Multiple sequence alignment - TraesCS7B01G136600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G136600 chr7B 100.000 8311 0 0 1 8311 168364178 168355868 0.000000e+00 15348
1 TraesCS7B01G136600 chr7B 94.059 101 4 2 2686 2785 473406783 473406684 1.440000e-32 152
2 TraesCS7B01G136600 chr7D 95.666 5422 131 43 254 5645 204457228 204451881 0.000000e+00 8615
3 TraesCS7B01G136600 chr7D 94.286 1890 71 19 5705 7581 204451880 204450015 0.000000e+00 2857
4 TraesCS7B01G136600 chr7D 89.706 204 16 3 8070 8271 204449592 204449392 1.070000e-63 255
5 TraesCS7B01G136600 chr7D 90.341 176 15 2 7892 8066 204449863 204449689 6.490000e-56 230
6 TraesCS7B01G136600 chr7D 91.473 129 8 1 123 248 204457681 204457553 3.080000e-39 174
7 TraesCS7B01G136600 chr7A 93.160 2544 95 38 5082 7595 216425413 216422919 0.000000e+00 3661
8 TraesCS7B01G136600 chr7A 96.311 2223 66 11 2781 4999 216427772 216425562 0.000000e+00 3637
9 TraesCS7B01G136600 chr7A 92.573 2114 109 17 487 2571 216429914 216427820 0.000000e+00 2990
10 TraesCS7B01G136600 chr7A 86.146 397 26 11 7918 8309 216422452 216422080 1.300000e-107 401
11 TraesCS7B01G136600 chr7A 92.727 110 8 0 17 126 163025782 163025673 8.630000e-35 159
12 TraesCS7B01G136600 chr7A 89.431 123 12 1 6 128 316273107 316272986 4.020000e-33 154
13 TraesCS7B01G136600 chr7A 96.721 61 2 0 5036 5096 216425430 216425370 1.480000e-17 102
14 TraesCS7B01G136600 chr2B 88.344 163 19 0 4063 4225 201373505 201373343 6.580000e-46 196
15 TraesCS7B01G136600 chr2B 87.179 156 17 2 4683 4835 201372882 201372727 3.080000e-39 174
16 TraesCS7B01G136600 chr2B 89.655 116 8 3 2671 2785 464611191 464611079 2.420000e-30 145
17 TraesCS7B01G136600 chr3A 91.667 120 9 1 13 132 265545031 265545149 1.860000e-36 165
18 TraesCS7B01G136600 chr3A 93.137 102 5 2 2686 2786 269394412 269394312 1.870000e-31 148
19 TraesCS7B01G136600 chr3A 90.179 112 7 4 2674 2784 109150853 109150961 8.700000e-30 143
20 TraesCS7B01G136600 chr3A 84.553 123 19 0 3325 3447 504160489 504160611 1.130000e-23 122
21 TraesCS7B01G136600 chr2D 85.897 156 19 2 4683 4835 143307536 143307381 6.670000e-36 163
22 TraesCS7B01G136600 chr2D 91.379 116 9 1 17 131 444766894 444767009 3.110000e-34 158
23 TraesCS7B01G136600 chr2A 85.897 156 19 2 4683 4835 158043761 158043916 6.670000e-36 163
24 TraesCS7B01G136600 chr3D 89.516 124 12 1 12 134 469379008 469379131 1.120000e-33 156
25 TraesCS7B01G136600 chr3D 83.810 105 17 0 2370 2474 381013803 381013907 5.310000e-17 100
26 TraesCS7B01G136600 chr4D 91.892 111 5 4 2677 2786 323929565 323929672 1.440000e-32 152
27 TraesCS7B01G136600 chr3B 91.667 108 9 0 17 124 308390939 308391046 5.200000e-32 150
28 TraesCS7B01G136600 chr3B 90.991 111 9 1 16 125 693344362 693344472 1.870000e-31 148
29 TraesCS7B01G136600 chr5D 93.069 101 7 0 2684 2784 65990590 65990490 1.870000e-31 148
30 TraesCS7B01G136600 chr5D 91.589 107 7 2 2680 2785 205794749 205794644 6.720000e-31 147
31 TraesCS7B01G136600 chrUn 88.983 118 12 1 2672 2788 71312969 71312852 2.420000e-30 145
32 TraesCS7B01G136600 chr6A 89.381 113 12 0 17 129 459909977 459910089 8.700000e-30 143
33 TraesCS7B01G136600 chr1A 88.696 115 11 2 17 129 474447274 474447160 1.120000e-28 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G136600 chr7B 168355868 168364178 8310 True 15348.0 15348 100.0000 1 8311 1 chr7B.!!$R1 8310
1 TraesCS7B01G136600 chr7D 204449392 204457681 8289 True 2426.2 8615 92.2944 123 8271 5 chr7D.!!$R1 8148
2 TraesCS7B01G136600 chr7A 216422080 216429914 7834 True 2158.2 3661 92.9822 487 8309 5 chr7A.!!$R3 7822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 727 0.179070 GAGGGCTAGGGAGAAAAGCG 60.179 60.000 0.00 0.0 37.11 4.68 F
816 1141 0.523968 GTCAACACGGCTCGCGTATA 60.524 55.000 5.77 0.0 0.00 1.47 F
869 1195 0.692756 AACCCAAACCCAAACCCAGG 60.693 55.000 0.00 0.0 0.00 4.45 F
2124 2488 1.959989 GCCTGGGTTTGGATAGGTTGG 60.960 57.143 0.00 0.0 32.85 3.77 F
2777 3158 0.322187 CACTTACTTTGGGACGGGGG 60.322 60.000 0.00 0.0 0.00 5.40 F
3358 3739 1.649271 ATCTCCTGGTCCCCCAATGC 61.649 60.000 0.00 0.0 41.27 3.56 F
4471 4855 3.498397 CGGACAAGCTTATCTGTGTTGTT 59.502 43.478 5.34 0.0 31.57 2.83 F
5887 6379 0.250467 ATGCGGACTTTGAGCAGTGT 60.250 50.000 0.00 0.0 44.55 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 1971 0.319555 ATTATGCGATCCACGGTCCG 60.320 55.000 10.48 10.48 42.83 4.79 R
2774 3155 0.261696 ATGCCACCAAATACTCCCCC 59.738 55.000 0.00 0.00 0.00 5.40 R
2775 3156 3.525800 ATATGCCACCAAATACTCCCC 57.474 47.619 0.00 0.00 0.00 4.81 R
3807 4188 0.320683 TCCGATGTGTGACTTGGCAG 60.321 55.000 0.00 0.00 0.00 4.85 R
3808 4189 0.602638 GTCCGATGTGTGACTTGGCA 60.603 55.000 0.00 0.00 0.00 4.92 R
4489 4873 1.493950 GATTGACTCGGCCATGCTCG 61.494 60.000 2.24 0.00 0.00 5.03 R
6383 6882 0.326595 TAGGCTGCGTTTGGGATCAA 59.673 50.000 0.00 0.00 0.00 2.57 R
7868 8605 0.032952 GGTGTGGCTACGTCAAGTGA 59.967 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.560124 AAGATTTTCTATGATACTCCCTCTGT 57.440 34.615 0.00 0.00 0.00 3.41
28 29 8.560124 AGATTTTCTATGATACTCCCTCTGTT 57.440 34.615 0.00 0.00 0.00 3.16
29 30 8.646900 AGATTTTCTATGATACTCCCTCTGTTC 58.353 37.037 0.00 0.00 0.00 3.18
30 31 7.733773 TTTTCTATGATACTCCCTCTGTTCA 57.266 36.000 0.00 0.00 0.00 3.18
31 32 6.968263 TTCTATGATACTCCCTCTGTTCAG 57.032 41.667 0.00 0.00 0.00 3.02
32 33 6.019656 TCTATGATACTCCCTCTGTTCAGT 57.980 41.667 0.00 0.00 0.00 3.41
33 34 6.436027 TCTATGATACTCCCTCTGTTCAGTT 58.564 40.000 0.00 0.00 0.00 3.16
34 35 6.897966 TCTATGATACTCCCTCTGTTCAGTTT 59.102 38.462 0.00 0.00 0.00 2.66
35 36 5.825593 TGATACTCCCTCTGTTCAGTTTT 57.174 39.130 0.00 0.00 0.00 2.43
36 37 6.928348 TGATACTCCCTCTGTTCAGTTTTA 57.072 37.500 0.00 0.00 0.00 1.52
37 38 7.496346 TGATACTCCCTCTGTTCAGTTTTAT 57.504 36.000 0.00 0.00 0.00 1.40
38 39 8.603898 TGATACTCCCTCTGTTCAGTTTTATA 57.396 34.615 0.00 0.00 0.00 0.98
39 40 9.042450 TGATACTCCCTCTGTTCAGTTTTATAA 57.958 33.333 0.00 0.00 0.00 0.98
40 41 9.535878 GATACTCCCTCTGTTCAGTTTTATAAG 57.464 37.037 0.00 0.00 0.00 1.73
41 42 7.317722 ACTCCCTCTGTTCAGTTTTATAAGT 57.682 36.000 0.00 0.00 0.00 2.24
42 43 7.387643 ACTCCCTCTGTTCAGTTTTATAAGTC 58.612 38.462 0.00 0.00 0.00 3.01
43 44 7.016268 ACTCCCTCTGTTCAGTTTTATAAGTCA 59.984 37.037 0.00 0.00 0.00 3.41
44 45 7.918076 TCCCTCTGTTCAGTTTTATAAGTCAT 58.082 34.615 0.00 0.00 0.00 3.06
45 46 8.383175 TCCCTCTGTTCAGTTTTATAAGTCATT 58.617 33.333 0.00 0.00 0.00 2.57
46 47 8.669243 CCCTCTGTTCAGTTTTATAAGTCATTC 58.331 37.037 0.00 0.00 0.00 2.67
47 48 8.669243 CCTCTGTTCAGTTTTATAAGTCATTCC 58.331 37.037 0.00 0.00 0.00 3.01
48 49 9.219603 CTCTGTTCAGTTTTATAAGTCATTCCA 57.780 33.333 0.00 0.00 0.00 3.53
49 50 9.219603 TCTGTTCAGTTTTATAAGTCATTCCAG 57.780 33.333 0.00 0.00 0.00 3.86
50 51 9.219603 CTGTTCAGTTTTATAAGTCATTCCAGA 57.780 33.333 0.00 0.00 0.00 3.86
51 52 8.999431 TGTTCAGTTTTATAAGTCATTCCAGAC 58.001 33.333 0.00 0.00 38.81 3.51
52 53 8.999431 GTTCAGTTTTATAAGTCATTCCAGACA 58.001 33.333 0.00 0.00 40.98 3.41
53 54 9.567776 TTCAGTTTTATAAGTCATTCCAGACAA 57.432 29.630 0.00 0.00 40.98 3.18
54 55 9.219603 TCAGTTTTATAAGTCATTCCAGACAAG 57.780 33.333 0.00 0.00 40.98 3.16
55 56 9.003658 CAGTTTTATAAGTCATTCCAGACAAGT 57.996 33.333 0.00 0.00 40.98 3.16
56 57 9.003658 AGTTTTATAAGTCATTCCAGACAAGTG 57.996 33.333 0.00 0.00 40.98 3.16
57 58 8.999431 GTTTTATAAGTCATTCCAGACAAGTGA 58.001 33.333 0.00 0.00 40.98 3.41
58 59 9.567776 TTTTATAAGTCATTCCAGACAAGTGAA 57.432 29.630 0.00 0.00 40.98 3.18
59 60 9.567776 TTTATAAGTCATTCCAGACAAGTGAAA 57.432 29.630 0.00 0.00 40.98 2.69
60 61 9.739276 TTATAAGTCATTCCAGACAAGTGAAAT 57.261 29.630 0.00 0.00 40.98 2.17
61 62 6.966534 AAGTCATTCCAGACAAGTGAAATT 57.033 33.333 0.00 0.00 40.98 1.82
62 63 6.323203 AGTCATTCCAGACAAGTGAAATTG 57.677 37.500 0.00 0.00 40.98 2.32
63 64 6.064060 AGTCATTCCAGACAAGTGAAATTGA 58.936 36.000 0.00 0.00 40.98 2.57
64 65 6.206243 AGTCATTCCAGACAAGTGAAATTGAG 59.794 38.462 0.00 0.00 40.98 3.02
65 66 4.836125 TTCCAGACAAGTGAAATTGAGC 57.164 40.909 0.00 0.00 34.20 4.26
66 67 4.090761 TCCAGACAAGTGAAATTGAGCT 57.909 40.909 0.00 0.00 34.20 4.09
67 68 3.817084 TCCAGACAAGTGAAATTGAGCTG 59.183 43.478 0.00 4.76 36.65 4.24
68 69 3.567164 CCAGACAAGTGAAATTGAGCTGT 59.433 43.478 0.00 0.00 35.92 4.40
69 70 4.037208 CCAGACAAGTGAAATTGAGCTGTT 59.963 41.667 0.00 0.00 35.92 3.16
70 71 5.450965 CCAGACAAGTGAAATTGAGCTGTTT 60.451 40.000 0.00 0.00 35.92 2.83
71 72 6.038356 CAGACAAGTGAAATTGAGCTGTTTT 58.962 36.000 0.00 0.00 34.50 2.43
72 73 7.195646 CAGACAAGTGAAATTGAGCTGTTTTA 58.804 34.615 0.00 0.00 34.50 1.52
73 74 7.166473 CAGACAAGTGAAATTGAGCTGTTTTAC 59.834 37.037 0.00 0.00 34.50 2.01
74 75 6.862209 ACAAGTGAAATTGAGCTGTTTTACA 58.138 32.000 0.00 0.00 34.20 2.41
75 76 6.751888 ACAAGTGAAATTGAGCTGTTTTACAC 59.248 34.615 0.00 0.00 34.20 2.90
76 77 6.449635 AGTGAAATTGAGCTGTTTTACACA 57.550 33.333 0.00 0.00 0.00 3.72
77 78 7.043854 CAAGTGAAATTGAGCTGTTTTACACAG 60.044 37.037 0.00 0.00 43.08 3.66
98 99 8.076178 ACACAGTGTCTGAAATATTTACAAAGC 58.924 33.333 0.00 0.00 35.18 3.51
99 100 7.538678 CACAGTGTCTGAAATATTTACAAAGCC 59.461 37.037 0.00 0.00 35.18 4.35
100 101 7.448469 ACAGTGTCTGAAATATTTACAAAGCCT 59.552 33.333 0.00 0.00 35.18 4.58
101 102 8.299570 CAGTGTCTGAAATATTTACAAAGCCTT 58.700 33.333 0.00 0.00 32.44 4.35
102 103 9.515226 AGTGTCTGAAATATTTACAAAGCCTTA 57.485 29.630 0.00 0.00 0.00 2.69
118 119 8.306761 ACAAAGCCTTATAAAAATGAACAGAGG 58.693 33.333 0.00 0.00 0.00 3.69
119 120 7.410120 AAGCCTTATAAAAATGAACAGAGGG 57.590 36.000 0.00 0.00 0.00 4.30
120 121 6.731467 AGCCTTATAAAAATGAACAGAGGGA 58.269 36.000 0.00 0.00 0.00 4.20
121 122 6.830838 AGCCTTATAAAAATGAACAGAGGGAG 59.169 38.462 0.00 0.00 0.00 4.30
211 215 3.743534 TAAATTCGGGCGGAGGGCG 62.744 63.158 0.00 0.00 44.92 6.13
248 252 5.622233 GCTCCGGAAAAATTATGCAGTTTCT 60.622 40.000 5.23 0.00 31.94 2.52
250 254 7.639113 TCCGGAAAAATTATGCAGTTTCTAT 57.361 32.000 0.00 0.00 31.94 1.98
268 591 0.390860 ATCCCTACAGCTGATGCGTC 59.609 55.000 23.35 0.00 45.42 5.19
278 601 0.319040 CTGATGCGTCCGTGGATAGG 60.319 60.000 2.83 0.00 0.00 2.57
298 621 1.029681 CACGAGGGTCGGATCATACA 58.970 55.000 0.86 0.00 45.59 2.29
311 634 8.508875 GGTCGGATCATACAAAAACTTCTAAAA 58.491 33.333 0.00 0.00 0.00 1.52
363 687 5.251847 AAATAGTGATTTTTGGCCCGGCC 62.252 47.826 22.81 22.81 39.65 6.13
403 727 0.179070 GAGGGCTAGGGAGAAAAGCG 60.179 60.000 0.00 0.00 37.11 4.68
410 734 2.563427 GGAGAAAAGCGGTGCAGC 59.437 61.111 5.64 5.64 37.41 5.25
439 763 2.917172 TTTTTCGAGGGTACGCCAC 58.083 52.632 6.27 0.66 36.17 5.01
440 764 0.945265 TTTTTCGAGGGTACGCCACG 60.945 55.000 16.69 16.69 37.41 4.94
441 765 1.804396 TTTTCGAGGGTACGCCACGA 61.804 55.000 19.80 19.80 40.88 4.35
442 766 1.804396 TTTCGAGGGTACGCCACGAA 61.804 55.000 26.00 26.00 45.42 3.85
443 767 1.804396 TTCGAGGGTACGCCACGAAA 61.804 55.000 26.87 16.82 44.78 3.46
514 839 2.747446 AGTGCACAAACGTGAAAGAAGT 59.253 40.909 21.04 0.00 36.43 3.01
806 1131 1.564622 CAAGCGTCAGTCAACACGG 59.435 57.895 0.00 0.00 36.50 4.94
808 1133 2.644555 AAGCGTCAGTCAACACGGCT 62.645 55.000 0.00 0.00 36.50 5.52
810 1135 2.365068 CGTCAGTCAACACGGCTCG 61.365 63.158 0.00 0.00 32.19 5.03
811 1136 2.355837 TCAGTCAACACGGCTCGC 60.356 61.111 0.00 0.00 0.00 5.03
812 1137 3.767230 CAGTCAACACGGCTCGCG 61.767 66.667 0.00 0.00 0.00 5.87
813 1138 4.280494 AGTCAACACGGCTCGCGT 62.280 61.111 5.77 0.00 0.00 6.01
814 1139 2.429571 GTCAACACGGCTCGCGTA 60.430 61.111 5.77 0.00 0.00 4.42
815 1140 1.804326 GTCAACACGGCTCGCGTAT 60.804 57.895 5.77 0.00 0.00 3.06
816 1141 0.523968 GTCAACACGGCTCGCGTATA 60.524 55.000 5.77 0.00 0.00 1.47
817 1142 0.523968 TCAACACGGCTCGCGTATAC 60.524 55.000 5.77 0.00 0.00 1.47
818 1143 1.584483 AACACGGCTCGCGTATACG 60.584 57.895 20.87 20.87 43.27 3.06
859 1185 3.751479 ATTCTGAGCAAAACCCAAACC 57.249 42.857 0.00 0.00 0.00 3.27
860 1186 1.408969 TCTGAGCAAAACCCAAACCC 58.591 50.000 0.00 0.00 0.00 4.11
861 1187 1.118838 CTGAGCAAAACCCAAACCCA 58.881 50.000 0.00 0.00 0.00 4.51
862 1188 1.484240 CTGAGCAAAACCCAAACCCAA 59.516 47.619 0.00 0.00 0.00 4.12
863 1189 1.909302 TGAGCAAAACCCAAACCCAAA 59.091 42.857 0.00 0.00 0.00 3.28
864 1190 2.285083 GAGCAAAACCCAAACCCAAAC 58.715 47.619 0.00 0.00 0.00 2.93
869 1195 0.692756 AACCCAAACCCAAACCCAGG 60.693 55.000 0.00 0.00 0.00 4.45
931 1277 2.091541 CGCTTCCAACTCTCTCTCTCT 58.908 52.381 0.00 0.00 0.00 3.10
932 1278 2.097466 CGCTTCCAACTCTCTCTCTCTC 59.903 54.545 0.00 0.00 0.00 3.20
933 1279 3.356290 GCTTCCAACTCTCTCTCTCTCT 58.644 50.000 0.00 0.00 0.00 3.10
934 1280 3.378427 GCTTCCAACTCTCTCTCTCTCTC 59.622 52.174 0.00 0.00 0.00 3.20
935 1281 4.848357 CTTCCAACTCTCTCTCTCTCTCT 58.152 47.826 0.00 0.00 0.00 3.10
936 1282 4.487714 TCCAACTCTCTCTCTCTCTCTC 57.512 50.000 0.00 0.00 0.00 3.20
988 1334 4.927782 ACGCCACGCCAAAGCAGA 62.928 61.111 0.00 0.00 39.83 4.26
1009 1355 3.031417 GCCGCCCTCATGTACCAGT 62.031 63.158 0.00 0.00 0.00 4.00
1326 1684 2.747822 CGTCGTCGTCATCTCCGGT 61.748 63.158 0.00 0.00 0.00 5.28
1484 1846 2.330041 CGCCTGTTCGCCGTTTTT 59.670 55.556 0.00 0.00 0.00 1.94
1497 1860 4.207429 TCGCCGTTTTTATTGCTTGTTTTC 59.793 37.500 0.00 0.00 0.00 2.29
1607 1971 6.274579 CCGAGTTAGGAATTCTTAAGAGGTC 58.725 44.000 10.07 7.05 0.00 3.85
1659 2023 7.148340 GGACATATTTGAAGAGAGTGAACTTGG 60.148 40.741 0.00 0.00 0.00 3.61
1908 2272 5.101628 ACGTGTACTTCGTGTTACTTTCAA 58.898 37.500 13.77 0.00 40.07 2.69
1989 2353 2.852075 AAGGTGCGGACCCCAGAA 60.852 61.111 23.83 0.00 44.40 3.02
2080 2444 9.912634 CACTGTACATGAAAATTACCAAGAAAT 57.087 29.630 0.00 0.00 0.00 2.17
2124 2488 1.959989 GCCTGGGTTTGGATAGGTTGG 60.960 57.143 0.00 0.00 32.85 3.77
2234 2598 5.647658 CCATAATGGCTTAGTCAGTGTTCAA 59.352 40.000 0.00 0.00 0.00 2.69
2236 2600 7.148018 CCATAATGGCTTAGTCAGTGTTCAATT 60.148 37.037 0.00 0.00 0.00 2.32
2266 2630 6.665992 ATGACAGTTCACTAAAGGTGTAGA 57.334 37.500 0.00 0.00 45.50 2.59
2277 2641 8.304596 TCACTAAAGGTGTAGATCTGTGTTAAG 58.695 37.037 5.18 0.00 45.50 1.85
2354 2721 6.854496 TTGACAACTTATGTGTAGTTCCAC 57.146 37.500 0.00 0.00 44.12 4.02
2368 2735 9.508642 TGTGTAGTTCCACAATATTCACATTAA 57.491 29.630 0.00 0.00 42.13 1.40
2639 3014 7.650504 CACAAATCTCACAAGTTCATTGATGTT 59.349 33.333 0.00 0.00 41.83 2.71
2696 3077 4.298626 TGCTGTATTTGATACTCCCTCCT 58.701 43.478 0.43 0.00 36.70 3.69
2700 3081 4.658901 TGTATTTGATACTCCCTCCTTCCC 59.341 45.833 0.43 0.00 36.70 3.97
2720 3101 4.398044 TCCCAAAACAAGTGTCTCAACTTC 59.602 41.667 0.00 0.00 38.34 3.01
2760 3141 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
2761 3142 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
2762 3143 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
2763 3144 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2764 3145 8.868635 AGTTAGTACAAAGTTGAGACACTTAC 57.131 34.615 0.00 1.04 35.87 2.34
2765 3146 8.693625 AGTTAGTACAAAGTTGAGACACTTACT 58.306 33.333 0.00 2.97 35.87 2.24
2766 3147 9.310716 GTTAGTACAAAGTTGAGACACTTACTT 57.689 33.333 0.00 0.00 35.87 2.24
2767 3148 9.880157 TTAGTACAAAGTTGAGACACTTACTTT 57.120 29.630 0.00 0.00 40.42 2.66
2770 3151 5.821204 CAAAGTTGAGACACTTACTTTGGG 58.179 41.667 20.03 7.37 46.83 4.12
2771 3152 5.367945 AAGTTGAGACACTTACTTTGGGA 57.632 39.130 0.00 0.00 35.10 4.37
2772 3153 4.704965 AGTTGAGACACTTACTTTGGGAC 58.295 43.478 0.00 0.00 0.00 4.46
2773 3154 3.380479 TGAGACACTTACTTTGGGACG 57.620 47.619 0.00 0.00 0.00 4.79
2774 3155 2.036733 TGAGACACTTACTTTGGGACGG 59.963 50.000 0.00 0.00 0.00 4.79
2775 3156 1.346722 AGACACTTACTTTGGGACGGG 59.653 52.381 0.00 0.00 0.00 5.28
2776 3157 0.399075 ACACTTACTTTGGGACGGGG 59.601 55.000 0.00 0.00 0.00 5.73
2777 3158 0.322187 CACTTACTTTGGGACGGGGG 60.322 60.000 0.00 0.00 0.00 5.40
3119 3500 7.280205 GCTACATAACCAGTGCTATACTTTGTT 59.720 37.037 0.00 0.00 37.60 2.83
3198 3579 4.142902 GGTGATTGTACTACATGTGTGCAC 60.143 45.833 10.75 10.75 30.31 4.57
3199 3580 4.450757 GTGATTGTACTACATGTGTGCACA 59.549 41.667 17.42 17.42 46.44 4.57
3358 3739 1.649271 ATCTCCTGGTCCCCCAATGC 61.649 60.000 0.00 0.00 41.27 3.56
3799 4180 9.862371 CAGACATAACTTCATTACTAACAGAGT 57.138 33.333 0.00 0.00 42.69 3.24
4471 4855 3.498397 CGGACAAGCTTATCTGTGTTGTT 59.502 43.478 5.34 0.00 31.57 2.83
4489 4873 6.697019 GTGTTGTTGATGGCCAAATATATGAC 59.303 38.462 10.96 2.96 36.36 3.06
4678 5062 2.416893 GGTTGGAAGAGATTTCGTCAGC 59.583 50.000 1.83 0.00 34.03 4.26
5239 5723 2.899900 TCTCCGGGAATCATATCCACTG 59.100 50.000 0.00 0.00 41.55 3.66
5559 6043 2.539547 GCGTACTTGCAATGCACCTATG 60.540 50.000 7.72 6.80 38.71 2.23
5779 6271 2.096248 ACAAGAACGGCTAGAGAGGAG 58.904 52.381 0.00 0.00 0.00 3.69
5873 6365 3.259374 AGAGGTACCTCATTATCATGCGG 59.741 47.826 37.27 0.00 44.99 5.69
5887 6379 0.250467 ATGCGGACTTTGAGCAGTGT 60.250 50.000 0.00 0.00 44.55 3.55
6178 6671 4.662278 TCAGTAAAGGCTATGCAAACCTT 58.338 39.130 11.38 11.38 45.73 3.50
6188 6681 5.633601 GGCTATGCAAACCTTTACTTTCAAC 59.366 40.000 0.00 0.00 0.00 3.18
6252 6746 5.627499 TGCAAACATCTAATCTTGTGGTC 57.373 39.130 0.00 0.00 0.00 4.02
6295 6789 7.227512 CCTTCCTTAACTTATTATCTGCTGTGG 59.772 40.741 0.00 0.00 0.00 4.17
6299 6798 7.770897 CCTTAACTTATTATCTGCTGTGGAAGT 59.229 37.037 0.00 0.00 0.00 3.01
6317 6816 5.596361 TGGAAGTCATGAAAGTAGGCAAAAA 59.404 36.000 0.00 0.00 0.00 1.94
6318 6817 6.152379 GGAAGTCATGAAAGTAGGCAAAAAG 58.848 40.000 0.00 0.00 0.00 2.27
6319 6818 5.126396 AGTCATGAAAGTAGGCAAAAAGC 57.874 39.130 0.00 0.00 44.65 3.51
6320 6819 4.829492 AGTCATGAAAGTAGGCAAAAAGCT 59.171 37.500 0.00 0.00 44.79 3.74
6327 6826 3.412386 AGTAGGCAAAAAGCTCGTCAAT 58.588 40.909 0.00 0.00 44.79 2.57
6377 6876 5.469084 GTGGGATGAACGGGATTATAAGAAC 59.531 44.000 0.00 0.00 0.00 3.01
6383 6882 3.390819 ACGGGATTATAAGAACCCACCT 58.609 45.455 18.74 4.63 42.16 4.00
6504 7006 3.129638 TGTTTTGCTTCGCCTTGTTAACT 59.870 39.130 7.22 0.00 0.00 2.24
6545 7047 8.997621 TGTAATCTTAGTCTACCAACATGAAC 57.002 34.615 0.00 0.00 0.00 3.18
6709 7211 6.489603 TCCACCTTATATGTTGTCACCATTT 58.510 36.000 0.00 0.00 0.00 2.32
6729 7231 7.550906 ACCATTTACTTCATCTTTCTCTAGCAC 59.449 37.037 0.00 0.00 0.00 4.40
6890 7392 9.517609 CTGGTATGTAGTTATGTTCTAGTTGTC 57.482 37.037 0.00 0.00 0.00 3.18
6904 7406 4.919168 TCTAGTTGTCGTCAAATTGGTACG 59.081 41.667 0.02 1.44 35.20 3.67
6915 7417 6.474427 CGTCAAATTGGTACGTATGTGTAGAT 59.526 38.462 0.00 0.00 32.16 1.98
6996 7498 3.934068 TGGAATACTTCACGGTTCCTTC 58.066 45.455 4.81 0.00 40.55 3.46
6997 7499 3.325425 TGGAATACTTCACGGTTCCTTCA 59.675 43.478 4.81 0.00 40.55 3.02
7146 7652 6.791303 TGTTTCTCATGTTTACACTTGAACC 58.209 36.000 0.00 0.00 36.81 3.62
7220 7726 2.737252 AGTGAAGAGGCGAAAACGAATC 59.263 45.455 0.00 0.00 0.00 2.52
7253 7759 6.574832 CACGCGGATCAAAATATTACATCAAG 59.425 38.462 12.47 0.00 0.00 3.02
7302 7808 0.599728 GGCTGCCAACAATTTTGCGA 60.600 50.000 15.17 0.00 0.00 5.10
7313 7819 6.091034 CCAACAATTTTGCGATGAAATGATCA 59.909 34.615 0.00 0.00 43.67 2.92
7314 7820 7.360185 CCAACAATTTTGCGATGAAATGATCAA 60.360 33.333 0.00 0.00 42.54 2.57
7315 7821 7.655236 ACAATTTTGCGATGAAATGATCAAA 57.345 28.000 0.00 0.00 42.54 2.69
7316 7822 8.085720 ACAATTTTGCGATGAAATGATCAAAA 57.914 26.923 0.00 0.00 42.54 2.44
7317 7823 8.225107 ACAATTTTGCGATGAAATGATCAAAAG 58.775 29.630 0.00 0.00 42.54 2.27
7318 7824 6.709145 TTTTGCGATGAAATGATCAAAAGG 57.291 33.333 0.00 0.00 42.54 3.11
7322 7828 5.183713 TGCGATGAAATGATCAAAAGGAAGT 59.816 36.000 0.00 0.00 42.54 3.01
7455 7966 4.484537 AGCGTCTGTAGAGTAGGACTAA 57.515 45.455 0.00 0.00 0.00 2.24
7474 7985 9.554053 AGGACTAATATTTATCTGGCTGATAGT 57.446 33.333 12.91 8.37 38.70 2.12
7534 8048 4.648307 ACGGTATAAAGATCGGTCTCCTTT 59.352 41.667 0.00 0.00 32.15 3.11
7595 8117 2.398498 CAGTGAGTTCCTGTCTTGTCG 58.602 52.381 0.00 0.00 0.00 4.35
7597 8119 2.431057 AGTGAGTTCCTGTCTTGTCGTT 59.569 45.455 0.00 0.00 0.00 3.85
7598 8120 2.540101 GTGAGTTCCTGTCTTGTCGTTG 59.460 50.000 0.00 0.00 0.00 4.10
7599 8121 2.135933 GAGTTCCTGTCTTGTCGTTGG 58.864 52.381 0.00 0.00 0.00 3.77
7600 8122 1.202651 AGTTCCTGTCTTGTCGTTGGG 60.203 52.381 0.00 0.00 0.00 4.12
7601 8123 0.834612 TTCCTGTCTTGTCGTTGGGT 59.165 50.000 0.00 0.00 0.00 4.51
7602 8124 0.105964 TCCTGTCTTGTCGTTGGGTG 59.894 55.000 0.00 0.00 0.00 4.61
7603 8125 0.884704 CCTGTCTTGTCGTTGGGTGG 60.885 60.000 0.00 0.00 0.00 4.61
7604 8126 0.105964 CTGTCTTGTCGTTGGGTGGA 59.894 55.000 0.00 0.00 0.00 4.02
7605 8127 0.762418 TGTCTTGTCGTTGGGTGGAT 59.238 50.000 0.00 0.00 0.00 3.41
7606 8128 1.156736 GTCTTGTCGTTGGGTGGATG 58.843 55.000 0.00 0.00 0.00 3.51
7607 8129 0.605319 TCTTGTCGTTGGGTGGATGC 60.605 55.000 0.00 0.00 0.00 3.91
7608 8130 0.888736 CTTGTCGTTGGGTGGATGCA 60.889 55.000 0.00 0.00 0.00 3.96
7609 8131 1.169661 TTGTCGTTGGGTGGATGCAC 61.170 55.000 9.16 9.16 0.00 4.57
7610 8132 1.302511 GTCGTTGGGTGGATGCACT 60.303 57.895 17.44 0.00 0.00 4.40
7611 8133 1.302431 TCGTTGGGTGGATGCACTG 60.302 57.895 17.44 2.97 0.00 3.66
7612 8134 1.302431 CGTTGGGTGGATGCACTGA 60.302 57.895 17.44 0.99 0.00 3.41
7618 8140 0.607489 GGTGGATGCACTGAACAGCT 60.607 55.000 17.44 0.00 0.00 4.24
7627 8149 1.347707 CACTGAACAGCTCCCCTTGTA 59.652 52.381 1.46 0.00 0.00 2.41
7644 8166 6.095440 CCCCTTGTAGTGTTCTGAATTTATGG 59.905 42.308 0.00 0.00 0.00 2.74
7668 8397 3.571590 AGCAACAAACATAGGGGAACAA 58.428 40.909 0.00 0.00 0.00 2.83
7706 8443 1.634702 TGCACAAGTTTTTGAACCGC 58.365 45.000 0.00 0.00 37.73 5.68
7731 8468 8.232513 GCCTTCCATTTTTCAGAATTTTTGATC 58.767 33.333 0.00 0.00 0.00 2.92
7748 8485 6.677781 TTTGATCGAGTTTTCTGACACTTT 57.322 33.333 0.00 0.00 0.00 2.66
7755 8492 6.255020 TCGAGTTTTCTGACACTTTCAAGTAC 59.745 38.462 0.00 0.00 37.08 2.73
7757 8494 7.412563 CGAGTTTTCTGACACTTTCAAGTACAA 60.413 37.037 0.00 0.00 37.08 2.41
7758 8495 8.106247 AGTTTTCTGACACTTTCAAGTACAAA 57.894 30.769 0.00 0.00 37.08 2.83
7759 8496 8.739972 AGTTTTCTGACACTTTCAAGTACAAAT 58.260 29.630 0.00 0.00 37.08 2.32
7760 8497 9.353999 GTTTTCTGACACTTTCAAGTACAAATT 57.646 29.630 0.00 0.00 37.08 1.82
7761 8498 9.567848 TTTTCTGACACTTTCAAGTACAAATTC 57.432 29.630 0.00 0.00 37.08 2.17
7762 8499 8.506168 TTCTGACACTTTCAAGTACAAATTCT 57.494 30.769 0.00 0.00 37.08 2.40
7763 8500 7.919690 TCTGACACTTTCAAGTACAAATTCTG 58.080 34.615 0.00 0.00 37.08 3.02
7764 8501 7.768582 TCTGACACTTTCAAGTACAAATTCTGA 59.231 33.333 0.00 0.00 37.08 3.27
7765 8502 8.275015 TGACACTTTCAAGTACAAATTCTGAA 57.725 30.769 0.00 0.00 37.08 3.02
7766 8503 8.902806 TGACACTTTCAAGTACAAATTCTGAAT 58.097 29.630 0.00 0.00 37.08 2.57
7767 8504 9.387123 GACACTTTCAAGTACAAATTCTGAATC 57.613 33.333 2.92 0.00 37.08 2.52
7768 8505 8.902806 ACACTTTCAAGTACAAATTCTGAATCA 58.097 29.630 2.92 0.00 37.08 2.57
7769 8506 9.390795 CACTTTCAAGTACAAATTCTGAATCAG 57.609 33.333 3.38 3.38 37.08 2.90
7770 8507 9.125026 ACTTTCAAGTACAAATTCTGAATCAGT 57.875 29.630 10.36 7.92 37.52 3.41
7771 8508 9.956720 CTTTCAAGTACAAATTCTGAATCAGTT 57.043 29.630 10.36 0.00 32.61 3.16
7774 8511 9.734620 TCAAGTACAAATTCTGAATCAGTTTTG 57.265 29.630 25.02 25.02 39.27 2.44
7775 8512 8.482429 CAAGTACAAATTCTGAATCAGTTTTGC 58.518 33.333 25.82 17.34 38.20 3.68
7776 8513 7.945134 AGTACAAATTCTGAATCAGTTTTGCT 58.055 30.769 25.82 18.53 38.20 3.91
7777 8514 9.066892 AGTACAAATTCTGAATCAGTTTTGCTA 57.933 29.630 25.82 18.85 38.20 3.49
7778 8515 9.677567 GTACAAATTCTGAATCAGTTTTGCTAA 57.322 29.630 25.82 16.41 38.20 3.09
7779 8516 8.807667 ACAAATTCTGAATCAGTTTTGCTAAG 57.192 30.769 25.82 13.06 38.20 2.18
7780 8517 8.416329 ACAAATTCTGAATCAGTTTTGCTAAGT 58.584 29.630 25.82 13.51 38.20 2.24
7781 8518 8.909671 CAAATTCTGAATCAGTTTTGCTAAGTC 58.090 33.333 19.77 0.00 33.24 3.01
7782 8519 7.992754 ATTCTGAATCAGTTTTGCTAAGTCT 57.007 32.000 10.36 0.00 32.61 3.24
7783 8520 7.426929 TTCTGAATCAGTTTTGCTAAGTCTC 57.573 36.000 10.36 0.00 32.61 3.36
7784 8521 6.524734 TCTGAATCAGTTTTGCTAAGTCTCA 58.475 36.000 10.36 0.00 32.61 3.27
7785 8522 6.648310 TCTGAATCAGTTTTGCTAAGTCTCAG 59.352 38.462 10.36 0.00 32.61 3.35
7786 8523 6.291377 TGAATCAGTTTTGCTAAGTCTCAGT 58.709 36.000 0.00 0.00 0.00 3.41
7787 8524 6.767902 TGAATCAGTTTTGCTAAGTCTCAGTT 59.232 34.615 0.00 0.00 0.00 3.16
7788 8525 5.991328 TCAGTTTTGCTAAGTCTCAGTTG 57.009 39.130 0.00 0.00 0.00 3.16
7789 8526 5.670485 TCAGTTTTGCTAAGTCTCAGTTGA 58.330 37.500 0.00 0.00 0.00 3.18
7790 8527 6.291377 TCAGTTTTGCTAAGTCTCAGTTGAT 58.709 36.000 0.00 0.00 0.00 2.57
7791 8528 6.203530 TCAGTTTTGCTAAGTCTCAGTTGATG 59.796 38.462 0.00 0.00 0.00 3.07
7792 8529 5.049129 AGTTTTGCTAAGTCTCAGTTGATGC 60.049 40.000 0.00 0.00 0.00 3.91
7793 8530 3.969287 TGCTAAGTCTCAGTTGATGCT 57.031 42.857 0.00 0.00 0.00 3.79
7794 8531 5.405935 TTGCTAAGTCTCAGTTGATGCTA 57.594 39.130 0.00 0.00 0.00 3.49
7795 8532 5.405935 TGCTAAGTCTCAGTTGATGCTAA 57.594 39.130 0.00 0.00 0.00 3.09
7796 8533 5.171476 TGCTAAGTCTCAGTTGATGCTAAC 58.829 41.667 0.00 0.00 0.00 2.34
7797 8534 5.047021 TGCTAAGTCTCAGTTGATGCTAACT 60.047 40.000 0.00 0.00 41.37 2.24
7798 8535 5.872070 GCTAAGTCTCAGTTGATGCTAACTT 59.128 40.000 0.00 0.00 38.78 2.66
7799 8536 6.370166 GCTAAGTCTCAGTTGATGCTAACTTT 59.630 38.462 0.00 0.00 38.78 2.66
7800 8537 6.551385 AAGTCTCAGTTGATGCTAACTTTG 57.449 37.500 0.00 0.00 38.78 2.77
7801 8538 5.858381 AGTCTCAGTTGATGCTAACTTTGA 58.142 37.500 0.00 0.00 38.78 2.69
7802 8539 6.471146 AGTCTCAGTTGATGCTAACTTTGAT 58.529 36.000 0.00 0.00 38.78 2.57
7803 8540 6.593382 AGTCTCAGTTGATGCTAACTTTGATC 59.407 38.462 0.00 0.00 38.78 2.92
7804 8541 6.593382 GTCTCAGTTGATGCTAACTTTGATCT 59.407 38.462 0.00 0.00 38.78 2.75
7805 8542 7.118971 GTCTCAGTTGATGCTAACTTTGATCTT 59.881 37.037 0.00 0.00 38.78 2.40
7806 8543 7.118825 TCTCAGTTGATGCTAACTTTGATCTTG 59.881 37.037 0.00 0.00 38.78 3.02
7807 8544 5.798934 CAGTTGATGCTAACTTTGATCTTGC 59.201 40.000 0.00 0.00 38.78 4.01
7808 8545 5.474532 AGTTGATGCTAACTTTGATCTTGCA 59.525 36.000 0.00 0.00 37.62 4.08
7809 8546 6.152323 AGTTGATGCTAACTTTGATCTTGCAT 59.848 34.615 0.00 0.00 37.62 3.96
7810 8547 5.886992 TGATGCTAACTTTGATCTTGCATG 58.113 37.500 5.75 0.00 39.36 4.06
7811 8548 5.648960 TGATGCTAACTTTGATCTTGCATGA 59.351 36.000 4.57 4.57 39.36 3.07
7812 8549 5.963176 TGCTAACTTTGATCTTGCATGAA 57.037 34.783 6.36 0.00 0.00 2.57
7813 8550 5.946298 TGCTAACTTTGATCTTGCATGAAG 58.054 37.500 6.36 2.22 0.00 3.02
7814 8551 5.706833 TGCTAACTTTGATCTTGCATGAAGA 59.293 36.000 6.36 3.41 45.03 2.87
7883 8620 8.803397 ATACTATATATCACTTGACGTAGCCA 57.197 34.615 0.00 0.00 0.00 4.75
7884 8621 6.910995 ACTATATATCACTTGACGTAGCCAC 58.089 40.000 0.00 0.00 0.00 5.01
7885 8622 5.784578 ATATATCACTTGACGTAGCCACA 57.215 39.130 0.00 0.00 0.00 4.17
7886 8623 2.080286 ATCACTTGACGTAGCCACAC 57.920 50.000 0.00 0.00 0.00 3.82
7887 8624 0.032952 TCACTTGACGTAGCCACACC 59.967 55.000 0.00 0.00 0.00 4.16
7888 8625 0.949105 CACTTGACGTAGCCACACCC 60.949 60.000 0.00 0.00 0.00 4.61
7889 8626 1.369692 CTTGACGTAGCCACACCCA 59.630 57.895 0.00 0.00 0.00 4.51
7890 8627 0.670546 CTTGACGTAGCCACACCCAG 60.671 60.000 0.00 0.00 0.00 4.45
7891 8628 1.116536 TTGACGTAGCCACACCCAGA 61.117 55.000 0.00 0.00 0.00 3.86
7892 8629 0.902984 TGACGTAGCCACACCCAGAT 60.903 55.000 0.00 0.00 0.00 2.90
7899 8636 4.038763 CGTAGCCACACCCAGATAGAATAA 59.961 45.833 0.00 0.00 0.00 1.40
7903 8640 4.576463 GCCACACCCAGATAGAATAAAGTG 59.424 45.833 0.00 0.00 0.00 3.16
7936 8746 7.430441 GTGTTTTATATTGTTCCACCTGTGTT 58.570 34.615 0.00 0.00 0.00 3.32
7977 8787 9.136952 AGTAGAAACAACGAGAATACAACATAC 57.863 33.333 0.00 0.00 0.00 2.39
8021 8831 4.836125 TGAAGAACCAGACAAAGAATGC 57.164 40.909 0.00 0.00 0.00 3.56
8084 8988 9.774413 ACTAACTAAAAAGTAGCAGTGTATGTT 57.226 29.630 0.00 0.00 0.00 2.71
8094 8998 3.146066 GCAGTGTATGTTTGTCTCCCAA 58.854 45.455 0.00 0.00 0.00 4.12
8118 9022 5.521906 AGCAGTATATGGATATGCTACCG 57.478 43.478 0.00 0.00 44.97 4.02
8119 9023 4.342378 AGCAGTATATGGATATGCTACCGG 59.658 45.833 0.00 0.00 44.97 5.28
8164 9068 2.024305 GCTATGCTGCTGCTTGCG 59.976 61.111 17.00 7.50 46.63 4.85
8166 9070 2.437180 TATGCTGCTGCTTGCGCT 60.437 55.556 17.00 0.50 46.63 5.92
8181 9086 1.416050 GCGCTAAGCTGCAAATTGCC 61.416 55.000 15.98 0.47 44.04 4.52
8195 9100 1.259840 ATTGCCCCATCTGTTGCCAC 61.260 55.000 0.00 0.00 0.00 5.01
8219 9124 1.538950 GGGCAGAAGAAAGCTCACTTG 59.461 52.381 9.55 0.26 35.85 3.16
8257 9162 4.215399 TCAATACGCTTGTTTTCCTCCAAG 59.785 41.667 0.00 0.00 40.77 3.61
8262 9167 2.884639 GCTTGTTTTCCTCCAAGTGCTA 59.115 45.455 0.00 0.00 40.13 3.49
8300 9209 3.986277 TCTTTGGAAACGTCTACCTGTC 58.014 45.455 0.00 0.00 0.00 3.51
8305 9214 3.005472 TGGAAACGTCTACCTGTCAAGAG 59.995 47.826 0.00 0.00 0.00 2.85
8309 9218 1.891450 CGTCTACCTGTCAAGAGGGGT 60.891 57.143 0.00 0.00 37.45 4.95
8310 9219 2.619849 CGTCTACCTGTCAAGAGGGGTA 60.620 54.545 0.00 0.00 37.45 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.997734 ACAGAGGGAGTATCATAGAAAATCTTT 58.002 33.333 0.00 0.00 36.25 2.52
2 3 8.560124 ACAGAGGGAGTATCATAGAAAATCTT 57.440 34.615 0.00 0.00 36.25 2.40
3 4 8.560124 AACAGAGGGAGTATCATAGAAAATCT 57.440 34.615 0.00 0.00 36.25 2.40
4 5 8.424918 TGAACAGAGGGAGTATCATAGAAAATC 58.575 37.037 0.00 0.00 36.25 2.17
5 6 8.324191 TGAACAGAGGGAGTATCATAGAAAAT 57.676 34.615 0.00 0.00 36.25 1.82
6 7 7.400339 ACTGAACAGAGGGAGTATCATAGAAAA 59.600 37.037 8.87 0.00 36.25 2.29
7 8 6.897966 ACTGAACAGAGGGAGTATCATAGAAA 59.102 38.462 8.87 0.00 36.25 2.52
8 9 6.436027 ACTGAACAGAGGGAGTATCATAGAA 58.564 40.000 8.87 0.00 36.25 2.10
9 10 6.019656 ACTGAACAGAGGGAGTATCATAGA 57.980 41.667 8.87 0.00 36.25 1.98
10 11 6.723298 AACTGAACAGAGGGAGTATCATAG 57.277 41.667 8.87 0.00 36.25 2.23
11 12 7.496346 AAAACTGAACAGAGGGAGTATCATA 57.504 36.000 8.87 0.00 36.25 2.15
12 13 6.380079 AAAACTGAACAGAGGGAGTATCAT 57.620 37.500 8.87 0.00 36.25 2.45
13 14 5.825593 AAAACTGAACAGAGGGAGTATCA 57.174 39.130 8.87 0.00 36.25 2.15
14 15 9.535878 CTTATAAAACTGAACAGAGGGAGTATC 57.464 37.037 8.87 0.00 0.00 2.24
15 16 9.047947 ACTTATAAAACTGAACAGAGGGAGTAT 57.952 33.333 8.87 1.34 0.00 2.12
16 17 8.431910 ACTTATAAAACTGAACAGAGGGAGTA 57.568 34.615 8.87 0.00 0.00 2.59
17 18 7.016268 TGACTTATAAAACTGAACAGAGGGAGT 59.984 37.037 8.87 3.57 0.00 3.85
18 19 7.386851 TGACTTATAAAACTGAACAGAGGGAG 58.613 38.462 8.87 0.86 0.00 4.30
19 20 7.311092 TGACTTATAAAACTGAACAGAGGGA 57.689 36.000 8.87 0.00 0.00 4.20
20 21 8.567285 AATGACTTATAAAACTGAACAGAGGG 57.433 34.615 8.87 0.00 0.00 4.30
21 22 8.669243 GGAATGACTTATAAAACTGAACAGAGG 58.331 37.037 8.87 0.00 0.00 3.69
22 23 9.219603 TGGAATGACTTATAAAACTGAACAGAG 57.780 33.333 8.87 0.00 0.00 3.35
23 24 9.219603 CTGGAATGACTTATAAAACTGAACAGA 57.780 33.333 8.87 0.00 0.00 3.41
24 25 9.219603 TCTGGAATGACTTATAAAACTGAACAG 57.780 33.333 0.00 0.00 0.00 3.16
25 26 8.999431 GTCTGGAATGACTTATAAAACTGAACA 58.001 33.333 0.00 0.00 34.39 3.18
26 27 8.999431 TGTCTGGAATGACTTATAAAACTGAAC 58.001 33.333 0.00 0.00 37.79 3.18
27 28 9.567776 TTGTCTGGAATGACTTATAAAACTGAA 57.432 29.630 0.00 0.00 37.79 3.02
28 29 9.219603 CTTGTCTGGAATGACTTATAAAACTGA 57.780 33.333 0.00 0.00 37.79 3.41
29 30 9.003658 ACTTGTCTGGAATGACTTATAAAACTG 57.996 33.333 0.00 0.00 37.79 3.16
30 31 9.003658 CACTTGTCTGGAATGACTTATAAAACT 57.996 33.333 0.00 0.00 37.79 2.66
31 32 8.999431 TCACTTGTCTGGAATGACTTATAAAAC 58.001 33.333 0.00 0.00 37.79 2.43
32 33 9.567776 TTCACTTGTCTGGAATGACTTATAAAA 57.432 29.630 0.00 0.00 37.79 1.52
33 34 9.567776 TTTCACTTGTCTGGAATGACTTATAAA 57.432 29.630 0.00 0.00 37.79 1.40
34 35 9.739276 ATTTCACTTGTCTGGAATGACTTATAA 57.261 29.630 0.00 0.00 37.79 0.98
35 36 9.739276 AATTTCACTTGTCTGGAATGACTTATA 57.261 29.630 0.00 0.00 37.79 0.98
36 37 8.517878 CAATTTCACTTGTCTGGAATGACTTAT 58.482 33.333 0.00 0.00 37.79 1.73
37 38 7.719193 TCAATTTCACTTGTCTGGAATGACTTA 59.281 33.333 0.00 0.00 37.79 2.24
38 39 6.547141 TCAATTTCACTTGTCTGGAATGACTT 59.453 34.615 0.00 0.00 37.79 3.01
39 40 6.064060 TCAATTTCACTTGTCTGGAATGACT 58.936 36.000 0.00 0.00 37.79 3.41
40 41 6.317789 TCAATTTCACTTGTCTGGAATGAC 57.682 37.500 0.00 0.00 37.47 3.06
41 42 5.048504 GCTCAATTTCACTTGTCTGGAATGA 60.049 40.000 0.00 0.00 0.00 2.57
42 43 5.048224 AGCTCAATTTCACTTGTCTGGAATG 60.048 40.000 0.00 0.00 0.00 2.67
43 44 5.048224 CAGCTCAATTTCACTTGTCTGGAAT 60.048 40.000 0.00 0.00 31.08 3.01
44 45 4.276678 CAGCTCAATTTCACTTGTCTGGAA 59.723 41.667 0.00 0.00 31.08 3.53
45 46 3.817084 CAGCTCAATTTCACTTGTCTGGA 59.183 43.478 0.00 0.00 31.08 3.86
46 47 3.567164 ACAGCTCAATTTCACTTGTCTGG 59.433 43.478 0.00 0.00 34.87 3.86
47 48 4.825546 ACAGCTCAATTTCACTTGTCTG 57.174 40.909 0.00 0.00 35.73 3.51
48 49 5.841957 AAACAGCTCAATTTCACTTGTCT 57.158 34.783 0.00 0.00 0.00 3.41
49 50 6.972328 TGTAAAACAGCTCAATTTCACTTGTC 59.028 34.615 0.00 0.00 0.00 3.18
50 51 6.751888 GTGTAAAACAGCTCAATTTCACTTGT 59.248 34.615 0.00 0.00 0.00 3.16
51 52 6.751425 TGTGTAAAACAGCTCAATTTCACTTG 59.249 34.615 10.76 0.00 33.78 3.16
52 53 6.862209 TGTGTAAAACAGCTCAATTTCACTT 58.138 32.000 10.76 0.00 33.78 3.16
53 54 6.449635 TGTGTAAAACAGCTCAATTTCACT 57.550 33.333 10.76 0.00 33.78 3.41
72 73 8.076178 GCTTTGTAAATATTTCAGACACTGTGT 58.924 33.333 14.23 14.23 32.61 3.72
73 74 7.538678 GGCTTTGTAAATATTTCAGACACTGTG 59.461 37.037 3.39 6.19 32.61 3.66
74 75 7.448469 AGGCTTTGTAAATATTTCAGACACTGT 59.552 33.333 3.39 0.00 32.61 3.55
75 76 7.820648 AGGCTTTGTAAATATTTCAGACACTG 58.179 34.615 3.39 1.36 0.00 3.66
76 77 8.409358 AAGGCTTTGTAAATATTTCAGACACT 57.591 30.769 3.39 0.00 0.00 3.55
92 93 8.306761 CCTCTGTTCATTTTTATAAGGCTTTGT 58.693 33.333 4.45 0.00 0.00 2.83
93 94 7.761249 CCCTCTGTTCATTTTTATAAGGCTTTG 59.239 37.037 4.45 0.00 0.00 2.77
94 95 7.673926 TCCCTCTGTTCATTTTTATAAGGCTTT 59.326 33.333 4.45 0.00 0.00 3.51
95 96 7.182060 TCCCTCTGTTCATTTTTATAAGGCTT 58.818 34.615 4.58 4.58 0.00 4.35
96 97 6.731467 TCCCTCTGTTCATTTTTATAAGGCT 58.269 36.000 0.00 0.00 0.00 4.58
97 98 6.603599 ACTCCCTCTGTTCATTTTTATAAGGC 59.396 38.462 0.00 0.00 0.00 4.35
98 99 9.853177 ATACTCCCTCTGTTCATTTTTATAAGG 57.147 33.333 0.00 0.00 0.00 2.69
107 108 9.533831 ACAAAAATTATACTCCCTCTGTTCATT 57.466 29.630 0.00 0.00 0.00 2.57
108 109 8.960591 CACAAAAATTATACTCCCTCTGTTCAT 58.039 33.333 0.00 0.00 0.00 2.57
109 110 8.160765 TCACAAAAATTATACTCCCTCTGTTCA 58.839 33.333 0.00 0.00 0.00 3.18
110 111 8.451748 GTCACAAAAATTATACTCCCTCTGTTC 58.548 37.037 0.00 0.00 0.00 3.18
111 112 7.942341 TGTCACAAAAATTATACTCCCTCTGTT 59.058 33.333 0.00 0.00 0.00 3.16
112 113 7.458397 TGTCACAAAAATTATACTCCCTCTGT 58.542 34.615 0.00 0.00 0.00 3.41
113 114 7.921786 TGTCACAAAAATTATACTCCCTCTG 57.078 36.000 0.00 0.00 0.00 3.35
114 115 9.533831 AAATGTCACAAAAATTATACTCCCTCT 57.466 29.630 0.00 0.00 0.00 3.69
185 189 1.544759 CCGCCCGAATTTATTAGGCCT 60.545 52.381 11.78 11.78 36.46 5.19
189 193 2.423577 CCCTCCGCCCGAATTTATTAG 58.576 52.381 0.00 0.00 0.00 1.73
211 215 1.741770 CGGAGCCACAAGCCAGTAC 60.742 63.158 0.00 0.00 45.47 2.73
216 220 1.460273 TTTTTCCGGAGCCACAAGCC 61.460 55.000 3.34 0.00 45.47 4.35
248 252 1.613925 GACGCATCAGCTGTAGGGATA 59.386 52.381 23.84 2.29 39.10 2.59
250 254 1.676678 GGACGCATCAGCTGTAGGGA 61.677 60.000 23.84 3.65 39.10 4.20
278 601 0.318784 GTATGATCCGACCCTCGTGC 60.319 60.000 0.00 0.00 38.40 5.34
298 621 7.201911 CCATGTGACCCTCTTTTAGAAGTTTTT 60.202 37.037 0.00 0.00 34.41 1.94
311 634 2.642171 TTAGGACCATGTGACCCTCT 57.358 50.000 0.00 0.00 0.00 3.69
363 687 2.345641 CGTTCGGTCATTGTAGCTGAAG 59.654 50.000 0.00 0.00 0.00 3.02
432 756 4.555348 AAAAATCAACTTTCGTGGCGTA 57.445 36.364 0.00 0.00 0.00 4.42
506 831 4.970003 CACCGTGACAAATTGACTTCTTTC 59.030 41.667 0.00 0.00 0.00 2.62
557 882 6.087291 CCACGAATACGATTATACGAGTTTCC 59.913 42.308 0.00 0.00 42.66 3.13
606 931 1.379642 GGGCCAATCCGAAGAAGCAG 61.380 60.000 4.39 0.00 34.94 4.24
806 1131 2.352651 TGGGATATACGTATACGCGAGC 59.647 50.000 24.64 12.50 44.43 5.03
808 1133 3.599343 AGTGGGATATACGTATACGCGA 58.401 45.455 24.64 13.63 44.43 5.87
810 1135 3.065925 GGGAGTGGGATATACGTATACGC 59.934 52.174 24.64 17.34 44.43 4.42
811 1136 3.629398 GGGGAGTGGGATATACGTATACG 59.371 52.174 23.24 23.24 46.33 3.06
812 1137 3.956848 GGGGGAGTGGGATATACGTATAC 59.043 52.174 17.27 7.33 0.00 1.47
813 1138 3.597411 TGGGGGAGTGGGATATACGTATA 59.403 47.826 17.24 17.24 0.00 1.47
814 1139 2.384375 TGGGGGAGTGGGATATACGTAT 59.616 50.000 13.54 13.54 0.00 3.06
815 1140 1.788295 TGGGGGAGTGGGATATACGTA 59.212 52.381 0.00 0.00 0.00 3.57
816 1141 0.564171 TGGGGGAGTGGGATATACGT 59.436 55.000 0.00 0.00 0.00 3.57
817 1142 0.974383 GTGGGGGAGTGGGATATACG 59.026 60.000 0.00 0.00 0.00 3.06
818 1143 2.417719 AGTGGGGGAGTGGGATATAC 57.582 55.000 0.00 0.00 0.00 1.47
859 1185 2.515979 GGTTTGGGCCTGGGTTTGG 61.516 63.158 4.53 0.00 0.00 3.28
860 1186 2.515979 GGGTTTGGGCCTGGGTTTG 61.516 63.158 4.53 0.00 0.00 2.93
861 1187 2.122592 GGGTTTGGGCCTGGGTTT 60.123 61.111 4.53 0.00 0.00 3.27
862 1188 4.248649 GGGGTTTGGGCCTGGGTT 62.249 66.667 4.53 0.00 0.00 4.11
931 1277 2.355132 GGCGAGACGAAATGTAGAGAGA 59.645 50.000 0.00 0.00 0.00 3.10
932 1278 2.722071 GGCGAGACGAAATGTAGAGAG 58.278 52.381 0.00 0.00 0.00 3.20
933 1279 1.063616 CGGCGAGACGAAATGTAGAGA 59.936 52.381 0.00 0.00 35.47 3.10
934 1280 1.467875 CGGCGAGACGAAATGTAGAG 58.532 55.000 0.00 0.00 35.47 2.43
935 1281 0.524816 GCGGCGAGACGAAATGTAGA 60.525 55.000 12.98 0.00 35.47 2.59
936 1282 1.798368 CGCGGCGAGACGAAATGTAG 61.798 60.000 19.16 0.00 35.47 2.74
988 1334 4.157120 GTACATGAGGGCGGCGGT 62.157 66.667 9.78 0.00 0.00 5.68
996 1342 1.823295 CGGGGACTGGTACATGAGG 59.177 63.158 0.00 0.00 38.20 3.86
1009 1355 3.849951 GGCGAGATTCAGCGGGGA 61.850 66.667 0.00 0.00 0.00 4.81
1188 1546 0.843984 CCCCATCACCGAATAACCCT 59.156 55.000 0.00 0.00 0.00 4.34
1484 1846 3.804873 GGCAAAACCGAAAACAAGCAATA 59.195 39.130 0.00 0.00 0.00 1.90
1497 1860 1.660264 GGCGTTTGAGGCAAAACCG 60.660 57.895 9.40 0.00 46.52 4.44
1607 1971 0.319555 ATTATGCGATCCACGGTCCG 60.320 55.000 10.48 10.48 42.83 4.79
1677 2041 6.493449 TCGAACAATGACATAGCAAAATCA 57.507 33.333 0.00 0.00 0.00 2.57
1863 2227 3.501950 GCAGGTGCAGCTGTTAATTTAC 58.498 45.455 37.97 20.44 41.59 2.01
1877 2241 1.860078 GAAGTACACGTGCAGGTGC 59.140 57.895 33.17 20.74 41.65 5.01
1878 2242 0.596600 ACGAAGTACACGTGCAGGTG 60.597 55.000 32.01 32.01 41.94 4.00
1879 2243 1.737816 ACGAAGTACACGTGCAGGT 59.262 52.632 17.22 6.15 41.94 4.00
1880 2244 4.647654 ACGAAGTACACGTGCAGG 57.352 55.556 17.22 4.53 41.94 4.85
1908 2272 4.019792 TGACAATGACTGTTAGGCACAT 57.980 40.909 0.00 0.00 35.04 3.21
2080 2444 1.407712 GCTACCCGGGTGCAAGATTTA 60.408 52.381 36.97 11.92 0.00 1.40
2124 2488 2.290323 TGTTTTAGAAGGAGGAGCAGGC 60.290 50.000 0.00 0.00 0.00 4.85
2234 2598 6.882610 TTAGTGAACTGTCATTTCAGCAAT 57.117 33.333 5.90 0.00 38.84 3.56
2236 2600 5.239306 CCTTTAGTGAACTGTCATTTCAGCA 59.761 40.000 5.90 0.00 38.84 4.41
2266 2630 7.376615 ACTACGCTCTTTAACTTAACACAGAT 58.623 34.615 0.00 0.00 0.00 2.90
2277 2641 7.958112 TTTCAACAAAACTACGCTCTTTAAC 57.042 32.000 0.00 0.00 0.00 2.01
2354 2721 8.785468 TGCATGTCGAATTAATGTGAATATTG 57.215 30.769 0.00 0.00 0.00 1.90
2368 2735 4.115516 GCGATATATCCTGCATGTCGAAT 58.884 43.478 7.15 0.00 38.75 3.34
2372 2739 4.753233 AGAAGCGATATATCCTGCATGTC 58.247 43.478 13.12 8.28 0.00 3.06
2528 2895 5.120399 AGTGTGGACGTTCATAGAAAAACA 58.880 37.500 0.00 0.00 0.00 2.83
2561 2936 2.018515 CCAACGGTAACCAAACACAGT 58.981 47.619 0.00 0.00 0.00 3.55
2566 2941 3.779271 TTGTTCCAACGGTAACCAAAC 57.221 42.857 0.00 0.00 0.00 2.93
2567 2942 4.021719 TGTTTTGTTCCAACGGTAACCAAA 60.022 37.500 0.00 0.00 0.00 3.28
2594 2969 5.715439 TGTGGGATGTGAAGAATAATCCT 57.285 39.130 0.00 0.00 38.91 3.24
2600 2975 5.416952 GTGAGATTTGTGGGATGTGAAGAAT 59.583 40.000 0.00 0.00 0.00 2.40
2677 3058 4.658901 GGGAAGGAGGGAGTATCAAATACA 59.341 45.833 0.39 0.00 38.21 2.29
2696 3077 4.340617 AGTTGAGACACTTGTTTTGGGAA 58.659 39.130 0.00 0.00 0.00 3.97
2700 3081 5.942872 ACTGAAGTTGAGACACTTGTTTTG 58.057 37.500 0.00 0.00 37.11 2.44
2739 3120 8.693625 AGTAAGTGTCTCAACTTTGTACTAACT 58.306 33.333 0.00 0.00 40.77 2.24
2740 3121 8.868635 AGTAAGTGTCTCAACTTTGTACTAAC 57.131 34.615 0.00 0.00 40.77 2.34
2742 3123 9.309516 CAAAGTAAGTGTCTCAACTTTGTACTA 57.690 33.333 15.26 0.00 46.99 1.82
2749 3130 5.123936 GTCCCAAAGTAAGTGTCTCAACTT 58.876 41.667 0.00 0.00 42.89 2.66
2750 3131 4.704965 GTCCCAAAGTAAGTGTCTCAACT 58.295 43.478 0.00 0.00 0.00 3.16
2751 3132 3.493503 CGTCCCAAAGTAAGTGTCTCAAC 59.506 47.826 0.00 0.00 0.00 3.18
2752 3133 3.493699 CCGTCCCAAAGTAAGTGTCTCAA 60.494 47.826 0.00 0.00 0.00 3.02
2753 3134 2.036733 CCGTCCCAAAGTAAGTGTCTCA 59.963 50.000 0.00 0.00 0.00 3.27
2754 3135 2.612221 CCCGTCCCAAAGTAAGTGTCTC 60.612 54.545 0.00 0.00 0.00 3.36
2755 3136 1.346722 CCCGTCCCAAAGTAAGTGTCT 59.653 52.381 0.00 0.00 0.00 3.41
2756 3137 1.609841 CCCCGTCCCAAAGTAAGTGTC 60.610 57.143 0.00 0.00 0.00 3.67
2757 3138 0.399075 CCCCGTCCCAAAGTAAGTGT 59.601 55.000 0.00 0.00 0.00 3.55
2758 3139 0.322187 CCCCCGTCCCAAAGTAAGTG 60.322 60.000 0.00 0.00 0.00 3.16
2759 3140 2.072366 CCCCCGTCCCAAAGTAAGT 58.928 57.895 0.00 0.00 0.00 2.24
2774 3155 0.261696 ATGCCACCAAATACTCCCCC 59.738 55.000 0.00 0.00 0.00 5.40
2775 3156 3.525800 ATATGCCACCAAATACTCCCC 57.474 47.619 0.00 0.00 0.00 4.81
2776 3157 5.010282 CCTTATATGCCACCAAATACTCCC 58.990 45.833 0.00 0.00 0.00 4.30
2777 3158 5.876357 TCCTTATATGCCACCAAATACTCC 58.124 41.667 0.00 0.00 0.00 3.85
2778 3159 7.502561 ACTTTCCTTATATGCCACCAAATACTC 59.497 37.037 0.00 0.00 0.00 2.59
3119 3500 1.902938 TCATCAACCACGGCATCAAA 58.097 45.000 0.00 0.00 0.00 2.69
3198 3579 0.683973 AGTGAGCTCCTTCACCACTG 59.316 55.000 12.15 0.00 46.81 3.66
3199 3580 1.428869 AAGTGAGCTCCTTCACCACT 58.571 50.000 12.15 3.51 46.81 4.00
3358 3739 3.065510 ACACCATGTCGACGAAGATCTAG 59.934 47.826 11.62 0.00 0.00 2.43
3515 3896 7.870445 CCCTATATCTGCTTTTGACTACTCTTC 59.130 40.741 0.00 0.00 0.00 2.87
3529 3910 2.388563 AGATGGGTCCCCTATATCTGCT 59.611 50.000 5.13 0.00 36.94 4.24
3798 4179 3.002348 GTGTGACTTGGCAGTTCTGTTAC 59.998 47.826 1.78 0.00 31.22 2.50
3799 4180 3.202906 GTGTGACTTGGCAGTTCTGTTA 58.797 45.455 1.78 0.00 31.22 2.41
3800 4181 2.017049 GTGTGACTTGGCAGTTCTGTT 58.983 47.619 1.78 0.00 31.22 3.16
3801 4182 1.065491 TGTGTGACTTGGCAGTTCTGT 60.065 47.619 1.78 0.00 31.22 3.41
3802 4183 1.667236 TGTGTGACTTGGCAGTTCTG 58.333 50.000 0.00 0.00 31.22 3.02
3803 4184 2.498167 GATGTGTGACTTGGCAGTTCT 58.502 47.619 0.00 0.00 31.22 3.01
3804 4185 1.195448 CGATGTGTGACTTGGCAGTTC 59.805 52.381 0.00 0.00 31.22 3.01
3805 4186 1.229428 CGATGTGTGACTTGGCAGTT 58.771 50.000 0.00 0.00 31.22 3.16
3806 4187 0.603707 CCGATGTGTGACTTGGCAGT 60.604 55.000 0.00 0.00 35.17 4.40
3807 4188 0.320683 TCCGATGTGTGACTTGGCAG 60.321 55.000 0.00 0.00 0.00 4.85
3808 4189 0.602638 GTCCGATGTGTGACTTGGCA 60.603 55.000 0.00 0.00 0.00 4.92
4387 4771 7.246674 TGTGCTGAAAGTCAGTAAAAGTAAG 57.753 36.000 7.08 0.00 45.94 2.34
4471 4855 4.002982 GCTCGTCATATATTTGGCCATCA 58.997 43.478 6.09 0.00 0.00 3.07
4489 4873 1.493950 GATTGACTCGGCCATGCTCG 61.494 60.000 2.24 0.00 0.00 5.03
4678 5062 3.575858 CGAAAGGATGCAGTGTAATCG 57.424 47.619 0.00 0.00 0.00 3.34
5239 5723 5.125578 GGAAACAGAATATTCCAAGGACCAC 59.874 44.000 11.92 0.00 43.73 4.16
5265 5749 5.060506 CGTACATCATATACTTTTGCCCCA 58.939 41.667 0.00 0.00 0.00 4.96
5559 6043 4.708726 AAATCAATAGCTCAACAGGCAC 57.291 40.909 0.00 0.00 0.00 5.01
5594 6078 1.769733 TGCATGCGTTTTGAGCTTTC 58.230 45.000 14.09 0.00 35.28 2.62
5596 6080 1.705256 CATGCATGCGTTTTGAGCTT 58.295 45.000 14.93 0.00 35.28 3.74
5597 6081 0.734942 GCATGCATGCGTTTTGAGCT 60.735 50.000 33.99 0.00 44.67 4.09
5645 6133 6.653740 CAGATCATAGGCATTCTCAAATAGCA 59.346 38.462 0.00 0.00 0.00 3.49
5646 6134 6.093771 CCAGATCATAGGCATTCTCAAATAGC 59.906 42.308 0.00 0.00 0.00 2.97
5720 6212 8.099364 TCTCTGTTAAATGAGTGGAAAACATC 57.901 34.615 6.05 0.00 0.00 3.06
5887 6379 8.809066 TGTCTTAACTCAGGCTATTAGTGTTTA 58.191 33.333 0.00 0.00 0.00 2.01
6252 6746 1.009675 GGCACAACACAGTTCAGCG 60.010 57.895 0.00 0.00 0.00 5.18
6295 6789 5.631096 GCTTTTTGCCTACTTTCATGACTTC 59.369 40.000 0.00 0.00 35.15 3.01
6299 6798 4.083324 CGAGCTTTTTGCCTACTTTCATGA 60.083 41.667 0.00 0.00 44.23 3.07
6317 6816 1.186200 TAGTGCCTGATTGACGAGCT 58.814 50.000 0.00 0.00 0.00 4.09
6318 6817 2.010145 TTAGTGCCTGATTGACGAGC 57.990 50.000 0.00 0.00 0.00 5.03
6319 6818 5.235186 CCTATTTTAGTGCCTGATTGACGAG 59.765 44.000 0.00 0.00 0.00 4.18
6320 6819 5.116180 CCTATTTTAGTGCCTGATTGACGA 58.884 41.667 0.00 0.00 0.00 4.20
6327 6826 5.190677 GCTTTACCCTATTTTAGTGCCTGA 58.809 41.667 0.00 0.00 0.00 3.86
6377 6876 1.595093 GCGTTTGGGATCAAGGTGGG 61.595 60.000 0.00 0.00 33.98 4.61
6383 6882 0.326595 TAGGCTGCGTTTGGGATCAA 59.673 50.000 0.00 0.00 0.00 2.57
6628 7130 9.737427 CTTGGTTTATACACACACACAAAATTA 57.263 29.630 0.00 0.00 0.00 1.40
6629 7131 8.470805 TCTTGGTTTATACACACACACAAAATT 58.529 29.630 0.00 0.00 0.00 1.82
6630 7132 8.001881 TCTTGGTTTATACACACACACAAAAT 57.998 30.769 0.00 0.00 0.00 1.82
6631 7133 7.392494 TCTTGGTTTATACACACACACAAAA 57.608 32.000 0.00 0.00 0.00 2.44
6632 7134 7.392494 TTCTTGGTTTATACACACACACAAA 57.608 32.000 0.00 0.00 0.00 2.83
6635 7137 7.023197 AGTTTCTTGGTTTATACACACACAC 57.977 36.000 0.00 0.00 0.00 3.82
6709 7211 9.809096 CAATTAGTGCTAGAGAAAGATGAAGTA 57.191 33.333 0.00 0.00 0.00 2.24
6729 7231 3.192001 AGTCCATTGCAGTGCACAATTAG 59.808 43.478 19.58 3.90 38.71 1.73
6890 7392 4.914312 ACACATACGTACCAATTTGACG 57.086 40.909 0.00 8.56 42.22 4.35
6936 7438 7.541091 GCTGCTCATCAACAATGAATATTATGG 59.459 37.037 0.00 0.00 43.78 2.74
6996 7498 3.761897 TGGTGGGGTTGACTCTTAATTG 58.238 45.455 0.00 0.00 0.00 2.32
6997 7499 4.292306 AGATGGTGGGGTTGACTCTTAATT 59.708 41.667 0.00 0.00 0.00 1.40
7146 7652 1.841663 CGCCGGACAAACCTGTTGAG 61.842 60.000 5.05 0.00 35.30 3.02
7220 7726 1.926561 TTGATCCGCGTGAGAGATTG 58.073 50.000 4.92 0.00 0.00 2.67
7302 7808 7.954835 TGTTCACTTCCTTTTGATCATTTCAT 58.045 30.769 0.00 0.00 33.34 2.57
7313 7819 7.725844 AGATTCCTATGTTGTTCACTTCCTTTT 59.274 33.333 0.00 0.00 0.00 2.27
7314 7820 7.234355 AGATTCCTATGTTGTTCACTTCCTTT 58.766 34.615 0.00 0.00 0.00 3.11
7315 7821 6.784031 AGATTCCTATGTTGTTCACTTCCTT 58.216 36.000 0.00 0.00 0.00 3.36
7316 7822 6.380079 AGATTCCTATGTTGTTCACTTCCT 57.620 37.500 0.00 0.00 0.00 3.36
7317 7823 7.331791 ACTAGATTCCTATGTTGTTCACTTCC 58.668 38.462 0.00 0.00 0.00 3.46
7318 7824 8.660373 CAACTAGATTCCTATGTTGTTCACTTC 58.340 37.037 0.00 0.00 33.86 3.01
7322 7828 6.595326 CAGCAACTAGATTCCTATGTTGTTCA 59.405 38.462 0.00 0.00 36.93 3.18
7372 7878 4.578871 TCTACAATGTACAACAGCTGCAT 58.421 39.130 15.27 5.74 0.00 3.96
7414 7924 8.033038 AGACGCTTGTTATCAACTATTCACTTA 58.967 33.333 0.00 0.00 0.00 2.24
7455 7966 8.099537 CCTCACAACTATCAGCCAGATAAATAT 58.900 37.037 0.00 0.00 38.69 1.28
7474 7985 0.531974 GAACACCAGACGCCTCACAA 60.532 55.000 0.00 0.00 0.00 3.33
7534 8048 1.635487 CATTTCTCCTGGGAAGGACCA 59.365 52.381 0.00 0.00 41.20 4.02
7595 8117 0.598065 GTTCAGTGCATCCACCCAAC 59.402 55.000 0.00 0.00 43.09 3.77
7597 8119 0.250858 CTGTTCAGTGCATCCACCCA 60.251 55.000 0.00 0.00 43.09 4.51
7598 8120 1.589716 GCTGTTCAGTGCATCCACCC 61.590 60.000 0.00 0.00 43.09 4.61
7599 8121 0.607489 AGCTGTTCAGTGCATCCACC 60.607 55.000 0.00 0.00 43.09 4.61
7600 8122 0.801251 GAGCTGTTCAGTGCATCCAC 59.199 55.000 0.00 0.00 42.39 4.02
7601 8123 0.321919 GGAGCTGTTCAGTGCATCCA 60.322 55.000 0.00 0.00 31.55 3.41
7602 8124 1.028868 GGGAGCTGTTCAGTGCATCC 61.029 60.000 0.00 0.00 0.00 3.51
7603 8125 1.028868 GGGGAGCTGTTCAGTGCATC 61.029 60.000 0.00 0.00 0.00 3.91
7604 8126 1.001641 GGGGAGCTGTTCAGTGCAT 60.002 57.895 0.00 0.00 0.00 3.96
7605 8127 1.708993 AAGGGGAGCTGTTCAGTGCA 61.709 55.000 0.00 0.00 0.00 4.57
7606 8128 1.073897 AAGGGGAGCTGTTCAGTGC 59.926 57.895 0.00 0.00 0.00 4.40
7607 8129 0.109342 ACAAGGGGAGCTGTTCAGTG 59.891 55.000 0.00 0.00 0.00 3.66
7608 8130 1.625818 CTACAAGGGGAGCTGTTCAGT 59.374 52.381 0.00 0.00 0.00 3.41
7609 8131 1.625818 ACTACAAGGGGAGCTGTTCAG 59.374 52.381 0.00 0.00 0.00 3.02
7610 8132 1.347707 CACTACAAGGGGAGCTGTTCA 59.652 52.381 0.00 0.00 0.00 3.18
7611 8133 1.348036 ACACTACAAGGGGAGCTGTTC 59.652 52.381 0.00 0.00 0.00 3.18
7612 8134 1.435256 ACACTACAAGGGGAGCTGTT 58.565 50.000 0.00 0.00 0.00 3.16
7618 8140 4.993705 AATTCAGAACACTACAAGGGGA 57.006 40.909 0.00 0.00 0.00 4.81
7627 8149 4.263905 TGCTCCCCATAAATTCAGAACACT 60.264 41.667 0.00 0.00 0.00 3.55
7644 8166 1.005450 TCCCCTATGTTTGTTGCTCCC 59.995 52.381 0.00 0.00 0.00 4.30
7690 8427 2.159156 GGAAGGCGGTTCAAAAACTTGT 60.159 45.455 0.41 0.00 36.82 3.16
7695 8432 3.828875 AAATGGAAGGCGGTTCAAAAA 57.171 38.095 0.41 0.00 36.82 1.94
7706 8443 8.437742 CGATCAAAAATTCTGAAAAATGGAAGG 58.562 33.333 0.00 0.00 0.00 3.46
7731 8468 5.470845 ACTTGAAAGTGTCAGAAAACTCG 57.529 39.130 0.00 0.00 37.98 4.18
7748 8485 9.734620 CAAAACTGATTCAGAATTTGTACTTGA 57.265 29.630 24.98 0.00 37.22 3.02
7755 8492 8.807667 ACTTAGCAAAACTGATTCAGAATTTG 57.192 30.769 26.89 26.89 40.69 2.32
7757 8494 8.401490 AGACTTAGCAAAACTGATTCAGAATT 57.599 30.769 20.33 11.30 35.18 2.17
7758 8495 7.663081 TGAGACTTAGCAAAACTGATTCAGAAT 59.337 33.333 20.33 5.86 35.18 2.40
7759 8496 6.992123 TGAGACTTAGCAAAACTGATTCAGAA 59.008 34.615 20.33 1.53 35.18 3.02
7760 8497 6.524734 TGAGACTTAGCAAAACTGATTCAGA 58.475 36.000 20.33 0.00 35.18 3.27
7761 8498 6.426328 ACTGAGACTTAGCAAAACTGATTCAG 59.574 38.462 12.17 12.17 37.52 3.02
7762 8499 6.291377 ACTGAGACTTAGCAAAACTGATTCA 58.709 36.000 0.00 0.00 0.00 2.57
7763 8500 6.793492 ACTGAGACTTAGCAAAACTGATTC 57.207 37.500 0.00 0.00 0.00 2.52
7764 8501 6.767902 TCAACTGAGACTTAGCAAAACTGATT 59.232 34.615 0.00 0.00 0.00 2.57
7765 8502 6.291377 TCAACTGAGACTTAGCAAAACTGAT 58.709 36.000 0.00 0.00 0.00 2.90
7766 8503 5.670485 TCAACTGAGACTTAGCAAAACTGA 58.330 37.500 0.00 0.00 0.00 3.41
7767 8504 5.991328 TCAACTGAGACTTAGCAAAACTG 57.009 39.130 0.00 0.00 0.00 3.16
7768 8505 5.049129 GCATCAACTGAGACTTAGCAAAACT 60.049 40.000 0.00 0.00 0.00 2.66
7769 8506 5.049129 AGCATCAACTGAGACTTAGCAAAAC 60.049 40.000 0.00 0.00 0.00 2.43
7770 8507 5.065914 AGCATCAACTGAGACTTAGCAAAA 58.934 37.500 0.00 0.00 0.00 2.44
7771 8508 4.645535 AGCATCAACTGAGACTTAGCAAA 58.354 39.130 0.00 0.00 0.00 3.68
7772 8509 4.277515 AGCATCAACTGAGACTTAGCAA 57.722 40.909 0.00 0.00 0.00 3.91
7773 8510 3.969287 AGCATCAACTGAGACTTAGCA 57.031 42.857 0.00 0.00 0.00 3.49
7774 8511 5.415221 AGTTAGCATCAACTGAGACTTAGC 58.585 41.667 0.00 0.00 37.37 3.09
7775 8512 7.600375 TCAAAGTTAGCATCAACTGAGACTTAG 59.400 37.037 0.00 0.00 38.74 2.18
7776 8513 7.441836 TCAAAGTTAGCATCAACTGAGACTTA 58.558 34.615 0.00 0.00 38.74 2.24
7777 8514 6.291377 TCAAAGTTAGCATCAACTGAGACTT 58.709 36.000 0.00 0.00 38.74 3.01
7778 8515 5.858381 TCAAAGTTAGCATCAACTGAGACT 58.142 37.500 0.00 0.00 38.74 3.24
7779 8516 6.593382 AGATCAAAGTTAGCATCAACTGAGAC 59.407 38.462 0.00 0.00 38.74 3.36
7780 8517 6.705302 AGATCAAAGTTAGCATCAACTGAGA 58.295 36.000 0.00 2.45 38.74 3.27
7781 8518 6.981762 AGATCAAAGTTAGCATCAACTGAG 57.018 37.500 0.00 0.00 38.74 3.35
7782 8519 6.348786 GCAAGATCAAAGTTAGCATCAACTGA 60.349 38.462 0.00 0.00 38.74 3.41
7783 8520 5.798934 GCAAGATCAAAGTTAGCATCAACTG 59.201 40.000 0.00 0.00 38.74 3.16
7784 8521 5.474532 TGCAAGATCAAAGTTAGCATCAACT 59.525 36.000 0.00 0.00 40.49 3.16
7785 8522 5.702865 TGCAAGATCAAAGTTAGCATCAAC 58.297 37.500 0.00 0.00 0.00 3.18
7786 8523 5.963176 TGCAAGATCAAAGTTAGCATCAA 57.037 34.783 0.00 0.00 0.00 2.57
7787 8524 5.648960 TCATGCAAGATCAAAGTTAGCATCA 59.351 36.000 0.00 0.00 39.00 3.07
7788 8525 6.127810 TCATGCAAGATCAAAGTTAGCATC 57.872 37.500 0.00 0.00 39.00 3.91
7789 8526 6.376299 TCTTCATGCAAGATCAAAGTTAGCAT 59.624 34.615 0.00 0.00 41.42 3.79
7790 8527 5.706833 TCTTCATGCAAGATCAAAGTTAGCA 59.293 36.000 0.00 0.00 36.08 3.49
7791 8528 6.187125 TCTTCATGCAAGATCAAAGTTAGC 57.813 37.500 0.00 0.00 36.08 3.09
7857 8594 9.895138 TGGCTACGTCAAGTGATATATAGTATA 57.105 33.333 0.00 0.00 0.00 1.47
7858 8595 8.675504 GTGGCTACGTCAAGTGATATATAGTAT 58.324 37.037 0.00 0.00 0.00 2.12
7859 8596 7.662669 TGTGGCTACGTCAAGTGATATATAGTA 59.337 37.037 0.00 0.00 0.00 1.82
7860 8597 6.489022 TGTGGCTACGTCAAGTGATATATAGT 59.511 38.462 0.00 0.00 0.00 2.12
7861 8598 6.802348 GTGTGGCTACGTCAAGTGATATATAG 59.198 42.308 0.00 0.00 0.00 1.31
7862 8599 6.294342 GGTGTGGCTACGTCAAGTGATATATA 60.294 42.308 0.00 0.00 0.00 0.86
7863 8600 5.509163 GGTGTGGCTACGTCAAGTGATATAT 60.509 44.000 0.00 0.00 0.00 0.86
7864 8601 4.202080 GGTGTGGCTACGTCAAGTGATATA 60.202 45.833 0.00 0.00 0.00 0.86
7865 8602 3.430374 GGTGTGGCTACGTCAAGTGATAT 60.430 47.826 0.00 0.00 0.00 1.63
7866 8603 2.094390 GGTGTGGCTACGTCAAGTGATA 60.094 50.000 0.00 0.00 0.00 2.15
7867 8604 1.337823 GGTGTGGCTACGTCAAGTGAT 60.338 52.381 0.00 0.00 0.00 3.06
7868 8605 0.032952 GGTGTGGCTACGTCAAGTGA 59.967 55.000 0.00 0.00 0.00 3.41
7869 8606 0.949105 GGGTGTGGCTACGTCAAGTG 60.949 60.000 0.00 0.00 0.00 3.16
7870 8607 1.370064 GGGTGTGGCTACGTCAAGT 59.630 57.895 0.00 0.00 0.00 3.16
7871 8608 0.670546 CTGGGTGTGGCTACGTCAAG 60.671 60.000 0.00 0.00 0.00 3.02
7872 8609 1.116536 TCTGGGTGTGGCTACGTCAA 61.117 55.000 0.00 0.00 0.00 3.18
7873 8610 0.902984 ATCTGGGTGTGGCTACGTCA 60.903 55.000 0.00 0.00 0.00 4.35
7874 8611 1.067212 CTATCTGGGTGTGGCTACGTC 59.933 57.143 0.00 0.00 0.00 4.34
7875 8612 1.112113 CTATCTGGGTGTGGCTACGT 58.888 55.000 0.00 0.00 0.00 3.57
7876 8613 1.399714 TCTATCTGGGTGTGGCTACG 58.600 55.000 0.00 0.00 0.00 3.51
7877 8614 5.546621 TTATTCTATCTGGGTGTGGCTAC 57.453 43.478 0.00 0.00 0.00 3.58
7878 8615 5.665812 ACTTTATTCTATCTGGGTGTGGCTA 59.334 40.000 0.00 0.00 0.00 3.93
7879 8616 4.475016 ACTTTATTCTATCTGGGTGTGGCT 59.525 41.667 0.00 0.00 0.00 4.75
7880 8617 4.576463 CACTTTATTCTATCTGGGTGTGGC 59.424 45.833 0.00 0.00 0.00 5.01
7881 8618 4.576463 GCACTTTATTCTATCTGGGTGTGG 59.424 45.833 0.00 0.00 0.00 4.17
7882 8619 5.431765 AGCACTTTATTCTATCTGGGTGTG 58.568 41.667 0.00 0.00 0.00 3.82
7883 8620 5.700402 AGCACTTTATTCTATCTGGGTGT 57.300 39.130 0.00 0.00 0.00 4.16
7884 8621 7.011482 GTGTTAGCACTTTATTCTATCTGGGTG 59.989 40.741 1.96 0.00 42.13 4.61
7885 8622 7.048512 GTGTTAGCACTTTATTCTATCTGGGT 58.951 38.462 1.96 0.00 42.13 4.51
7886 8623 6.201044 CGTGTTAGCACTTTATTCTATCTGGG 59.799 42.308 8.15 0.00 43.16 4.45
7887 8624 6.757010 ACGTGTTAGCACTTTATTCTATCTGG 59.243 38.462 8.15 0.00 43.16 3.86
7888 8625 7.275779 ACACGTGTTAGCACTTTATTCTATCTG 59.724 37.037 17.22 0.00 43.16 2.90
7889 8626 7.321153 ACACGTGTTAGCACTTTATTCTATCT 58.679 34.615 17.22 0.00 43.16 1.98
7890 8627 7.521509 ACACGTGTTAGCACTTTATTCTATC 57.478 36.000 17.22 0.00 43.16 2.08
7891 8628 7.900782 AACACGTGTTAGCACTTTATTCTAT 57.099 32.000 31.49 1.64 43.16 1.98
7892 8629 7.718272 AAACACGTGTTAGCACTTTATTCTA 57.282 32.000 32.47 0.00 43.16 2.10
7899 8636 7.867752 ACAATATAAAACACGTGTTAGCACTT 58.132 30.769 32.47 23.73 43.16 3.16
7903 8640 7.269724 GTGGAACAATATAAAACACGTGTTAGC 59.730 37.037 32.47 12.55 44.16 3.09
7936 8746 6.274579 TGTTTCTACTCAATTGACGTGTACA 58.725 36.000 3.38 0.00 0.00 2.90
7946 8756 8.827177 TGTATTCTCGTTGTTTCTACTCAATT 57.173 30.769 0.00 0.00 0.00 2.32
8009 8819 7.093945 ACCATAAATTTACGGCATTCTTTGTCT 60.094 33.333 10.19 0.00 0.00 3.41
8021 8831 7.367159 TGTCACTACAACCATAAATTTACGG 57.633 36.000 8.75 8.75 30.91 4.02
8067 8877 5.701290 GGAGACAAACATACACTGCTACTTT 59.299 40.000 0.00 0.00 0.00 2.66
8073 8977 2.778299 TGGGAGACAAACATACACTGC 58.222 47.619 0.00 0.00 0.00 4.40
8084 8988 5.843969 TCCATATACTGCTATTGGGAGACAA 59.156 40.000 0.00 0.00 44.54 3.18
8094 8998 6.209589 CCGGTAGCATATCCATATACTGCTAT 59.790 42.308 5.92 0.00 36.11 2.97
8118 9022 5.529060 CAGAAGAGATTTATACCAACAGCCC 59.471 44.000 0.00 0.00 0.00 5.19
8119 9023 5.529060 CCAGAAGAGATTTATACCAACAGCC 59.471 44.000 0.00 0.00 0.00 4.85
8195 9100 0.679321 GAGCTTTCTTCTGCCCAGGG 60.679 60.000 0.00 0.00 0.00 4.45
8219 9124 3.424039 CGTATTGATCATCAATCGCAGCC 60.424 47.826 16.46 0.00 43.03 4.85
8262 9167 4.104776 CAAAGATCAACGTTGTTGCTTGT 58.895 39.130 26.47 14.77 34.30 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.