00 0.00 0.00 1.89
3002 3215 8.932945 ATATGAGCATAATGGACGTGTAATAG 57.067 34.615 0.00 0.00 0.00 1.73
3028 3241 8.190784 GTCCAATAATGCAGTTTATTGTAGCTT 58.809 33.333 22.33 0.15 43.39 3.74
3029 3242 8.405531 TCCAATAATGCAGTTTATTGTAGCTTC 58.594 33.333 22.33 0.00 43.39 3.86
3067 3280 3.165071 CCTTTTGTGGAATAGCAAGGGT 58.835 45.455 0.00 0.00 0.00 4.34
3132 3345 6.777091 ACTAGCTGATCAGATCACTTGATACT 59.223 38.462 27.04 11.04 34.37 2.12
3142 3355 6.881065 CAGATCACTTGATACTGAGGGAAAAA 59.119 38.462 10.67 0.00 34.55 1.94
3193 3406 3.022607 ACTTGACAGCTACGTAACACC 57.977 47.619 0.00 0.00 0.00 4.16
3367 3580 4.101741 GTGGGCACTAGTCCTCATCTAAAT 59.898 45.833 0.00 0.00 41.31 1.40
3550 3763 2.983136 CAAGATGCATCCTACGATCGAC 59.017 50.000 24.34 2.45 0.00 4.20
3641 3854 7.254455 CCTTAGTGTTCGTAGATAAATTGCTGG 60.254 40.741 0.00 0.00 35.04 4.85
3642 3855 5.488341 AGTGTTCGTAGATAAATTGCTGGT 58.512 37.500 0.00 0.00 35.04 4.00
3664 3877 6.128418 TGGTTGAAGCTTTTAAAAACAAGTGC 60.128 34.615 0.00 1.08 0.00 4.40
3679 3892 9.476202 AAAAACAAGTGCTGGAGTATAATTTTC 57.524 29.630 0.00 0.00 0.00 2.29
3699 3912 2.644299 TCATTGGTGGATGAACTGGACT 59.356 45.455 0.00 0.00 33.31 3.85
3705 3918 1.003580 TGGATGAACTGGACTTGCCTC 59.996 52.381 0.00 0.00 37.63 4.70
3991 4207 9.865321 ATTATCCAGATTGATCACTTTGTTTTG 57.135 29.630 0.00 0.00 0.00 2.44
4082 4298 4.499865 GGAAGGGTTTTTGCTCTTCAAGAC 60.500 45.833 7.82 0.00 45.31 3.01
4118 4334 2.927028 AGGGTATGGTTGCCGAATAAC 58.073 47.619 0.00 0.00 0.00 1.89
4247 4463 8.492415 AGGATGAGTTTATAATACTAGCCACA 57.508 34.615 0.00 0.00 0.00 4.17
4412 4629 3.958147 AGGTTTGGGACGTTCTTTCAAAT 59.042 39.130 0.00 0.00 31.36 2.32
4472 4689 0.251077 CAACTGCTTCCAGGGCTCTT 60.251 55.000 0.00 0.00 43.53 2.85
4640 4857 3.626670 CCAAGGATGCTTTGATCTCAGAC 59.373 47.826 0.00 0.00 0.00 3.51
4791 5011 3.519913 ACCTCCTGTATCAAAGGAACCTC 59.480 47.826 0.00 0.00 43.27 3.85
5006 5229 2.054799 TGAAAGTCAGGTAGGGTGCTT 58.945 47.619 0.00 0.00 0.00 3.91
5117 5347 1.247567 GCTGGCAGGTGTGTACATTT 58.752 50.000 17.64 0.00 0.00 2.32
5163 5393 1.338674 TGTGGTATTTGTCAGGAGGCG 60.339 52.381 0.00 0.00 0.00 5.52
5253 5483 7.400339 TCTGTAAATCATGTAAGACCTCCTCTT 59.600 37.037 0.00 0.00 42.33 2.85
5282 5512 2.000447 GGATGTTCGGTTGTAGCTGTC 59.000 52.381 0.00 0.00 0.00 3.51
5393 5629 8.261492 TCTTCTCAAGATTATCACTTTCTTGC 57.739 34.615 6.95 0.00 43.78 4.01
5430 5678 5.419239 TTGAATTTGGCAGGAATTTAGGG 57.581 39.130 0.00 0.00 0.00 3.53
5431 5679 4.682563 TGAATTTGGCAGGAATTTAGGGA 58.317 39.130 0.00 0.00 0.00 4.20
5432 5680 5.090139 TGAATTTGGCAGGAATTTAGGGAA 58.910 37.500 0.00 0.00 0.00 3.97
5433 5681 5.545723 TGAATTTGGCAGGAATTTAGGGAAA 59.454 36.000 0.00 0.00 0.00 3.13
5434 5682 5.682234 ATTTGGCAGGAATTTAGGGAAAG 57.318 39.130 0.00 0.00 0.00 2.62
5435 5683 2.456577 TGGCAGGAATTTAGGGAAAGC 58.543 47.619 0.00 0.00 0.00 3.51
5436 5684 2.225242 TGGCAGGAATTTAGGGAAAGCA 60.225 45.455 0.00 0.00 0.00 3.91
5437 5685 2.831526 GGCAGGAATTTAGGGAAAGCAA 59.168 45.455 0.00 0.00 0.00 3.91
5438 5686 3.452264 GGCAGGAATTTAGGGAAAGCAAT 59.548 43.478 0.00 0.00 0.00 3.56
5439 5687 4.436332 GCAGGAATTTAGGGAAAGCAATG 58.564 43.478 0.00 0.00 0.00 2.82
5440 5688 4.681512 GCAGGAATTTAGGGAAAGCAATGG 60.682 45.833 0.00 0.00 0.00 3.16
5587 5854 2.092968 ACATAGTTCCACACGCATCCAT 60.093 45.455 0.00 0.00 0.00 3.41
5594 5861 4.350368 TCCACACGCATCCATAATGTAT 57.650 40.909 0.00 0.00 37.71 2.29
5615 5882 1.227527 TTGTCGCCAGTGTGTCCAG 60.228 57.895 0.00 0.00 0.00 3.86
5619 5886 2.828868 GCCAGTGTGTCCAGGACA 59.171 61.111 19.21 19.21 40.50 4.02
5620 5887 1.302033 GCCAGTGTGTCCAGGACAG 60.302 63.158 23.61 11.79 43.57 3.51
5635 5902 1.140816 GACAGTGTGTTCCTCGAAGC 58.859 55.000 0.00 0.00 0.00 3.86
5636 5903 0.753262 ACAGTGTGTTCCTCGAAGCT 59.247 50.000 0.00 0.00 0.00 3.74
5637 5904 1.143305 CAGTGTGTTCCTCGAAGCTG 58.857 55.000 0.00 0.00 0.00 4.24
5638 5905 1.040646 AGTGTGTTCCTCGAAGCTGA 58.959 50.000 0.00 0.00 0.00 4.26
5639 5906 1.620819 AGTGTGTTCCTCGAAGCTGAT 59.379 47.619 0.00 0.00 0.00 2.90
5640 5907 1.996191 GTGTGTTCCTCGAAGCTGATC 59.004 52.381 0.00 0.00 0.00 2.92
5641 5908 1.618343 TGTGTTCCTCGAAGCTGATCA 59.382 47.619 0.00 0.00 0.00 2.92
5642 5909 2.037121 TGTGTTCCTCGAAGCTGATCAA 59.963 45.455 0.00 0.00 0.00 2.57
5643 5910 2.670414 GTGTTCCTCGAAGCTGATCAAG 59.330 50.000 0.00 0.00 0.00 3.02
5644 5911 2.300152 TGTTCCTCGAAGCTGATCAAGT 59.700 45.455 0.00 0.00 0.00 3.16
5645 5912 2.926838 GTTCCTCGAAGCTGATCAAGTC 59.073 50.000 0.00 0.00 0.00 3.01
5646 5913 1.478510 TCCTCGAAGCTGATCAAGTCC 59.521 52.381 0.00 0.00 0.00 3.85
5647 5914 1.472376 CCTCGAAGCTGATCAAGTCCC 60.472 57.143 0.00 0.00 0.00 4.46
5648 5915 0.173481 TCGAAGCTGATCAAGTCCCG 59.827 55.000 0.00 0.00 0.00 5.14
5649 5916 0.108615 CGAAGCTGATCAAGTCCCGT 60.109 55.000 0.00 0.00 0.00 5.28
5650 5917 1.646189 GAAGCTGATCAAGTCCCGTC 58.354 55.000 0.00 0.00 0.00 4.79
5651 5918 0.976641 AAGCTGATCAAGTCCCGTCA 59.023 50.000 0.00 0.00 0.00 4.35
5652 5919 1.198713 AGCTGATCAAGTCCCGTCAT 58.801 50.000 0.00 0.00 0.00 3.06
5653 5920 1.137872 AGCTGATCAAGTCCCGTCATC 59.862 52.381 0.00 0.00 0.00 2.92
5654 5921 1.808133 GCTGATCAAGTCCCGTCATCC 60.808 57.143 0.00 0.00 0.00 3.51
5655 5922 1.482182 CTGATCAAGTCCCGTCATCCA 59.518 52.381 0.00 0.00 0.00 3.41
5656 5923 1.207089 TGATCAAGTCCCGTCATCCAC 59.793 52.381 0.00 0.00 0.00 4.02
5657 5924 1.482593 GATCAAGTCCCGTCATCCACT 59.517 52.381 0.00 0.00 0.00 4.00
5658 5925 1.348064 TCAAGTCCCGTCATCCACTT 58.652 50.000 0.00 0.00 0.00 3.16
5659 5926 1.001974 TCAAGTCCCGTCATCCACTTG 59.998 52.381 4.59 4.59 44.76 3.16
5660 5927 0.321653 AAGTCCCGTCATCCACTTGC 60.322 55.000 0.00 0.00 0.00 4.01
5661 5928 1.745489 GTCCCGTCATCCACTTGCC 60.745 63.158 0.00 0.00 0.00 4.52
5662 5929 2.220586 TCCCGTCATCCACTTGCCA 61.221 57.895 0.00 0.00 0.00 4.92
5663 5930 2.040544 CCCGTCATCCACTTGCCAC 61.041 63.158 0.00 0.00 0.00 5.01
5664 5931 2.040544 CCGTCATCCACTTGCCACC 61.041 63.158 0.00 0.00 0.00 4.61
5665 5932 1.003355 CGTCATCCACTTGCCACCT 60.003 57.895 0.00 0.00 0.00 4.00
5666 5933 1.021390 CGTCATCCACTTGCCACCTC 61.021 60.000 0.00 0.00 0.00 3.85
5667 5934 0.678048 GTCATCCACTTGCCACCTCC 60.678 60.000 0.00 0.00 0.00 4.30
5668 5935 0.842030 TCATCCACTTGCCACCTCCT 60.842 55.000 0.00 0.00 0.00 3.69
5669 5936 0.393537 CATCCACTTGCCACCTCCTC 60.394 60.000 0.00 0.00 0.00 3.71
5670 5937 0.548682 ATCCACTTGCCACCTCCTCT 60.549 55.000 0.00 0.00 0.00 3.69
5671 5938 1.194781 TCCACTTGCCACCTCCTCTC 61.195 60.000 0.00 0.00 0.00 3.20
5672 5939 1.197430 CCACTTGCCACCTCCTCTCT 61.197 60.000 0.00 0.00 0.00 3.10
5673 5940 0.689623 CACTTGCCACCTCCTCTCTT 59.310 55.000 0.00 0.00 0.00 2.85
5674 5941 1.072965 CACTTGCCACCTCCTCTCTTT 59.927 52.381 0.00 0.00 0.00 2.52
5675 5942 1.072965 ACTTGCCACCTCCTCTCTTTG 59.927 52.381 0.00 0.00 0.00 2.77
5676 5943 0.401738 TTGCCACCTCCTCTCTTTGG 59.598 55.000 0.00 0.00 0.00 3.28
5677 5944 0.473694 TGCCACCTCCTCTCTTTGGA 60.474 55.000 0.00 0.00 0.00 3.53
5685 5952 2.758736 CCTCTCTTTGGAGGTGTCTG 57.241 55.000 2.65 0.00 45.65 3.51
5686 5953 1.277557 CCTCTCTTTGGAGGTGTCTGG 59.722 57.143 2.65 0.00 45.65 3.86
5687 5954 0.687354 TCTCTTTGGAGGTGTCTGGC 59.313 55.000 0.00 0.00 39.86 4.85
5688 5955 0.671781 CTCTTTGGAGGTGTCTGGCG 60.672 60.000 0.00 0.00 36.03 5.69
5689 5956 1.071471 CTTTGGAGGTGTCTGGCGT 59.929 57.895 0.00 0.00 0.00 5.68
5690 5957 0.535102 CTTTGGAGGTGTCTGGCGTT 60.535 55.000 0.00 0.00 0.00 4.84
5691 5958 0.817634 TTTGGAGGTGTCTGGCGTTG 60.818 55.000 0.00 0.00 0.00 4.10
5692 5959 2.358737 GGAGGTGTCTGGCGTTGG 60.359 66.667 0.00 0.00 0.00 3.77
5693 5960 2.426023 GAGGTGTCTGGCGTTGGT 59.574 61.111 0.00 0.00 0.00 3.67
5694 5961 1.227853 GAGGTGTCTGGCGTTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
5695 5962 1.507141 GAGGTGTCTGGCGTTGGTTG 61.507 60.000 0.00 0.00 0.00 3.77
5696 5963 1.525077 GGTGTCTGGCGTTGGTTGA 60.525 57.895 0.00 0.00 0.00 3.18
5697 5964 1.647084 GTGTCTGGCGTTGGTTGAC 59.353 57.895 0.00 0.00 0.00 3.18
5698 5965 1.092921 GTGTCTGGCGTTGGTTGACA 61.093 55.000 0.00 0.00 35.62 3.58
5699 5966 0.393132 TGTCTGGCGTTGGTTGACAA 60.393 50.000 0.00 0.00 35.15 3.18
5700 5967 0.307760 GTCTGGCGTTGGTTGACAAG 59.692 55.000 0.00 0.00 40.38 3.16
5701 5968 1.008538 CTGGCGTTGGTTGACAAGC 60.009 57.895 10.46 10.46 40.38 4.01
5702 5969 2.051345 GGCGTTGGTTGACAAGCG 60.051 61.111 12.43 5.22 40.38 4.68
5703 5970 2.051345 GCGTTGGTTGACAAGCGG 60.051 61.111 12.43 5.85 40.38 5.52
5704 5971 2.637025 CGTTGGTTGACAAGCGGG 59.363 61.111 12.43 0.98 40.38 6.13
5705 5972 2.335011 GTTGGTTGACAAGCGGGC 59.665 61.111 12.43 2.05 40.38 6.13
5706 5973 2.193536 GTTGGTTGACAAGCGGGCT 61.194 57.895 12.43 0.00 40.38 5.19
5707 5974 1.454847 TTGGTTGACAAGCGGGCTT 60.455 52.632 12.43 0.00 33.18 4.35
5708 5975 1.040339 TTGGTTGACAAGCGGGCTTT 61.040 50.000 12.43 0.00 33.18 3.51
5709 5976 1.007387 GGTTGACAAGCGGGCTTTG 60.007 57.895 2.58 2.64 33.42 2.77
5710 5977 1.733526 GTTGACAAGCGGGCTTTGT 59.266 52.632 2.58 5.78 33.42 2.83
5711 5978 0.948678 GTTGACAAGCGGGCTTTGTA 59.051 50.000 2.58 0.00 33.42 2.41
5712 5979 1.069227 GTTGACAAGCGGGCTTTGTAG 60.069 52.381 2.58 0.00 33.42 2.74
5713 5980 0.107831 TGACAAGCGGGCTTTGTAGT 59.892 50.000 2.58 0.00 33.42 2.73
5714 5981 1.235724 GACAAGCGGGCTTTGTAGTT 58.764 50.000 2.58 0.00 33.42 2.24
5715 5982 1.607148 GACAAGCGGGCTTTGTAGTTT 59.393 47.619 2.58 0.00 33.42 2.66
5716 5983 1.336755 ACAAGCGGGCTTTGTAGTTTG 59.663 47.619 2.58 0.00 33.42 2.93
5717 5984 1.336755 CAAGCGGGCTTTGTAGTTTGT 59.663 47.619 2.58 0.00 33.42 2.83
5718 5985 1.687563 AGCGGGCTTTGTAGTTTGTT 58.312 45.000 0.00 0.00 0.00 2.83
5719 5986 2.028876 AGCGGGCTTTGTAGTTTGTTT 58.971 42.857 0.00 0.00 0.00 2.83
5720 5987 2.124122 GCGGGCTTTGTAGTTTGTTTG 58.876 47.619 0.00 0.00 0.00 2.93
5721 5988 2.738135 CGGGCTTTGTAGTTTGTTTGG 58.262 47.619 0.00 0.00 0.00 3.28
5722 5989 2.100087 CGGGCTTTGTAGTTTGTTTGGT 59.900 45.455 0.00 0.00 0.00 3.67
5723 5990 3.713288 GGGCTTTGTAGTTTGTTTGGTC 58.287 45.455 0.00 0.00 0.00 4.02
5724 5991 3.368495 GGCTTTGTAGTTTGTTTGGTCG 58.632 45.455 0.00 0.00 0.00 4.79
5725 5992 3.181494 GGCTTTGTAGTTTGTTTGGTCGT 60.181 43.478 0.00 0.00 0.00 4.34
5726 5993 4.417506 GCTTTGTAGTTTGTTTGGTCGTT 58.582 39.130 0.00 0.00 0.00 3.85
5727 5994 4.264380 GCTTTGTAGTTTGTTTGGTCGTTG 59.736 41.667 0.00 0.00 0.00 4.10
5728 5995 4.358494 TTGTAGTTTGTTTGGTCGTTGG 57.642 40.909 0.00 0.00 0.00 3.77
5729 5996 3.345414 TGTAGTTTGTTTGGTCGTTGGT 58.655 40.909 0.00 0.00 0.00 3.67
5730 5997 2.931512 AGTTTGTTTGGTCGTTGGTG 57.068 45.000 0.00 0.00 0.00 4.17
5731 5998 1.474879 AGTTTGTTTGGTCGTTGGTGG 59.525 47.619 0.00 0.00 0.00 4.61
5732 5999 1.202817 GTTTGTTTGGTCGTTGGTGGT 59.797 47.619 0.00 0.00 0.00 4.16
5733 6000 1.546961 TTGTTTGGTCGTTGGTGGTT 58.453 45.000 0.00 0.00 0.00 3.67
5734 6001 0.811915 TGTTTGGTCGTTGGTGGTTG 59.188 50.000 0.00 0.00 0.00 3.77
5735 6002 0.812549 GTTTGGTCGTTGGTGGTTGT 59.187 50.000 0.00 0.00 0.00 3.32
5736 6003 1.096416 TTTGGTCGTTGGTGGTTGTC 58.904 50.000 0.00 0.00 0.00 3.18
5737 6004 0.253610 TTGGTCGTTGGTGGTTGTCT 59.746 50.000 0.00 0.00 0.00 3.41
5738 6005 0.253610 TGGTCGTTGGTGGTTGTCTT 59.746 50.000 0.00 0.00 0.00 3.01
5739 6006 0.942252 GGTCGTTGGTGGTTGTCTTC 59.058 55.000 0.00 0.00 0.00 2.87
5740 6007 0.580104 GTCGTTGGTGGTTGTCTTCG 59.420 55.000 0.00 0.00 0.00 3.79
5741 6008 0.531090 TCGTTGGTGGTTGTCTTCGG 60.531 55.000 0.00 0.00 0.00 4.30
5742 6009 0.531090 CGTTGGTGGTTGTCTTCGGA 60.531 55.000 0.00 0.00 0.00 4.55
5743 6010 0.942252 GTTGGTGGTTGTCTTCGGAC 59.058 55.000 0.00 0.00 44.66 4.79
5744 6011 0.834612 TTGGTGGTTGTCTTCGGACT 59.165 50.000 0.00 0.00 44.70 3.85
5745 6012 0.834612 TGGTGGTTGTCTTCGGACTT 59.165 50.000 0.00 0.00 44.70 3.01
5746 6013 1.226746 GGTGGTTGTCTTCGGACTTG 58.773 55.000 0.00 0.00 44.70 3.16
5747 6014 0.586802 GTGGTTGTCTTCGGACTTGC 59.413 55.000 0.00 0.00 44.70 4.01
5748 6015 0.534203 TGGTTGTCTTCGGACTTGCC 60.534 55.000 0.00 0.00 44.70 4.52
5749 6016 0.250338 GGTTGTCTTCGGACTTGCCT 60.250 55.000 0.00 0.00 44.70 4.75
5750 6017 0.868406 GTTGTCTTCGGACTTGCCTG 59.132 55.000 0.00 0.00 44.70 4.85
5751 6018 0.250295 TTGTCTTCGGACTTGCCTGG 60.250 55.000 0.00 0.00 44.70 4.45
5752 6019 1.376037 GTCTTCGGACTTGCCTGGG 60.376 63.158 0.00 0.00 41.44 4.45
5753 6020 1.841556 TCTTCGGACTTGCCTGGGT 60.842 57.895 0.00 0.00 0.00 4.51
5754 6021 1.672356 CTTCGGACTTGCCTGGGTG 60.672 63.158 0.00 0.00 0.00 4.61
5755 6022 2.397413 CTTCGGACTTGCCTGGGTGT 62.397 60.000 0.00 0.00 0.00 4.16
5756 6023 2.669569 CGGACTTGCCTGGGTGTG 60.670 66.667 0.00 0.00 0.00 3.82
5757 6024 2.282462 GGACTTGCCTGGGTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
5758 6025 2.515901 GACTTGCCTGGGTGTGGT 59.484 61.111 0.00 0.00 0.00 4.16
5759 6026 1.898574 GACTTGCCTGGGTGTGGTG 60.899 63.158 0.00 0.00 0.00 4.17
5760 6027 2.195683 CTTGCCTGGGTGTGGTGT 59.804 61.111 0.00 0.00 0.00 4.16
5761 6028 1.455587 CTTGCCTGGGTGTGGTGTT 60.456 57.895 0.00 0.00 0.00 3.32
5762 6029 1.454847 TTGCCTGGGTGTGGTGTTC 60.455 57.895 0.00 0.00 0.00 3.18
5763 6030 2.978010 GCCTGGGTGTGGTGTTCG 60.978 66.667 0.00 0.00 0.00 3.95
5764 6031 2.508928 CCTGGGTGTGGTGTTCGT 59.491 61.111 0.00 0.00 0.00 3.85
5765 6032 1.891919 CCTGGGTGTGGTGTTCGTG 60.892 63.158 0.00 0.00 0.00 4.35
5766 6033 2.515057 TGGGTGTGGTGTTCGTGC 60.515 61.111 0.00 0.00 0.00 5.34
5767 6034 2.203153 GGGTGTGGTGTTCGTGCT 60.203 61.111 0.00 0.00 0.00 4.40
5768 6035 1.070105 GGGTGTGGTGTTCGTGCTA 59.930 57.895 0.00 0.00 0.00 3.49
5769 6036 1.226030 GGGTGTGGTGTTCGTGCTAC 61.226 60.000 0.00 0.00 0.00 3.58
5770 6037 1.554042 GGTGTGGTGTTCGTGCTACG 61.554 60.000 2.79 2.79 44.19 3.51
5781 6048 1.717113 TCGTGCTACGATTGTTGTTCG 59.283 47.619 7.20 0.00 46.73 3.95
5782 6049 1.782023 CGTGCTACGATTGTTGTTCGC 60.782 52.381 3.04 0.00 46.05 4.70
5783 6050 1.193650 GTGCTACGATTGTTGTTCGCA 59.806 47.619 0.00 0.00 40.19 5.10
5784 6051 1.459209 TGCTACGATTGTTGTTCGCAG 59.541 47.619 0.00 0.00 40.19 5.18
5785 6052 1.786928 GCTACGATTGTTGTTCGCAGC 60.787 52.381 2.93 2.93 45.47 5.25
5786 6053 0.436913 TACGATTGTTGTTCGCAGCG 59.563 50.000 9.06 9.06 40.19 5.18
5787 6054 1.218875 ACGATTGTTGTTCGCAGCGA 61.219 50.000 15.11 15.11 40.19 4.93
5788 6055 0.517132 CGATTGTTGTTCGCAGCGAG 60.517 55.000 18.62 0.00 37.14 5.03
5789 6056 0.512952 GATTGTTGTTCGCAGCGAGT 59.487 50.000 18.62 0.00 37.14 4.18
5790 6057 0.235665 ATTGTTGTTCGCAGCGAGTG 59.764 50.000 18.62 0.00 37.14 3.51
5791 6058 0.808060 TTGTTGTTCGCAGCGAGTGA 60.808 50.000 18.62 0.00 37.14 3.41
5792 6059 0.599991 TGTTGTTCGCAGCGAGTGAT 60.600 50.000 18.62 0.00 37.14 3.06
5793 6060 1.336424 TGTTGTTCGCAGCGAGTGATA 60.336 47.619 18.62 0.00 37.14 2.15
5794 6061 1.724623 GTTGTTCGCAGCGAGTGATAA 59.275 47.619 18.62 5.31 37.14 1.75
5795 6062 2.293677 TGTTCGCAGCGAGTGATAAT 57.706 45.000 18.62 0.00 37.14 1.28
5796 6063 1.926510 TGTTCGCAGCGAGTGATAATG 59.073 47.619 18.62 0.00 37.14 1.90
5797 6064 1.927174 GTTCGCAGCGAGTGATAATGT 59.073 47.619 18.62 0.00 37.14 2.71
5798 6065 2.293677 TCGCAGCGAGTGATAATGTT 57.706 45.000 15.11 0.00 0.00 2.71
5799 6066 2.193447 TCGCAGCGAGTGATAATGTTC 58.807 47.619 15.11 0.00 0.00 3.18
5800 6067 2.159240 TCGCAGCGAGTGATAATGTTCT 60.159 45.455 15.11 0.00 0.00 3.01
5801 6068 2.604914 CGCAGCGAGTGATAATGTTCTT 59.395 45.455 9.98 0.00 0.00 2.52
5802 6069 3.796717 CGCAGCGAGTGATAATGTTCTTA 59.203 43.478 9.98 0.00 0.00 2.10
5803 6070 4.445718 CGCAGCGAGTGATAATGTTCTTAT 59.554 41.667 9.98 0.00 0.00 1.73
5804 6071 5.629435 CGCAGCGAGTGATAATGTTCTTATA 59.371 40.000 9.98 0.00 0.00 0.98
5805 6072 6.399039 CGCAGCGAGTGATAATGTTCTTATAC 60.399 42.308 9.98 0.00 0.00 1.47
5806 6073 6.642950 GCAGCGAGTGATAATGTTCTTATACT 59.357 38.462 0.00 0.00 0.00 2.12
5807 6074 7.169982 GCAGCGAGTGATAATGTTCTTATACTT 59.830 37.037 0.00 0.00 0.00 2.24
5808 6075 9.678941 CAGCGAGTGATAATGTTCTTATACTTA 57.321 33.333 0.00 0.00 0.00 2.24
5821 6088 9.998106 TGTTCTTATACTTATAATTCTGCCCTC 57.002 33.333 0.00 0.00 0.00 4.30
5830 6097 8.885346 ACTTATAATTCTGCCCTCTATAAAGCT 58.115 33.333 0.00 0.00 0.00 3.74
5833 6100 6.500589 AATTCTGCCCTCTATAAAGCTACA 57.499 37.500 0.00 0.00 0.00 2.74
5834 6101 5.537300 TTCTGCCCTCTATAAAGCTACAG 57.463 43.478 0.00 0.00 0.00 2.74
5835 6102 4.547671 TCTGCCCTCTATAAAGCTACAGT 58.452 43.478 0.00 0.00 0.00 3.55
5836 6103 5.702266 TCTGCCCTCTATAAAGCTACAGTA 58.298 41.667 0.00 0.00 0.00 2.74
5837 6104 6.315714 TCTGCCCTCTATAAAGCTACAGTAT 58.684 40.000 0.00 0.00 0.00 2.12
5838 6105 6.209589 TCTGCCCTCTATAAAGCTACAGTATG 59.790 42.308 0.00 0.00 46.00 2.39
5839 6106 5.172205 GCCCTCTATAAAGCTACAGTATGC 58.828 45.833 0.00 0.00 42.53 3.14
5840 6107 5.725362 CCCTCTATAAAGCTACAGTATGCC 58.275 45.833 0.00 0.00 42.53 4.40
5841 6108 5.482175 CCCTCTATAAAGCTACAGTATGCCT 59.518 44.000 0.00 0.00 42.53 4.75
5842 6109 6.663953 CCCTCTATAAAGCTACAGTATGCCTA 59.336 42.308 0.00 0.00 42.53 3.93
5843 6110 7.147983 CCCTCTATAAAGCTACAGTATGCCTAG 60.148 44.444 0.00 0.00 42.53 3.02
5844 6111 7.147983 CCTCTATAAAGCTACAGTATGCCTAGG 60.148 44.444 3.67 3.67 42.53 3.02
5845 6112 3.477210 AAAGCTACAGTATGCCTAGGC 57.523 47.619 27.71 27.71 42.53 3.93
5846 6113 0.962489 AGCTACAGTATGCCTAGGCG 59.038 55.000 28.28 16.06 45.51 5.52
5847 6114 0.674534 GCTACAGTATGCCTAGGCGT 59.325 55.000 30.66 30.66 45.51 5.68
5848 6115 1.884579 GCTACAGTATGCCTAGGCGTA 59.115 52.381 28.46 28.46 45.51 4.42
5855 6122 1.776662 ATGCCTAGGCGTACTCTTGA 58.223 50.000 27.44 6.91 45.51 3.02
5856 6123 1.552578 TGCCTAGGCGTACTCTTGAA 58.447 50.000 28.28 4.00 45.51 2.69
5857 6124 1.897133 TGCCTAGGCGTACTCTTGAAA 59.103 47.619 28.28 3.43 45.51 2.69
5858 6125 2.300723 TGCCTAGGCGTACTCTTGAAAA 59.699 45.455 28.28 3.20 45.51 2.29
5859 6126 3.244284 TGCCTAGGCGTACTCTTGAAAAA 60.244 43.478 28.28 2.72 45.51 1.94
5879 6146 2.793278 AAAAAGTTCCACACGCATCC 57.207 45.000 0.00 0.00 0.00 3.51
5880 6147 1.686355 AAAAGTTCCACACGCATCCA 58.314 45.000 0.00 0.00 0.00 3.41
5881 6148 0.951558 AAAGTTCCACACGCATCCAC 59.048 50.000 0.00 0.00 0.00 4.02
5882 6149 0.179032 AAGTTCCACACGCATCCACA 60.179 50.000 0.00 0.00 0.00 4.17
5883 6150 0.036732 AGTTCCACACGCATCCACAT 59.963 50.000 0.00 0.00 0.00 3.21
5884 6151 0.168788 GTTCCACACGCATCCACATG 59.831 55.000 0.00 0.00 0.00 3.21
5885 6152 0.036022 TTCCACACGCATCCACATGA 59.964 50.000 0.00 0.00 30.57 3.07
5886 6153 0.036022 TCCACACGCATCCACATGAA 59.964 50.000 0.00 0.00 30.57 2.57
5887 6154 1.097232 CCACACGCATCCACATGAAT 58.903 50.000 0.00 0.00 30.57 2.57
5888 6155 2.093235 TCCACACGCATCCACATGAATA 60.093 45.455 0.00 0.00 30.57 1.75
5889 6156 2.288729 CCACACGCATCCACATGAATAG 59.711 50.000 0.00 0.00 30.57 1.73
5890 6157 2.938451 CACACGCATCCACATGAATAGT 59.062 45.455 0.00 0.00 30.57 2.12
5891 6158 4.119136 CACACGCATCCACATGAATAGTA 58.881 43.478 0.00 0.00 30.57 1.82
5892 6159 4.570369 CACACGCATCCACATGAATAGTAA 59.430 41.667 0.00 0.00 30.57 2.24
5893 6160 5.064579 CACACGCATCCACATGAATAGTAAA 59.935 40.000 0.00 0.00 30.57 2.01
5894 6161 5.645929 ACACGCATCCACATGAATAGTAAAA 59.354 36.000 0.00 0.00 30.57 1.52
5895 6162 6.183360 ACACGCATCCACATGAATAGTAAAAG 60.183 38.462 0.00 0.00 30.57 2.27
5896 6163 5.880332 ACGCATCCACATGAATAGTAAAAGT 59.120 36.000 0.00 0.00 30.57 2.66
5897 6164 6.374333 ACGCATCCACATGAATAGTAAAAGTT 59.626 34.615 0.00 0.00 30.57 2.66
5898 6165 6.907212 CGCATCCACATGAATAGTAAAAGTTC 59.093 38.462 0.00 0.00 30.57 3.01
5899 6166 6.907212 GCATCCACATGAATAGTAAAAGTTCG 59.093 38.462 0.00 0.00 30.57 3.95
5900 6167 7.414098 GCATCCACATGAATAGTAAAAGTTCGT 60.414 37.037 0.00 0.00 30.57 3.85
5901 6168 7.359262 TCCACATGAATAGTAAAAGTTCGTG 57.641 36.000 0.00 5.32 42.00 4.35
5902 6169 6.021596 CCACATGAATAGTAAAAGTTCGTGC 58.978 40.000 0.00 0.00 40.69 5.34
5903 6170 6.128282 CCACATGAATAGTAAAAGTTCGTGCT 60.128 38.462 0.00 0.00 40.69 4.40
5904 6171 7.064134 CCACATGAATAGTAAAAGTTCGTGCTA 59.936 37.037 0.00 0.00 40.69 3.49
5905 6172 7.898309 CACATGAATAGTAAAAGTTCGTGCTAC 59.102 37.037 0.00 0.00 40.69 3.58
5906 6173 7.601130 ACATGAATAGTAAAAGTTCGTGCTACA 59.399 33.333 0.00 0.00 40.69 2.74
5907 6174 7.342318 TGAATAGTAAAAGTTCGTGCTACAC 57.658 36.000 0.00 0.00 0.00 2.90
5908 6175 7.149973 TGAATAGTAAAAGTTCGTGCTACACT 58.850 34.615 0.00 0.00 31.34 3.55
5909 6176 7.327761 TGAATAGTAAAAGTTCGTGCTACACTC 59.672 37.037 0.00 0.00 31.34 3.51
5910 6177 3.979495 AGTAAAAGTTCGTGCTACACTCG 59.021 43.478 0.00 0.00 36.62 4.18
5911 6178 2.503920 AAAGTTCGTGCTACACTCGT 57.496 45.000 0.00 0.00 36.65 4.18
5912 6179 2.503920 AAGTTCGTGCTACACTCGTT 57.496 45.000 0.00 0.00 36.65 3.85
5913 6180 1.767289 AGTTCGTGCTACACTCGTTG 58.233 50.000 0.00 0.00 36.65 4.10
5914 6181 1.066605 AGTTCGTGCTACACTCGTTGT 59.933 47.619 0.00 0.00 42.84 3.32
5915 6182 1.856597 GTTCGTGCTACACTCGTTGTT 59.143 47.619 0.00 0.00 39.91 2.83
5916 6183 2.212869 TCGTGCTACACTCGTTGTTT 57.787 45.000 0.00 0.00 39.91 2.83
5917 6184 3.352554 TCGTGCTACACTCGTTGTTTA 57.647 42.857 0.00 0.00 39.91 2.01
5918 6185 3.044986 TCGTGCTACACTCGTTGTTTAC 58.955 45.455 0.00 0.00 39.91 2.01
5919 6186 2.790448 CGTGCTACACTCGTTGTTTACA 59.210 45.455 0.00 0.00 39.91 2.41
5920 6187 3.243410 CGTGCTACACTCGTTGTTTACAA 59.757 43.478 0.00 0.00 39.91 2.41
5921 6188 4.834588 CGTGCTACACTCGTTGTTTACAAC 60.835 45.833 14.24 14.24 41.17 3.32
5933 6200 6.520792 GTTGTTTACAACGAGTGATAGTGT 57.479 37.500 9.72 0.00 45.44 3.55
5934 6201 6.940714 GTTGTTTACAACGAGTGATAGTGTT 58.059 36.000 9.72 0.00 45.44 3.32
5935 6202 6.758593 TGTTTACAACGAGTGATAGTGTTC 57.241 37.500 0.00 0.00 0.00 3.18
5936 6203 6.509656 TGTTTACAACGAGTGATAGTGTTCT 58.490 36.000 0.00 0.00 0.00 3.01
5937 6204 6.982141 TGTTTACAACGAGTGATAGTGTTCTT 59.018 34.615 0.00 0.00 0.00 2.52
5938 6205 7.042992 TGTTTACAACGAGTGATAGTGTTCTTG 60.043 37.037 0.00 0.00 0.00 3.02
5939 6206 4.945246 ACAACGAGTGATAGTGTTCTTGT 58.055 39.130 0.00 0.00 0.00 3.16
5940 6207 6.080648 ACAACGAGTGATAGTGTTCTTGTA 57.919 37.500 0.00 0.00 0.00 2.41
5941 6208 5.919141 ACAACGAGTGATAGTGTTCTTGTAC 59.081 40.000 0.00 0.00 0.00 2.90
5942 6209 5.961396 ACGAGTGATAGTGTTCTTGTACT 57.039 39.130 0.00 0.00 0.00 2.73
5943 6210 6.328641 ACGAGTGATAGTGTTCTTGTACTT 57.671 37.500 0.00 0.00 0.00 2.24
5944 6211 7.444629 ACGAGTGATAGTGTTCTTGTACTTA 57.555 36.000 0.00 0.00 0.00 2.24
5945 6212 8.053026 ACGAGTGATAGTGTTCTTGTACTTAT 57.947 34.615 0.00 0.00 0.00 1.73
5946 6213 9.170734 ACGAGTGATAGTGTTCTTGTACTTATA 57.829 33.333 0.00 0.00 0.00 0.98
5947 6214 9.999009 CGAGTGATAGTGTTCTTGTACTTATAA 57.001 33.333 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 0.250295 CCACCAACAGCTCCGAAGAA 60.250 55.000 0.00 0.00 0.00 2.52
113 114 2.328099 GCCACCAACAGCTCCGAAG 61.328 63.158 0.00 0.00 0.00 3.79
188 189 0.179134 GTCTTGACGCGAGGTGCTAT 60.179 55.000 15.93 0.00 43.27 2.97
198 199 3.712881 GCACCACGGTCTTGACGC 61.713 66.667 0.00 0.00 34.00 5.19
210 212 0.590682 CAACAGTTACATGCGCACCA 59.409 50.000 14.90 0.00 0.00 4.17
215 217 4.260497 CCATGATCTCAACAGTTACATGCG 60.260 45.833 0.00 0.00 34.35 4.73
306 309 4.156739 GCTAGATCTTGGGTTTTCACCTTG 59.843 45.833 0.00 0.00 43.65 3.61
307 310 4.336280 GCTAGATCTTGGGTTTTCACCTT 58.664 43.478 0.00 0.00 43.65 3.50
379 382 0.669318 TCCAACAGCGACGCCTTTAG 60.669 55.000 17.79 3.11 0.00 1.85
380 383 0.669318 CTCCAACAGCGACGCCTTTA 60.669 55.000 17.79 0.00 0.00 1.85
381 384 1.961277 CTCCAACAGCGACGCCTTT 60.961 57.895 17.79 6.99 0.00 3.11
385 388 0.517316 AAATTCTCCAACAGCGACGC 59.483 50.000 13.03 13.03 0.00 5.19
418 421 7.800380 GCACCAATCATCTCTTAACATTATTCG 59.200 37.037 0.00 0.00 0.00 3.34
423 426 4.336433 CCGCACCAATCATCTCTTAACATT 59.664 41.667 0.00 0.00 0.00 2.71
434 437 2.957402 ACCATATCCGCACCAATCAT 57.043 45.000 0.00 0.00 0.00 2.45
435 438 2.727123 AACCATATCCGCACCAATCA 57.273 45.000 0.00 0.00 0.00 2.57
436 439 4.518970 ACAATAACCATATCCGCACCAATC 59.481 41.667 0.00 0.00 0.00 2.67
455 458 6.801575 ACAATGGTAAAAAGACGACAACAAT 58.198 32.000 0.00 0.00 0.00 2.71
473 480 4.695455 ACTCTGAAACGGTCAATACAATGG 59.305 41.667 0.00 0.00 35.22 3.16
478 485 6.492254 ACAAAAACTCTGAAACGGTCAATAC 58.508 36.000 0.00 0.00 35.22 1.89
480 487 5.576447 ACAAAAACTCTGAAACGGTCAAT 57.424 34.783 0.00 0.00 35.22 2.57
485 492 6.471198 GGAGTAAAACAAAAACTCTGAAACGG 59.529 38.462 0.00 0.00 39.65 4.44
488 495 7.039644 TGGTGGAGTAAAACAAAAACTCTGAAA 60.040 33.333 0.00 0.00 39.65 2.69
549 558 1.336440 CTCACAAAAATCACACCGGCA 59.664 47.619 0.00 0.00 0.00 5.69
565 574 3.262420 CATAGCCAACACCTACACTCAC 58.738 50.000 0.00 0.00 0.00 3.51
573 582 1.283029 AGATGCACATAGCCAACACCT 59.717 47.619 0.00 0.00 44.83 4.00
594 603 5.655532 AGGACACATAACGTCTGTATAGGTT 59.344 40.000 3.67 0.00 33.73 3.50
606 615 5.146460 CAAACACAATGAGGACACATAACG 58.854 41.667 0.00 0.00 0.00 3.18
759 772 9.138062 GCATCTATAGTGATGTATCTTTGTGAG 57.862 37.037 0.00 0.00 44.02 3.51
760 773 8.090831 GGCATCTATAGTGATGTATCTTTGTGA 58.909 37.037 0.00 0.00 44.02 3.58
829 842 9.688091 GAAGGAATCCTAGGAAAATTTTACTCT 57.312 33.333 19.07 11.50 32.49 3.24
840 853 6.504279 ACTTTTAGGTGAAGGAATCCTAGGAA 59.496 38.462 17.30 0.00 35.61 3.36
1014 1045 4.551388 CTCGTCTTGTAGACTTGAGCTTT 58.449 43.478 5.41 0.00 42.92 3.51
1024 1055 5.462530 TTGATGTTTCCTCGTCTTGTAGA 57.537 39.130 0.00 0.00 0.00 2.59
1046 1077 3.639561 GGTGGTTGTAGGGTTTTGATGTT 59.360 43.478 0.00 0.00 0.00 2.71
1047 1078 3.227614 GGTGGTTGTAGGGTTTTGATGT 58.772 45.455 0.00 0.00 0.00 3.06
1502 1535 0.597637 CGATCGGGACTCCAAATCCG 60.598 60.000 7.38 0.00 43.42 4.18
1623 1659 3.057315 CCAGGCACAAACCAAGTGATTAG 60.057 47.826 0.00 0.00 39.30 1.73
1686 1722 2.464459 GGGCAAAGACGCATCTCCG 61.464 63.158 0.00 0.00 32.34 4.63
1702 1738 0.804989 GAATCAAACACTCCGCTGGG 59.195 55.000 0.00 0.00 0.00 4.45
1748 1784 8.265055 CCCACTAGAAATCCAAACTAATCACTA 58.735 37.037 0.00 0.00 0.00 2.74
1845 1882 3.736581 GCAGACTGCTCGTTTTCAC 57.263 52.632 20.41 0.00 40.96 3.18
1872 1909 0.599204 AACCGTTAGGAGCACACACG 60.599 55.000 0.00 0.00 41.02 4.49
1925 2046 5.436175 CACAACCAACTCATGTCCCATATA 58.564 41.667 0.00 0.00 0.00 0.86
1926 2047 4.272489 CACAACCAACTCATGTCCCATAT 58.728 43.478 0.00 0.00 0.00 1.78
1927 2048 3.561097 CCACAACCAACTCATGTCCCATA 60.561 47.826 0.00 0.00 0.00 2.74
2006 2127 4.832248 ACAAACATCTGCGAAGGATCTTA 58.168 39.130 0.00 0.00 0.00 2.10
2019 2140 8.311109 ACAAAACAAAGAAAGGTACAAACATCT 58.689 29.630 0.00 0.00 0.00 2.90
2198 2334 4.281898 TCCTACTGCTTAAGGAACCAAC 57.718 45.455 4.29 0.00 38.97 3.77
2219 2355 6.061441 TGTTGAACTCCAGTTGTTATCACAT 58.939 36.000 0.00 0.00 38.56 3.21
2276 2414 9.578439 CTCCAGATGTTTTTGAGGAATATTTTC 57.422 33.333 0.00 0.00 0.00 2.29
2277 2415 9.093458 ACTCCAGATGTTTTTGAGGAATATTTT 57.907 29.630 0.00 0.00 0.00 1.82
2281 2419 9.581289 TTAAACTCCAGATGTTTTTGAGGAATA 57.419 29.630 0.00 0.00 38.41 1.75
2283 2421 7.559897 AGTTAAACTCCAGATGTTTTTGAGGAA 59.440 33.333 0.00 0.00 38.41 3.36
2285 2423 7.013274 TCAGTTAAACTCCAGATGTTTTTGAGG 59.987 37.037 0.00 0.00 38.41 3.86
2286 2424 7.930217 TCAGTTAAACTCCAGATGTTTTTGAG 58.070 34.615 0.00 0.00 38.41 3.02
2288 2426 8.405531 TCTTCAGTTAAACTCCAGATGTTTTTG 58.594 33.333 0.00 0.00 38.41 2.44
2296 2439 5.011125 CACCTCTCTTCAGTTAAACTCCAGA 59.989 44.000 0.00 0.00 0.00 3.86
2305 2448 5.425217 TCCATATTGCACCTCTCTTCAGTTA 59.575 40.000 0.00 0.00 0.00 2.24
2557 2749 6.555463 AGGCTGATTCAATTCAATTCCAAT 57.445 33.333 0.00 0.00 0.00 3.16
2592 2784 3.128764 GGAGAAGGAATAAAAAGCCGGTG 59.871 47.826 1.90 0.00 0.00 4.94
2599 2791 7.518188 AGACTGTCAAGGAGAAGGAATAAAAA 58.482 34.615 10.88 0.00 0.00 1.94
2724 2922 9.947669 GGAATGACAATCAATTTCTGAGAATAG 57.052 33.333 0.00 0.00 37.52 1.73
2739 2937 5.957842 TTGTAACCACTGGAATGACAATC 57.042 39.130 0.71 0.00 0.00 2.67
2740 2938 6.097554 TGTTTTGTAACCACTGGAATGACAAT 59.902 34.615 0.71 0.00 33.15 2.71
2741 2939 5.419155 TGTTTTGTAACCACTGGAATGACAA 59.581 36.000 0.71 3.78 33.15 3.18
2742 2940 4.950475 TGTTTTGTAACCACTGGAATGACA 59.050 37.500 0.71 0.00 33.15 3.58
2743 2941 5.508200 TGTTTTGTAACCACTGGAATGAC 57.492 39.130 0.71 0.00 33.15 3.06
2745 2943 4.744631 GCTTGTTTTGTAACCACTGGAATG 59.255 41.667 0.71 0.00 33.15 2.67
2746 2944 4.202212 GGCTTGTTTTGTAACCACTGGAAT 60.202 41.667 0.71 0.00 33.15 3.01
2747 2945 3.131400 GGCTTGTTTTGTAACCACTGGAA 59.869 43.478 0.71 0.00 33.15 3.53
2748 2946 2.691011 GGCTTGTTTTGTAACCACTGGA 59.309 45.455 0.71 0.00 33.15 3.86
2749 2947 2.693074 AGGCTTGTTTTGTAACCACTGG 59.307 45.455 0.00 0.00 33.15 4.00
2750 2948 3.705604 CAGGCTTGTTTTGTAACCACTG 58.294 45.455 0.00 0.00 33.15 3.66
2751 2949 2.100749 GCAGGCTTGTTTTGTAACCACT 59.899 45.455 0.00 0.00 33.15 4.00
2760 2967 8.150296 ACTAAATAAATTCAGCAGGCTTGTTTT 58.850 29.630 0.00 0.00 0.00 2.43
2798 3005 2.109128 TCAAGGTTAACTCATGGGGCAA 59.891 45.455 5.42 0.00 0.00 4.52
2968 3181 7.141363 GTCCATTATGCTCATATTTTCACCAC 58.859 38.462 0.00 0.00 0.00 4.16
3028 3241 2.398588 AGGTATCAAAGAGATGGGCGA 58.601 47.619 0.00 0.00 37.57 5.54
3029 3242 2.918712 AGGTATCAAAGAGATGGGCG 57.081 50.000 0.00 0.00 37.57 6.13
3067 3280 5.414789 TCTAACAAGTAACTGCAGCCATA 57.585 39.130 15.27 1.63 0.00 2.74
3132 3345 7.094377 GCAATATAAGTGTCTGTTTTTCCCTCA 60.094 37.037 0.00 0.00 0.00 3.86
3142 3355 9.231297 ACAATTTACTGCAATATAAGTGTCTGT 57.769 29.630 0.00 0.00 0.00 3.41
3193 3406 0.538057 TCTGCAGTGAAAGCAAGGGG 60.538 55.000 14.67 0.00 42.17 4.79
3307 3520 3.676172 TCCATTGTGCGAGTAACTTAACG 59.324 43.478 0.00 0.00 0.00 3.18
3550 3763 2.157668 CGTACTACCACTGCAAAAGCAG 59.842 50.000 15.28 15.28 42.90 4.24
3641 3854 6.955407 CAGCACTTGTTTTTAAAAGCTTCAAC 59.045 34.615 14.73 4.21 0.00 3.18
3642 3855 6.091986 CCAGCACTTGTTTTTAAAAGCTTCAA 59.908 34.615 14.73 11.07 0.00 2.69
3664 3877 7.880160 TCCACCAATGAAAATTATACTCCAG 57.120 36.000 0.00 0.00 0.00 3.86
3679 3892 3.077484 AGTCCAGTTCATCCACCAATG 57.923 47.619 0.00 0.00 0.00 2.82
3699 3912 1.213678 CATCCCTGGAGAATGAGGCAA 59.786 52.381 0.00 0.00 0.00 4.52
3705 3918 2.346529 AGATCCCATCCCTGGAGAATG 58.653 52.381 0.00 0.00 46.37 2.67
4082 4298 1.160137 CCCTTGAAACTTCTGGCTCG 58.840 55.000 0.00 0.00 0.00 5.03
4118 4334 2.042686 TTGCCAATCCAGGAGAATCG 57.957 50.000 0.00 0.00 34.37 3.34
4412 4629 7.615403 CAGCTACAATATCAATAGCCTCCTTA 58.385 38.462 8.48 0.00 41.91 2.69
4472 4689 4.011966 AGATCTGACAGCACAATCAACA 57.988 40.909 0.00 0.00 0.00 3.33
4631 4848 0.952280 TATCACCGGCGTCTGAGATC 59.048 55.000 6.01 0.00 0.00 2.75
4640 4857 3.961477 TCATTGATTTTATCACCGGCG 57.039 42.857 0.00 0.00 39.39 6.46
4791 5011 3.365265 GGCAGACCCGCACCTTTG 61.365 66.667 0.00 0.00 0.00 2.77
5132 5362 5.997746 TGACAAATACCACAAGGAAGAAGAG 59.002 40.000 0.00 0.00 38.69 2.85
5253 5483 3.004171 CAACCGAACATCCCGACATTAA 58.996 45.455 0.00 0.00 0.00 1.40
5393 5629 4.476628 AATTCAAGGCTTATGCAAAGGG 57.523 40.909 0.00 0.00 41.91 3.95
5434 5682 8.340618 TCCTATATTTGATAAGAAGCCATTGC 57.659 34.615 0.00 0.00 37.95 3.56
5437 5685 9.678260 GACATCCTATATTTGATAAGAAGCCAT 57.322 33.333 0.00 0.00 0.00 4.40
5438 5686 8.659527 TGACATCCTATATTTGATAAGAAGCCA 58.340 33.333 0.00 0.00 0.00 4.75
5439 5687 9.507329 TTGACATCCTATATTTGATAAGAAGCC 57.493 33.333 0.00 0.00 0.00 4.35
5462 5710 5.748402 ACATATCAGCACCAAATCTCTTGA 58.252 37.500 0.00 0.00 0.00 3.02
5564 5831 2.747446 GGATGCGTGTGGAACTATGTTT 59.253 45.455 0.00 0.00 38.04 2.83
5587 5854 3.266636 CACTGGCGACAACCATACATTA 58.733 45.455 0.00 0.00 42.06 1.90
5594 5861 1.522806 GACACACTGGCGACAACCA 60.523 57.895 0.00 0.00 42.06 3.67
5597 5864 1.227527 CTGGACACACTGGCGACAA 60.228 57.895 0.00 0.00 42.06 3.18
5615 5882 1.784525 CTTCGAGGAACACACTGTCC 58.215 55.000 0.00 0.00 0.00 4.02
5619 5886 1.040646 TCAGCTTCGAGGAACACACT 58.959 50.000 0.00 0.00 0.00 3.55
5620 5887 1.996191 GATCAGCTTCGAGGAACACAC 59.004 52.381 0.00 0.00 0.00 3.82
5635 5902 1.482182 TGGATGACGGGACTTGATCAG 59.518 52.381 0.00 0.00 0.00 2.90
5636 5903 1.207089 GTGGATGACGGGACTTGATCA 59.793 52.381 0.00 0.00 0.00 2.92
5637 5904 1.482593 AGTGGATGACGGGACTTGATC 59.517 52.381 0.00 0.00 0.00 2.92
5638 5905 1.573108 AGTGGATGACGGGACTTGAT 58.427 50.000 0.00 0.00 0.00 2.57
5639 5906 1.001974 CAAGTGGATGACGGGACTTGA 59.998 52.381 0.00 0.00 45.38 3.02
5640 5907 1.442769 CAAGTGGATGACGGGACTTG 58.557 55.000 0.00 0.00 39.39 3.16
5641 5908 0.321653 GCAAGTGGATGACGGGACTT 60.322 55.000 0.00 0.00 0.00 3.01
5642 5909 1.296715 GCAAGTGGATGACGGGACT 59.703 57.895 0.00 0.00 0.00 3.85
5643 5910 1.745489 GGCAAGTGGATGACGGGAC 60.745 63.158 0.00 0.00 0.00 4.46
5644 5911 2.220586 TGGCAAGTGGATGACGGGA 61.221 57.895 0.00 0.00 0.00 5.14
5645 5912 2.040544 GTGGCAAGTGGATGACGGG 61.041 63.158 0.00 0.00 0.00 5.28
5646 5913 2.040544 GGTGGCAAGTGGATGACGG 61.041 63.158 0.00 0.00 0.00 4.79
5647 5914 1.003355 AGGTGGCAAGTGGATGACG 60.003 57.895 0.00 0.00 0.00 4.35
5648 5915 0.678048 GGAGGTGGCAAGTGGATGAC 60.678 60.000 0.00 0.00 0.00 3.06
5649 5916 0.842030 AGGAGGTGGCAAGTGGATGA 60.842 55.000 0.00 0.00 0.00 2.92
5650 5917 0.393537 GAGGAGGTGGCAAGTGGATG 60.394 60.000 0.00 0.00 0.00 3.51
5651 5918 0.548682 AGAGGAGGTGGCAAGTGGAT 60.549 55.000 0.00 0.00 0.00 3.41
5652 5919 1.152030 AGAGGAGGTGGCAAGTGGA 60.152 57.895 0.00 0.00 0.00 4.02
5653 5920 1.197430 AGAGAGGAGGTGGCAAGTGG 61.197 60.000 0.00 0.00 0.00 4.00
5654 5921 0.689623 AAGAGAGGAGGTGGCAAGTG 59.310 55.000 0.00 0.00 0.00 3.16
5655 5922 1.072965 CAAAGAGAGGAGGTGGCAAGT 59.927 52.381 0.00 0.00 0.00 3.16
5656 5923 1.612726 CCAAAGAGAGGAGGTGGCAAG 60.613 57.143 0.00 0.00 0.00 4.01
5657 5924 0.401738 CCAAAGAGAGGAGGTGGCAA 59.598 55.000 0.00 0.00 0.00 4.52
5658 5925 0.473694 TCCAAAGAGAGGAGGTGGCA 60.474 55.000 0.00 0.00 0.00 4.92
5659 5926 2.377136 TCCAAAGAGAGGAGGTGGC 58.623 57.895 0.00 0.00 0.00 5.01
5667 5934 1.338579 GCCAGACACCTCCAAAGAGAG 60.339 57.143 0.00 0.00 43.39 3.20
5668 5935 0.687354 GCCAGACACCTCCAAAGAGA 59.313 55.000 0.00 0.00 43.39 3.10
5669 5936 0.671781 CGCCAGACACCTCCAAAGAG 60.672 60.000 0.00 0.00 40.09 2.85
5670 5937 1.371183 CGCCAGACACCTCCAAAGA 59.629 57.895 0.00 0.00 0.00 2.52
5671 5938 0.535102 AACGCCAGACACCTCCAAAG 60.535 55.000 0.00 0.00 0.00 2.77
5672 5939 0.817634 CAACGCCAGACACCTCCAAA 60.818 55.000 0.00 0.00 0.00 3.28
5673 5940 1.227823 CAACGCCAGACACCTCCAA 60.228 57.895 0.00 0.00 0.00 3.53
5674 5941 2.425592 CAACGCCAGACACCTCCA 59.574 61.111 0.00 0.00 0.00 3.86
5675 5942 2.358737 CCAACGCCAGACACCTCC 60.359 66.667 0.00 0.00 0.00 4.30
5676 5943 1.227853 AACCAACGCCAGACACCTC 60.228 57.895 0.00 0.00 0.00 3.85
5677 5944 1.525995 CAACCAACGCCAGACACCT 60.526 57.895 0.00 0.00 0.00 4.00
5678 5945 1.525077 TCAACCAACGCCAGACACC 60.525 57.895 0.00 0.00 0.00 4.16
5679 5946 1.092921 TGTCAACCAACGCCAGACAC 61.093 55.000 0.00 0.00 34.59 3.67
5680 5947 0.393132 TTGTCAACCAACGCCAGACA 60.393 50.000 0.00 0.00 37.43 3.41
5681 5948 0.307760 CTTGTCAACCAACGCCAGAC 59.692 55.000 0.00 0.00 0.00 3.51
5682 5949 1.444119 GCTTGTCAACCAACGCCAGA 61.444 55.000 0.00 0.00 0.00 3.86
5683 5950 1.008538 GCTTGTCAACCAACGCCAG 60.009 57.895 0.00 0.00 0.00 4.85
5684 5951 2.829206 CGCTTGTCAACCAACGCCA 61.829 57.895 0.00 0.00 0.00 5.69
5685 5952 2.051345 CGCTTGTCAACCAACGCC 60.051 61.111 0.00 0.00 0.00 5.68
5686 5953 2.051345 CCGCTTGTCAACCAACGC 60.051 61.111 0.00 0.00 0.00 4.84
5687 5954 2.637025 CCCGCTTGTCAACCAACG 59.363 61.111 0.00 0.00 0.00 4.10
5688 5955 1.734388 AAGCCCGCTTGTCAACCAAC 61.734 55.000 0.05 0.00 34.60 3.77
5689 5956 1.040339 AAAGCCCGCTTGTCAACCAA 61.040 50.000 2.03 0.00 36.26 3.67
5690 5957 1.454847 AAAGCCCGCTTGTCAACCA 60.455 52.632 2.03 0.00 36.26 3.67
5691 5958 1.007387 CAAAGCCCGCTTGTCAACC 60.007 57.895 2.03 0.00 36.26 3.77
5692 5959 0.948678 TACAAAGCCCGCTTGTCAAC 59.051 50.000 2.03 0.00 36.26 3.18
5693 5960 1.234821 CTACAAAGCCCGCTTGTCAA 58.765 50.000 2.03 0.00 36.26 3.18
5694 5961 0.107831 ACTACAAAGCCCGCTTGTCA 59.892 50.000 2.03 0.00 36.26 3.58
5695 5962 1.235724 AACTACAAAGCCCGCTTGTC 58.764 50.000 2.03 0.00 36.26 3.18
5696 5963 1.336755 CAAACTACAAAGCCCGCTTGT 59.663 47.619 2.03 6.28 36.26 3.16
5697 5964 1.336755 ACAAACTACAAAGCCCGCTTG 59.663 47.619 2.03 0.53 36.26 4.01
5698 5965 1.687563 ACAAACTACAAAGCCCGCTT 58.312 45.000 0.00 0.00 37.98 4.68
5699 5966 1.687563 AACAAACTACAAAGCCCGCT 58.312 45.000 0.00 0.00 0.00 5.52
5700 5967 2.124122 CAAACAAACTACAAAGCCCGC 58.876 47.619 0.00 0.00 0.00 6.13
5701 5968 2.100087 ACCAAACAAACTACAAAGCCCG 59.900 45.455 0.00 0.00 0.00 6.13
5702 5969 3.713288 GACCAAACAAACTACAAAGCCC 58.287 45.455 0.00 0.00 0.00 5.19
5703 5970 3.181494 ACGACCAAACAAACTACAAAGCC 60.181 43.478 0.00 0.00 0.00 4.35
5704 5971 4.023739 ACGACCAAACAAACTACAAAGC 57.976 40.909 0.00 0.00 0.00 3.51
5705 5972 4.796312 CCAACGACCAAACAAACTACAAAG 59.204 41.667 0.00 0.00 0.00 2.77
5706 5973 4.217983 ACCAACGACCAAACAAACTACAAA 59.782 37.500 0.00 0.00 0.00 2.83
5707 5974 3.757493 ACCAACGACCAAACAAACTACAA 59.243 39.130 0.00 0.00 0.00 2.41
5708 5975 3.127203 CACCAACGACCAAACAAACTACA 59.873 43.478 0.00 0.00 0.00 2.74
5709 5976 3.487879 CCACCAACGACCAAACAAACTAC 60.488 47.826 0.00 0.00 0.00 2.73
5710 5977 2.683867 CCACCAACGACCAAACAAACTA 59.316 45.455 0.00 0.00 0.00 2.24
5711 5978 1.474879 CCACCAACGACCAAACAAACT 59.525 47.619 0.00 0.00 0.00 2.66
5712 5979 1.202817 ACCACCAACGACCAAACAAAC 59.797 47.619 0.00 0.00 0.00 2.93
5713 5980 1.546961 ACCACCAACGACCAAACAAA 58.453 45.000 0.00 0.00 0.00 2.83
5714 5981 1.202582 CAACCACCAACGACCAAACAA 59.797 47.619 0.00 0.00 0.00 2.83
5715 5982 0.811915 CAACCACCAACGACCAAACA 59.188 50.000 0.00 0.00 0.00 2.83
5716 5983 0.812549 ACAACCACCAACGACCAAAC 59.187 50.000 0.00 0.00 0.00 2.93
5717 5984 1.096416 GACAACCACCAACGACCAAA 58.904 50.000 0.00 0.00 0.00 3.28
5718 5985 0.253610 AGACAACCACCAACGACCAA 59.746 50.000 0.00 0.00 0.00 3.67
5719 5986 0.253610 AAGACAACCACCAACGACCA 59.746 50.000 0.00 0.00 0.00 4.02
5720 5987 0.942252 GAAGACAACCACCAACGACC 59.058 55.000 0.00 0.00 0.00 4.79
5721 5988 0.580104 CGAAGACAACCACCAACGAC 59.420 55.000 0.00 0.00 0.00 4.34
5722 5989 0.531090 CCGAAGACAACCACCAACGA 60.531 55.000 0.00 0.00 0.00 3.85
5723 5990 0.531090 TCCGAAGACAACCACCAACG 60.531 55.000 0.00 0.00 0.00 4.10
5724 5991 0.942252 GTCCGAAGACAACCACCAAC 59.058 55.000 0.00 0.00 42.99 3.77
5725 5992 0.834612 AGTCCGAAGACAACCACCAA 59.165 50.000 0.00 0.00 46.15 3.67
5726 5993 0.834612 AAGTCCGAAGACAACCACCA 59.165 50.000 0.00 0.00 46.15 4.17
5727 5994 1.226746 CAAGTCCGAAGACAACCACC 58.773 55.000 0.00 0.00 46.15 4.61
5728 5995 0.586802 GCAAGTCCGAAGACAACCAC 59.413 55.000 0.00 0.00 46.15 4.16
5729 5996 0.534203 GGCAAGTCCGAAGACAACCA 60.534 55.000 0.00 0.00 46.15 3.67
5730 5997 0.250338 AGGCAAGTCCGAAGACAACC 60.250 55.000 0.00 0.00 46.15 3.77
5731 5998 0.868406 CAGGCAAGTCCGAAGACAAC 59.132 55.000 0.00 0.00 46.15 3.32
5732 5999 0.250295 CCAGGCAAGTCCGAAGACAA 60.250 55.000 0.00 0.00 46.15 3.18
5733 6000 1.371183 CCAGGCAAGTCCGAAGACA 59.629 57.895 0.00 0.00 46.15 3.41
5734 6001 1.376037 CCCAGGCAAGTCCGAAGAC 60.376 63.158 0.00 0.00 43.89 3.01
5735 6002 1.841556 ACCCAGGCAAGTCCGAAGA 60.842 57.895 0.00 0.00 40.77 2.87
5736 6003 1.672356 CACCCAGGCAAGTCCGAAG 60.672 63.158 0.00 0.00 40.77 3.79
5737 6004 2.429930 CACCCAGGCAAGTCCGAA 59.570 61.111 0.00 0.00 40.77 4.30
5738 6005 2.847234 ACACCCAGGCAAGTCCGA 60.847 61.111 0.00 0.00 40.77 4.55
5739 6006 2.669569 CACACCCAGGCAAGTCCG 60.670 66.667 0.00 0.00 40.77 4.79
5740 6007 2.282462 CCACACCCAGGCAAGTCC 60.282 66.667 0.00 0.00 0.00 3.85
5741 6008 1.898574 CACCACACCCAGGCAAGTC 60.899 63.158 0.00 0.00 0.00 3.01
5742 6009 2.195683 CACCACACCCAGGCAAGT 59.804 61.111 0.00 0.00 0.00 3.16
5743 6010 1.455383 GAACACCACACCCAGGCAAG 61.455 60.000 0.00 0.00 0.00 4.01
5744 6011 1.454847 GAACACCACACCCAGGCAA 60.455 57.895 0.00 0.00 0.00 4.52
5745 6012 2.194597 GAACACCACACCCAGGCA 59.805 61.111 0.00 0.00 0.00 4.75
5746 6013 2.978010 CGAACACCACACCCAGGC 60.978 66.667 0.00 0.00 0.00 4.85
5747 6014 1.891919 CACGAACACCACACCCAGG 60.892 63.158 0.00 0.00 0.00 4.45
5748 6015 2.542907 GCACGAACACCACACCCAG 61.543 63.158 0.00 0.00 0.00 4.45
5749 6016 1.687297 TAGCACGAACACCACACCCA 61.687 55.000 0.00 0.00 0.00 4.51
5750 6017 1.070105 TAGCACGAACACCACACCC 59.930 57.895 0.00 0.00 0.00 4.61
5751 6018 1.554042 CGTAGCACGAACACCACACC 61.554 60.000 3.04 0.00 46.05 4.16
5752 6019 1.850640 CGTAGCACGAACACCACAC 59.149 57.895 3.04 0.00 46.05 3.82
5753 6020 4.329619 CGTAGCACGAACACCACA 57.670 55.556 3.04 0.00 46.05 4.17
5762 6029 1.782023 GCGAACAACAATCGTAGCACG 60.782 52.381 2.79 2.79 44.19 5.34
5763 6030 1.193650 TGCGAACAACAATCGTAGCAC 59.806 47.619 0.00 0.00 42.15 4.40
5764 6031 1.459209 CTGCGAACAACAATCGTAGCA 59.541 47.619 1.40 0.00 43.89 3.49
5765 6032 2.145053 CTGCGAACAACAATCGTAGC 57.855 50.000 1.40 0.00 43.89 3.58
5767 6034 0.436913 CGCTGCGAACAACAATCGTA 59.563 50.000 18.66 0.00 42.15 3.43
5768 6035 1.204062 CGCTGCGAACAACAATCGT 59.796 52.632 18.66 0.00 42.15 3.73
5769 6036 0.517132 CTCGCTGCGAACAACAATCG 60.517 55.000 25.86 6.97 42.99 3.34
5770 6037 0.512952 ACTCGCTGCGAACAACAATC 59.487 50.000 25.86 0.00 34.74 2.67
5771 6038 0.235665 CACTCGCTGCGAACAACAAT 59.764 50.000 25.86 2.89 34.74 2.71
5772 6039 0.808060 TCACTCGCTGCGAACAACAA 60.808 50.000 25.86 5.73 34.74 2.83
5773 6040 0.599991 ATCACTCGCTGCGAACAACA 60.600 50.000 25.86 8.57 34.74 3.33
5774 6041 1.346365 TATCACTCGCTGCGAACAAC 58.654 50.000 25.86 0.00 34.74 3.32
5775 6042 2.073117 TTATCACTCGCTGCGAACAA 57.927 45.000 25.86 13.59 34.74 2.83
5776 6043 1.926510 CATTATCACTCGCTGCGAACA 59.073 47.619 25.86 12.51 34.74 3.18
5777 6044 1.927174 ACATTATCACTCGCTGCGAAC 59.073 47.619 25.86 0.00 34.74 3.95
5778 6045 2.293677 ACATTATCACTCGCTGCGAA 57.706 45.000 25.86 11.91 34.74 4.70
5779 6046 2.159240 AGAACATTATCACTCGCTGCGA 60.159 45.455 24.43 24.43 0.00 5.10
5780 6047 2.196749 AGAACATTATCACTCGCTGCG 58.803 47.619 17.25 17.25 0.00 5.18
5781 6048 5.914085 ATAAGAACATTATCACTCGCTGC 57.086 39.130 0.00 0.00 0.00 5.25
5782 6049 8.581057 AAGTATAAGAACATTATCACTCGCTG 57.419 34.615 0.00 0.00 0.00 5.18
5795 6062 9.998106 GAGGGCAGAATTATAAGTATAAGAACA 57.002 33.333 0.00 0.00 32.24 3.18
5804 6071 8.885346 AGCTTTATAGAGGGCAGAATTATAAGT 58.115 33.333 0.00 0.00 0.00 2.24
5807 6074 9.321532 TGTAGCTTTATAGAGGGCAGAATTATA 57.678 33.333 0.00 0.00 0.00 0.98
5808 6075 8.207350 TGTAGCTTTATAGAGGGCAGAATTAT 57.793 34.615 0.00 0.00 0.00 1.28
5809 6076 7.290248 ACTGTAGCTTTATAGAGGGCAGAATTA 59.710 37.037 0.00 0.00 0.00 1.40
5810 6077 6.100424 ACTGTAGCTTTATAGAGGGCAGAATT 59.900 38.462 0.00 0.00 0.00 2.17
5811 6078 5.604650 ACTGTAGCTTTATAGAGGGCAGAAT 59.395 40.000 0.00 0.00 0.00 2.40
5812 6079 4.962995 ACTGTAGCTTTATAGAGGGCAGAA 59.037 41.667 0.00 0.00 0.00 3.02
5813 6080 4.547671 ACTGTAGCTTTATAGAGGGCAGA 58.452 43.478 0.00 0.00 0.00 4.26
5814 6081 4.946478 ACTGTAGCTTTATAGAGGGCAG 57.054 45.455 0.00 0.00 0.00 4.85
5815 6082 5.279506 GCATACTGTAGCTTTATAGAGGGCA 60.280 44.000 0.00 0.00 0.00 5.36
5816 6083 5.172205 GCATACTGTAGCTTTATAGAGGGC 58.828 45.833 0.00 0.00 0.00 5.19
5817 6084 5.482175 AGGCATACTGTAGCTTTATAGAGGG 59.518 44.000 0.00 0.00 0.00 4.30
5818 6085 6.597832 AGGCATACTGTAGCTTTATAGAGG 57.402 41.667 0.00 0.00 0.00 3.69
5819 6086 7.629652 GCCTAGGCATACTGTAGCTTTATAGAG 60.630 44.444 29.33 0.00 41.49 2.43
5820 6087 6.153000 GCCTAGGCATACTGTAGCTTTATAGA 59.847 42.308 29.33 0.00 41.49 1.98
5821 6088 6.334202 GCCTAGGCATACTGTAGCTTTATAG 58.666 44.000 29.33 0.00 41.49 1.31
5822 6089 5.105877 CGCCTAGGCATACTGTAGCTTTATA 60.106 44.000 32.47 0.00 42.06 0.98
5823 6090 4.322049 CGCCTAGGCATACTGTAGCTTTAT 60.322 45.833 32.47 0.00 42.06 1.40
5824 6091 3.005472 CGCCTAGGCATACTGTAGCTTTA 59.995 47.826 32.47 0.00 42.06 1.85
5825 6092 2.224066 CGCCTAGGCATACTGTAGCTTT 60.224 50.000 32.47 2.71 42.06 3.51
5826 6093 1.341531 CGCCTAGGCATACTGTAGCTT 59.658 52.381 32.47 4.86 42.06 3.74
5827 6094 0.962489 CGCCTAGGCATACTGTAGCT 59.038 55.000 32.47 0.00 42.06 3.32
5828 6095 0.674534 ACGCCTAGGCATACTGTAGC 59.325 55.000 32.47 2.33 42.06 3.58
5829 6096 3.147629 AGTACGCCTAGGCATACTGTAG 58.852 50.000 35.18 18.63 46.35 2.74
5830 6097 3.219176 AGTACGCCTAGGCATACTGTA 57.781 47.619 35.18 23.83 46.35 2.74
5831 6098 2.068834 AGTACGCCTAGGCATACTGT 57.931 50.000 35.18 24.80 46.35 3.55
5834 6101 2.621998 TCAAGAGTACGCCTAGGCATAC 59.378 50.000 28.44 28.44 39.70 2.39
5835 6102 2.940158 TCAAGAGTACGCCTAGGCATA 58.060 47.619 32.47 20.71 42.06 3.14
5836 6103 1.776662 TCAAGAGTACGCCTAGGCAT 58.223 50.000 32.47 21.96 42.06 4.40
5837 6104 1.552578 TTCAAGAGTACGCCTAGGCA 58.447 50.000 32.47 12.45 42.06 4.75
5838 6105 2.667473 TTTCAAGAGTACGCCTAGGC 57.333 50.000 24.75 24.75 37.85 3.93
5860 6127 2.028130 TGGATGCGTGTGGAACTTTTT 58.972 42.857 0.00 0.00 38.04 1.94
5861 6128 1.336755 GTGGATGCGTGTGGAACTTTT 59.663 47.619 0.00 0.00 38.04 2.27
5862 6129 0.951558 GTGGATGCGTGTGGAACTTT 59.048 50.000 0.00 0.00 38.04 2.66
5863 6130 0.179032 TGTGGATGCGTGTGGAACTT 60.179 50.000 0.00 0.00 38.04 2.66
5864 6131 0.036732 ATGTGGATGCGTGTGGAACT 59.963 50.000 0.00 0.00 38.04 3.01
5865 6132 0.168788 CATGTGGATGCGTGTGGAAC 59.831 55.000 0.00 0.00 37.35 3.62
5866 6133 0.036022 TCATGTGGATGCGTGTGGAA 59.964 50.000 0.00 0.00 0.00 3.53
5867 6134 0.036022 TTCATGTGGATGCGTGTGGA 59.964 50.000 0.00 0.00 0.00 4.02
5868 6135 1.097232 ATTCATGTGGATGCGTGTGG 58.903 50.000 0.00 0.00 0.00 4.17
5869 6136 2.938451 ACTATTCATGTGGATGCGTGTG 59.062 45.455 0.00 0.00 0.00 3.82
5870 6137 3.266510 ACTATTCATGTGGATGCGTGT 57.733 42.857 0.00 0.00 0.00 4.49
5871 6138 5.733226 TTTACTATTCATGTGGATGCGTG 57.267 39.130 0.00 0.00 0.00 5.34
5872 6139 5.880332 ACTTTTACTATTCATGTGGATGCGT 59.120 36.000 0.00 0.00 0.00 5.24
5873 6140 6.363577 ACTTTTACTATTCATGTGGATGCG 57.636 37.500 0.00 0.00 0.00 4.73
5874 6141 6.907212 CGAACTTTTACTATTCATGTGGATGC 59.093 38.462 0.00 0.00 0.00 3.91
5875 6142 7.904977 CACGAACTTTTACTATTCATGTGGATG 59.095 37.037 0.00 0.00 0.00 3.51
5876 6143 7.414098 GCACGAACTTTTACTATTCATGTGGAT 60.414 37.037 0.00 0.00 0.00 3.41
5877 6144 6.128391 GCACGAACTTTTACTATTCATGTGGA 60.128 38.462 0.00 0.00 0.00 4.02
5878 6145 6.021596 GCACGAACTTTTACTATTCATGTGG 58.978 40.000 0.00 0.00 0.00 4.17
5879 6146 6.831769 AGCACGAACTTTTACTATTCATGTG 58.168 36.000 0.00 0.00 0.00 3.21
5880 6147 7.601130 TGTAGCACGAACTTTTACTATTCATGT 59.399 33.333 0.00 0.00 0.00 3.21
5881 6148 7.898309 GTGTAGCACGAACTTTTACTATTCATG 59.102 37.037 0.00 0.00 0.00 3.07
5882 6149 7.817962 AGTGTAGCACGAACTTTTACTATTCAT 59.182 33.333 0.00 0.00 39.64 2.57
5883 6150 7.149973 AGTGTAGCACGAACTTTTACTATTCA 58.850 34.615 0.00 0.00 39.64 2.57
5884 6151 7.461156 CGAGTGTAGCACGAACTTTTACTATTC 60.461 40.741 0.00 0.00 39.64 1.75
5885 6152 6.307318 CGAGTGTAGCACGAACTTTTACTATT 59.693 38.462 0.00 0.00 39.64 1.73
5886 6153 5.798934 CGAGTGTAGCACGAACTTTTACTAT 59.201 40.000 0.00 0.00 39.64 2.12
5887 6154 5.149273 CGAGTGTAGCACGAACTTTTACTA 58.851 41.667 0.00 0.00 39.64 1.82
5888 6155 3.979495 CGAGTGTAGCACGAACTTTTACT 59.021 43.478 0.00 0.00 39.64 2.24
5889 6156 3.732721 ACGAGTGTAGCACGAACTTTTAC 59.267 43.478 0.00 0.00 39.64 2.01
5890 6157 3.968649 ACGAGTGTAGCACGAACTTTTA 58.031 40.909 0.00 0.00 39.64 1.52
5891 6158 2.817901 ACGAGTGTAGCACGAACTTTT 58.182 42.857 0.00 0.00 39.64 2.27
5892 6159 2.503920 ACGAGTGTAGCACGAACTTT 57.496 45.000 0.00 0.00 39.64 2.66
5893 6160 2.124903 CAACGAGTGTAGCACGAACTT 58.875 47.619 0.00 0.00 39.64 2.66
5894 6161 1.066605 ACAACGAGTGTAGCACGAACT 59.933 47.619 0.00 0.00 39.29 3.01
5895 6162 1.484356 ACAACGAGTGTAGCACGAAC 58.516 50.000 0.00 0.00 39.29 3.95
5896 6163 2.212869 AACAACGAGTGTAGCACGAA 57.787 45.000 0.00 0.00 40.60 3.85
5897 6164 2.212869 AAACAACGAGTGTAGCACGA 57.787 45.000 0.00 0.00 40.60 4.35
5898 6165 2.790448 TGTAAACAACGAGTGTAGCACG 59.210 45.455 0.00 0.00 40.60 5.34
5899 6166 4.782252 TTGTAAACAACGAGTGTAGCAC 57.218 40.909 0.00 0.00 40.60 4.40
5913 6180 7.042925 ACAAGAACACTATCACTCGTTGTAAAC 60.043 37.037 0.00 0.00 45.31 2.01
5914 6181 6.982141 ACAAGAACACTATCACTCGTTGTAAA 59.018 34.615 0.00 0.00 0.00 2.01
5915 6182 6.509656 ACAAGAACACTATCACTCGTTGTAA 58.490 36.000 0.00 0.00 0.00 2.41
5916 6183 6.080648 ACAAGAACACTATCACTCGTTGTA 57.919 37.500 0.00 0.00 0.00 2.41
5917 6184 4.945246 ACAAGAACACTATCACTCGTTGT 58.055 39.130 0.00 0.00 0.00 3.32
5918 6185 6.150318 AGTACAAGAACACTATCACTCGTTG 58.850 40.000 0.00 0.00 0.00 4.10
5919 6186 6.328641 AGTACAAGAACACTATCACTCGTT 57.671 37.500 0.00 0.00 0.00 3.85
5920 6187 5.961396 AGTACAAGAACACTATCACTCGT 57.039 39.130 0.00 0.00 0.00 4.18
5921 6188 9.999009 TTATAAGTACAAGAACACTATCACTCG 57.001 33.333 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.