Multiple sequence alignment - TraesCS7B01G135400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G135400 chr7B 100.000 3317 0 0 1 3317 165527101 165530417 0.000000e+00 6126
1 TraesCS7B01G135400 chr7B 94.048 420 25 0 1 420 165322549 165322968 3.610000e-179 638
2 TraesCS7B01G135400 chr7D 95.426 1268 49 2 1151 2409 201977817 201979084 0.000000e+00 2012
3 TraesCS7B01G135400 chr7D 93.692 967 51 6 1574 2530 202054890 202055856 0.000000e+00 1439
4 TraesCS7B01G135400 chr7D 90.762 801 35 17 2546 3317 202055840 202056630 0.000000e+00 1033
5 TraesCS7B01G135400 chr7D 93.970 398 12 2 708 1093 201977389 201977786 2.850000e-165 592
6 TraesCS7B01G135400 chr7D 79.762 420 45 25 990 1379 202054142 202054551 5.450000e-68 268
7 TraesCS7B01G135400 chr7A 94.943 1048 45 6 1490 2530 214431883 214432929 0.000000e+00 1635
8 TraesCS7B01G135400 chr7A 93.443 854 44 4 708 1549 214431028 214431881 0.000000e+00 1256
9 TraesCS7B01G135400 chr7A 96.737 613 19 1 2706 3317 214433020 214433632 0.000000e+00 1020
10 TraesCS7B01G135400 chr7A 92.568 148 8 2 2546 2691 214432913 214433059 3.350000e-50 209
11 TraesCS7B01G135400 chr2B 87.321 418 39 11 7 420 339452018 339452425 1.800000e-127 466
12 TraesCS7B01G135400 chr6D 86.199 413 49 7 12 420 201552197 201552605 1.090000e-119 440
13 TraesCS7B01G135400 chr5B 85.211 426 43 16 1 420 158251293 158250882 1.420000e-113 420
14 TraesCS7B01G135400 chr5B 84.742 426 45 16 1 420 158244456 158244045 3.080000e-110 409
15 TraesCS7B01G135400 chr5B 84.742 426 45 16 1 420 158247874 158247463 3.080000e-110 409
16 TraesCS7B01G135400 chr5B 84.272 426 47 16 1 420 158241034 158240623 6.670000e-107 398
17 TraesCS7B01G135400 chr5B 75.765 425 48 41 11 420 256634594 256634978 2.650000e-36 163
18 TraesCS7B01G135400 chr5A 85.203 419 35 13 1 417 244282620 244283013 3.980000e-109 405
19 TraesCS7B01G135400 chr4D 83.373 415 59 9 12 420 304687268 304687678 3.120000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G135400 chr7B 165527101 165530417 3316 False 6126.000000 6126 100.00000 1 3317 1 chr7B.!!$F2 3316
1 TraesCS7B01G135400 chr7D 201977389 201979084 1695 False 1302.000000 2012 94.69800 708 2409 2 chr7D.!!$F1 1701
2 TraesCS7B01G135400 chr7D 202054142 202056630 2488 False 913.333333 1439 88.07200 990 3317 3 chr7D.!!$F2 2327
3 TraesCS7B01G135400 chr7A 214431028 214433632 2604 False 1030.000000 1635 94.42275 708 3317 4 chr7A.!!$F1 2609
4 TraesCS7B01G135400 chr5B 158240623 158251293 10670 True 409.000000 420 84.74175 1 420 4 chr5B.!!$R1 419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 10719 0.027455 TTCGTTTGTGAGCTGTTGCG 59.973 50.0 0.00 0.00 45.42 4.85 F
467 10723 0.029300 TTTGTGAGCTGTTGCGCTTC 59.971 50.0 9.73 1.72 45.42 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 12243 0.106967 GAAGTGGAATGGGAGCCTCC 60.107 60.0 0.73 0.73 35.23 4.30 R
2339 12900 0.379669 TCGATCTTAGTTCCGGCGAC 59.620 55.0 9.30 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.688477 ACTCATCCTCCTCCTCCATTC 58.312 52.381 0.00 0.00 0.00 2.67
26 27 2.249743 ACTCATCCTCCTCCTCCATTCT 59.750 50.000 0.00 0.00 0.00 2.40
27 28 3.469006 ACTCATCCTCCTCCTCCATTCTA 59.531 47.826 0.00 0.00 0.00 2.10
30 31 1.505538 TCCTCCTCCTCCATTCTAGGG 59.494 57.143 0.00 0.00 34.66 3.53
31 32 1.221781 CCTCCTCCTCCATTCTAGGGT 59.778 57.143 0.00 0.00 34.66 4.34
32 33 2.360854 CCTCCTCCTCCATTCTAGGGTT 60.361 54.545 0.00 0.00 34.66 4.11
33 34 3.116707 CCTCCTCCTCCATTCTAGGGTTA 60.117 52.174 0.00 0.00 34.66 2.85
34 35 4.156477 CTCCTCCTCCATTCTAGGGTTAG 58.844 52.174 0.00 0.00 34.66 2.34
35 36 2.635427 CCTCCTCCATTCTAGGGTTAGC 59.365 54.545 0.00 0.00 34.66 3.09
38 39 4.307259 TCCTCCATTCTAGGGTTAGCATT 58.693 43.478 0.00 0.00 34.66 3.56
39 40 4.726825 TCCTCCATTCTAGGGTTAGCATTT 59.273 41.667 0.00 0.00 34.66 2.32
40 41 5.193728 TCCTCCATTCTAGGGTTAGCATTTT 59.806 40.000 0.00 0.00 34.66 1.82
54 55 6.199719 GGTTAGCATTTTGATAGCTCATTTGC 59.800 38.462 0.00 0.00 39.68 3.68
62 63 4.773013 TGATAGCTCATTTGCATGTGAGA 58.227 39.130 24.87 11.12 43.50 3.27
69 70 4.740268 TCATTTGCATGTGAGATTTGCTC 58.260 39.130 0.00 0.00 44.21 4.26
72 73 2.799017 TGCATGTGAGATTTGCTCCTT 58.201 42.857 0.00 0.00 43.26 3.36
73 74 3.954200 TGCATGTGAGATTTGCTCCTTA 58.046 40.909 0.00 0.00 43.26 2.69
74 75 3.691118 TGCATGTGAGATTTGCTCCTTAC 59.309 43.478 0.00 0.00 43.26 2.34
75 76 3.065925 GCATGTGAGATTTGCTCCTTACC 59.934 47.826 0.00 0.00 43.26 2.85
77 78 2.026262 TGTGAGATTTGCTCCTTACCCC 60.026 50.000 0.00 0.00 43.26 4.95
78 79 1.564348 TGAGATTTGCTCCTTACCCCC 59.436 52.381 0.00 0.00 43.26 5.40
79 80 1.564348 GAGATTTGCTCCTTACCCCCA 59.436 52.381 0.00 0.00 37.69 4.96
83 84 1.213296 TTGCTCCTTACCCCCATCTC 58.787 55.000 0.00 0.00 0.00 2.75
101 102 4.860802 TCTCCTCTTGAGAGAGTGAGAT 57.139 45.455 9.55 0.00 45.29 2.75
102 103 5.191727 TCTCCTCTTGAGAGAGTGAGATT 57.808 43.478 9.55 0.00 45.29 2.40
103 104 4.949238 TCTCCTCTTGAGAGAGTGAGATTG 59.051 45.833 9.55 0.00 45.29 2.67
104 105 4.928263 TCCTCTTGAGAGAGTGAGATTGA 58.072 43.478 9.55 0.00 46.59 2.57
106 107 5.360429 TCCTCTTGAGAGAGTGAGATTGATG 59.640 44.000 9.55 0.00 46.59 3.07
118 6951 3.054213 TGAGATTGATGCACTCCATTGGA 60.054 43.478 5.05 5.05 33.29 3.53
207 7040 3.913163 AGGATTCAAGACCTCAACTCCTT 59.087 43.478 0.00 0.00 0.00 3.36
208 7041 4.352298 AGGATTCAAGACCTCAACTCCTTT 59.648 41.667 0.00 0.00 0.00 3.11
242 7075 7.288158 GGGATGAACTAGTTACCTCTTGTATCT 59.712 40.741 8.42 0.00 34.58 1.98
258 7091 9.219603 CTCTTGTATCTTCTTGTGTTGGATTTA 57.780 33.333 0.00 0.00 0.00 1.40
259 7092 9.567776 TCTTGTATCTTCTTGTGTTGGATTTAA 57.432 29.630 0.00 0.00 0.00 1.52
276 7109 8.165267 TGGATTTAAACCTTTGTATCCCTCTA 57.835 34.615 0.00 0.00 33.82 2.43
306 7139 7.828508 ATGTGGATTTAGCATATGTGTGATT 57.171 32.000 4.29 0.00 0.00 2.57
308 7141 6.039605 TGTGGATTTAGCATATGTGTGATTGG 59.960 38.462 4.29 0.00 0.00 3.16
310 7143 7.005902 TGGATTTAGCATATGTGTGATTGGAT 58.994 34.615 4.29 0.00 0.00 3.41
313 7146 8.701908 ATTTAGCATATGTGTGATTGGATCTT 57.298 30.769 4.29 0.00 0.00 2.40
315 7148 5.443283 AGCATATGTGTGATTGGATCTTGT 58.557 37.500 4.29 0.00 0.00 3.16
316 7149 5.530171 AGCATATGTGTGATTGGATCTTGTC 59.470 40.000 4.29 0.00 0.00 3.18
317 7150 5.530171 GCATATGTGTGATTGGATCTTGTCT 59.470 40.000 4.29 0.00 0.00 3.41
321 7154 6.990341 TGTGTGATTGGATCTTGTCTATTG 57.010 37.500 0.00 0.00 0.00 1.90
332 7165 5.825593 TCTTGTCTATTGGAGTGTTTCCT 57.174 39.130 0.00 0.00 46.92 3.36
333 7166 5.794894 TCTTGTCTATTGGAGTGTTTCCTC 58.205 41.667 0.00 0.00 46.92 3.71
335 7168 5.407407 TGTCTATTGGAGTGTTTCCTCTC 57.593 43.478 0.00 0.00 46.92 3.20
337 7170 5.544176 TGTCTATTGGAGTGTTTCCTCTCTT 59.456 40.000 0.00 0.00 46.92 2.85
342 7175 4.855340 TGGAGTGTTTCCTCTCTTTTGTT 58.145 39.130 0.00 0.00 46.92 2.83
358 10604 7.484641 TCTCTTTTGTTTTTCTTGTGTTCATCG 59.515 33.333 0.00 0.00 0.00 3.84
360 10606 7.596995 TCTTTTGTTTTTCTTGTGTTCATCGTT 59.403 29.630 0.00 0.00 0.00 3.85
366 10612 7.734538 TTTTCTTGTGTTCATCGTTTTCTTC 57.265 32.000 0.00 0.00 0.00 2.87
368 10614 3.870723 TGTGTTCATCGTTTTCTTCGG 57.129 42.857 0.00 0.00 0.00 4.30
370 10616 2.803956 GTGTTCATCGTTTTCTTCGGGA 59.196 45.455 0.00 0.00 0.00 5.14
371 10617 3.064207 TGTTCATCGTTTTCTTCGGGAG 58.936 45.455 0.00 0.00 0.00 4.30
372 10618 3.243941 TGTTCATCGTTTTCTTCGGGAGA 60.244 43.478 0.00 0.00 0.00 3.71
374 10620 3.782046 TCATCGTTTTCTTCGGGAGATC 58.218 45.455 0.00 0.00 39.57 2.75
397 10653 2.609459 CCTCCATTTCGTGAAAGATCGG 59.391 50.000 1.20 0.14 33.32 4.18
407 10663 1.004361 AAAGATCGGCCCCTAGGGT 59.996 57.895 26.66 7.39 46.51 4.34
410 10666 1.459730 GATCGGCCCCTAGGGTTCT 60.460 63.158 26.66 6.20 46.51 3.01
427 10683 5.203060 GGTTCTACCCTACATTAGCTCAG 57.797 47.826 0.00 0.00 30.04 3.35
428 10684 4.039366 GGTTCTACCCTACATTAGCTCAGG 59.961 50.000 0.00 0.00 30.04 3.86
429 10685 4.537945 TCTACCCTACATTAGCTCAGGT 57.462 45.455 0.00 0.00 0.00 4.00
430 10686 4.880164 TCTACCCTACATTAGCTCAGGTT 58.120 43.478 0.00 0.00 0.00 3.50
431 10687 5.278061 TCTACCCTACATTAGCTCAGGTTT 58.722 41.667 0.00 0.00 0.00 3.27
432 10688 4.489306 ACCCTACATTAGCTCAGGTTTC 57.511 45.455 0.00 0.00 0.00 2.78
433 10689 3.200165 ACCCTACATTAGCTCAGGTTTCC 59.800 47.826 0.00 0.00 0.00 3.13
434 10690 3.433740 CCCTACATTAGCTCAGGTTTCCC 60.434 52.174 0.00 0.00 0.00 3.97
435 10691 2.808906 ACATTAGCTCAGGTTTCCCC 57.191 50.000 0.00 0.00 0.00 4.81
437 10693 3.460825 ACATTAGCTCAGGTTTCCCCTA 58.539 45.455 0.00 0.00 43.86 3.53
438 10694 3.200165 ACATTAGCTCAGGTTTCCCCTAC 59.800 47.826 0.00 0.00 43.86 3.18
439 10695 2.634639 TAGCTCAGGTTTCCCCTACA 57.365 50.000 0.00 0.00 43.86 2.74
440 10696 0.984995 AGCTCAGGTTTCCCCTACAC 59.015 55.000 0.00 0.00 43.86 2.90
441 10697 0.690762 GCTCAGGTTTCCCCTACACA 59.309 55.000 0.00 0.00 43.86 3.72
442 10698 1.282157 GCTCAGGTTTCCCCTACACAT 59.718 52.381 0.00 0.00 43.86 3.21
443 10699 2.681097 GCTCAGGTTTCCCCTACACATC 60.681 54.545 0.00 0.00 43.86 3.06
444 10700 2.840651 CTCAGGTTTCCCCTACACATCT 59.159 50.000 0.00 0.00 43.86 2.90
445 10701 3.256704 TCAGGTTTCCCCTACACATCTT 58.743 45.455 0.00 0.00 43.86 2.40
446 10702 3.263425 TCAGGTTTCCCCTACACATCTTC 59.737 47.826 0.00 0.00 43.86 2.87
447 10703 2.236395 AGGTTTCCCCTACACATCTTCG 59.764 50.000 0.00 0.00 43.87 3.79
448 10704 2.027469 GGTTTCCCCTACACATCTTCGT 60.027 50.000 0.00 0.00 0.00 3.85
449 10705 3.558533 GGTTTCCCCTACACATCTTCGTT 60.559 47.826 0.00 0.00 0.00 3.85
450 10706 4.070009 GTTTCCCCTACACATCTTCGTTT 58.930 43.478 0.00 0.00 0.00 3.60
451 10707 3.328382 TCCCCTACACATCTTCGTTTG 57.672 47.619 0.00 0.00 0.00 2.93
452 10708 2.635915 TCCCCTACACATCTTCGTTTGT 59.364 45.455 0.00 0.00 0.00 2.83
453 10709 2.742053 CCCCTACACATCTTCGTTTGTG 59.258 50.000 1.74 1.74 46.76 3.33
454 10710 3.556213 CCCCTACACATCTTCGTTTGTGA 60.556 47.826 9.80 0.00 44.74 3.58
455 10711 3.679980 CCCTACACATCTTCGTTTGTGAG 59.320 47.826 9.80 3.65 44.74 3.51
456 10712 3.123621 CCTACACATCTTCGTTTGTGAGC 59.876 47.826 9.80 0.00 44.74 4.26
457 10713 2.838736 ACACATCTTCGTTTGTGAGCT 58.161 42.857 9.80 0.00 44.74 4.09
458 10714 2.545526 ACACATCTTCGTTTGTGAGCTG 59.454 45.455 9.80 0.00 44.74 4.24
459 10715 2.545526 CACATCTTCGTTTGTGAGCTGT 59.454 45.455 0.00 0.00 44.74 4.40
460 10716 3.002656 CACATCTTCGTTTGTGAGCTGTT 59.997 43.478 0.00 0.00 44.74 3.16
461 10717 3.002656 ACATCTTCGTTTGTGAGCTGTTG 59.997 43.478 0.00 0.00 0.00 3.33
462 10718 1.330521 TCTTCGTTTGTGAGCTGTTGC 59.669 47.619 0.00 0.00 40.05 4.17
463 10719 0.027455 TTCGTTTGTGAGCTGTTGCG 59.973 50.000 0.00 0.00 45.42 4.85
464 10720 2.005537 CGTTTGTGAGCTGTTGCGC 61.006 57.895 0.00 0.00 45.42 6.09
465 10721 1.356624 GTTTGTGAGCTGTTGCGCT 59.643 52.632 9.73 0.00 45.42 5.92
466 10722 0.248621 GTTTGTGAGCTGTTGCGCTT 60.249 50.000 9.73 0.00 45.42 4.68
467 10723 0.029300 TTTGTGAGCTGTTGCGCTTC 59.971 50.000 9.73 1.72 45.42 3.86
468 10724 0.815213 TTGTGAGCTGTTGCGCTTCT 60.815 50.000 9.73 0.00 45.42 2.85
469 10725 0.033366 TGTGAGCTGTTGCGCTTCTA 59.967 50.000 9.73 0.00 45.42 2.10
470 10726 0.440371 GTGAGCTGTTGCGCTTCTAC 59.560 55.000 9.73 2.11 45.42 2.59
471 10727 1.008875 TGAGCTGTTGCGCTTCTACG 61.009 55.000 9.73 0.35 45.42 3.51
472 10728 1.687494 GAGCTGTTGCGCTTCTACGG 61.687 60.000 9.73 7.91 45.42 4.02
473 10729 2.778679 CTGTTGCGCTTCTACGGC 59.221 61.111 9.73 0.00 0.00 5.68
474 10730 1.738099 CTGTTGCGCTTCTACGGCT 60.738 57.895 9.73 0.00 0.00 5.52
475 10731 1.959899 CTGTTGCGCTTCTACGGCTG 61.960 60.000 9.73 0.00 0.00 4.85
476 10732 2.434185 TTGCGCTTCTACGGCTGG 60.434 61.111 9.73 0.00 0.00 4.85
477 10733 3.950794 TTGCGCTTCTACGGCTGGG 62.951 63.158 9.73 0.00 0.00 4.45
478 10734 4.143333 GCGCTTCTACGGCTGGGA 62.143 66.667 0.00 0.00 0.00 4.37
479 10735 2.105128 CGCTTCTACGGCTGGGAG 59.895 66.667 0.00 0.00 0.00 4.30
480 10736 2.202946 GCTTCTACGGCTGGGAGC 60.203 66.667 0.00 0.00 41.46 4.70
481 10737 2.726351 GCTTCTACGGCTGGGAGCT 61.726 63.158 0.00 0.00 41.99 4.09
482 10738 1.392710 GCTTCTACGGCTGGGAGCTA 61.393 60.000 0.00 0.00 41.99 3.32
483 10739 0.386113 CTTCTACGGCTGGGAGCTAC 59.614 60.000 0.00 0.00 41.99 3.58
484 10740 0.323999 TTCTACGGCTGGGAGCTACA 60.324 55.000 0.00 0.00 41.99 2.74
485 10741 0.752009 TCTACGGCTGGGAGCTACAG 60.752 60.000 12.36 12.36 41.99 2.74
491 10747 3.376218 CTGGGAGCTACAGCACATC 57.624 57.895 0.00 0.00 45.16 3.06
492 10748 0.829333 CTGGGAGCTACAGCACATCT 59.171 55.000 0.00 0.00 45.16 2.90
493 10749 0.826715 TGGGAGCTACAGCACATCTC 59.173 55.000 0.00 0.00 45.16 2.75
494 10750 0.826715 GGGAGCTACAGCACATCTCA 59.173 55.000 0.00 0.00 45.16 3.27
495 10751 1.415659 GGGAGCTACAGCACATCTCAT 59.584 52.381 0.00 0.00 45.16 2.90
496 10752 2.158842 GGGAGCTACAGCACATCTCATT 60.159 50.000 0.00 0.00 45.16 2.57
497 10753 3.129871 GGAGCTACAGCACATCTCATTC 58.870 50.000 3.70 0.00 45.16 2.67
498 10754 3.129871 GAGCTACAGCACATCTCATTCC 58.870 50.000 3.70 0.00 45.16 3.01
499 10755 2.158842 AGCTACAGCACATCTCATTCCC 60.159 50.000 3.70 0.00 45.16 3.97
500 10756 2.420547 GCTACAGCACATCTCATTCCCA 60.421 50.000 0.00 0.00 41.59 4.37
501 10757 2.119801 ACAGCACATCTCATTCCCAC 57.880 50.000 0.00 0.00 0.00 4.61
502 10758 1.340405 ACAGCACATCTCATTCCCACC 60.340 52.381 0.00 0.00 0.00 4.61
503 10759 0.994247 AGCACATCTCATTCCCACCA 59.006 50.000 0.00 0.00 0.00 4.17
504 10760 1.355381 AGCACATCTCATTCCCACCAA 59.645 47.619 0.00 0.00 0.00 3.67
505 10761 2.170166 GCACATCTCATTCCCACCAAA 58.830 47.619 0.00 0.00 0.00 3.28
506 10762 2.094545 GCACATCTCATTCCCACCAAAC 60.095 50.000 0.00 0.00 0.00 2.93
507 10763 2.162208 CACATCTCATTCCCACCAAACG 59.838 50.000 0.00 0.00 0.00 3.60
508 10764 1.745087 CATCTCATTCCCACCAAACGG 59.255 52.381 0.00 0.00 0.00 4.44
509 10765 0.037590 TCTCATTCCCACCAAACGGG 59.962 55.000 0.00 0.00 46.03 5.28
510 10766 0.965363 CTCATTCCCACCAAACGGGG 60.965 60.000 0.00 0.00 44.62 5.73
511 10767 1.228737 CATTCCCACCAAACGGGGT 60.229 57.895 0.00 0.00 44.62 4.95
512 10768 0.830023 CATTCCCACCAAACGGGGTT 60.830 55.000 0.00 0.00 44.62 4.11
513 10769 0.541063 ATTCCCACCAAACGGGGTTC 60.541 55.000 0.00 0.00 44.62 3.62
514 10770 1.647334 TTCCCACCAAACGGGGTTCT 61.647 55.000 0.00 0.00 44.62 3.01
515 10771 1.152631 CCCACCAAACGGGGTTCTT 60.153 57.895 0.00 0.00 39.79 2.52
516 10772 1.176619 CCCACCAAACGGGGTTCTTC 61.177 60.000 0.00 0.00 39.79 2.87
517 10773 0.466555 CCACCAAACGGGGTTCTTCA 60.467 55.000 0.00 0.00 39.79 3.02
518 10774 0.666374 CACCAAACGGGGTTCTTCAC 59.334 55.000 0.00 0.00 39.79 3.18
519 10775 0.256464 ACCAAACGGGGTTCTTCACA 59.744 50.000 0.00 0.00 42.91 3.58
520 10776 1.133606 ACCAAACGGGGTTCTTCACAT 60.134 47.619 0.00 0.00 42.91 3.21
521 10777 1.960689 CCAAACGGGGTTCTTCACATT 59.039 47.619 0.00 0.00 0.00 2.71
522 10778 2.288152 CCAAACGGGGTTCTTCACATTG 60.288 50.000 0.00 0.00 0.00 2.82
523 10779 2.358322 AACGGGGTTCTTCACATTGT 57.642 45.000 0.00 0.00 0.00 2.71
524 10780 3.495434 AACGGGGTTCTTCACATTGTA 57.505 42.857 0.00 0.00 0.00 2.41
525 10781 3.495434 ACGGGGTTCTTCACATTGTAA 57.505 42.857 0.00 0.00 0.00 2.41
526 10782 3.822940 ACGGGGTTCTTCACATTGTAAA 58.177 40.909 0.00 0.00 0.00 2.01
527 10783 3.566742 ACGGGGTTCTTCACATTGTAAAC 59.433 43.478 0.00 0.00 0.00 2.01
528 10784 3.818773 CGGGGTTCTTCACATTGTAAACT 59.181 43.478 0.00 0.00 0.00 2.66
529 10785 4.277423 CGGGGTTCTTCACATTGTAAACTT 59.723 41.667 0.00 0.00 0.00 2.66
530 10786 5.562113 CGGGGTTCTTCACATTGTAAACTTC 60.562 44.000 0.00 0.00 0.00 3.01
531 10787 5.300792 GGGGTTCTTCACATTGTAAACTTCA 59.699 40.000 0.00 0.00 0.00 3.02
532 10788 6.015434 GGGGTTCTTCACATTGTAAACTTCAT 60.015 38.462 0.00 0.00 0.00 2.57
533 10789 7.084486 GGGTTCTTCACATTGTAAACTTCATC 58.916 38.462 0.00 0.00 0.00 2.92
534 10790 6.797033 GGTTCTTCACATTGTAAACTTCATCG 59.203 38.462 0.00 0.00 0.00 3.84
535 10791 7.352739 GTTCTTCACATTGTAAACTTCATCGT 58.647 34.615 0.00 0.00 0.00 3.73
536 10792 8.492748 GTTCTTCACATTGTAAACTTCATCGTA 58.507 33.333 0.00 0.00 0.00 3.43
537 10793 8.771920 TCTTCACATTGTAAACTTCATCGTAT 57.228 30.769 0.00 0.00 0.00 3.06
538 10794 9.214957 TCTTCACATTGTAAACTTCATCGTATT 57.785 29.630 0.00 0.00 0.00 1.89
539 10795 9.825972 CTTCACATTGTAAACTTCATCGTATTT 57.174 29.630 0.00 0.00 0.00 1.40
541 10797 9.605955 TCACATTGTAAACTTCATCGTATTTTG 57.394 29.630 0.00 0.00 0.00 2.44
542 10798 8.365210 CACATTGTAAACTTCATCGTATTTTGC 58.635 33.333 0.00 0.00 0.00 3.68
543 10799 7.270365 ACATTGTAAACTTCATCGTATTTTGCG 59.730 33.333 0.00 0.00 0.00 4.85
544 10800 6.469139 TGTAAACTTCATCGTATTTTGCGA 57.531 33.333 0.00 0.00 42.75 5.10
545 10801 6.889494 TGTAAACTTCATCGTATTTTGCGAA 58.111 32.000 0.00 0.00 41.84 4.70
546 10802 7.523219 TGTAAACTTCATCGTATTTTGCGAAT 58.477 30.769 0.00 0.00 41.84 3.34
547 10803 6.853279 AAACTTCATCGTATTTTGCGAATG 57.147 33.333 0.00 0.00 41.84 2.67
548 10804 4.342772 ACTTCATCGTATTTTGCGAATGC 58.657 39.130 0.00 0.00 41.84 3.56
549 10805 4.094887 ACTTCATCGTATTTTGCGAATGCT 59.905 37.500 0.00 0.00 41.84 3.79
550 10806 4.614555 TCATCGTATTTTGCGAATGCTT 57.385 36.364 0.00 0.00 41.84 3.91
551 10807 4.980590 TCATCGTATTTTGCGAATGCTTT 58.019 34.783 0.00 0.00 41.84 3.51
552 10808 5.027737 TCATCGTATTTTGCGAATGCTTTC 58.972 37.500 2.28 2.28 41.84 2.62
553 10809 4.678509 TCGTATTTTGCGAATGCTTTCT 57.321 36.364 10.29 0.00 43.34 2.52
554 10810 4.402583 TCGTATTTTGCGAATGCTTTCTG 58.597 39.130 10.29 5.55 43.34 3.02
555 10811 3.543494 CGTATTTTGCGAATGCTTTCTGG 59.457 43.478 10.29 0.00 43.34 3.86
556 10812 2.437200 TTTTGCGAATGCTTTCTGGG 57.563 45.000 10.29 0.00 43.34 4.45
557 10813 0.602562 TTTGCGAATGCTTTCTGGGG 59.397 50.000 10.29 0.00 43.34 4.96
558 10814 0.251121 TTGCGAATGCTTTCTGGGGA 60.251 50.000 10.29 0.00 43.34 4.81
559 10815 0.960364 TGCGAATGCTTTCTGGGGAC 60.960 55.000 10.29 0.00 43.34 4.46
560 10816 0.960364 GCGAATGCTTTCTGGGGACA 60.960 55.000 10.29 0.00 38.39 4.02
570 10826 2.122413 TGGGGACAGCCACTCACT 60.122 61.111 0.00 0.00 38.87 3.41
571 10827 1.770110 TGGGGACAGCCACTCACTT 60.770 57.895 0.00 0.00 38.87 3.16
572 10828 1.352622 TGGGGACAGCCACTCACTTT 61.353 55.000 0.00 0.00 38.87 2.66
573 10829 0.890996 GGGGACAGCCACTCACTTTG 60.891 60.000 0.00 0.00 33.55 2.77
574 10830 0.108585 GGGACAGCCACTCACTTTGA 59.891 55.000 0.00 0.00 35.15 2.69
588 10844 6.771188 CTCACTTTGAGTTGTTTCGATACT 57.229 37.500 7.53 0.00 39.58 2.12
589 10845 7.178712 CTCACTTTGAGTTGTTTCGATACTT 57.821 36.000 7.53 0.00 39.58 2.24
590 10846 7.173863 TCACTTTGAGTTGTTTCGATACTTC 57.826 36.000 7.53 3.84 0.00 3.01
591 10847 6.984474 TCACTTTGAGTTGTTTCGATACTTCT 59.016 34.615 7.53 5.60 0.00 2.85
592 10848 7.494625 TCACTTTGAGTTGTTTCGATACTTCTT 59.505 33.333 7.53 0.00 0.00 2.52
593 10849 7.794349 CACTTTGAGTTGTTTCGATACTTCTTC 59.206 37.037 7.53 1.72 0.00 2.87
594 10850 6.780706 TTGAGTTGTTTCGATACTTCTTCC 57.219 37.500 7.53 0.00 0.00 3.46
595 10851 4.921515 TGAGTTGTTTCGATACTTCTTCCG 59.078 41.667 7.53 0.00 0.00 4.30
596 10852 4.243270 AGTTGTTTCGATACTTCTTCCGG 58.757 43.478 7.53 0.00 0.00 5.14
597 10853 3.241067 TGTTTCGATACTTCTTCCGGG 57.759 47.619 0.00 0.00 0.00 5.73
598 10854 2.564062 TGTTTCGATACTTCTTCCGGGT 59.436 45.455 0.00 0.00 0.00 5.28
599 10855 3.185330 GTTTCGATACTTCTTCCGGGTC 58.815 50.000 0.00 0.00 0.00 4.46
600 10856 2.431954 TCGATACTTCTTCCGGGTCT 57.568 50.000 0.00 0.00 0.00 3.85
601 10857 2.022195 TCGATACTTCTTCCGGGTCTG 58.978 52.381 0.00 0.00 0.00 3.51
602 10858 1.536284 CGATACTTCTTCCGGGTCTGC 60.536 57.143 0.00 0.00 0.00 4.26
603 10859 0.460311 ATACTTCTTCCGGGTCTGCG 59.540 55.000 0.00 0.00 0.00 5.18
604 10860 0.896940 TACTTCTTCCGGGTCTGCGT 60.897 55.000 0.00 0.00 0.00 5.24
605 10861 1.004918 CTTCTTCCGGGTCTGCGTT 60.005 57.895 0.00 0.00 0.00 4.84
606 10862 1.005394 TTCTTCCGGGTCTGCGTTC 60.005 57.895 0.00 0.00 0.00 3.95
607 10863 1.750341 TTCTTCCGGGTCTGCGTTCA 61.750 55.000 0.00 0.00 0.00 3.18
608 10864 1.738099 CTTCCGGGTCTGCGTTCAG 60.738 63.158 0.00 0.00 41.67 3.02
609 10865 2.154798 CTTCCGGGTCTGCGTTCAGA 62.155 60.000 0.00 0.00 46.43 3.27
619 10875 2.738480 CGTTCAGACCAACGGGGA 59.262 61.111 2.06 0.00 44.43 4.81
620 10876 1.666872 CGTTCAGACCAACGGGGAC 60.667 63.158 2.06 0.00 44.43 4.46
621 10877 1.448497 GTTCAGACCAACGGGGACA 59.552 57.895 2.06 0.00 41.15 4.02
622 10878 0.883370 GTTCAGACCAACGGGGACAC 60.883 60.000 2.06 0.00 41.15 3.67
623 10879 2.032071 CAGACCAACGGGGACACC 59.968 66.667 2.06 0.00 41.15 4.16
632 10888 2.668550 GGGGACACCGTCTGCAAC 60.669 66.667 0.00 0.00 37.78 4.17
633 10889 2.668550 GGGACACCGTCTGCAACC 60.669 66.667 0.00 0.00 32.47 3.77
634 10890 2.426023 GGACACCGTCTGCAACCT 59.574 61.111 0.00 0.00 32.47 3.50
635 10891 1.227853 GGACACCGTCTGCAACCTT 60.228 57.895 0.00 0.00 32.47 3.50
636 10892 1.507141 GGACACCGTCTGCAACCTTG 61.507 60.000 0.00 0.00 32.47 3.61
637 10893 1.507141 GACACCGTCTGCAACCTTGG 61.507 60.000 0.00 0.00 0.00 3.61
638 10894 1.227823 CACCGTCTGCAACCTTGGA 60.228 57.895 0.00 0.00 0.00 3.53
639 10895 1.071471 ACCGTCTGCAACCTTGGAG 59.929 57.895 0.28 0.28 46.51 3.86
640 10896 1.672356 CCGTCTGCAACCTTGGAGG 60.672 63.158 6.70 0.00 45.38 4.30
641 10897 1.371183 CGTCTGCAACCTTGGAGGA 59.629 57.895 6.70 0.00 45.38 3.71
642 10898 0.671781 CGTCTGCAACCTTGGAGGAG 60.672 60.000 6.70 0.00 45.38 3.69
643 10899 0.957888 GTCTGCAACCTTGGAGGAGC 60.958 60.000 6.70 5.28 45.38 4.70
644 10900 1.676967 CTGCAACCTTGGAGGAGCC 60.677 63.158 0.07 0.00 42.16 4.70
656 10912 2.268920 GGAGCCATTCCTGCGACA 59.731 61.111 0.00 0.00 43.16 4.35
657 10913 2.109126 GGAGCCATTCCTGCGACAC 61.109 63.158 0.00 0.00 43.16 3.67
658 10914 1.375908 GAGCCATTCCTGCGACACA 60.376 57.895 0.00 0.00 0.00 3.72
659 10915 1.639298 GAGCCATTCCTGCGACACAC 61.639 60.000 0.00 0.00 0.00 3.82
660 10916 2.690778 GCCATTCCTGCGACACACC 61.691 63.158 0.00 0.00 0.00 4.16
661 10917 1.302431 CCATTCCTGCGACACACCA 60.302 57.895 0.00 0.00 0.00 4.17
662 10918 0.888736 CCATTCCTGCGACACACCAA 60.889 55.000 0.00 0.00 0.00 3.67
663 10919 0.950836 CATTCCTGCGACACACCAAA 59.049 50.000 0.00 0.00 0.00 3.28
664 10920 1.336440 CATTCCTGCGACACACCAAAA 59.664 47.619 0.00 0.00 0.00 2.44
665 10921 1.686355 TTCCTGCGACACACCAAAAT 58.314 45.000 0.00 0.00 0.00 1.82
666 10922 1.686355 TCCTGCGACACACCAAAATT 58.314 45.000 0.00 0.00 0.00 1.82
667 10923 2.028130 TCCTGCGACACACCAAAATTT 58.972 42.857 0.00 0.00 0.00 1.82
668 10924 2.428890 TCCTGCGACACACCAAAATTTT 59.571 40.909 0.00 0.00 0.00 1.82
669 10925 2.794350 CCTGCGACACACCAAAATTTTC 59.206 45.455 0.00 0.00 0.00 2.29
670 10926 2.455032 TGCGACACACCAAAATTTTCG 58.545 42.857 0.00 1.12 0.00 3.46
671 10927 1.189227 GCGACACACCAAAATTTTCGC 59.811 47.619 13.45 13.45 42.93 4.70
672 10928 1.784283 CGACACACCAAAATTTTCGCC 59.216 47.619 0.00 0.00 0.00 5.54
673 10929 2.796383 CGACACACCAAAATTTTCGCCA 60.796 45.455 0.00 0.00 0.00 5.69
674 10930 2.538037 GACACACCAAAATTTTCGCCAC 59.462 45.455 0.00 0.00 0.00 5.01
675 10931 1.520590 CACACCAAAATTTTCGCCACG 59.479 47.619 0.00 0.00 0.00 4.94
676 10932 1.135867 CACCAAAATTTTCGCCACGG 58.864 50.000 0.00 0.84 0.00 4.94
677 10933 1.033574 ACCAAAATTTTCGCCACGGA 58.966 45.000 0.00 0.00 0.00 4.69
678 10934 1.269361 ACCAAAATTTTCGCCACGGAC 60.269 47.619 0.00 0.00 0.00 4.79
679 10935 1.414378 CAAAATTTTCGCCACGGACC 58.586 50.000 0.00 0.00 0.00 4.46
680 10936 0.315886 AAAATTTTCGCCACGGACCC 59.684 50.000 0.00 0.00 0.00 4.46
681 10937 1.529152 AAATTTTCGCCACGGACCCC 61.529 55.000 0.00 0.00 0.00 4.95
682 10938 3.931190 ATTTTCGCCACGGACCCCC 62.931 63.158 0.00 0.00 0.00 5.40
696 10952 2.203070 CCCCCGAAGATCCGCAAG 60.203 66.667 0.00 0.00 0.00 4.01
697 10953 2.731571 CCCCCGAAGATCCGCAAGA 61.732 63.158 0.00 0.00 43.02 3.02
698 10954 1.220749 CCCCGAAGATCCGCAAGAA 59.779 57.895 0.00 0.00 43.02 2.52
699 10955 0.392461 CCCCGAAGATCCGCAAGAAA 60.392 55.000 0.00 0.00 43.02 2.52
700 10956 1.448985 CCCGAAGATCCGCAAGAAAA 58.551 50.000 0.00 0.00 43.02 2.29
701 10957 1.810151 CCCGAAGATCCGCAAGAAAAA 59.190 47.619 0.00 0.00 43.02 1.94
814 11076 2.813908 GTCGGATGTCACGCCCAC 60.814 66.667 0.00 0.00 0.00 4.61
818 11080 1.440060 GGATGTCACGCCCACGATA 59.560 57.895 0.00 0.00 43.93 2.92
883 11145 3.194005 TCGAGAGCTTTTCTGTTTGGT 57.806 42.857 0.00 0.00 35.87 3.67
912 11174 2.158740 TCAATGAAACACCTTCCCGTCA 60.159 45.455 0.00 0.00 32.53 4.35
950 11212 0.249489 GTACCTCGCCTGATCGCATT 60.249 55.000 0.00 0.00 0.00 3.56
1093 11361 5.553123 TGCATCTTCTTCATTTTGGCAAAT 58.447 33.333 14.29 1.35 32.36 2.32
1158 11487 1.632948 GCTAACGGCCTGTTTCGTCC 61.633 60.000 16.22 1.05 42.09 4.79
1391 11736 2.631428 CGTGGGTGTTGAACTGCG 59.369 61.111 0.00 0.00 0.00 5.18
1496 11862 3.165160 AACCGAGCAAGAGCACCGT 62.165 57.895 0.00 0.00 45.49 4.83
1800 12361 2.813908 GGCATCCTCGCGACGTTT 60.814 61.111 3.71 0.00 0.00 3.60
2431 13001 2.029844 GGTCACCAGAGCAGCGTTC 61.030 63.158 0.00 0.00 41.81 3.95
2513 13084 3.315191 TCAACTGCCTACAAAAACTCTGC 59.685 43.478 0.00 0.00 0.00 4.26
2560 13131 4.806056 GCGAATTACTTTTGCATGTCAC 57.194 40.909 0.00 0.00 43.26 3.67
2561 13132 4.475944 GCGAATTACTTTTGCATGTCACT 58.524 39.130 0.00 0.00 43.26 3.41
2562 13133 4.321745 GCGAATTACTTTTGCATGTCACTG 59.678 41.667 0.00 0.00 43.26 3.66
2563 13134 4.321745 CGAATTACTTTTGCATGTCACTGC 59.678 41.667 0.00 0.00 42.62 4.40
2650 13221 9.521503 CTGTTCGAATCATATTCTTGTAGAAGA 57.478 33.333 0.00 0.00 37.69 2.87
2663 13234 8.506168 TTCTTGTAGAAGAACAAAGTGACATT 57.494 30.769 10.82 0.00 42.23 2.71
2664 13235 9.607988 TTCTTGTAGAAGAACAAAGTGACATTA 57.392 29.630 10.82 0.00 42.23 1.90
2665 13236 9.778741 TCTTGTAGAAGAACAAAGTGACATTAT 57.221 29.630 0.00 0.00 38.81 1.28
2666 13237 9.817365 CTTGTAGAAGAACAAAGTGACATTATG 57.183 33.333 0.00 0.00 38.81 1.90
2667 13238 8.902540 TGTAGAAGAACAAAGTGACATTATGT 57.097 30.769 0.00 0.00 0.00 2.29
2668 13239 9.990360 TGTAGAAGAACAAAGTGACATTATGTA 57.010 29.630 0.00 0.00 0.00 2.29
2671 13242 9.778741 AGAAGAACAAAGTGACATTATGTAGAA 57.221 29.630 0.00 0.00 0.00 2.10
2673 13244 9.778741 AAGAACAAAGTGACATTATGTAGAAGA 57.221 29.630 0.00 0.00 0.00 2.87
2674 13245 9.778741 AGAACAAAGTGACATTATGTAGAAGAA 57.221 29.630 0.00 0.00 0.00 2.52
2677 13248 9.337396 ACAAAGTGACATTATGTAGAAGAAACA 57.663 29.630 0.00 0.00 0.00 2.83
2799 13450 4.573201 CAGTTGGAAGGAAAAACGACACTA 59.427 41.667 0.00 0.00 0.00 2.74
2816 13467 8.658499 ACGACACTATAAAAGAAACAGAAAGT 57.342 30.769 0.00 0.00 0.00 2.66
2854 13505 8.527810 AGTTTTGAAATTAGGTCAAGAAACACA 58.472 29.630 7.91 0.00 36.41 3.72
2936 13587 5.220931 GCCACTCGCAGATTAGAATTTCATT 60.221 40.000 0.00 0.00 37.47 2.57
2956 13607 7.260387 TCATTGTCATTACCCCTTAACACTA 57.740 36.000 0.00 0.00 0.00 2.74
3071 13723 6.036844 GCGGAACTACATTTACTAGGGAAAAG 59.963 42.308 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.113414 CCCTAGAATGGAGGAGGAGGAT 59.887 54.545 0.00 0.00 35.99 3.24
17 18 4.713792 AATGCTAACCCTAGAATGGAGG 57.286 45.455 0.00 0.00 0.00 4.30
19 20 6.073447 TCAAAATGCTAACCCTAGAATGGA 57.927 37.500 0.00 0.00 0.00 3.41
25 26 6.291377 TGAGCTATCAAAATGCTAACCCTAG 58.709 40.000 0.00 0.00 37.16 3.02
26 27 6.247229 TGAGCTATCAAAATGCTAACCCTA 57.753 37.500 0.00 0.00 37.16 3.53
27 28 5.116084 TGAGCTATCAAAATGCTAACCCT 57.884 39.130 0.00 0.00 37.16 4.34
30 31 6.753279 TGCAAATGAGCTATCAAAATGCTAAC 59.247 34.615 11.75 0.00 40.32 2.34
31 32 6.865411 TGCAAATGAGCTATCAAAATGCTAA 58.135 32.000 11.75 0.00 40.32 3.09
32 33 6.453926 TGCAAATGAGCTATCAAAATGCTA 57.546 33.333 11.75 1.27 40.32 3.49
33 34 5.333299 TGCAAATGAGCTATCAAAATGCT 57.667 34.783 11.75 0.00 40.32 3.79
34 35 5.522460 ACATGCAAATGAGCTATCAAAATGC 59.478 36.000 0.00 0.00 39.39 3.56
35 36 6.754675 TCACATGCAAATGAGCTATCAAAATG 59.245 34.615 0.00 0.00 39.39 2.32
38 39 5.648960 TCTCACATGCAAATGAGCTATCAAA 59.351 36.000 20.51 4.42 41.82 2.69
39 40 5.187687 TCTCACATGCAAATGAGCTATCAA 58.812 37.500 20.51 5.00 41.82 2.57
40 41 4.773013 TCTCACATGCAAATGAGCTATCA 58.227 39.130 20.51 5.57 41.82 2.15
54 55 3.629398 GGGTAAGGAGCAAATCTCACATG 59.371 47.826 0.00 0.00 43.70 3.21
62 63 2.175715 GAGATGGGGGTAAGGAGCAAAT 59.824 50.000 0.00 0.00 0.00 2.32
69 70 1.771255 CAAGAGGAGATGGGGGTAAGG 59.229 57.143 0.00 0.00 0.00 2.69
96 97 3.054213 TCCAATGGAGTGCATCAATCTCA 60.054 43.478 0.00 0.00 0.00 3.27
118 6951 2.118403 TCCAAAGGAGACCTTGGACT 57.882 50.000 6.50 0.00 43.92 3.85
126 6959 8.152086 CCTATGGGATCTTCTCCAAAGGAGAC 62.152 50.000 14.99 4.32 45.98 3.36
127 6960 6.170183 CCTATGGGATCTTCTCCAAAGGAGA 61.170 48.000 11.57 11.57 46.98 3.71
207 7040 7.571025 GGTAACTAGTTCATCCCAATCCTTAA 58.429 38.462 12.39 0.00 0.00 1.85
208 7041 7.133133 GGTAACTAGTTCATCCCAATCCTTA 57.867 40.000 12.39 0.00 0.00 2.69
242 7075 7.616313 ACAAAGGTTTAAATCCAACACAAGAA 58.384 30.769 0.00 0.00 0.00 2.52
258 7091 6.388619 ACACATAGAGGGATACAAAGGTTT 57.611 37.500 0.00 0.00 39.74 3.27
259 7092 7.127339 ACATACACATAGAGGGATACAAAGGTT 59.873 37.037 0.00 0.00 39.74 3.50
276 7109 7.720957 ACACATATGCTAAATCCACATACACAT 59.279 33.333 1.58 0.00 0.00 3.21
306 7139 5.762179 AACACTCCAATAGACAAGATCCA 57.238 39.130 0.00 0.00 0.00 3.41
308 7141 6.670077 GGAAACACTCCAATAGACAAGATC 57.330 41.667 0.00 0.00 44.67 2.75
332 7165 7.484641 CGATGAACACAAGAAAAACAAAAGAGA 59.515 33.333 0.00 0.00 0.00 3.10
333 7166 7.273381 ACGATGAACACAAGAAAAACAAAAGAG 59.727 33.333 0.00 0.00 0.00 2.85
335 7168 7.276953 ACGATGAACACAAGAAAAACAAAAG 57.723 32.000 0.00 0.00 0.00 2.27
337 7170 7.644986 AAACGATGAACACAAGAAAAACAAA 57.355 28.000 0.00 0.00 0.00 2.83
342 7175 6.467682 CGAAGAAAACGATGAACACAAGAAAA 59.532 34.615 0.00 0.00 0.00 2.29
370 10616 1.879575 TCACGAAATGGAGGGGATCT 58.120 50.000 0.00 0.00 0.00 2.75
371 10617 2.710096 TTCACGAAATGGAGGGGATC 57.290 50.000 0.00 0.00 0.00 3.36
372 10618 2.576191 TCTTTCACGAAATGGAGGGGAT 59.424 45.455 0.00 0.00 0.00 3.85
374 10620 2.489938 TCTTTCACGAAATGGAGGGG 57.510 50.000 0.00 0.00 0.00 4.79
376 10622 2.609459 CCGATCTTTCACGAAATGGAGG 59.391 50.000 0.00 0.00 0.00 4.30
377 10623 2.030946 GCCGATCTTTCACGAAATGGAG 59.969 50.000 0.00 0.00 0.00 3.86
378 10624 2.006888 GCCGATCTTTCACGAAATGGA 58.993 47.619 0.00 0.00 0.00 3.41
379 10625 1.064060 GGCCGATCTTTCACGAAATGG 59.936 52.381 0.00 0.00 0.00 3.16
380 10626 1.064060 GGGCCGATCTTTCACGAAATG 59.936 52.381 0.00 0.00 0.00 2.32
381 10627 1.379527 GGGCCGATCTTTCACGAAAT 58.620 50.000 0.00 0.00 0.00 2.17
382 10628 0.675522 GGGGCCGATCTTTCACGAAA 60.676 55.000 0.00 0.00 0.00 3.46
383 10629 1.078708 GGGGCCGATCTTTCACGAA 60.079 57.895 0.00 0.00 0.00 3.85
386 10642 0.106894 CCTAGGGGCCGATCTTTCAC 59.893 60.000 0.00 0.00 0.00 3.18
407 10663 4.880164 ACCTGAGCTAATGTAGGGTAGAA 58.120 43.478 0.00 0.00 34.60 2.10
410 10666 4.407945 GGAAACCTGAGCTAATGTAGGGTA 59.592 45.833 0.00 0.00 34.60 3.69
428 10684 3.329929 ACGAAGATGTGTAGGGGAAAC 57.670 47.619 0.00 0.00 0.00 2.78
429 10685 4.069304 CAAACGAAGATGTGTAGGGGAAA 58.931 43.478 0.00 0.00 0.00 3.13
430 10686 3.071892 ACAAACGAAGATGTGTAGGGGAA 59.928 43.478 0.00 0.00 31.03 3.97
431 10687 2.635915 ACAAACGAAGATGTGTAGGGGA 59.364 45.455 0.00 0.00 31.03 4.81
432 10688 2.742053 CACAAACGAAGATGTGTAGGGG 59.258 50.000 0.00 0.00 41.32 4.79
433 10689 3.659786 TCACAAACGAAGATGTGTAGGG 58.340 45.455 5.88 0.00 44.45 3.53
434 10690 3.123621 GCTCACAAACGAAGATGTGTAGG 59.876 47.826 5.88 0.67 44.45 3.18
435 10691 3.990469 AGCTCACAAACGAAGATGTGTAG 59.010 43.478 5.88 4.17 44.45 2.74
436 10692 3.740832 CAGCTCACAAACGAAGATGTGTA 59.259 43.478 5.88 0.00 44.45 2.90
437 10693 2.545526 CAGCTCACAAACGAAGATGTGT 59.454 45.455 5.88 0.00 44.45 3.72
438 10694 2.545526 ACAGCTCACAAACGAAGATGTG 59.454 45.455 0.00 0.00 45.07 3.21
439 10695 2.838736 ACAGCTCACAAACGAAGATGT 58.161 42.857 0.00 0.00 0.00 3.06
440 10696 3.548587 CAACAGCTCACAAACGAAGATG 58.451 45.455 0.00 0.00 0.00 2.90
441 10697 2.031682 GCAACAGCTCACAAACGAAGAT 60.032 45.455 0.00 0.00 0.00 2.40
442 10698 1.330521 GCAACAGCTCACAAACGAAGA 59.669 47.619 0.00 0.00 0.00 2.87
443 10699 1.746760 GCAACAGCTCACAAACGAAG 58.253 50.000 0.00 0.00 0.00 3.79
444 10700 0.027455 CGCAACAGCTCACAAACGAA 59.973 50.000 0.00 0.00 0.00 3.85
445 10701 1.641140 CGCAACAGCTCACAAACGA 59.359 52.632 0.00 0.00 0.00 3.85
446 10702 2.005537 GCGCAACAGCTCACAAACG 61.006 57.895 0.30 0.00 0.00 3.60
447 10703 1.356624 AGCGCAACAGCTCACAAAC 59.643 52.632 11.47 0.00 45.67 2.93
448 10704 3.826221 AGCGCAACAGCTCACAAA 58.174 50.000 11.47 0.00 45.67 2.83
455 10711 2.778679 CCGTAGAAGCGCAACAGC 59.221 61.111 11.47 0.00 37.41 4.40
456 10712 1.738099 AGCCGTAGAAGCGCAACAG 60.738 57.895 11.47 0.00 34.64 3.16
457 10713 2.027073 CAGCCGTAGAAGCGCAACA 61.027 57.895 11.47 0.00 34.64 3.33
458 10714 2.740714 CCAGCCGTAGAAGCGCAAC 61.741 63.158 11.47 2.34 34.64 4.17
459 10715 2.434185 CCAGCCGTAGAAGCGCAA 60.434 61.111 11.47 0.00 34.64 4.85
460 10716 4.451150 CCCAGCCGTAGAAGCGCA 62.451 66.667 11.47 0.00 34.64 6.09
461 10717 4.143333 TCCCAGCCGTAGAAGCGC 62.143 66.667 0.00 0.00 34.64 5.92
462 10718 2.105128 CTCCCAGCCGTAGAAGCG 59.895 66.667 0.00 0.00 34.64 4.68
463 10719 1.392710 TAGCTCCCAGCCGTAGAAGC 61.393 60.000 0.00 0.00 43.77 3.86
464 10720 0.386113 GTAGCTCCCAGCCGTAGAAG 59.614 60.000 0.00 0.00 43.77 2.85
465 10721 0.323999 TGTAGCTCCCAGCCGTAGAA 60.324 55.000 0.00 0.00 43.77 2.10
466 10722 0.752009 CTGTAGCTCCCAGCCGTAGA 60.752 60.000 0.00 0.00 43.77 2.59
467 10723 1.736586 CTGTAGCTCCCAGCCGTAG 59.263 63.158 0.00 0.00 43.77 3.51
468 10724 3.935024 CTGTAGCTCCCAGCCGTA 58.065 61.111 0.00 0.00 43.77 4.02
473 10729 0.829333 AGATGTGCTGTAGCTCCCAG 59.171 55.000 8.58 8.58 42.66 4.45
474 10730 0.826715 GAGATGTGCTGTAGCTCCCA 59.173 55.000 5.38 0.32 42.66 4.37
475 10731 0.826715 TGAGATGTGCTGTAGCTCCC 59.173 55.000 5.38 0.00 42.66 4.30
476 10732 2.906691 ATGAGATGTGCTGTAGCTCC 57.093 50.000 5.38 0.00 42.66 4.70
477 10733 3.129871 GGAATGAGATGTGCTGTAGCTC 58.870 50.000 5.38 2.21 42.66 4.09
478 10734 2.158842 GGGAATGAGATGTGCTGTAGCT 60.159 50.000 5.38 0.00 42.66 3.32
479 10735 2.216898 GGGAATGAGATGTGCTGTAGC 58.783 52.381 0.00 0.00 42.50 3.58
480 10736 3.201290 GTGGGAATGAGATGTGCTGTAG 58.799 50.000 0.00 0.00 0.00 2.74
481 10737 2.092968 GGTGGGAATGAGATGTGCTGTA 60.093 50.000 0.00 0.00 0.00 2.74
482 10738 1.340405 GGTGGGAATGAGATGTGCTGT 60.340 52.381 0.00 0.00 0.00 4.40
483 10739 1.340308 TGGTGGGAATGAGATGTGCTG 60.340 52.381 0.00 0.00 0.00 4.41
484 10740 0.994247 TGGTGGGAATGAGATGTGCT 59.006 50.000 0.00 0.00 0.00 4.40
485 10741 1.838112 TTGGTGGGAATGAGATGTGC 58.162 50.000 0.00 0.00 0.00 4.57
486 10742 2.162208 CGTTTGGTGGGAATGAGATGTG 59.838 50.000 0.00 0.00 0.00 3.21
487 10743 2.436417 CGTTTGGTGGGAATGAGATGT 58.564 47.619 0.00 0.00 0.00 3.06
488 10744 1.745087 CCGTTTGGTGGGAATGAGATG 59.255 52.381 0.00 0.00 0.00 2.90
489 10745 2.128771 CCGTTTGGTGGGAATGAGAT 57.871 50.000 0.00 0.00 0.00 2.75
490 10746 3.642938 CCGTTTGGTGGGAATGAGA 57.357 52.632 0.00 0.00 0.00 3.27
498 10754 0.466555 TGAAGAACCCCGTTTGGTGG 60.467 55.000 0.00 0.00 39.05 4.61
499 10755 0.666374 GTGAAGAACCCCGTTTGGTG 59.334 55.000 0.00 0.00 39.05 4.17
500 10756 0.256464 TGTGAAGAACCCCGTTTGGT 59.744 50.000 0.00 0.00 41.55 3.67
501 10757 1.616159 ATGTGAAGAACCCCGTTTGG 58.384 50.000 0.00 0.00 0.00 3.28
502 10758 2.360801 ACAATGTGAAGAACCCCGTTTG 59.639 45.455 0.00 0.00 0.00 2.93
503 10759 2.661718 ACAATGTGAAGAACCCCGTTT 58.338 42.857 0.00 0.00 0.00 3.60
504 10760 2.358322 ACAATGTGAAGAACCCCGTT 57.642 45.000 0.00 0.00 0.00 4.44
505 10761 3.495434 TTACAATGTGAAGAACCCCGT 57.505 42.857 0.00 0.00 0.00 5.28
506 10762 3.818773 AGTTTACAATGTGAAGAACCCCG 59.181 43.478 0.00 0.00 0.00 5.73
507 10763 5.300792 TGAAGTTTACAATGTGAAGAACCCC 59.699 40.000 0.00 0.00 0.00 4.95
508 10764 6.385649 TGAAGTTTACAATGTGAAGAACCC 57.614 37.500 0.00 0.00 0.00 4.11
509 10765 6.797033 CGATGAAGTTTACAATGTGAAGAACC 59.203 38.462 0.00 0.00 0.00 3.62
510 10766 7.352739 ACGATGAAGTTTACAATGTGAAGAAC 58.647 34.615 0.00 0.00 0.00 3.01
511 10767 7.490962 ACGATGAAGTTTACAATGTGAAGAA 57.509 32.000 0.00 0.00 0.00 2.52
512 10768 8.771920 ATACGATGAAGTTTACAATGTGAAGA 57.228 30.769 0.00 0.00 0.00 2.87
513 10769 9.825972 AAATACGATGAAGTTTACAATGTGAAG 57.174 29.630 0.00 0.00 0.00 3.02
515 10771 9.605955 CAAAATACGATGAAGTTTACAATGTGA 57.394 29.630 0.00 0.00 0.00 3.58
516 10772 8.365210 GCAAAATACGATGAAGTTTACAATGTG 58.635 33.333 0.00 0.00 0.00 3.21
517 10773 7.270365 CGCAAAATACGATGAAGTTTACAATGT 59.730 33.333 0.00 0.00 0.00 2.71
518 10774 7.480229 TCGCAAAATACGATGAAGTTTACAATG 59.520 33.333 0.00 0.00 33.96 2.82
519 10775 7.523219 TCGCAAAATACGATGAAGTTTACAAT 58.477 30.769 0.00 0.00 33.96 2.71
520 10776 6.889494 TCGCAAAATACGATGAAGTTTACAA 58.111 32.000 0.00 0.00 33.96 2.41
521 10777 6.469139 TCGCAAAATACGATGAAGTTTACA 57.531 33.333 0.00 0.00 33.96 2.41
522 10778 7.511506 GCATTCGCAAAATACGATGAAGTTTAC 60.512 37.037 0.00 0.00 39.65 2.01
523 10779 6.467682 GCATTCGCAAAATACGATGAAGTTTA 59.532 34.615 0.00 0.00 39.65 2.01
524 10780 5.286082 GCATTCGCAAAATACGATGAAGTTT 59.714 36.000 0.00 0.00 39.65 2.66
525 10781 4.793216 GCATTCGCAAAATACGATGAAGTT 59.207 37.500 0.00 0.00 39.65 2.66
526 10782 4.094887 AGCATTCGCAAAATACGATGAAGT 59.905 37.500 0.00 0.00 42.27 3.01
527 10783 4.591202 AGCATTCGCAAAATACGATGAAG 58.409 39.130 0.00 0.00 42.27 3.02
528 10784 4.614555 AGCATTCGCAAAATACGATGAA 57.385 36.364 0.00 0.00 42.27 2.57
529 10785 4.614555 AAGCATTCGCAAAATACGATGA 57.385 36.364 0.00 0.00 42.27 2.92
530 10786 5.030295 AGAAAGCATTCGCAAAATACGATG 58.970 37.500 0.00 0.00 42.27 3.84
531 10787 5.030295 CAGAAAGCATTCGCAAAATACGAT 58.970 37.500 0.00 0.00 42.27 3.73
532 10788 4.402583 CAGAAAGCATTCGCAAAATACGA 58.597 39.130 0.00 0.00 42.27 3.43
533 10789 3.543494 CCAGAAAGCATTCGCAAAATACG 59.457 43.478 0.00 0.00 42.27 3.06
534 10790 3.859386 CCCAGAAAGCATTCGCAAAATAC 59.141 43.478 0.00 0.00 42.27 1.89
535 10791 3.119173 CCCCAGAAAGCATTCGCAAAATA 60.119 43.478 0.00 0.00 42.27 1.40
536 10792 2.354003 CCCCAGAAAGCATTCGCAAAAT 60.354 45.455 0.00 0.00 42.27 1.82
537 10793 1.000731 CCCCAGAAAGCATTCGCAAAA 59.999 47.619 0.00 0.00 42.27 2.44
538 10794 0.602562 CCCCAGAAAGCATTCGCAAA 59.397 50.000 0.00 0.00 42.27 3.68
539 10795 0.251121 TCCCCAGAAAGCATTCGCAA 60.251 50.000 0.00 0.00 42.27 4.85
540 10796 0.960364 GTCCCCAGAAAGCATTCGCA 60.960 55.000 0.00 0.00 42.27 5.10
541 10797 0.960364 TGTCCCCAGAAAGCATTCGC 60.960 55.000 0.00 0.00 40.63 4.70
542 10798 1.089920 CTGTCCCCAGAAAGCATTCG 58.910 55.000 0.00 0.00 41.50 3.34
548 10804 0.322008 GAGTGGCTGTCCCCAGAAAG 60.322 60.000 0.00 0.00 41.50 2.62
549 10805 1.059584 TGAGTGGCTGTCCCCAGAAA 61.060 55.000 0.00 0.00 41.50 2.52
550 10806 1.461268 TGAGTGGCTGTCCCCAGAA 60.461 57.895 0.00 0.00 41.50 3.02
551 10807 2.204034 TGAGTGGCTGTCCCCAGA 59.796 61.111 0.00 0.00 41.50 3.86
552 10808 1.772819 AAGTGAGTGGCTGTCCCCAG 61.773 60.000 0.00 0.00 41.91 4.45
553 10809 1.352622 AAAGTGAGTGGCTGTCCCCA 61.353 55.000 0.00 0.00 0.00 4.96
554 10810 0.890996 CAAAGTGAGTGGCTGTCCCC 60.891 60.000 0.00 0.00 0.00 4.81
555 10811 0.108585 TCAAAGTGAGTGGCTGTCCC 59.891 55.000 0.00 0.00 0.00 4.46
556 10812 1.517242 CTCAAAGTGAGTGGCTGTCC 58.483 55.000 0.00 0.00 39.58 4.02
566 10822 6.984474 AGAAGTATCGAAACAACTCAAAGTGA 59.016 34.615 0.00 0.00 0.00 3.41
567 10823 7.178712 AGAAGTATCGAAACAACTCAAAGTG 57.821 36.000 0.00 0.00 0.00 3.16
568 10824 7.041984 GGAAGAAGTATCGAAACAACTCAAAGT 60.042 37.037 0.00 0.00 0.00 2.66
569 10825 7.291567 GGAAGAAGTATCGAAACAACTCAAAG 58.708 38.462 0.00 0.00 0.00 2.77
570 10826 6.073980 CGGAAGAAGTATCGAAACAACTCAAA 60.074 38.462 0.00 0.00 0.00 2.69
571 10827 5.404366 CGGAAGAAGTATCGAAACAACTCAA 59.596 40.000 0.00 0.00 0.00 3.02
572 10828 4.921515 CGGAAGAAGTATCGAAACAACTCA 59.078 41.667 0.00 0.00 0.00 3.41
573 10829 4.326548 CCGGAAGAAGTATCGAAACAACTC 59.673 45.833 0.00 0.00 0.00 3.01
574 10830 4.243270 CCGGAAGAAGTATCGAAACAACT 58.757 43.478 0.00 0.00 0.00 3.16
575 10831 3.370061 CCCGGAAGAAGTATCGAAACAAC 59.630 47.826 0.73 0.00 0.00 3.32
576 10832 3.007182 ACCCGGAAGAAGTATCGAAACAA 59.993 43.478 0.73 0.00 0.00 2.83
577 10833 2.564062 ACCCGGAAGAAGTATCGAAACA 59.436 45.455 0.73 0.00 0.00 2.83
578 10834 3.119209 AGACCCGGAAGAAGTATCGAAAC 60.119 47.826 0.73 0.00 0.00 2.78
579 10835 3.094572 AGACCCGGAAGAAGTATCGAAA 58.905 45.455 0.73 0.00 0.00 3.46
580 10836 2.426024 CAGACCCGGAAGAAGTATCGAA 59.574 50.000 0.73 0.00 0.00 3.71
581 10837 2.022195 CAGACCCGGAAGAAGTATCGA 58.978 52.381 0.73 0.00 0.00 3.59
582 10838 1.536284 GCAGACCCGGAAGAAGTATCG 60.536 57.143 0.73 0.00 0.00 2.92
583 10839 1.536284 CGCAGACCCGGAAGAAGTATC 60.536 57.143 0.73 0.00 0.00 2.24
584 10840 0.460311 CGCAGACCCGGAAGAAGTAT 59.540 55.000 0.73 0.00 0.00 2.12
585 10841 0.896940 ACGCAGACCCGGAAGAAGTA 60.897 55.000 0.73 0.00 0.00 2.24
586 10842 1.755393 AACGCAGACCCGGAAGAAGT 61.755 55.000 0.73 0.00 0.00 3.01
587 10843 1.004918 AACGCAGACCCGGAAGAAG 60.005 57.895 0.73 0.00 0.00 2.85
588 10844 1.005394 GAACGCAGACCCGGAAGAA 60.005 57.895 0.73 0.00 0.00 2.52
589 10845 2.154798 CTGAACGCAGACCCGGAAGA 62.155 60.000 0.73 0.00 45.17 2.87
590 10846 1.738099 CTGAACGCAGACCCGGAAG 60.738 63.158 0.73 0.00 45.17 3.46
591 10847 2.204461 TCTGAACGCAGACCCGGAA 61.204 57.895 0.73 0.00 45.88 4.30
592 10848 2.599281 TCTGAACGCAGACCCGGA 60.599 61.111 0.73 0.00 45.88 5.14
599 10855 2.317609 CCCGTTGGTCTGAACGCAG 61.318 63.158 0.00 0.00 45.89 5.18
600 10856 2.280524 CCCGTTGGTCTGAACGCA 60.281 61.111 0.00 0.00 45.89 5.24
601 10857 3.047877 CCCCGTTGGTCTGAACGC 61.048 66.667 0.00 0.00 45.89 4.84
602 10858 1.666872 GTCCCCGTTGGTCTGAACG 60.667 63.158 0.00 0.00 46.62 3.95
603 10859 0.883370 GTGTCCCCGTTGGTCTGAAC 60.883 60.000 0.00 0.00 34.77 3.18
604 10860 1.448497 GTGTCCCCGTTGGTCTGAA 59.552 57.895 0.00 0.00 34.77 3.02
605 10861 2.513259 GGTGTCCCCGTTGGTCTGA 61.513 63.158 0.00 0.00 34.77 3.27
606 10862 2.032071 GGTGTCCCCGTTGGTCTG 59.968 66.667 0.00 0.00 34.77 3.51
615 10871 2.668550 GTTGCAGACGGTGTCCCC 60.669 66.667 0.00 0.00 32.18 4.81
616 10872 2.668550 GGTTGCAGACGGTGTCCC 60.669 66.667 0.00 0.00 32.18 4.46
617 10873 1.227853 AAGGTTGCAGACGGTGTCC 60.228 57.895 0.00 0.00 32.18 4.02
618 10874 1.507141 CCAAGGTTGCAGACGGTGTC 61.507 60.000 0.00 0.00 0.00 3.67
619 10875 1.525995 CCAAGGTTGCAGACGGTGT 60.526 57.895 0.00 0.00 0.00 4.16
620 10876 1.227823 TCCAAGGTTGCAGACGGTG 60.228 57.895 0.00 0.00 0.00 4.94
621 10877 1.071471 CTCCAAGGTTGCAGACGGT 59.929 57.895 0.00 0.00 0.00 4.83
622 10878 1.672356 CCTCCAAGGTTGCAGACGG 60.672 63.158 0.00 0.00 0.00 4.79
623 10879 0.671781 CTCCTCCAAGGTTGCAGACG 60.672 60.000 0.00 0.00 36.53 4.18
624 10880 0.957888 GCTCCTCCAAGGTTGCAGAC 60.958 60.000 8.18 0.00 36.53 3.51
625 10881 1.376466 GCTCCTCCAAGGTTGCAGA 59.624 57.895 8.18 0.00 36.53 4.26
626 10882 1.676967 GGCTCCTCCAAGGTTGCAG 60.677 63.158 12.81 0.00 37.54 4.41
627 10883 2.436109 GGCTCCTCCAAGGTTGCA 59.564 61.111 12.81 0.00 37.54 4.08
628 10884 2.436109 TGGCTCCTCCAAGGTTGC 59.564 61.111 0.00 0.00 43.21 4.17
639 10895 2.109126 GTGTCGCAGGAATGGCTCC 61.109 63.158 0.00 0.00 45.81 4.70
640 10896 1.375908 TGTGTCGCAGGAATGGCTC 60.376 57.895 0.00 0.00 0.00 4.70
641 10897 1.672356 GTGTGTCGCAGGAATGGCT 60.672 57.895 0.00 0.00 0.00 4.75
642 10898 2.690778 GGTGTGTCGCAGGAATGGC 61.691 63.158 0.00 0.00 0.00 4.40
643 10899 0.888736 TTGGTGTGTCGCAGGAATGG 60.889 55.000 0.00 0.00 0.00 3.16
644 10900 0.950836 TTTGGTGTGTCGCAGGAATG 59.049 50.000 0.00 0.00 0.00 2.67
645 10901 1.686355 TTTTGGTGTGTCGCAGGAAT 58.314 45.000 0.00 0.00 0.00 3.01
646 10902 1.686355 ATTTTGGTGTGTCGCAGGAA 58.314 45.000 0.00 0.00 0.00 3.36
647 10903 1.686355 AATTTTGGTGTGTCGCAGGA 58.314 45.000 0.00 0.00 0.00 3.86
648 10904 2.507339 AAATTTTGGTGTGTCGCAGG 57.493 45.000 0.00 0.00 0.00 4.85
649 10905 2.467305 CGAAAATTTTGGTGTGTCGCAG 59.533 45.455 8.47 0.00 0.00 5.18
650 10906 2.455032 CGAAAATTTTGGTGTGTCGCA 58.545 42.857 8.47 0.00 0.00 5.10
651 10907 1.189227 GCGAAAATTTTGGTGTGTCGC 59.811 47.619 8.47 11.49 44.45 5.19
652 10908 1.784283 GGCGAAAATTTTGGTGTGTCG 59.216 47.619 8.47 5.01 0.00 4.35
653 10909 2.538037 GTGGCGAAAATTTTGGTGTGTC 59.462 45.455 8.47 0.00 0.00 3.67
654 10910 2.545731 GTGGCGAAAATTTTGGTGTGT 58.454 42.857 8.47 0.00 0.00 3.72
655 10911 1.520590 CGTGGCGAAAATTTTGGTGTG 59.479 47.619 8.47 0.00 0.00 3.82
656 10912 1.537135 CCGTGGCGAAAATTTTGGTGT 60.537 47.619 8.47 0.00 0.00 4.16
657 10913 1.135867 CCGTGGCGAAAATTTTGGTG 58.864 50.000 8.47 0.00 0.00 4.17
658 10914 1.033574 TCCGTGGCGAAAATTTTGGT 58.966 45.000 8.47 0.00 0.00 3.67
659 10915 1.414378 GTCCGTGGCGAAAATTTTGG 58.586 50.000 8.47 8.45 0.00 3.28
660 10916 1.414378 GGTCCGTGGCGAAAATTTTG 58.586 50.000 8.47 2.31 0.00 2.44
661 10917 0.315886 GGGTCCGTGGCGAAAATTTT 59.684 50.000 2.28 2.28 0.00 1.82
662 10918 1.529152 GGGGTCCGTGGCGAAAATTT 61.529 55.000 0.00 0.00 0.00 1.82
663 10919 1.974875 GGGGTCCGTGGCGAAAATT 60.975 57.895 0.00 0.00 0.00 1.82
664 10920 2.360726 GGGGTCCGTGGCGAAAAT 60.361 61.111 0.00 0.00 0.00 1.82
665 10921 4.646877 GGGGGTCCGTGGCGAAAA 62.647 66.667 0.00 0.00 0.00 2.29
679 10935 2.203070 CTTGCGGATCTTCGGGGG 60.203 66.667 0.00 0.00 0.00 5.40
680 10936 0.392461 TTTCTTGCGGATCTTCGGGG 60.392 55.000 0.00 0.00 0.00 5.73
681 10937 1.448985 TTTTCTTGCGGATCTTCGGG 58.551 50.000 0.00 0.00 0.00 5.14
701 10957 1.588667 CACGCCGTTGCAGCTTTTT 60.589 52.632 0.00 0.00 37.32 1.94
702 10958 2.026014 CACGCCGTTGCAGCTTTT 59.974 55.556 0.00 0.00 37.32 2.27
703 10959 3.964875 CCACGCCGTTGCAGCTTT 61.965 61.111 0.00 0.00 37.32 3.51
704 10960 4.927782 TCCACGCCGTTGCAGCTT 62.928 61.111 0.00 0.00 37.32 3.74
814 11076 2.259618 CGGCACCGGAGAATATTATCG 58.740 52.381 9.46 1.59 35.56 2.92
818 11080 0.814010 GTGCGGCACCGGAGAATATT 60.814 55.000 22.19 0.00 41.08 1.28
883 11145 0.584396 GTGTTTCATTGACGGCGACA 59.416 50.000 16.62 12.05 0.00 4.35
950 11212 5.586877 AGGTTGTAGTACTTGGGAGTGATA 58.413 41.667 0.00 0.00 36.60 2.15
1093 11361 4.764308 TCATGCAAAATGTACTAGGTGCAA 59.236 37.500 15.38 2.25 44.39 4.08
1104 11372 9.309516 GTGATTGATTAATCTCATGCAAAATGT 57.690 29.630 16.24 0.00 42.56 2.71
1299 11628 4.194720 CGGAGGGCGACGAGGAAG 62.195 72.222 0.00 0.00 0.00 3.46
1391 11736 0.807496 GAAGCTGGTGGATTCTGTGC 59.193 55.000 0.00 0.00 37.37 4.57
1399 11765 0.539669 TCTCTCACGAAGCTGGTGGA 60.540 55.000 15.78 11.54 36.09 4.02
1560 11989 2.016604 GCCTTGTATTCATCGGTGGCA 61.017 52.381 0.00 0.00 38.99 4.92
1682 12243 0.106967 GAAGTGGAATGGGAGCCTCC 60.107 60.000 0.73 0.73 35.23 4.30
1786 12347 2.813908 GCCAAACGTCGCGAGGAT 60.814 61.111 32.99 20.42 0.00 3.24
1800 12361 4.492160 GAGTCGGACGCGATGCCA 62.492 66.667 15.93 0.00 0.00 4.92
1866 12427 4.530857 GACTCCCCGGCGATGGTG 62.531 72.222 9.30 12.05 0.00 4.17
2032 12593 3.322466 CACGAAGACAGGCCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
2120 12681 4.838152 CGCCCTCCATGTCCACCG 62.838 72.222 0.00 0.00 0.00 4.94
2339 12900 0.379669 TCGATCTTAGTTCCGGCGAC 59.620 55.000 9.30 0.00 0.00 5.19
2431 13001 5.927030 TGCAGAAGCTGTTCTTTTATTACG 58.073 37.500 0.00 0.00 41.40 3.18
2482 13052 9.040939 GTTTTTGTAGGCAGTTGAATACAAATT 57.959 29.630 16.28 0.00 43.68 1.82
2484 13054 7.777095 AGTTTTTGTAGGCAGTTGAATACAAA 58.223 30.769 13.63 13.63 42.99 2.83
2534 13105 6.256539 TGACATGCAAAAGTAATTCGCAAAAA 59.743 30.769 4.38 0.00 35.98 1.94
2535 13106 5.750547 TGACATGCAAAAGTAATTCGCAAAA 59.249 32.000 4.38 0.00 35.98 2.44
2536 13107 5.174761 GTGACATGCAAAAGTAATTCGCAAA 59.825 36.000 4.38 0.00 35.98 3.68
2537 13108 4.679197 GTGACATGCAAAAGTAATTCGCAA 59.321 37.500 4.38 0.00 35.98 4.85
2538 13109 4.023279 AGTGACATGCAAAAGTAATTCGCA 60.023 37.500 0.00 2.93 36.95 5.10
2539 13110 4.321745 CAGTGACATGCAAAAGTAATTCGC 59.678 41.667 0.00 0.00 0.00 4.70
2540 13111 4.321745 GCAGTGACATGCAAAAGTAATTCG 59.678 41.667 0.00 0.00 45.77 3.34
2541 13112 5.752098 GCAGTGACATGCAAAAGTAATTC 57.248 39.130 0.00 0.00 45.77 2.17
2552 13123 1.335324 GGTTCTGTTGCAGTGACATGC 60.335 52.381 0.00 1.00 46.68 4.06
2553 13124 1.948834 TGGTTCTGTTGCAGTGACATG 59.051 47.619 0.00 0.00 32.61 3.21
2554 13125 1.949525 GTGGTTCTGTTGCAGTGACAT 59.050 47.619 0.00 0.00 32.61 3.06
2555 13126 1.065491 AGTGGTTCTGTTGCAGTGACA 60.065 47.619 0.00 0.00 32.61 3.58
2556 13127 1.668419 AGTGGTTCTGTTGCAGTGAC 58.332 50.000 0.00 0.00 32.61 3.67
2557 13128 2.806745 GCTAGTGGTTCTGTTGCAGTGA 60.807 50.000 0.00 0.00 32.61 3.41
2558 13129 1.532868 GCTAGTGGTTCTGTTGCAGTG 59.467 52.381 0.00 0.00 32.61 3.66
2559 13130 1.140852 TGCTAGTGGTTCTGTTGCAGT 59.859 47.619 0.00 0.00 32.61 4.40
2560 13131 1.882912 TGCTAGTGGTTCTGTTGCAG 58.117 50.000 0.00 0.00 0.00 4.41
2561 13132 2.153645 CATGCTAGTGGTTCTGTTGCA 58.846 47.619 0.00 0.00 34.71 4.08
2562 13133 1.135575 GCATGCTAGTGGTTCTGTTGC 60.136 52.381 11.37 0.00 0.00 4.17
2563 13134 1.470098 GGCATGCTAGTGGTTCTGTTG 59.530 52.381 18.92 0.00 0.00 3.33
2564 13135 1.073763 TGGCATGCTAGTGGTTCTGTT 59.926 47.619 18.92 0.00 0.00 3.16
2593 13164 0.250295 CACTTCAGCGGTCCAGGAAA 60.250 55.000 0.00 0.00 0.00 3.13
2651 13222 9.337396 TGTTTCTTCTACATAATGTCACTTTGT 57.663 29.630 0.00 0.00 0.00 2.83
2681 13252 8.568794 GTTAGCCACTTCTACAAGAAAATTTCT 58.431 33.333 1.80 1.80 43.15 2.52
2682 13253 8.349983 TGTTAGCCACTTCTACAAGAAAATTTC 58.650 33.333 0.00 0.00 33.19 2.17
2683 13254 8.232913 TGTTAGCCACTTCTACAAGAAAATTT 57.767 30.769 0.00 0.00 33.19 1.82
2684 13255 7.817418 TGTTAGCCACTTCTACAAGAAAATT 57.183 32.000 0.00 0.00 33.19 1.82
2685 13256 7.817418 TTGTTAGCCACTTCTACAAGAAAAT 57.183 32.000 0.00 0.00 33.19 1.82
2686 13257 7.338449 ACTTTGTTAGCCACTTCTACAAGAAAA 59.662 33.333 0.00 0.00 33.19 2.29
2687 13258 6.826741 ACTTTGTTAGCCACTTCTACAAGAAA 59.173 34.615 0.00 0.00 33.19 2.52
2688 13259 6.260050 CACTTTGTTAGCCACTTCTACAAGAA 59.740 38.462 0.00 0.00 33.34 2.52
2689 13260 5.758296 CACTTTGTTAGCCACTTCTACAAGA 59.242 40.000 0.00 0.00 33.34 3.02
2690 13261 5.758296 TCACTTTGTTAGCCACTTCTACAAG 59.242 40.000 0.00 0.00 35.50 3.16
2691 13262 5.526111 GTCACTTTGTTAGCCACTTCTACAA 59.474 40.000 0.00 0.00 0.00 2.41
2692 13263 5.054477 GTCACTTTGTTAGCCACTTCTACA 58.946 41.667 0.00 0.00 0.00 2.74
2693 13264 5.054477 TGTCACTTTGTTAGCCACTTCTAC 58.946 41.667 0.00 0.00 0.00 2.59
2694 13265 5.284861 TGTCACTTTGTTAGCCACTTCTA 57.715 39.130 0.00 0.00 0.00 2.10
2695 13266 4.150897 TGTCACTTTGTTAGCCACTTCT 57.849 40.909 0.00 0.00 0.00 2.85
2696 13267 5.239525 AGAATGTCACTTTGTTAGCCACTTC 59.760 40.000 0.00 0.00 0.00 3.01
2697 13268 5.009010 CAGAATGTCACTTTGTTAGCCACTT 59.991 40.000 0.00 0.00 0.00 3.16
2698 13269 4.516698 CAGAATGTCACTTTGTTAGCCACT 59.483 41.667 0.00 0.00 0.00 4.00
2699 13270 4.787598 CAGAATGTCACTTTGTTAGCCAC 58.212 43.478 0.00 0.00 0.00 5.01
2776 13427 3.377172 AGTGTCGTTTTTCCTTCCAACTG 59.623 43.478 0.00 0.00 0.00 3.16
2777 13428 3.617284 AGTGTCGTTTTTCCTTCCAACT 58.383 40.909 0.00 0.00 0.00 3.16
2936 13587 6.630203 ACATAGTGTTAAGGGGTAATGACA 57.370 37.500 0.00 0.00 0.00 3.58
2956 13607 5.371526 CAAGTCTGCAACCCATATCTACAT 58.628 41.667 0.00 0.00 0.00 2.29
3071 13723 6.611381 TGTTTTTAGTAGATGTTGATGCAGC 58.389 36.000 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.