Multiple sequence alignment - TraesCS7B01G135000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G135000 chr7B 100.000 2600 0 0 1 2600 165097609 165100208 0.000000e+00 4802.0
1 TraesCS7B01G135000 chr7D 93.001 2029 86 25 538 2545 200764593 200766586 0.000000e+00 2909.0
2 TraesCS7B01G135000 chr7D 80.968 310 51 7 1180 1485 578465376 578465681 3.340000e-59 239.0
3 TraesCS7B01G135000 chr7D 88.889 54 5 1 2547 2600 386508023 386507971 6.010000e-07 65.8
4 TraesCS7B01G135000 chr7A 90.924 1796 81 47 602 2383 214301371 214303098 0.000000e+00 2338.0
5 TraesCS7B01G135000 chr7A 79.355 310 56 7 1180 1485 670536908 670537213 7.290000e-51 211.0
6 TraesCS7B01G135000 chr7A 94.231 104 6 0 2473 2576 214303333 214303436 2.680000e-35 159.0
7 TraesCS7B01G135000 chr5D 88.931 524 38 14 1008 1530 369427841 369428345 1.700000e-176 628.0
8 TraesCS7B01G135000 chr5B 88.550 524 40 14 1008 1530 438557155 438557659 3.680000e-173 617.0
9 TraesCS7B01G135000 chr5B 95.677 347 13 2 12 358 513958790 513958446 8.130000e-155 556.0
10 TraesCS7B01G135000 chr5B 95.677 347 8 3 12 358 26490611 26490272 3.780000e-153 551.0
11 TraesCS7B01G135000 chr5A 88.550 524 40 14 1008 1530 471946517 471947021 3.680000e-173 617.0
12 TraesCS7B01G135000 chr3A 96.532 346 7 1 13 358 658853585 658853925 3.750000e-158 568.0
13 TraesCS7B01G135000 chr3A 92.857 42 3 0 2559 2600 199136733 199136774 7.770000e-06 62.1
14 TraesCS7B01G135000 chr6B 95.977 348 12 1 13 358 22067314 22066967 4.860000e-157 564.0
15 TraesCS7B01G135000 chr6B 95.238 357 7 6 12 358 17749648 17750004 8.130000e-155 556.0
16 TraesCS7B01G135000 chr6B 88.235 51 3 3 2553 2600 474435777 474435727 1.000000e-04 58.4
17 TraesCS7B01G135000 chr1B 95.640 344 13 1 13 356 392759646 392759987 3.780000e-153 551.0
18 TraesCS7B01G135000 chr1B 94.556 349 18 1 11 358 600019959 600019611 2.940000e-149 538.0
19 TraesCS7B01G135000 chr4B 95.170 352 10 6 12 358 670349715 670350064 1.360000e-152 549.0
20 TraesCS7B01G135000 chr1D 94.524 347 18 1 12 358 271294059 271293714 3.810000e-148 534.0
21 TraesCS7B01G135000 chr1D 95.000 40 2 0 2561 2600 491636843 491636804 2.160000e-06 63.9
22 TraesCS7B01G135000 chr4A 83.284 341 42 12 1181 1509 83572035 83571698 1.510000e-77 300.0
23 TraesCS7B01G135000 chr4A 97.297 37 1 0 2564 2600 738877601 738877565 2.160000e-06 63.9
24 TraesCS7B01G135000 chr3D 80.319 188 29 7 1181 1364 55156659 55156842 4.510000e-28 135.0
25 TraesCS7B01G135000 chr3B 95.122 41 1 1 2561 2600 21406338 21406298 2.160000e-06 63.9
26 TraesCS7B01G135000 chr3B 90.000 50 4 1 2552 2600 101315059 101315010 2.160000e-06 63.9
27 TraesCS7B01G135000 chr1A 95.000 40 2 0 2561 2600 589793157 589793196 2.160000e-06 63.9
28 TraesCS7B01G135000 chr2B 97.222 36 1 0 2565 2600 745781720 745781685 7.770000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G135000 chr7B 165097609 165100208 2599 False 4802.0 4802 100.0000 1 2600 1 chr7B.!!$F1 2599
1 TraesCS7B01G135000 chr7D 200764593 200766586 1993 False 2909.0 2909 93.0010 538 2545 1 chr7D.!!$F1 2007
2 TraesCS7B01G135000 chr7A 214301371 214303436 2065 False 1248.5 2338 92.5775 602 2576 2 chr7A.!!$F2 1974
3 TraesCS7B01G135000 chr5D 369427841 369428345 504 False 628.0 628 88.9310 1008 1530 1 chr5D.!!$F1 522
4 TraesCS7B01G135000 chr5B 438557155 438557659 504 False 617.0 617 88.5500 1008 1530 1 chr5B.!!$F1 522
5 TraesCS7B01G135000 chr5A 471946517 471947021 504 False 617.0 617 88.5500 1008 1530 1 chr5A.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.102481 TTTAGACATCGGCTCGGCTC 59.898 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1762 2.160721 ACCTAGCCGGATTCTTCTCA 57.839 50.0 5.05 0.0 36.31 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.596836 AAAATGTTTCAGCTTCCAAGTGA 57.403 34.783 0.00 0.00 0.00 3.41
35 36 4.574599 AATGTTTCAGCTTCCAAGTGAC 57.425 40.909 0.00 0.00 0.00 3.67
36 37 2.297701 TGTTTCAGCTTCCAAGTGACC 58.702 47.619 0.00 0.00 0.00 4.02
37 38 2.092429 TGTTTCAGCTTCCAAGTGACCT 60.092 45.455 0.00 0.00 0.00 3.85
38 39 2.952310 GTTTCAGCTTCCAAGTGACCTT 59.048 45.455 0.00 0.00 0.00 3.50
39 40 3.297134 TTCAGCTTCCAAGTGACCTTT 57.703 42.857 0.00 0.00 0.00 3.11
40 41 2.851195 TCAGCTTCCAAGTGACCTTTC 58.149 47.619 0.00 0.00 0.00 2.62
41 42 1.532868 CAGCTTCCAAGTGACCTTTCG 59.467 52.381 0.00 0.00 0.00 3.46
42 43 0.238553 GCTTCCAAGTGACCTTTCGC 59.761 55.000 0.00 0.00 0.00 4.70
43 44 1.593196 CTTCCAAGTGACCTTTCGCA 58.407 50.000 0.00 0.00 34.39 5.10
44 45 2.154462 CTTCCAAGTGACCTTTCGCAT 58.846 47.619 0.00 0.00 34.39 4.73
45 46 3.334691 CTTCCAAGTGACCTTTCGCATA 58.665 45.455 0.00 0.00 34.39 3.14
46 47 2.695359 TCCAAGTGACCTTTCGCATAC 58.305 47.619 0.00 0.00 34.39 2.39
47 48 1.737793 CCAAGTGACCTTTCGCATACC 59.262 52.381 0.00 0.00 34.39 2.73
48 49 1.737793 CAAGTGACCTTTCGCATACCC 59.262 52.381 0.00 0.00 34.39 3.69
49 50 0.981183 AGTGACCTTTCGCATACCCA 59.019 50.000 0.00 0.00 34.39 4.51
50 51 1.559682 AGTGACCTTTCGCATACCCAT 59.440 47.619 0.00 0.00 34.39 4.00
51 52 2.769663 AGTGACCTTTCGCATACCCATA 59.230 45.455 0.00 0.00 34.39 2.74
52 53 3.131396 GTGACCTTTCGCATACCCATAG 58.869 50.000 0.00 0.00 32.00 2.23
53 54 2.769663 TGACCTTTCGCATACCCATAGT 59.230 45.455 0.00 0.00 0.00 2.12
54 55 3.131396 GACCTTTCGCATACCCATAGTG 58.869 50.000 0.00 0.00 0.00 2.74
55 56 1.873591 CCTTTCGCATACCCATAGTGC 59.126 52.381 0.00 0.00 35.59 4.40
59 60 2.616969 GCATACCCATAGTGCGTGG 58.383 57.895 0.00 0.00 36.47 4.94
60 61 1.507141 GCATACCCATAGTGCGTGGC 61.507 60.000 0.00 0.00 35.35 5.01
61 62 0.179059 CATACCCATAGTGCGTGGCA 60.179 55.000 0.00 0.00 35.35 4.92
62 63 0.544223 ATACCCATAGTGCGTGGCAA 59.456 50.000 0.00 0.00 41.47 4.52
63 64 0.325272 TACCCATAGTGCGTGGCAAA 59.675 50.000 0.00 0.00 41.47 3.68
64 65 0.538516 ACCCATAGTGCGTGGCAAAA 60.539 50.000 0.00 0.00 41.47 2.44
65 66 0.600557 CCCATAGTGCGTGGCAAAAA 59.399 50.000 0.00 0.00 41.47 1.94
66 67 1.204467 CCCATAGTGCGTGGCAAAAAT 59.796 47.619 0.00 0.00 41.47 1.82
67 68 2.353605 CCCATAGTGCGTGGCAAAAATT 60.354 45.455 0.00 0.00 41.47 1.82
68 69 3.324993 CCATAGTGCGTGGCAAAAATTT 58.675 40.909 0.00 0.00 41.47 1.82
69 70 4.489810 CCATAGTGCGTGGCAAAAATTTA 58.510 39.130 0.00 0.00 41.47 1.40
70 71 4.562394 CCATAGTGCGTGGCAAAAATTTAG 59.438 41.667 0.00 0.00 41.47 1.85
71 72 5.398169 CATAGTGCGTGGCAAAAATTTAGA 58.602 37.500 0.00 0.00 41.47 2.10
72 73 3.638484 AGTGCGTGGCAAAAATTTAGAC 58.362 40.909 0.00 0.00 41.47 2.59
73 74 3.067461 AGTGCGTGGCAAAAATTTAGACA 59.933 39.130 0.00 0.00 41.47 3.41
74 75 3.987220 GTGCGTGGCAAAAATTTAGACAT 59.013 39.130 2.78 0.00 41.47 3.06
75 76 4.089923 GTGCGTGGCAAAAATTTAGACATC 59.910 41.667 2.78 0.39 41.47 3.06
76 77 3.300590 GCGTGGCAAAAATTTAGACATCG 59.699 43.478 2.78 8.77 0.00 3.84
77 78 3.851403 CGTGGCAAAAATTTAGACATCGG 59.149 43.478 2.78 0.00 0.00 4.18
78 79 3.612423 GTGGCAAAAATTTAGACATCGGC 59.388 43.478 2.78 0.00 0.00 5.54
79 80 3.509575 TGGCAAAAATTTAGACATCGGCT 59.490 39.130 0.00 0.00 0.00 5.52
80 81 4.105486 GGCAAAAATTTAGACATCGGCTC 58.895 43.478 0.00 0.00 0.00 4.70
81 82 3.786048 GCAAAAATTTAGACATCGGCTCG 59.214 43.478 0.00 0.00 0.00 5.03
82 83 4.342772 CAAAAATTTAGACATCGGCTCGG 58.657 43.478 0.00 0.00 0.00 4.63
83 84 1.583054 AATTTAGACATCGGCTCGGC 58.417 50.000 0.00 0.00 0.00 5.54
84 85 0.753262 ATTTAGACATCGGCTCGGCT 59.247 50.000 0.00 0.00 0.00 5.52
85 86 0.102481 TTTAGACATCGGCTCGGCTC 59.898 55.000 0.00 0.00 0.00 4.70
86 87 1.035385 TTAGACATCGGCTCGGCTCA 61.035 55.000 0.00 0.00 0.00 4.26
87 88 0.823769 TAGACATCGGCTCGGCTCAT 60.824 55.000 0.00 0.00 0.00 2.90
88 89 1.227380 GACATCGGCTCGGCTCATT 60.227 57.895 0.00 0.00 0.00 2.57
89 90 1.218230 GACATCGGCTCGGCTCATTC 61.218 60.000 0.00 0.00 0.00 2.67
90 91 1.958205 CATCGGCTCGGCTCATTCC 60.958 63.158 0.00 0.00 0.00 3.01
91 92 3.170490 ATCGGCTCGGCTCATTCCC 62.170 63.158 0.00 0.00 0.00 3.97
94 95 4.838152 GCTCGGCTCATTCCCGCA 62.838 66.667 0.00 0.00 45.19 5.69
95 96 2.125147 CTCGGCTCATTCCCGCAA 60.125 61.111 0.00 0.00 45.19 4.85
96 97 2.435938 TCGGCTCATTCCCGCAAC 60.436 61.111 0.00 0.00 45.19 4.17
97 98 3.508840 CGGCTCATTCCCGCAACC 61.509 66.667 0.00 0.00 39.22 3.77
98 99 3.140814 GGCTCATTCCCGCAACCC 61.141 66.667 0.00 0.00 0.00 4.11
99 100 3.508840 GCTCATTCCCGCAACCCG 61.509 66.667 0.00 0.00 0.00 5.28
100 101 3.508840 CTCATTCCCGCAACCCGC 61.509 66.667 0.00 0.00 35.03 6.13
157 158 4.266070 GAGGAGCGCGCGTGGATA 62.266 66.667 32.35 0.00 0.00 2.59
158 159 3.559657 GAGGAGCGCGCGTGGATAT 62.560 63.158 32.35 12.83 0.00 1.63
159 160 3.106407 GGAGCGCGCGTGGATATC 61.106 66.667 32.35 15.71 0.00 1.63
160 161 3.106407 GAGCGCGCGTGGATATCC 61.106 66.667 32.35 15.39 0.00 2.59
161 162 4.664677 AGCGCGCGTGGATATCCC 62.665 66.667 32.35 11.09 34.29 3.85
162 163 4.664677 GCGCGCGTGGATATCCCT 62.665 66.667 32.35 0.00 35.38 4.20
163 164 2.430921 CGCGCGTGGATATCCCTC 60.431 66.667 24.19 11.05 35.38 4.30
164 165 2.920645 CGCGCGTGGATATCCCTCT 61.921 63.158 24.19 0.00 35.38 3.69
165 166 1.367840 GCGCGTGGATATCCCTCTT 59.632 57.895 19.34 0.00 35.38 2.85
166 167 0.946221 GCGCGTGGATATCCCTCTTG 60.946 60.000 19.34 6.53 35.38 3.02
167 168 0.389391 CGCGTGGATATCCCTCTTGT 59.611 55.000 19.34 0.00 35.38 3.16
168 169 1.202533 CGCGTGGATATCCCTCTTGTT 60.203 52.381 19.34 0.00 35.38 2.83
169 170 2.484889 GCGTGGATATCCCTCTTGTTC 58.515 52.381 19.34 0.00 35.38 3.18
170 171 2.103263 GCGTGGATATCCCTCTTGTTCT 59.897 50.000 19.34 0.00 35.38 3.01
171 172 3.800604 GCGTGGATATCCCTCTTGTTCTC 60.801 52.174 19.34 0.00 35.38 2.87
172 173 3.384789 CGTGGATATCCCTCTTGTTCTCA 59.615 47.826 19.34 0.00 35.38 3.27
173 174 4.039730 CGTGGATATCCCTCTTGTTCTCAT 59.960 45.833 19.34 0.00 35.38 2.90
174 175 5.303971 GTGGATATCCCTCTTGTTCTCATG 58.696 45.833 19.34 0.00 35.38 3.07
175 176 4.202398 TGGATATCCCTCTTGTTCTCATGC 60.202 45.833 19.34 0.00 35.38 4.06
176 177 4.041444 GGATATCCCTCTTGTTCTCATGCT 59.959 45.833 11.02 0.00 0.00 3.79
177 178 3.557228 ATCCCTCTTGTTCTCATGCTC 57.443 47.619 0.00 0.00 0.00 4.26
178 179 2.259917 TCCCTCTTGTTCTCATGCTCA 58.740 47.619 0.00 0.00 0.00 4.26
179 180 2.842496 TCCCTCTTGTTCTCATGCTCAT 59.158 45.455 0.00 0.00 0.00 2.90
180 181 4.033009 TCCCTCTTGTTCTCATGCTCATA 58.967 43.478 0.00 0.00 0.00 2.15
181 182 4.125703 CCCTCTTGTTCTCATGCTCATAC 58.874 47.826 0.00 0.00 0.00 2.39
182 183 4.383444 CCCTCTTGTTCTCATGCTCATACA 60.383 45.833 0.00 0.00 0.00 2.29
183 184 5.181009 CCTCTTGTTCTCATGCTCATACAA 58.819 41.667 0.00 0.00 0.00 2.41
184 185 5.293814 CCTCTTGTTCTCATGCTCATACAAG 59.706 44.000 13.21 13.21 42.18 3.16
185 186 5.798132 TCTTGTTCTCATGCTCATACAAGT 58.202 37.500 16.50 0.00 41.76 3.16
186 187 5.640783 TCTTGTTCTCATGCTCATACAAGTG 59.359 40.000 16.50 2.07 41.76 3.16
187 188 4.256110 TGTTCTCATGCTCATACAAGTGG 58.744 43.478 0.00 0.00 0.00 4.00
188 189 3.548745 TCTCATGCTCATACAAGTGGG 57.451 47.619 0.00 0.00 0.00 4.61
189 190 2.171237 TCTCATGCTCATACAAGTGGGG 59.829 50.000 0.00 0.00 0.00 4.96
190 191 2.171237 CTCATGCTCATACAAGTGGGGA 59.829 50.000 0.00 0.00 0.00 4.81
191 192 2.575735 TCATGCTCATACAAGTGGGGAA 59.424 45.455 0.00 0.00 0.00 3.97
192 193 2.787473 TGCTCATACAAGTGGGGAAG 57.213 50.000 0.00 0.00 0.00 3.46
193 194 1.281867 TGCTCATACAAGTGGGGAAGG 59.718 52.381 0.00 0.00 0.00 3.46
194 195 1.559682 GCTCATACAAGTGGGGAAGGA 59.440 52.381 0.00 0.00 0.00 3.36
195 196 2.420687 GCTCATACAAGTGGGGAAGGAG 60.421 54.545 0.00 0.00 0.00 3.69
196 197 1.559682 TCATACAAGTGGGGAAGGAGC 59.440 52.381 0.00 0.00 0.00 4.70
197 198 0.919710 ATACAAGTGGGGAAGGAGCC 59.080 55.000 0.00 0.00 0.00 4.70
198 199 0.178873 TACAAGTGGGGAAGGAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
199 200 1.301293 CAAGTGGGGAAGGAGCCTC 59.699 63.158 0.00 0.00 0.00 4.70
200 201 1.925972 AAGTGGGGAAGGAGCCTCC 60.926 63.158 1.26 1.26 36.58 4.30
201 202 3.412408 GTGGGGAAGGAGCCTCCC 61.412 72.222 7.26 12.85 42.84 4.30
202 203 3.626596 TGGGGAAGGAGCCTCCCT 61.627 66.667 7.26 0.00 43.11 4.20
204 205 1.004361 GGGGAAGGAGCCTCCCTTA 59.996 63.158 7.26 0.00 45.97 2.69
205 206 0.402126 GGGGAAGGAGCCTCCCTTAT 60.402 60.000 7.26 0.00 45.97 1.73
206 207 1.132495 GGGGAAGGAGCCTCCCTTATA 60.132 57.143 7.26 0.00 45.97 0.98
207 208 2.699281 GGGGAAGGAGCCTCCCTTATAA 60.699 54.545 7.26 0.00 45.97 0.98
208 209 3.053826 GGGAAGGAGCCTCCCTTATAAA 58.946 50.000 7.26 0.00 45.97 1.40
209 210 3.073209 GGGAAGGAGCCTCCCTTATAAAG 59.927 52.174 7.26 0.00 45.97 1.85
210 211 3.974642 GGAAGGAGCCTCCCTTATAAAGA 59.025 47.826 7.26 0.00 45.97 2.52
211 212 4.041075 GGAAGGAGCCTCCCTTATAAAGAG 59.959 50.000 7.26 5.54 45.97 2.85
212 213 4.041075 GAAGGAGCCTCCCTTATAAAGAGG 59.959 50.000 20.08 20.08 45.97 3.69
218 219 5.037383 CCTCCCTTATAAAGAGGTCCAAC 57.963 47.826 17.61 0.00 41.96 3.77
219 220 4.722279 CCTCCCTTATAAAGAGGTCCAACT 59.278 45.833 17.61 0.00 41.96 3.16
220 221 5.163290 CCTCCCTTATAAAGAGGTCCAACTC 60.163 48.000 17.61 0.00 41.96 3.01
221 222 4.720273 TCCCTTATAAAGAGGTCCAACTCC 59.280 45.833 0.00 0.00 38.26 3.85
222 223 4.141459 CCCTTATAAAGAGGTCCAACTCCC 60.141 50.000 0.00 0.00 38.26 4.30
223 224 4.722279 CCTTATAAAGAGGTCCAACTCCCT 59.278 45.833 0.00 0.00 38.26 4.20
224 225 5.163290 CCTTATAAAGAGGTCCAACTCCCTC 60.163 48.000 0.00 0.00 46.34 4.30
229 230 3.613494 GAGGTCCAACTCCCTCTAAAC 57.387 52.381 0.00 0.00 43.29 2.01
230 231 3.174779 GAGGTCCAACTCCCTCTAAACT 58.825 50.000 0.00 0.00 43.29 2.66
231 232 4.351127 GAGGTCCAACTCCCTCTAAACTA 58.649 47.826 0.00 0.00 43.29 2.24
232 233 4.354662 AGGTCCAACTCCCTCTAAACTAG 58.645 47.826 0.00 0.00 0.00 2.57
233 234 3.118702 GGTCCAACTCCCTCTAAACTAGC 60.119 52.174 0.00 0.00 0.00 3.42
234 235 3.514309 GTCCAACTCCCTCTAAACTAGCA 59.486 47.826 0.00 0.00 0.00 3.49
235 236 4.020485 GTCCAACTCCCTCTAAACTAGCAA 60.020 45.833 0.00 0.00 0.00 3.91
236 237 4.783227 TCCAACTCCCTCTAAACTAGCAAT 59.217 41.667 0.00 0.00 0.00 3.56
237 238 4.878397 CCAACTCCCTCTAAACTAGCAATG 59.122 45.833 0.00 0.00 0.00 2.82
238 239 5.491982 CAACTCCCTCTAAACTAGCAATGT 58.508 41.667 0.00 0.00 0.00 2.71
239 240 5.091261 ACTCCCTCTAAACTAGCAATGTG 57.909 43.478 0.00 0.00 0.00 3.21
240 241 4.080863 ACTCCCTCTAAACTAGCAATGTGG 60.081 45.833 0.00 0.00 0.00 4.17
241 242 3.199946 TCCCTCTAAACTAGCAATGTGGG 59.800 47.826 0.00 0.00 0.00 4.61
242 243 3.199946 CCCTCTAAACTAGCAATGTGGGA 59.800 47.826 7.39 0.00 33.14 4.37
243 244 4.192317 CCTCTAAACTAGCAATGTGGGAC 58.808 47.826 0.00 0.00 0.00 4.46
244 245 4.080863 CCTCTAAACTAGCAATGTGGGACT 60.081 45.833 0.00 0.00 0.00 3.85
245 246 5.128827 CCTCTAAACTAGCAATGTGGGACTA 59.871 44.000 0.00 0.00 0.00 2.59
246 247 6.351881 CCTCTAAACTAGCAATGTGGGACTAA 60.352 42.308 0.00 0.00 0.00 2.24
247 248 7.011499 TCTAAACTAGCAATGTGGGACTAAA 57.989 36.000 0.00 0.00 0.00 1.85
248 249 5.959618 AAACTAGCAATGTGGGACTAAAC 57.040 39.130 0.00 0.00 0.00 2.01
249 250 4.910458 ACTAGCAATGTGGGACTAAACT 57.090 40.909 0.00 0.00 0.00 2.66
250 251 5.242795 ACTAGCAATGTGGGACTAAACTT 57.757 39.130 0.00 0.00 0.00 2.66
251 252 5.631119 ACTAGCAATGTGGGACTAAACTTT 58.369 37.500 0.00 0.00 0.00 2.66
252 253 6.775708 ACTAGCAATGTGGGACTAAACTTTA 58.224 36.000 0.00 0.00 0.00 1.85
253 254 6.879458 ACTAGCAATGTGGGACTAAACTTTAG 59.121 38.462 6.96 6.96 0.00 1.85
254 255 5.631119 AGCAATGTGGGACTAAACTTTAGT 58.369 37.500 13.09 13.09 0.00 2.24
255 256 6.775708 AGCAATGTGGGACTAAACTTTAGTA 58.224 36.000 13.18 0.00 0.00 1.82
256 257 6.879458 AGCAATGTGGGACTAAACTTTAGTAG 59.121 38.462 13.18 0.00 0.00 2.57
257 258 6.653740 GCAATGTGGGACTAAACTTTAGTAGT 59.346 38.462 13.18 0.00 39.32 2.73
258 259 7.820872 GCAATGTGGGACTAAACTTTAGTAGTA 59.179 37.037 13.18 1.88 35.54 1.82
259 260 9.886132 CAATGTGGGACTAAACTTTAGTAGTAT 57.114 33.333 13.18 3.50 35.54 2.12
261 262 8.071177 TGTGGGACTAAACTTTAGTAGTATCC 57.929 38.462 13.18 9.95 35.54 2.59
262 263 7.124750 TGTGGGACTAAACTTTAGTAGTATCCC 59.875 40.741 19.66 19.66 41.21 3.85
263 264 7.344093 GTGGGACTAAACTTTAGTAGTATCCCT 59.656 40.741 23.47 1.57 41.30 4.20
264 265 7.902941 TGGGACTAAACTTTAGTAGTATCCCTT 59.097 37.037 23.47 1.03 41.30 3.95
265 266 8.202811 GGGACTAAACTTTAGTAGTATCCCTTG 58.797 40.741 19.41 0.00 39.52 3.61
266 267 7.710044 GGACTAAACTTTAGTAGTATCCCTTGC 59.290 40.741 13.18 0.00 35.54 4.01
267 268 7.563020 ACTAAACTTTAGTAGTATCCCTTGCC 58.437 38.462 11.79 0.00 35.54 4.52
268 269 6.638021 AAACTTTAGTAGTATCCCTTGCCT 57.362 37.500 0.00 0.00 35.54 4.75
269 270 6.638021 AACTTTAGTAGTATCCCTTGCCTT 57.362 37.500 0.00 0.00 35.54 4.35
270 271 5.990668 ACTTTAGTAGTATCCCTTGCCTTG 58.009 41.667 0.00 0.00 34.56 3.61
271 272 4.417426 TTAGTAGTATCCCTTGCCTTGC 57.583 45.455 0.00 0.00 0.00 4.01
272 273 2.196595 AGTAGTATCCCTTGCCTTGCA 58.803 47.619 0.00 0.00 36.47 4.08
273 274 2.092914 AGTAGTATCCCTTGCCTTGCAC 60.093 50.000 0.00 0.00 38.71 4.57
274 275 0.698238 AGTATCCCTTGCCTTGCACA 59.302 50.000 0.00 0.00 38.71 4.57
275 276 1.075374 AGTATCCCTTGCCTTGCACAA 59.925 47.619 0.00 0.00 38.71 3.33
276 277 1.892474 GTATCCCTTGCCTTGCACAAA 59.108 47.619 0.00 0.00 38.71 2.83
277 278 1.648116 ATCCCTTGCCTTGCACAAAT 58.352 45.000 0.00 0.00 38.71 2.32
278 279 0.680618 TCCCTTGCCTTGCACAAATG 59.319 50.000 0.00 0.00 38.71 2.32
279 280 0.320946 CCCTTGCCTTGCACAAATGG 60.321 55.000 0.00 0.00 38.71 3.16
280 281 0.320946 CCTTGCCTTGCACAAATGGG 60.321 55.000 0.00 0.00 38.71 4.00
281 282 0.952010 CTTGCCTTGCACAAATGGGC 60.952 55.000 0.00 0.00 46.69 5.36
282 283 1.409251 TTGCCTTGCACAAATGGGCT 61.409 50.000 9.34 0.00 46.62 5.19
283 284 0.541530 TGCCTTGCACAAATGGGCTA 60.542 50.000 9.34 0.00 46.62 3.93
284 285 0.607620 GCCTTGCACAAATGGGCTAA 59.392 50.000 9.34 1.31 46.62 3.09
285 286 1.404583 GCCTTGCACAAATGGGCTAAG 60.405 52.381 9.34 10.23 46.62 2.18
286 287 1.895131 CCTTGCACAAATGGGCTAAGT 59.105 47.619 9.34 0.00 46.62 2.24
287 288 2.353011 CCTTGCACAAATGGGCTAAGTG 60.353 50.000 9.34 0.00 46.62 3.16
288 289 1.255882 TGCACAAATGGGCTAAGTGG 58.744 50.000 9.34 0.00 46.62 4.00
289 290 0.532115 GCACAAATGGGCTAAGTGGG 59.468 55.000 0.00 0.00 42.27 4.61
290 291 0.532115 CACAAATGGGCTAAGTGGGC 59.468 55.000 0.00 0.00 0.00 5.36
297 298 2.137692 GGCTAAGTGGGCCTCTAGG 58.862 63.158 8.81 6.01 45.57 3.02
298 299 0.398664 GGCTAAGTGGGCCTCTAGGA 60.399 60.000 8.81 0.00 45.57 2.94
299 300 1.723288 GCTAAGTGGGCCTCTAGGAT 58.277 55.000 8.81 0.00 37.39 3.24
300 301 2.050918 GCTAAGTGGGCCTCTAGGATT 58.949 52.381 8.81 0.00 37.39 3.01
301 302 2.439880 GCTAAGTGGGCCTCTAGGATTT 59.560 50.000 8.81 0.00 37.39 2.17
302 303 3.646637 GCTAAGTGGGCCTCTAGGATTTA 59.353 47.826 8.81 0.00 37.39 1.40
303 304 4.287326 GCTAAGTGGGCCTCTAGGATTTAT 59.713 45.833 8.81 0.00 37.39 1.40
304 305 5.221945 GCTAAGTGGGCCTCTAGGATTTATT 60.222 44.000 8.81 0.00 37.39 1.40
305 306 6.013639 GCTAAGTGGGCCTCTAGGATTTATTA 60.014 42.308 8.81 0.00 37.39 0.98
306 307 6.441088 AAGTGGGCCTCTAGGATTTATTAG 57.559 41.667 8.81 0.00 37.39 1.73
307 308 4.846940 AGTGGGCCTCTAGGATTTATTAGG 59.153 45.833 6.27 0.00 37.39 2.69
308 309 4.844655 GTGGGCCTCTAGGATTTATTAGGA 59.155 45.833 4.53 0.00 37.39 2.94
309 310 5.309806 GTGGGCCTCTAGGATTTATTAGGAA 59.690 44.000 4.53 0.00 37.39 3.36
310 311 6.012421 GTGGGCCTCTAGGATTTATTAGGAAT 60.012 42.308 4.53 0.00 37.39 3.01
311 312 6.566480 TGGGCCTCTAGGATTTATTAGGAATT 59.434 38.462 4.53 0.00 37.39 2.17
312 313 7.075009 TGGGCCTCTAGGATTTATTAGGAATTT 59.925 37.037 4.53 0.00 37.39 1.82
313 314 7.612244 GGGCCTCTAGGATTTATTAGGAATTTC 59.388 40.741 0.84 0.00 37.39 2.17
314 315 8.387039 GGCCTCTAGGATTTATTAGGAATTTCT 58.613 37.037 0.00 0.00 37.39 2.52
315 316 9.225436 GCCTCTAGGATTTATTAGGAATTTCTG 57.775 37.037 0.00 0.00 37.39 3.02
330 331 8.011844 AGGAATTTCTGAAATAGTTATTGGGC 57.988 34.615 15.45 0.00 0.00 5.36
331 332 7.841222 AGGAATTTCTGAAATAGTTATTGGGCT 59.159 33.333 15.45 0.00 0.00 5.19
332 333 7.922811 GGAATTTCTGAAATAGTTATTGGGCTG 59.077 37.037 15.45 0.00 0.00 4.85
333 334 5.835113 TTCTGAAATAGTTATTGGGCTGC 57.165 39.130 0.00 0.00 0.00 5.25
334 335 4.207165 TCTGAAATAGTTATTGGGCTGCC 58.793 43.478 11.05 11.05 0.00 4.85
335 336 3.295973 TGAAATAGTTATTGGGCTGCCC 58.704 45.455 30.97 30.97 45.71 5.36
349 350 4.367039 GGCTGCCCCAATATAGACTAAA 57.633 45.455 7.66 0.00 0.00 1.85
350 351 4.923415 GGCTGCCCCAATATAGACTAAAT 58.077 43.478 7.66 0.00 0.00 1.40
351 352 5.325239 GGCTGCCCCAATATAGACTAAATT 58.675 41.667 7.66 0.00 0.00 1.82
352 353 5.416013 GGCTGCCCCAATATAGACTAAATTC 59.584 44.000 7.66 0.00 0.00 2.17
353 354 5.416013 GCTGCCCCAATATAGACTAAATTCC 59.584 44.000 0.00 0.00 0.00 3.01
354 355 6.523035 TGCCCCAATATAGACTAAATTCCA 57.477 37.500 0.00 0.00 0.00 3.53
355 356 6.542821 TGCCCCAATATAGACTAAATTCCAG 58.457 40.000 0.00 0.00 0.00 3.86
356 357 5.416013 GCCCCAATATAGACTAAATTCCAGC 59.584 44.000 0.00 0.00 0.00 4.85
357 358 6.542821 CCCCAATATAGACTAAATTCCAGCA 58.457 40.000 0.00 0.00 0.00 4.41
358 359 6.431234 CCCCAATATAGACTAAATTCCAGCAC 59.569 42.308 0.00 0.00 0.00 4.40
359 360 7.227156 CCCAATATAGACTAAATTCCAGCACT 58.773 38.462 0.00 0.00 0.00 4.40
360 361 7.721399 CCCAATATAGACTAAATTCCAGCACTT 59.279 37.037 0.00 0.00 0.00 3.16
361 362 9.125026 CCAATATAGACTAAATTCCAGCACTTT 57.875 33.333 0.00 0.00 0.00 2.66
365 366 6.809630 AGACTAAATTCCAGCACTTTTCTC 57.190 37.500 0.00 0.00 0.00 2.87
366 367 5.707764 AGACTAAATTCCAGCACTTTTCTCC 59.292 40.000 0.00 0.00 0.00 3.71
367 368 5.635120 ACTAAATTCCAGCACTTTTCTCCT 58.365 37.500 0.00 0.00 0.00 3.69
368 369 6.071320 ACTAAATTCCAGCACTTTTCTCCTT 58.929 36.000 0.00 0.00 0.00 3.36
369 370 7.231467 ACTAAATTCCAGCACTTTTCTCCTTA 58.769 34.615 0.00 0.00 0.00 2.69
370 371 6.976934 AAATTCCAGCACTTTTCTCCTTAA 57.023 33.333 0.00 0.00 0.00 1.85
371 372 6.976934 AATTCCAGCACTTTTCTCCTTAAA 57.023 33.333 0.00 0.00 0.00 1.52
372 373 7.544804 AATTCCAGCACTTTTCTCCTTAAAT 57.455 32.000 0.00 0.00 0.00 1.40
373 374 6.575162 TTCCAGCACTTTTCTCCTTAAATC 57.425 37.500 0.00 0.00 0.00 2.17
374 375 5.630121 TCCAGCACTTTTCTCCTTAAATCA 58.370 37.500 0.00 0.00 0.00 2.57
375 376 6.248433 TCCAGCACTTTTCTCCTTAAATCAT 58.752 36.000 0.00 0.00 0.00 2.45
376 377 6.721208 TCCAGCACTTTTCTCCTTAAATCATT 59.279 34.615 0.00 0.00 0.00 2.57
377 378 6.810182 CCAGCACTTTTCTCCTTAAATCATTG 59.190 38.462 0.00 0.00 0.00 2.82
378 379 6.309737 CAGCACTTTTCTCCTTAAATCATTGC 59.690 38.462 0.00 0.00 0.00 3.56
379 380 6.015180 AGCACTTTTCTCCTTAAATCATTGCA 60.015 34.615 0.00 0.00 0.00 4.08
380 381 6.815142 GCACTTTTCTCCTTAAATCATTGCAT 59.185 34.615 0.00 0.00 0.00 3.96
381 382 7.975616 GCACTTTTCTCCTTAAATCATTGCATA 59.024 33.333 0.00 0.00 0.00 3.14
387 388 8.922931 TCTCCTTAAATCATTGCATATAAGCA 57.077 30.769 0.00 0.00 43.99 3.91
401 402 8.464770 TGCATATAAGCAAATTTGTTGAGTTC 57.535 30.769 19.03 1.16 42.46 3.01
402 403 7.273164 TGCATATAAGCAAATTTGTTGAGTTCG 59.727 33.333 19.03 3.73 42.46 3.95
403 404 7.253750 GCATATAAGCAAATTTGTTGAGTTCGG 60.254 37.037 19.03 4.08 0.00 4.30
404 405 4.647424 AAGCAAATTTGTTGAGTTCGGA 57.353 36.364 19.03 0.00 0.00 4.55
405 406 3.964909 AGCAAATTTGTTGAGTTCGGAC 58.035 40.909 19.03 0.00 0.00 4.79
406 407 2.719046 GCAAATTTGTTGAGTTCGGACG 59.281 45.455 19.03 0.00 0.00 4.79
407 408 2.681152 AATTTGTTGAGTTCGGACGC 57.319 45.000 0.00 0.00 0.00 5.19
408 409 1.878953 ATTTGTTGAGTTCGGACGCT 58.121 45.000 0.00 0.00 0.00 5.07
409 410 0.934496 TTTGTTGAGTTCGGACGCTG 59.066 50.000 0.00 0.00 0.00 5.18
410 411 0.103390 TTGTTGAGTTCGGACGCTGA 59.897 50.000 0.00 0.00 0.00 4.26
411 412 0.103390 TGTTGAGTTCGGACGCTGAA 59.897 50.000 0.00 0.00 0.00 3.02
412 413 1.270094 TGTTGAGTTCGGACGCTGAAT 60.270 47.619 0.00 0.00 31.07 2.57
413 414 1.798813 GTTGAGTTCGGACGCTGAATT 59.201 47.619 0.00 1.31 31.07 2.17
414 415 2.991190 GTTGAGTTCGGACGCTGAATTA 59.009 45.455 0.00 0.00 31.07 1.40
415 416 2.602878 TGAGTTCGGACGCTGAATTAC 58.397 47.619 0.00 1.99 31.07 1.89
416 417 2.230508 TGAGTTCGGACGCTGAATTACT 59.769 45.455 0.00 0.00 31.07 2.24
417 418 2.853003 GAGTTCGGACGCTGAATTACTC 59.147 50.000 4.75 4.56 31.07 2.59
418 419 1.925185 GTTCGGACGCTGAATTACTCC 59.075 52.381 4.75 0.00 31.07 3.85
419 420 0.458669 TCGGACGCTGAATTACTCCC 59.541 55.000 0.00 0.00 0.00 4.30
420 421 0.174845 CGGACGCTGAATTACTCCCA 59.825 55.000 0.00 0.00 0.00 4.37
421 422 1.653151 GGACGCTGAATTACTCCCAC 58.347 55.000 0.00 0.00 0.00 4.61
422 423 1.207329 GGACGCTGAATTACTCCCACT 59.793 52.381 0.00 0.00 0.00 4.00
423 424 2.429610 GGACGCTGAATTACTCCCACTA 59.570 50.000 0.00 0.00 0.00 2.74
424 425 3.118884 GGACGCTGAATTACTCCCACTAA 60.119 47.826 0.00 0.00 0.00 2.24
425 426 4.113354 GACGCTGAATTACTCCCACTAAG 58.887 47.826 0.00 0.00 0.00 2.18
426 427 3.767673 ACGCTGAATTACTCCCACTAAGA 59.232 43.478 0.00 0.00 0.00 2.10
427 428 4.222145 ACGCTGAATTACTCCCACTAAGAA 59.778 41.667 0.00 0.00 0.00 2.52
428 429 4.567159 CGCTGAATTACTCCCACTAAGAAC 59.433 45.833 0.00 0.00 0.00 3.01
429 430 4.567159 GCTGAATTACTCCCACTAAGAACG 59.433 45.833 0.00 0.00 0.00 3.95
430 431 5.080969 TGAATTACTCCCACTAAGAACGG 57.919 43.478 0.00 0.00 0.00 4.44
431 432 4.529377 TGAATTACTCCCACTAAGAACGGT 59.471 41.667 0.00 0.00 0.00 4.83
432 433 4.732672 ATTACTCCCACTAAGAACGGTC 57.267 45.455 0.00 0.00 0.00 4.79
433 434 2.305858 ACTCCCACTAAGAACGGTCT 57.694 50.000 0.00 0.00 34.72 3.85
434 435 3.446442 ACTCCCACTAAGAACGGTCTA 57.554 47.619 1.80 0.00 32.16 2.59
435 436 3.771216 ACTCCCACTAAGAACGGTCTAA 58.229 45.455 1.80 0.00 32.16 2.10
436 437 4.154942 ACTCCCACTAAGAACGGTCTAAA 58.845 43.478 1.80 0.00 32.16 1.85
437 438 4.220163 ACTCCCACTAAGAACGGTCTAAAG 59.780 45.833 1.80 7.35 32.16 1.85
438 439 4.154942 TCCCACTAAGAACGGTCTAAAGT 58.845 43.478 1.80 8.09 32.87 2.66
439 440 5.324409 TCCCACTAAGAACGGTCTAAAGTA 58.676 41.667 15.79 0.00 31.94 2.24
440 441 5.416952 TCCCACTAAGAACGGTCTAAAGTAG 59.583 44.000 15.79 10.85 31.94 2.57
441 442 5.184671 CCCACTAAGAACGGTCTAAAGTAGT 59.815 44.000 15.79 11.44 31.94 2.73
442 443 6.294955 CCCACTAAGAACGGTCTAAAGTAGTT 60.295 42.308 15.79 0.00 31.94 2.24
443 444 6.585322 CCACTAAGAACGGTCTAAAGTAGTTG 59.415 42.308 15.79 7.25 31.94 3.16
444 445 6.585322 CACTAAGAACGGTCTAAAGTAGTTGG 59.415 42.308 15.79 1.73 31.94 3.77
445 446 4.532314 AGAACGGTCTAAAGTAGTTGGG 57.468 45.455 0.00 0.00 29.93 4.12
446 447 2.756840 ACGGTCTAAAGTAGTTGGGC 57.243 50.000 0.00 0.00 0.00 5.36
447 448 1.067354 ACGGTCTAAAGTAGTTGGGCG 60.067 52.381 0.00 0.00 0.00 6.13
448 449 1.738030 CGGTCTAAAGTAGTTGGGCGG 60.738 57.143 0.00 0.00 0.00 6.13
449 450 1.366679 GTCTAAAGTAGTTGGGCGGC 58.633 55.000 0.00 0.00 0.00 6.53
450 451 0.108520 TCTAAAGTAGTTGGGCGGCG 60.109 55.000 0.51 0.51 0.00 6.46
451 452 1.078988 TAAAGTAGTTGGGCGGCGG 60.079 57.895 9.78 0.00 0.00 6.13
452 453 1.543065 TAAAGTAGTTGGGCGGCGGA 61.543 55.000 9.78 0.00 0.00 5.54
453 454 2.798148 AAAGTAGTTGGGCGGCGGAG 62.798 60.000 9.78 0.00 0.00 4.63
454 455 4.078516 GTAGTTGGGCGGCGGAGT 62.079 66.667 9.78 0.00 0.00 3.85
455 456 4.077184 TAGTTGGGCGGCGGAGTG 62.077 66.667 9.78 0.00 0.00 3.51
462 463 4.070552 GCGGCGGAGTGAGGTCTT 62.071 66.667 9.78 0.00 0.00 3.01
463 464 2.125912 CGGCGGAGTGAGGTCTTG 60.126 66.667 0.00 0.00 0.00 3.02
464 465 2.435059 GGCGGAGTGAGGTCTTGC 60.435 66.667 0.00 0.00 0.00 4.01
465 466 2.811317 GCGGAGTGAGGTCTTGCG 60.811 66.667 0.00 0.00 0.00 4.85
466 467 2.962569 CGGAGTGAGGTCTTGCGA 59.037 61.111 0.00 0.00 0.00 5.10
467 468 1.153939 CGGAGTGAGGTCTTGCGAG 60.154 63.158 0.00 0.00 0.00 5.03
468 469 1.867919 CGGAGTGAGGTCTTGCGAGT 61.868 60.000 0.00 0.00 0.00 4.18
469 470 0.318762 GGAGTGAGGTCTTGCGAGTT 59.681 55.000 0.00 0.00 0.00 3.01
470 471 1.423395 GAGTGAGGTCTTGCGAGTTG 58.577 55.000 0.00 0.00 0.00 3.16
471 472 0.753262 AGTGAGGTCTTGCGAGTTGT 59.247 50.000 0.00 0.00 0.00 3.32
472 473 1.139058 AGTGAGGTCTTGCGAGTTGTT 59.861 47.619 0.00 0.00 0.00 2.83
473 474 1.261619 GTGAGGTCTTGCGAGTTGTTG 59.738 52.381 0.00 0.00 0.00 3.33
474 475 0.868406 GAGGTCTTGCGAGTTGTTGG 59.132 55.000 0.00 0.00 0.00 3.77
475 476 0.468226 AGGTCTTGCGAGTTGTTGGA 59.532 50.000 0.00 0.00 0.00 3.53
476 477 1.134220 AGGTCTTGCGAGTTGTTGGAA 60.134 47.619 0.00 0.00 0.00 3.53
477 478 1.002792 GGTCTTGCGAGTTGTTGGAAC 60.003 52.381 0.00 0.00 0.00 3.62
478 479 1.668751 GTCTTGCGAGTTGTTGGAACA 59.331 47.619 0.00 0.00 37.08 3.18
496 497 7.873719 TGGAACAAATCATGGATACGTTTAT 57.126 32.000 0.00 0.00 34.08 1.40
497 498 7.702386 TGGAACAAATCATGGATACGTTTATG 58.298 34.615 0.00 0.00 34.08 1.90
498 499 7.138736 GGAACAAATCATGGATACGTTTATGG 58.861 38.462 0.00 0.00 42.51 2.74
499 500 6.633500 ACAAATCATGGATACGTTTATGGG 57.367 37.500 0.00 0.00 42.51 4.00
500 501 5.009610 ACAAATCATGGATACGTTTATGGGC 59.990 40.000 0.00 0.00 42.51 5.36
501 502 4.640771 ATCATGGATACGTTTATGGGCT 57.359 40.909 0.00 0.00 42.51 5.19
502 503 3.738982 TCATGGATACGTTTATGGGCTG 58.261 45.455 0.00 0.00 42.51 4.85
503 504 2.631160 TGGATACGTTTATGGGCTGG 57.369 50.000 0.00 0.00 42.51 4.85
504 505 1.142060 TGGATACGTTTATGGGCTGGG 59.858 52.381 0.00 0.00 42.51 4.45
505 506 1.142262 GGATACGTTTATGGGCTGGGT 59.858 52.381 0.00 0.00 0.00 4.51
506 507 2.218603 GATACGTTTATGGGCTGGGTG 58.781 52.381 0.00 0.00 0.00 4.61
507 508 0.985760 TACGTTTATGGGCTGGGTGT 59.014 50.000 0.00 0.00 0.00 4.16
508 509 0.985760 ACGTTTATGGGCTGGGTGTA 59.014 50.000 0.00 0.00 0.00 2.90
509 510 1.562475 ACGTTTATGGGCTGGGTGTAT 59.438 47.619 0.00 0.00 0.00 2.29
510 511 2.025699 ACGTTTATGGGCTGGGTGTATT 60.026 45.455 0.00 0.00 0.00 1.89
511 512 3.200385 ACGTTTATGGGCTGGGTGTATTA 59.800 43.478 0.00 0.00 0.00 0.98
512 513 4.141344 ACGTTTATGGGCTGGGTGTATTAT 60.141 41.667 0.00 0.00 0.00 1.28
513 514 4.454504 CGTTTATGGGCTGGGTGTATTATC 59.545 45.833 0.00 0.00 0.00 1.75
514 515 5.631119 GTTTATGGGCTGGGTGTATTATCT 58.369 41.667 0.00 0.00 0.00 1.98
515 516 5.499004 TTATGGGCTGGGTGTATTATCTC 57.501 43.478 0.00 0.00 0.00 2.75
516 517 2.770447 TGGGCTGGGTGTATTATCTCA 58.230 47.619 0.00 0.00 0.00 3.27
517 518 3.119319 TGGGCTGGGTGTATTATCTCAA 58.881 45.455 0.00 0.00 0.00 3.02
518 519 3.525609 TGGGCTGGGTGTATTATCTCAAA 59.474 43.478 0.00 0.00 0.00 2.69
519 520 3.883489 GGGCTGGGTGTATTATCTCAAAC 59.117 47.826 0.00 0.00 0.00 2.93
520 521 4.523083 GGCTGGGTGTATTATCTCAAACA 58.477 43.478 0.00 0.00 0.00 2.83
521 522 4.947388 GGCTGGGTGTATTATCTCAAACAA 59.053 41.667 0.00 0.00 0.00 2.83
522 523 5.417580 GGCTGGGTGTATTATCTCAAACAAA 59.582 40.000 0.00 0.00 0.00 2.83
523 524 6.096846 GGCTGGGTGTATTATCTCAAACAAAT 59.903 38.462 0.00 0.00 0.00 2.32
524 525 7.363793 GGCTGGGTGTATTATCTCAAACAAATT 60.364 37.037 0.00 0.00 0.00 1.82
525 526 8.034804 GCTGGGTGTATTATCTCAAACAAATTT 58.965 33.333 0.00 0.00 0.00 1.82
526 527 9.927668 CTGGGTGTATTATCTCAAACAAATTTT 57.072 29.630 0.00 0.00 0.00 1.82
538 539 9.859427 TCTCAAACAAATTTTTATGGCAGATAG 57.141 29.630 0.00 0.00 0.00 2.08
539 540 9.859427 CTCAAACAAATTTTTATGGCAGATAGA 57.141 29.630 0.00 0.00 0.00 1.98
542 543 9.822185 AAACAAATTTTTATGGCAGATAGATCC 57.178 29.630 0.00 0.00 0.00 3.36
543 544 8.773033 ACAAATTTTTATGGCAGATAGATCCT 57.227 30.769 0.00 0.00 0.00 3.24
544 545 8.636213 ACAAATTTTTATGGCAGATAGATCCTG 58.364 33.333 0.00 0.00 34.88 3.86
545 546 8.636213 CAAATTTTTATGGCAGATAGATCCTGT 58.364 33.333 0.00 0.00 34.29 4.00
546 547 9.866655 AAATTTTTATGGCAGATAGATCCTGTA 57.133 29.630 0.00 0.00 34.29 2.74
572 573 2.818921 ACTCAATCAGTCAGAGCTCCT 58.181 47.619 10.93 0.00 32.71 3.69
573 574 3.974719 ACTCAATCAGTCAGAGCTCCTA 58.025 45.455 10.93 0.00 32.71 2.94
592 593 4.007659 CCTAAGGTGTCACCCATTGTAAC 58.992 47.826 18.80 0.00 39.75 2.50
637 638 7.775561 AGACTAAATTATCAACATTCAGACCCC 59.224 37.037 0.00 0.00 0.00 4.95
737 739 4.722700 GCCACGCCACCACTCCAT 62.723 66.667 0.00 0.00 0.00 3.41
766 768 2.632512 ACCGCACCTTGGAAATGAAATT 59.367 40.909 0.00 0.00 38.98 1.82
768 770 2.995258 CGCACCTTGGAAATGAAATTGG 59.005 45.455 0.00 0.00 36.10 3.16
769 771 3.554752 CGCACCTTGGAAATGAAATTGGT 60.555 43.478 0.00 0.00 36.10 3.67
770 772 3.747529 GCACCTTGGAAATGAAATTGGTG 59.252 43.478 0.00 0.00 44.03 4.17
771 773 4.502950 GCACCTTGGAAATGAAATTGGTGA 60.503 41.667 12.26 0.00 43.97 4.02
845 849 2.608090 CTCGAGATTAAACCGGAAAGCC 59.392 50.000 9.46 0.00 0.00 4.35
860 864 5.277345 CCGGAAAGCCAACTCTAATAAATCG 60.277 44.000 0.00 0.00 0.00 3.34
863 867 4.423625 AGCCAACTCTAATAAATCGCCT 57.576 40.909 0.00 0.00 0.00 5.52
961 965 0.318762 GACACCACCACCACTCTCTC 59.681 60.000 0.00 0.00 0.00 3.20
984 991 1.319799 CAATCCCCTCCTCCTCCCT 59.680 63.158 0.00 0.00 0.00 4.20
996 1003 0.620700 TCCTCCCTGAAACCCTAGCC 60.621 60.000 0.00 0.00 0.00 3.93
1605 1618 2.183300 CCGCAGCAGTAACGCCTA 59.817 61.111 0.00 0.00 0.00 3.93
1637 1650 3.758554 ACAGCGGATTTAAGTTGCATCTT 59.241 39.130 14.21 14.21 0.00 2.40
1641 1654 5.648092 AGCGGATTTAAGTTGCATCTTAAGT 59.352 36.000 22.64 21.07 39.82 2.24
1667 1680 3.244526 TGCTGTTGATTTAGTGCTCTCCA 60.245 43.478 0.00 0.00 0.00 3.86
1749 1762 9.521841 TCCTCTATGTTATAAGTGATTCGATCT 57.478 33.333 0.00 0.00 0.00 2.75
1860 1873 7.327032 GGCATTTCTCTGATTACTTTTGTTCAC 59.673 37.037 0.00 0.00 0.00 3.18
1962 1976 8.518151 TGCACAATCAAATATTACAACAACTG 57.482 30.769 0.00 0.00 0.00 3.16
1971 1985 2.145397 TACAACAACTGTGGGCCAAA 57.855 45.000 8.40 0.00 39.20 3.28
2120 2146 0.320946 TACCAAGGGCGTAACACTGC 60.321 55.000 0.00 0.00 0.00 4.40
2136 2162 4.697514 ACACTGCTCCATGTATGATGTAC 58.302 43.478 0.00 0.00 0.00 2.90
2137 2163 3.737774 CACTGCTCCATGTATGATGTACG 59.262 47.826 0.00 0.00 0.00 3.67
2138 2164 3.384789 ACTGCTCCATGTATGATGTACGT 59.615 43.478 0.00 0.00 0.00 3.57
2139 2165 4.583073 ACTGCTCCATGTATGATGTACGTA 59.417 41.667 0.00 0.00 0.00 3.57
2183 2209 3.966006 ACTGTCTCTGATGTCATATGGCT 59.034 43.478 9.09 0.00 0.00 4.75
2192 2218 2.047061 TGTCATATGGCTGTAGGGACC 58.953 52.381 9.09 0.00 0.00 4.46
2276 2302 3.960102 TCATAGGAATGGGGAATTTGCAC 59.040 43.478 0.00 0.00 33.61 4.57
2300 2326 5.591099 TGCAAACTCCTGACATTTTCTTTC 58.409 37.500 0.00 0.00 0.00 2.62
2301 2327 5.126869 TGCAAACTCCTGACATTTTCTTTCA 59.873 36.000 0.00 0.00 0.00 2.69
2304 2330 7.095899 GCAAACTCCTGACATTTTCTTTCATTC 60.096 37.037 0.00 0.00 0.00 2.67
2348 2375 6.800072 ATTCTCTTCGAGGTTCTATTCCTT 57.200 37.500 0.00 0.00 35.20 3.36
2349 2376 5.584253 TCTCTTCGAGGTTCTATTCCTTG 57.416 43.478 0.00 0.00 37.71 3.61
2415 2449 8.784043 AGCTACCAACTAACTTATTTGAAACTG 58.216 33.333 0.00 0.00 0.00 3.16
2458 2492 1.069906 CACCAAGTAGCTTTGCGTGTC 60.070 52.381 0.00 0.00 30.94 3.67
2491 2688 2.943033 ACAGTATTATGTTTGGCTCCGC 59.057 45.455 0.00 0.00 0.00 5.54
2504 2701 1.302033 CTCCGCATGGTATCCAGCC 60.302 63.158 0.00 0.00 36.75 4.85
2576 2773 3.768215 ACTGCCCAGTTAACTACTACTCC 59.232 47.826 8.04 0.00 38.83 3.85
2577 2774 3.102204 TGCCCAGTTAACTACTACTCCC 58.898 50.000 8.04 0.00 34.56 4.30
2578 2775 3.245875 TGCCCAGTTAACTACTACTCCCT 60.246 47.826 8.04 0.00 34.56 4.20
2579 2776 3.384146 GCCCAGTTAACTACTACTCCCTC 59.616 52.174 8.04 0.00 34.56 4.30
2580 2777 4.869451 CCCAGTTAACTACTACTCCCTCT 58.131 47.826 8.04 0.00 34.56 3.69
2581 2778 4.645588 CCCAGTTAACTACTACTCCCTCTG 59.354 50.000 8.04 0.00 34.56 3.35
2582 2779 5.262804 CCAGTTAACTACTACTCCCTCTGT 58.737 45.833 8.04 0.00 34.56 3.41
2583 2780 6.421485 CCAGTTAACTACTACTCCCTCTGTA 58.579 44.000 8.04 0.00 34.56 2.74
2584 2781 6.888632 CCAGTTAACTACTACTCCCTCTGTAA 59.111 42.308 8.04 0.00 34.56 2.41
2585 2782 7.395489 CCAGTTAACTACTACTCCCTCTGTAAA 59.605 40.741 8.04 0.00 34.56 2.01
2586 2783 8.242739 CAGTTAACTACTACTCCCTCTGTAAAC 58.757 40.741 8.04 0.00 34.56 2.01
2587 2784 8.169393 AGTTAACTACTACTCCCTCTGTAAACT 58.831 37.037 6.26 0.00 34.56 2.66
2588 2785 9.454859 GTTAACTACTACTCCCTCTGTAAACTA 57.545 37.037 0.00 0.00 0.00 2.24
2598 2795 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2599 2796 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.812127 GTCACTTGGAAGCTGAAACATTTTT 59.188 36.000 0.00 0.00 0.00 1.94
12 13 5.351458 GTCACTTGGAAGCTGAAACATTTT 58.649 37.500 0.00 0.00 0.00 1.82
13 14 4.202151 GGTCACTTGGAAGCTGAAACATTT 60.202 41.667 0.00 0.00 0.00 2.32
14 15 3.319122 GGTCACTTGGAAGCTGAAACATT 59.681 43.478 0.00 0.00 0.00 2.71
15 16 2.887152 GGTCACTTGGAAGCTGAAACAT 59.113 45.455 0.00 0.00 0.00 2.71
16 17 2.092429 AGGTCACTTGGAAGCTGAAACA 60.092 45.455 0.00 0.00 0.00 2.83
17 18 2.576615 AGGTCACTTGGAAGCTGAAAC 58.423 47.619 0.00 0.00 0.00 2.78
18 19 3.297134 AAGGTCACTTGGAAGCTGAAA 57.703 42.857 0.00 0.00 35.09 2.69
19 20 3.214328 GAAAGGTCACTTGGAAGCTGAA 58.786 45.455 0.00 0.00 36.93 3.02
20 21 2.806745 CGAAAGGTCACTTGGAAGCTGA 60.807 50.000 0.00 0.00 36.93 4.26
21 22 1.532868 CGAAAGGTCACTTGGAAGCTG 59.467 52.381 0.00 0.00 36.93 4.24
22 23 1.884235 CGAAAGGTCACTTGGAAGCT 58.116 50.000 0.00 0.00 36.93 3.74
23 24 0.238553 GCGAAAGGTCACTTGGAAGC 59.761 55.000 0.00 0.00 36.93 3.86
24 25 1.593196 TGCGAAAGGTCACTTGGAAG 58.407 50.000 0.00 0.00 36.93 3.46
25 26 2.270352 ATGCGAAAGGTCACTTGGAA 57.730 45.000 0.00 0.00 36.93 3.53
26 27 2.614481 GGTATGCGAAAGGTCACTTGGA 60.614 50.000 0.00 0.00 36.93 3.53
27 28 1.737793 GGTATGCGAAAGGTCACTTGG 59.262 52.381 0.00 0.00 36.93 3.61
28 29 1.737793 GGGTATGCGAAAGGTCACTTG 59.262 52.381 0.00 0.00 36.93 3.16
29 30 1.349688 TGGGTATGCGAAAGGTCACTT 59.650 47.619 0.00 0.00 38.99 3.16
30 31 0.981183 TGGGTATGCGAAAGGTCACT 59.019 50.000 0.00 0.00 0.00 3.41
31 32 2.038387 ATGGGTATGCGAAAGGTCAC 57.962 50.000 0.00 0.00 0.00 3.67
32 33 2.769663 ACTATGGGTATGCGAAAGGTCA 59.230 45.455 0.00 0.00 0.00 4.02
33 34 3.131396 CACTATGGGTATGCGAAAGGTC 58.869 50.000 0.00 0.00 0.00 3.85
34 35 2.745152 GCACTATGGGTATGCGAAAGGT 60.745 50.000 0.00 0.00 0.00 3.50
35 36 1.873591 GCACTATGGGTATGCGAAAGG 59.126 52.381 0.00 0.00 0.00 3.11
41 42 1.507141 GCCACGCACTATGGGTATGC 61.507 60.000 0.00 1.78 41.87 3.14
42 43 0.179059 TGCCACGCACTATGGGTATG 60.179 55.000 0.00 0.00 41.87 2.39
43 44 0.544223 TTGCCACGCACTATGGGTAT 59.456 50.000 0.00 0.00 41.87 2.73
44 45 0.325272 TTTGCCACGCACTATGGGTA 59.675 50.000 0.00 0.00 41.87 3.69
45 46 0.538516 TTTTGCCACGCACTATGGGT 60.539 50.000 0.00 0.00 44.79 4.51
46 47 0.600557 TTTTTGCCACGCACTATGGG 59.399 50.000 0.00 0.00 38.71 4.00
47 48 2.652941 ATTTTTGCCACGCACTATGG 57.347 45.000 0.00 0.00 38.71 2.74
48 49 5.286082 GTCTAAATTTTTGCCACGCACTATG 59.714 40.000 0.00 0.00 38.71 2.23
49 50 5.048364 TGTCTAAATTTTTGCCACGCACTAT 60.048 36.000 0.00 0.00 38.71 2.12
50 51 4.276183 TGTCTAAATTTTTGCCACGCACTA 59.724 37.500 0.00 0.00 38.71 2.74
51 52 3.067461 TGTCTAAATTTTTGCCACGCACT 59.933 39.130 0.00 0.00 38.71 4.40
52 53 3.376540 TGTCTAAATTTTTGCCACGCAC 58.623 40.909 0.00 0.00 38.71 5.34
53 54 3.717400 TGTCTAAATTTTTGCCACGCA 57.283 38.095 0.00 0.00 36.47 5.24
54 55 3.300590 CGATGTCTAAATTTTTGCCACGC 59.699 43.478 0.00 0.00 0.00 5.34
55 56 3.851403 CCGATGTCTAAATTTTTGCCACG 59.149 43.478 0.00 0.00 0.00 4.94
56 57 3.612423 GCCGATGTCTAAATTTTTGCCAC 59.388 43.478 0.00 0.00 0.00 5.01
57 58 3.509575 AGCCGATGTCTAAATTTTTGCCA 59.490 39.130 0.00 0.00 0.00 4.92
58 59 4.105486 GAGCCGATGTCTAAATTTTTGCC 58.895 43.478 0.00 0.00 0.00 4.52
59 60 3.786048 CGAGCCGATGTCTAAATTTTTGC 59.214 43.478 0.00 0.00 0.00 3.68
60 61 4.342772 CCGAGCCGATGTCTAAATTTTTG 58.657 43.478 0.00 0.00 0.00 2.44
61 62 3.181500 GCCGAGCCGATGTCTAAATTTTT 60.181 43.478 0.00 0.00 0.00 1.94
62 63 2.354821 GCCGAGCCGATGTCTAAATTTT 59.645 45.455 0.00 0.00 0.00 1.82
63 64 1.940613 GCCGAGCCGATGTCTAAATTT 59.059 47.619 0.00 0.00 0.00 1.82
64 65 1.139058 AGCCGAGCCGATGTCTAAATT 59.861 47.619 0.00 0.00 0.00 1.82
65 66 0.753262 AGCCGAGCCGATGTCTAAAT 59.247 50.000 0.00 0.00 0.00 1.40
66 67 0.102481 GAGCCGAGCCGATGTCTAAA 59.898 55.000 0.00 0.00 0.00 1.85
67 68 1.035385 TGAGCCGAGCCGATGTCTAA 61.035 55.000 0.00 0.00 0.00 2.10
68 69 0.823769 ATGAGCCGAGCCGATGTCTA 60.824 55.000 0.00 0.00 0.00 2.59
69 70 1.680522 AATGAGCCGAGCCGATGTCT 61.681 55.000 0.00 0.00 0.00 3.41
70 71 1.218230 GAATGAGCCGAGCCGATGTC 61.218 60.000 0.00 0.00 0.00 3.06
71 72 1.227380 GAATGAGCCGAGCCGATGT 60.227 57.895 0.00 0.00 0.00 3.06
72 73 1.958205 GGAATGAGCCGAGCCGATG 60.958 63.158 0.00 0.00 0.00 3.84
73 74 2.423446 GGAATGAGCCGAGCCGAT 59.577 61.111 0.00 0.00 0.00 4.18
74 75 3.849951 GGGAATGAGCCGAGCCGA 61.850 66.667 0.00 0.00 0.00 5.54
77 78 4.838152 TGCGGGAATGAGCCGAGC 62.838 66.667 0.00 0.00 34.29 5.03
78 79 2.125147 TTGCGGGAATGAGCCGAG 60.125 61.111 0.00 0.00 0.00 4.63
79 80 2.435938 GTTGCGGGAATGAGCCGA 60.436 61.111 0.00 0.00 0.00 5.54
80 81 3.508840 GGTTGCGGGAATGAGCCG 61.509 66.667 0.00 0.00 0.00 5.52
81 82 3.140814 GGGTTGCGGGAATGAGCC 61.141 66.667 0.00 0.00 0.00 4.70
82 83 3.508840 CGGGTTGCGGGAATGAGC 61.509 66.667 0.00 0.00 0.00 4.26
83 84 3.508840 GCGGGTTGCGGGAATGAG 61.509 66.667 0.00 0.00 0.00 2.90
140 141 3.559657 ATATCCACGCGCGCTCCTC 62.560 63.158 32.58 0.00 0.00 3.71
141 142 3.559657 GATATCCACGCGCGCTCCT 62.560 63.158 32.58 15.26 0.00 3.69
142 143 3.106407 GATATCCACGCGCGCTCC 61.106 66.667 32.58 8.46 0.00 4.70
143 144 3.106407 GGATATCCACGCGCGCTC 61.106 66.667 32.58 17.47 35.64 5.03
144 145 4.664677 GGGATATCCACGCGCGCT 62.665 66.667 32.58 14.89 37.91 5.92
145 146 4.664677 AGGGATATCCACGCGCGC 62.665 66.667 32.58 23.91 38.24 6.86
146 147 2.421877 AAGAGGGATATCCACGCGCG 62.422 60.000 30.96 30.96 38.24 6.86
147 148 0.946221 CAAGAGGGATATCCACGCGC 60.946 60.000 23.27 7.99 38.24 6.86
148 149 0.389391 ACAAGAGGGATATCCACGCG 59.611 55.000 23.27 3.53 38.24 6.01
149 150 2.103263 AGAACAAGAGGGATATCCACGC 59.897 50.000 23.27 13.70 38.24 5.34
150 151 3.384789 TGAGAACAAGAGGGATATCCACG 59.615 47.826 23.27 8.54 38.24 4.94
151 152 5.303971 CATGAGAACAAGAGGGATATCCAC 58.696 45.833 23.27 15.62 38.24 4.02
152 153 4.202398 GCATGAGAACAAGAGGGATATCCA 60.202 45.833 23.27 0.00 38.24 3.41
153 154 4.041444 AGCATGAGAACAAGAGGGATATCC 59.959 45.833 13.87 13.87 0.00 2.59
154 155 5.221601 TGAGCATGAGAACAAGAGGGATATC 60.222 44.000 0.00 0.00 0.00 1.63
155 156 4.657504 TGAGCATGAGAACAAGAGGGATAT 59.342 41.667 0.00 0.00 0.00 1.63
156 157 4.033009 TGAGCATGAGAACAAGAGGGATA 58.967 43.478 0.00 0.00 0.00 2.59
157 158 2.842496 TGAGCATGAGAACAAGAGGGAT 59.158 45.455 0.00 0.00 0.00 3.85
158 159 2.259917 TGAGCATGAGAACAAGAGGGA 58.740 47.619 0.00 0.00 0.00 4.20
159 160 2.775911 TGAGCATGAGAACAAGAGGG 57.224 50.000 0.00 0.00 0.00 4.30
160 161 4.763073 TGTATGAGCATGAGAACAAGAGG 58.237 43.478 0.00 0.00 0.00 3.69
161 162 5.873712 ACTTGTATGAGCATGAGAACAAGAG 59.126 40.000 21.53 6.24 44.03 2.85
162 163 5.640783 CACTTGTATGAGCATGAGAACAAGA 59.359 40.000 21.53 0.00 44.03 3.02
163 164 5.163784 CCACTTGTATGAGCATGAGAACAAG 60.164 44.000 16.47 16.47 45.76 3.16
164 165 4.696877 CCACTTGTATGAGCATGAGAACAA 59.303 41.667 0.00 0.00 0.00 2.83
165 166 4.256110 CCACTTGTATGAGCATGAGAACA 58.744 43.478 0.00 0.00 0.00 3.18
166 167 3.624861 CCCACTTGTATGAGCATGAGAAC 59.375 47.826 0.00 0.00 0.00 3.01
167 168 3.370846 CCCCACTTGTATGAGCATGAGAA 60.371 47.826 0.00 0.00 0.00 2.87
168 169 2.171237 CCCCACTTGTATGAGCATGAGA 59.829 50.000 0.00 0.00 0.00 3.27
169 170 2.171237 TCCCCACTTGTATGAGCATGAG 59.829 50.000 0.00 0.00 0.00 2.90
170 171 2.195727 TCCCCACTTGTATGAGCATGA 58.804 47.619 0.00 0.00 0.00 3.07
171 172 2.715749 TCCCCACTTGTATGAGCATG 57.284 50.000 0.00 0.00 0.00 4.06
172 173 2.092212 CCTTCCCCACTTGTATGAGCAT 60.092 50.000 0.00 0.00 0.00 3.79
173 174 1.281867 CCTTCCCCACTTGTATGAGCA 59.718 52.381 0.00 0.00 0.00 4.26
174 175 1.559682 TCCTTCCCCACTTGTATGAGC 59.440 52.381 0.00 0.00 0.00 4.26
175 176 2.420687 GCTCCTTCCCCACTTGTATGAG 60.421 54.545 0.00 0.00 0.00 2.90
176 177 1.559682 GCTCCTTCCCCACTTGTATGA 59.440 52.381 0.00 0.00 0.00 2.15
177 178 1.408822 GGCTCCTTCCCCACTTGTATG 60.409 57.143 0.00 0.00 0.00 2.39
178 179 0.919710 GGCTCCTTCCCCACTTGTAT 59.080 55.000 0.00 0.00 0.00 2.29
179 180 0.178873 AGGCTCCTTCCCCACTTGTA 60.179 55.000 0.00 0.00 0.00 2.41
180 181 1.464198 AGGCTCCTTCCCCACTTGT 60.464 57.895 0.00 0.00 0.00 3.16
181 182 1.301293 GAGGCTCCTTCCCCACTTG 59.699 63.158 2.15 0.00 0.00 3.16
182 183 1.925972 GGAGGCTCCTTCCCCACTT 60.926 63.158 26.44 0.00 32.53 3.16
183 184 2.285743 GGAGGCTCCTTCCCCACT 60.286 66.667 26.44 0.00 32.53 4.00
184 185 3.412408 GGGAGGCTCCTTCCCCAC 61.412 72.222 31.39 10.61 35.65 4.61
185 186 1.833055 TAAGGGAGGCTCCTTCCCCA 61.833 60.000 31.39 9.06 45.22 4.96
186 187 0.402126 ATAAGGGAGGCTCCTTCCCC 60.402 60.000 31.39 16.54 45.22 4.81
187 188 2.417719 TATAAGGGAGGCTCCTTCCC 57.582 55.000 31.39 17.15 45.22 3.97
188 189 3.974642 TCTTTATAAGGGAGGCTCCTTCC 59.025 47.826 31.39 16.23 45.22 3.46
189 190 4.041075 CCTCTTTATAAGGGAGGCTCCTTC 59.959 50.000 31.39 16.97 45.22 3.46
191 192 3.592865 CCTCTTTATAAGGGAGGCTCCT 58.407 50.000 31.39 16.58 39.87 3.69
197 198 5.163290 GGAGTTGGACCTCTTTATAAGGGAG 60.163 48.000 9.31 9.31 38.29 4.30
198 199 4.720273 GGAGTTGGACCTCTTTATAAGGGA 59.280 45.833 7.80 0.80 38.29 4.20
199 200 4.141459 GGGAGTTGGACCTCTTTATAAGGG 60.141 50.000 0.00 0.00 38.29 3.95
200 201 4.722279 AGGGAGTTGGACCTCTTTATAAGG 59.278 45.833 0.00 0.00 39.96 2.69
201 202 5.959583 AGGGAGTTGGACCTCTTTATAAG 57.040 43.478 0.00 0.00 28.88 1.73
210 211 3.277416 AGTTTAGAGGGAGTTGGACCT 57.723 47.619 0.00 0.00 40.54 3.85
211 212 3.118702 GCTAGTTTAGAGGGAGTTGGACC 60.119 52.174 0.00 0.00 0.00 4.46
212 213 3.514309 TGCTAGTTTAGAGGGAGTTGGAC 59.486 47.826 0.00 0.00 0.00 4.02
213 214 3.786553 TGCTAGTTTAGAGGGAGTTGGA 58.213 45.455 0.00 0.00 0.00 3.53
214 215 4.553330 TTGCTAGTTTAGAGGGAGTTGG 57.447 45.455 0.00 0.00 0.00 3.77
215 216 5.352569 CACATTGCTAGTTTAGAGGGAGTTG 59.647 44.000 0.00 0.00 0.00 3.16
216 217 5.491982 CACATTGCTAGTTTAGAGGGAGTT 58.508 41.667 0.00 0.00 0.00 3.01
217 218 4.080863 CCACATTGCTAGTTTAGAGGGAGT 60.081 45.833 0.00 0.00 0.00 3.85
218 219 4.446371 CCACATTGCTAGTTTAGAGGGAG 58.554 47.826 0.00 0.00 0.00 4.30
219 220 3.199946 CCCACATTGCTAGTTTAGAGGGA 59.800 47.826 0.00 0.00 34.49 4.20
220 221 3.199946 TCCCACATTGCTAGTTTAGAGGG 59.800 47.826 0.00 0.00 0.00 4.30
221 222 4.080863 AGTCCCACATTGCTAGTTTAGAGG 60.081 45.833 0.00 0.00 0.00 3.69
222 223 5.091261 AGTCCCACATTGCTAGTTTAGAG 57.909 43.478 0.00 0.00 0.00 2.43
223 224 6.614694 TTAGTCCCACATTGCTAGTTTAGA 57.385 37.500 0.00 0.00 0.00 2.10
224 225 6.879458 AGTTTAGTCCCACATTGCTAGTTTAG 59.121 38.462 0.00 0.00 0.00 1.85
225 226 6.775708 AGTTTAGTCCCACATTGCTAGTTTA 58.224 36.000 0.00 0.00 0.00 2.01
226 227 5.631119 AGTTTAGTCCCACATTGCTAGTTT 58.369 37.500 0.00 0.00 0.00 2.66
227 228 5.242795 AGTTTAGTCCCACATTGCTAGTT 57.757 39.130 0.00 0.00 0.00 2.24
228 229 4.910458 AGTTTAGTCCCACATTGCTAGT 57.090 40.909 0.00 0.00 0.00 2.57
229 230 6.879458 ACTAAAGTTTAGTCCCACATTGCTAG 59.121 38.462 20.34 0.00 0.00 3.42
230 231 6.775708 ACTAAAGTTTAGTCCCACATTGCTA 58.224 36.000 20.34 0.00 0.00 3.49
231 232 5.631119 ACTAAAGTTTAGTCCCACATTGCT 58.369 37.500 20.34 0.00 0.00 3.91
232 233 5.959618 ACTAAAGTTTAGTCCCACATTGC 57.040 39.130 20.34 0.00 0.00 3.56
233 234 9.886132 ATACTACTAAAGTTTAGTCCCACATTG 57.114 33.333 27.43 12.97 39.80 2.82
235 236 8.702819 GGATACTACTAAAGTTTAGTCCCACAT 58.297 37.037 27.43 16.00 39.80 3.21
236 237 7.124750 GGGATACTACTAAAGTTTAGTCCCACA 59.875 40.741 28.46 15.46 40.54 4.17
237 238 7.344093 AGGGATACTACTAAAGTTTAGTCCCAC 59.656 40.741 31.64 20.92 41.82 4.61
238 239 7.425003 AGGGATACTACTAAAGTTTAGTCCCA 58.575 38.462 31.64 20.25 41.82 4.37
239 240 7.911130 AGGGATACTACTAAAGTTTAGTCCC 57.089 40.000 27.26 27.26 40.82 4.46
240 241 7.710044 GCAAGGGATACTACTAAAGTTTAGTCC 59.290 40.741 27.43 21.43 39.80 3.85
241 242 7.710044 GGCAAGGGATACTACTAAAGTTTAGTC 59.290 40.741 27.43 14.96 39.80 2.59
242 243 7.402361 AGGCAAGGGATACTACTAAAGTTTAGT 59.598 37.037 26.93 26.93 39.80 2.24
243 244 7.793036 AGGCAAGGGATACTACTAAAGTTTAG 58.207 38.462 19.07 19.07 39.80 1.85
244 245 7.744678 AGGCAAGGGATACTACTAAAGTTTA 57.255 36.000 0.00 0.00 39.80 2.01
245 246 6.638021 AGGCAAGGGATACTACTAAAGTTT 57.362 37.500 0.00 0.00 39.80 2.66
246 247 6.415573 CAAGGCAAGGGATACTACTAAAGTT 58.584 40.000 0.00 0.00 39.80 2.66
247 248 5.629366 GCAAGGCAAGGGATACTACTAAAGT 60.629 44.000 0.00 0.00 42.62 2.66
248 249 4.816925 GCAAGGCAAGGGATACTACTAAAG 59.183 45.833 0.00 0.00 0.00 1.85
249 250 4.226394 TGCAAGGCAAGGGATACTACTAAA 59.774 41.667 0.00 0.00 34.76 1.85
250 251 3.778075 TGCAAGGCAAGGGATACTACTAA 59.222 43.478 0.00 0.00 34.76 2.24
251 252 3.134081 GTGCAAGGCAAGGGATACTACTA 59.866 47.826 0.00 0.00 41.47 1.82
252 253 2.092914 GTGCAAGGCAAGGGATACTACT 60.093 50.000 0.00 0.00 41.47 2.57
253 254 2.289565 GTGCAAGGCAAGGGATACTAC 58.710 52.381 0.00 0.00 41.47 2.73
254 255 1.912731 TGTGCAAGGCAAGGGATACTA 59.087 47.619 0.00 0.00 41.47 1.82
255 256 0.698238 TGTGCAAGGCAAGGGATACT 59.302 50.000 0.00 0.00 41.47 2.12
256 257 1.544724 TTGTGCAAGGCAAGGGATAC 58.455 50.000 0.00 0.00 41.47 2.24
257 258 2.300956 TTTGTGCAAGGCAAGGGATA 57.699 45.000 0.00 0.00 41.47 2.59
258 259 1.276989 CATTTGTGCAAGGCAAGGGAT 59.723 47.619 0.00 0.00 41.47 3.85
259 260 0.680618 CATTTGTGCAAGGCAAGGGA 59.319 50.000 0.00 0.00 41.47 4.20
260 261 0.320946 CCATTTGTGCAAGGCAAGGG 60.321 55.000 0.00 0.00 41.47 3.95
261 262 0.320946 CCCATTTGTGCAAGGCAAGG 60.321 55.000 0.00 0.00 41.47 3.61
262 263 0.952010 GCCCATTTGTGCAAGGCAAG 60.952 55.000 8.27 0.00 41.47 4.01
263 264 1.071128 GCCCATTTGTGCAAGGCAA 59.929 52.632 8.27 0.00 41.47 4.52
264 265 0.541530 TAGCCCATTTGTGCAAGGCA 60.542 50.000 13.63 0.00 46.35 4.75
265 266 0.607620 TTAGCCCATTTGTGCAAGGC 59.392 50.000 5.78 5.78 44.20 4.35
266 267 1.895131 ACTTAGCCCATTTGTGCAAGG 59.105 47.619 0.00 0.00 0.00 3.61
267 268 2.353011 CCACTTAGCCCATTTGTGCAAG 60.353 50.000 0.00 0.00 0.00 4.01
268 269 1.617850 CCACTTAGCCCATTTGTGCAA 59.382 47.619 0.00 0.00 0.00 4.08
269 270 1.255882 CCACTTAGCCCATTTGTGCA 58.744 50.000 0.00 0.00 0.00 4.57
270 271 0.532115 CCCACTTAGCCCATTTGTGC 59.468 55.000 0.00 0.00 0.00 4.57
271 272 0.532115 GCCCACTTAGCCCATTTGTG 59.468 55.000 0.00 0.00 0.00 3.33
272 273 0.614697 GGCCCACTTAGCCCATTTGT 60.615 55.000 0.00 0.00 45.16 2.83
273 274 2.201927 GGCCCACTTAGCCCATTTG 58.798 57.895 0.00 0.00 45.16 2.32
274 275 4.785575 GGCCCACTTAGCCCATTT 57.214 55.556 0.00 0.00 45.16 2.32
280 281 1.723288 ATCCTAGAGGCCCACTTAGC 58.277 55.000 0.00 0.00 34.44 3.09
281 282 6.441088 AATAAATCCTAGAGGCCCACTTAG 57.559 41.667 0.00 0.00 34.44 2.18
282 283 6.500751 CCTAATAAATCCTAGAGGCCCACTTA 59.499 42.308 0.00 0.00 34.44 2.24
283 284 5.310857 CCTAATAAATCCTAGAGGCCCACTT 59.689 44.000 0.00 0.00 34.44 3.16
284 285 4.846940 CCTAATAAATCCTAGAGGCCCACT 59.153 45.833 0.00 1.43 34.44 4.00
285 286 4.844655 TCCTAATAAATCCTAGAGGCCCAC 59.155 45.833 0.00 0.00 34.44 4.61
286 287 5.101254 TCCTAATAAATCCTAGAGGCCCA 57.899 43.478 0.00 0.00 34.44 5.36
287 288 6.644308 ATTCCTAATAAATCCTAGAGGCCC 57.356 41.667 0.00 0.00 34.44 5.80
288 289 8.387039 AGAAATTCCTAATAAATCCTAGAGGCC 58.613 37.037 0.00 0.00 34.44 5.19
289 290 9.225436 CAGAAATTCCTAATAAATCCTAGAGGC 57.775 37.037 0.00 0.00 34.44 4.70
304 305 9.131791 GCCCAATAACTATTTCAGAAATTCCTA 57.868 33.333 13.71 3.88 32.38 2.94
305 306 7.841222 AGCCCAATAACTATTTCAGAAATTCCT 59.159 33.333 13.71 1.87 32.38 3.36
306 307 7.922811 CAGCCCAATAACTATTTCAGAAATTCC 59.077 37.037 13.71 0.00 32.38 3.01
307 308 7.436376 GCAGCCCAATAACTATTTCAGAAATTC 59.564 37.037 13.71 0.00 32.38 2.17
308 309 7.267857 GCAGCCCAATAACTATTTCAGAAATT 58.732 34.615 13.71 0.00 32.38 1.82
309 310 6.183360 GGCAGCCCAATAACTATTTCAGAAAT 60.183 38.462 13.06 13.06 34.90 2.17
310 311 5.127031 GGCAGCCCAATAACTATTTCAGAAA 59.873 40.000 0.00 0.00 0.00 2.52
311 312 4.644685 GGCAGCCCAATAACTATTTCAGAA 59.355 41.667 0.00 0.00 0.00 3.02
312 313 4.207165 GGCAGCCCAATAACTATTTCAGA 58.793 43.478 0.00 0.00 0.00 3.27
313 314 3.319122 GGGCAGCCCAATAACTATTTCAG 59.681 47.826 27.33 0.00 44.65 3.02
314 315 3.295973 GGGCAGCCCAATAACTATTTCA 58.704 45.455 27.33 0.00 44.65 2.69
327 328 1.068121 AGTCTATATTGGGGCAGCCC 58.932 55.000 24.23 24.23 44.51 5.19
328 329 4.367039 TTTAGTCTATATTGGGGCAGCC 57.633 45.455 1.26 1.26 0.00 4.85
329 330 5.416013 GGAATTTAGTCTATATTGGGGCAGC 59.584 44.000 0.80 0.00 0.00 5.25
330 331 6.542821 TGGAATTTAGTCTATATTGGGGCAG 58.457 40.000 0.80 0.00 0.00 4.85
331 332 6.523035 TGGAATTTAGTCTATATTGGGGCA 57.477 37.500 0.80 0.00 0.00 5.36
332 333 5.416013 GCTGGAATTTAGTCTATATTGGGGC 59.584 44.000 0.80 0.00 0.00 5.80
333 334 6.431234 GTGCTGGAATTTAGTCTATATTGGGG 59.569 42.308 0.80 0.00 0.00 4.96
334 335 7.227156 AGTGCTGGAATTTAGTCTATATTGGG 58.773 38.462 0.80 0.00 0.00 4.12
335 336 8.682936 AAGTGCTGGAATTTAGTCTATATTGG 57.317 34.615 0.80 0.00 0.00 3.16
339 340 9.601217 GAGAAAAGTGCTGGAATTTAGTCTATA 57.399 33.333 0.00 0.00 0.00 1.31
340 341 7.554476 GGAGAAAAGTGCTGGAATTTAGTCTAT 59.446 37.037 0.00 0.00 0.00 1.98
341 342 6.879458 GGAGAAAAGTGCTGGAATTTAGTCTA 59.121 38.462 0.00 0.00 0.00 2.59
342 343 5.707764 GGAGAAAAGTGCTGGAATTTAGTCT 59.292 40.000 0.00 0.00 0.00 3.24
343 344 5.707764 AGGAGAAAAGTGCTGGAATTTAGTC 59.292 40.000 0.00 0.00 0.00 2.59
344 345 5.635120 AGGAGAAAAGTGCTGGAATTTAGT 58.365 37.500 0.00 0.00 0.00 2.24
345 346 6.581171 AAGGAGAAAAGTGCTGGAATTTAG 57.419 37.500 0.00 0.00 0.00 1.85
346 347 8.472007 TTTAAGGAGAAAAGTGCTGGAATTTA 57.528 30.769 0.00 0.00 0.00 1.40
347 348 6.976934 TTAAGGAGAAAAGTGCTGGAATTT 57.023 33.333 0.00 0.00 0.00 1.82
348 349 6.976934 TTTAAGGAGAAAAGTGCTGGAATT 57.023 33.333 0.00 0.00 0.00 2.17
349 350 6.721208 TGATTTAAGGAGAAAAGTGCTGGAAT 59.279 34.615 0.00 0.00 0.00 3.01
350 351 6.068010 TGATTTAAGGAGAAAAGTGCTGGAA 58.932 36.000 0.00 0.00 0.00 3.53
351 352 5.630121 TGATTTAAGGAGAAAAGTGCTGGA 58.370 37.500 0.00 0.00 0.00 3.86
352 353 5.964958 TGATTTAAGGAGAAAAGTGCTGG 57.035 39.130 0.00 0.00 0.00 4.85
353 354 6.309737 GCAATGATTTAAGGAGAAAAGTGCTG 59.690 38.462 0.00 0.00 0.00 4.41
354 355 6.015180 TGCAATGATTTAAGGAGAAAAGTGCT 60.015 34.615 0.00 0.00 0.00 4.40
355 356 6.158598 TGCAATGATTTAAGGAGAAAAGTGC 58.841 36.000 0.00 0.00 0.00 4.40
361 362 9.353431 TGCTTATATGCAATGATTTAAGGAGAA 57.647 29.630 10.65 0.00 40.29 2.87
362 363 8.922931 TGCTTATATGCAATGATTTAAGGAGA 57.077 30.769 10.65 0.00 40.29 3.71
376 377 7.273164 CGAACTCAACAAATTTGCTTATATGCA 59.727 33.333 18.12 9.11 41.65 3.96
377 378 7.253750 CCGAACTCAACAAATTTGCTTATATGC 60.254 37.037 18.12 3.70 0.00 3.14
378 379 7.967854 TCCGAACTCAACAAATTTGCTTATATG 59.032 33.333 18.12 7.93 0.00 1.78
379 380 7.968405 GTCCGAACTCAACAAATTTGCTTATAT 59.032 33.333 18.12 1.15 0.00 0.86
380 381 7.302524 GTCCGAACTCAACAAATTTGCTTATA 58.697 34.615 18.12 0.00 0.00 0.98
381 382 6.149633 GTCCGAACTCAACAAATTTGCTTAT 58.850 36.000 18.12 0.08 0.00 1.73
382 383 5.516090 GTCCGAACTCAACAAATTTGCTTA 58.484 37.500 18.12 2.71 0.00 3.09
383 384 4.359706 GTCCGAACTCAACAAATTTGCTT 58.640 39.130 18.12 8.82 0.00 3.91
384 385 3.548014 CGTCCGAACTCAACAAATTTGCT 60.548 43.478 18.12 2.78 0.00 3.91
385 386 2.719046 CGTCCGAACTCAACAAATTTGC 59.281 45.455 18.12 0.00 0.00 3.68
386 387 2.719046 GCGTCCGAACTCAACAAATTTG 59.281 45.455 16.67 16.67 0.00 2.32
387 388 2.616842 AGCGTCCGAACTCAACAAATTT 59.383 40.909 0.00 0.00 0.00 1.82
388 389 2.032030 CAGCGTCCGAACTCAACAAATT 60.032 45.455 0.00 0.00 0.00 1.82
389 390 1.531149 CAGCGTCCGAACTCAACAAAT 59.469 47.619 0.00 0.00 0.00 2.32
390 391 0.934496 CAGCGTCCGAACTCAACAAA 59.066 50.000 0.00 0.00 0.00 2.83
391 392 0.103390 TCAGCGTCCGAACTCAACAA 59.897 50.000 0.00 0.00 0.00 2.83
392 393 0.103390 TTCAGCGTCCGAACTCAACA 59.897 50.000 0.00 0.00 0.00 3.33
393 394 1.429463 ATTCAGCGTCCGAACTCAAC 58.571 50.000 0.00 0.00 0.00 3.18
394 395 2.163818 AATTCAGCGTCCGAACTCAA 57.836 45.000 0.00 0.00 0.00 3.02
395 396 2.230508 AGTAATTCAGCGTCCGAACTCA 59.769 45.455 0.00 0.00 0.00 3.41
396 397 2.853003 GAGTAATTCAGCGTCCGAACTC 59.147 50.000 0.00 0.00 0.00 3.01
397 398 2.416972 GGAGTAATTCAGCGTCCGAACT 60.417 50.000 0.00 0.00 0.00 3.01
398 399 1.925185 GGAGTAATTCAGCGTCCGAAC 59.075 52.381 0.00 0.00 0.00 3.95
399 400 1.134907 GGGAGTAATTCAGCGTCCGAA 60.135 52.381 0.00 0.00 0.00 4.30
400 401 0.458669 GGGAGTAATTCAGCGTCCGA 59.541 55.000 0.00 0.00 0.00 4.55
401 402 0.174845 TGGGAGTAATTCAGCGTCCG 59.825 55.000 0.00 0.00 0.00 4.79
402 403 1.207329 AGTGGGAGTAATTCAGCGTCC 59.793 52.381 0.00 0.00 0.00 4.79
403 404 2.674796 AGTGGGAGTAATTCAGCGTC 57.325 50.000 0.00 0.00 0.00 5.19
404 405 3.767673 TCTTAGTGGGAGTAATTCAGCGT 59.232 43.478 0.00 0.00 0.00 5.07
405 406 4.386867 TCTTAGTGGGAGTAATTCAGCG 57.613 45.455 0.00 0.00 0.00 5.18
406 407 4.567159 CGTTCTTAGTGGGAGTAATTCAGC 59.433 45.833 0.00 0.00 0.00 4.26
407 408 5.109903 CCGTTCTTAGTGGGAGTAATTCAG 58.890 45.833 0.00 0.00 0.00 3.02
408 409 4.529377 ACCGTTCTTAGTGGGAGTAATTCA 59.471 41.667 0.00 0.00 0.00 2.57
409 410 5.082251 ACCGTTCTTAGTGGGAGTAATTC 57.918 43.478 0.00 0.00 0.00 2.17
410 411 4.776308 AGACCGTTCTTAGTGGGAGTAATT 59.224 41.667 0.00 0.00 0.00 1.40
411 412 4.351127 AGACCGTTCTTAGTGGGAGTAAT 58.649 43.478 0.00 0.00 0.00 1.89
412 413 3.771216 AGACCGTTCTTAGTGGGAGTAA 58.229 45.455 0.00 0.00 0.00 2.24
413 414 3.446442 AGACCGTTCTTAGTGGGAGTA 57.554 47.619 0.00 0.00 0.00 2.59
414 415 2.305858 AGACCGTTCTTAGTGGGAGT 57.694 50.000 0.00 0.00 0.00 3.85
415 416 4.220163 ACTTTAGACCGTTCTTAGTGGGAG 59.780 45.833 0.00 0.00 32.75 4.30
416 417 4.154942 ACTTTAGACCGTTCTTAGTGGGA 58.845 43.478 0.00 0.00 32.75 4.37
417 418 4.532314 ACTTTAGACCGTTCTTAGTGGG 57.468 45.455 0.00 0.00 32.75 4.61
418 419 6.264841 ACTACTTTAGACCGTTCTTAGTGG 57.735 41.667 7.42 7.05 33.55 4.00
419 420 6.585322 CCAACTACTTTAGACCGTTCTTAGTG 59.415 42.308 7.42 2.35 31.50 2.74
420 421 6.294955 CCCAACTACTTTAGACCGTTCTTAGT 60.295 42.308 0.00 0.00 32.90 2.24
421 422 6.098017 CCCAACTACTTTAGACCGTTCTTAG 58.902 44.000 0.00 0.00 32.75 2.18
422 423 5.567423 GCCCAACTACTTTAGACCGTTCTTA 60.567 44.000 0.00 0.00 32.75 2.10
423 424 4.801914 GCCCAACTACTTTAGACCGTTCTT 60.802 45.833 0.00 0.00 32.75 2.52
424 425 3.306571 GCCCAACTACTTTAGACCGTTCT 60.307 47.826 0.00 0.00 35.66 3.01
425 426 2.998670 GCCCAACTACTTTAGACCGTTC 59.001 50.000 0.00 0.00 0.00 3.95
426 427 2.611224 CGCCCAACTACTTTAGACCGTT 60.611 50.000 0.00 0.00 0.00 4.44
427 428 1.067354 CGCCCAACTACTTTAGACCGT 60.067 52.381 0.00 0.00 0.00 4.83
428 429 1.636988 CGCCCAACTACTTTAGACCG 58.363 55.000 0.00 0.00 0.00 4.79
429 430 2.010544 GCCGCCCAACTACTTTAGACC 61.011 57.143 0.00 0.00 0.00 3.85
430 431 1.366679 GCCGCCCAACTACTTTAGAC 58.633 55.000 0.00 0.00 0.00 2.59
431 432 0.108520 CGCCGCCCAACTACTTTAGA 60.109 55.000 0.00 0.00 0.00 2.10
432 433 1.087771 CCGCCGCCCAACTACTTTAG 61.088 60.000 0.00 0.00 0.00 1.85
433 434 1.078988 CCGCCGCCCAACTACTTTA 60.079 57.895 0.00 0.00 0.00 1.85
434 435 2.359478 CCGCCGCCCAACTACTTT 60.359 61.111 0.00 0.00 0.00 2.66
435 436 3.310860 CTCCGCCGCCCAACTACTT 62.311 63.158 0.00 0.00 0.00 2.24
436 437 3.771160 CTCCGCCGCCCAACTACT 61.771 66.667 0.00 0.00 0.00 2.57
437 438 4.078516 ACTCCGCCGCCCAACTAC 62.079 66.667 0.00 0.00 0.00 2.73
438 439 4.077184 CACTCCGCCGCCCAACTA 62.077 66.667 0.00 0.00 0.00 2.24
445 446 4.070552 AAGACCTCACTCCGCCGC 62.071 66.667 0.00 0.00 0.00 6.53
446 447 2.125912 CAAGACCTCACTCCGCCG 60.126 66.667 0.00 0.00 0.00 6.46
447 448 2.435059 GCAAGACCTCACTCCGCC 60.435 66.667 0.00 0.00 0.00 6.13
448 449 2.811317 CGCAAGACCTCACTCCGC 60.811 66.667 0.00 0.00 43.02 5.54
449 450 1.153939 CTCGCAAGACCTCACTCCG 60.154 63.158 0.00 0.00 45.01 4.63
450 451 0.318762 AACTCGCAAGACCTCACTCC 59.681 55.000 0.00 0.00 45.01 3.85
451 452 1.269831 ACAACTCGCAAGACCTCACTC 60.270 52.381 0.00 0.00 45.01 3.51
452 453 0.753262 ACAACTCGCAAGACCTCACT 59.247 50.000 0.00 0.00 45.01 3.41
453 454 1.261619 CAACAACTCGCAAGACCTCAC 59.738 52.381 0.00 0.00 45.01 3.51
454 455 1.581934 CAACAACTCGCAAGACCTCA 58.418 50.000 0.00 0.00 45.01 3.86
455 456 0.868406 CCAACAACTCGCAAGACCTC 59.132 55.000 0.00 0.00 45.01 3.85
456 457 0.468226 TCCAACAACTCGCAAGACCT 59.532 50.000 0.00 0.00 45.01 3.85
457 458 1.002792 GTTCCAACAACTCGCAAGACC 60.003 52.381 0.00 0.00 45.01 3.85
458 459 1.668751 TGTTCCAACAACTCGCAAGAC 59.331 47.619 0.00 0.00 37.45 3.01
459 460 2.031258 TGTTCCAACAACTCGCAAGA 57.969 45.000 0.00 0.00 39.36 3.02
460 461 2.842208 TTGTTCCAACAACTCGCAAG 57.158 45.000 0.55 0.00 43.45 4.01
468 469 5.475220 ACGTATCCATGATTTGTTCCAACAA 59.525 36.000 0.55 0.55 46.35 2.83
469 470 5.007034 ACGTATCCATGATTTGTTCCAACA 58.993 37.500 0.00 0.00 37.08 3.33
470 471 5.560966 ACGTATCCATGATTTGTTCCAAC 57.439 39.130 0.00 0.00 0.00 3.77
471 472 6.582677 AAACGTATCCATGATTTGTTCCAA 57.417 33.333 0.00 0.00 0.00 3.53
472 473 7.201776 CCATAAACGTATCCATGATTTGTTCCA 60.202 37.037 0.00 0.00 0.00 3.53
473 474 7.138736 CCATAAACGTATCCATGATTTGTTCC 58.861 38.462 0.00 0.00 0.00 3.62
474 475 7.138736 CCCATAAACGTATCCATGATTTGTTC 58.861 38.462 0.00 0.00 0.00 3.18
475 476 6.460953 GCCCATAAACGTATCCATGATTTGTT 60.461 38.462 0.00 0.00 0.00 2.83
476 477 5.009610 GCCCATAAACGTATCCATGATTTGT 59.990 40.000 0.00 0.00 0.00 2.83
477 478 5.241506 AGCCCATAAACGTATCCATGATTTG 59.758 40.000 0.00 0.00 0.00 2.32
478 479 5.241506 CAGCCCATAAACGTATCCATGATTT 59.758 40.000 0.00 0.00 0.00 2.17
479 480 4.761739 CAGCCCATAAACGTATCCATGATT 59.238 41.667 0.00 0.00 0.00 2.57
480 481 4.326826 CAGCCCATAAACGTATCCATGAT 58.673 43.478 0.00 0.00 0.00 2.45
481 482 3.495983 CCAGCCCATAAACGTATCCATGA 60.496 47.826 0.00 0.00 0.00 3.07
482 483 2.813754 CCAGCCCATAAACGTATCCATG 59.186 50.000 0.00 0.00 0.00 3.66
483 484 2.224769 CCCAGCCCATAAACGTATCCAT 60.225 50.000 0.00 0.00 0.00 3.41
484 485 1.142060 CCCAGCCCATAAACGTATCCA 59.858 52.381 0.00 0.00 0.00 3.41
485 486 1.142262 ACCCAGCCCATAAACGTATCC 59.858 52.381 0.00 0.00 0.00 2.59
486 487 2.218603 CACCCAGCCCATAAACGTATC 58.781 52.381 0.00 0.00 0.00 2.24
487 488 1.562475 ACACCCAGCCCATAAACGTAT 59.438 47.619 0.00 0.00 0.00 3.06
488 489 0.985760 ACACCCAGCCCATAAACGTA 59.014 50.000 0.00 0.00 0.00 3.57
489 490 0.985760 TACACCCAGCCCATAAACGT 59.014 50.000 0.00 0.00 0.00 3.99
490 491 2.341846 ATACACCCAGCCCATAAACG 57.658 50.000 0.00 0.00 0.00 3.60
491 492 5.631119 AGATAATACACCCAGCCCATAAAC 58.369 41.667 0.00 0.00 0.00 2.01
492 493 5.371176 TGAGATAATACACCCAGCCCATAAA 59.629 40.000 0.00 0.00 0.00 1.40
493 494 4.910913 TGAGATAATACACCCAGCCCATAA 59.089 41.667 0.00 0.00 0.00 1.90
494 495 4.498493 TGAGATAATACACCCAGCCCATA 58.502 43.478 0.00 0.00 0.00 2.74
495 496 3.326521 TGAGATAATACACCCAGCCCAT 58.673 45.455 0.00 0.00 0.00 4.00
496 497 2.770447 TGAGATAATACACCCAGCCCA 58.230 47.619 0.00 0.00 0.00 5.36
497 498 3.857157 TTGAGATAATACACCCAGCCC 57.143 47.619 0.00 0.00 0.00 5.19
498 499 4.523083 TGTTTGAGATAATACACCCAGCC 58.477 43.478 0.00 0.00 0.00 4.85
499 500 6.509418 TTTGTTTGAGATAATACACCCAGC 57.491 37.500 0.00 0.00 0.00 4.85
500 501 9.927668 AAAATTTGTTTGAGATAATACACCCAG 57.072 29.630 0.00 0.00 0.00 4.45
512 513 9.859427 CTATCTGCCATAAAAATTTGTTTGAGA 57.141 29.630 0.75 0.00 0.00 3.27
513 514 9.859427 TCTATCTGCCATAAAAATTTGTTTGAG 57.141 29.630 0.75 0.00 0.00 3.02
516 517 9.822185 GGATCTATCTGCCATAAAAATTTGTTT 57.178 29.630 0.00 0.00 0.00 2.83
517 518 9.205513 AGGATCTATCTGCCATAAAAATTTGTT 57.794 29.630 0.00 0.00 0.00 2.83
518 519 8.636213 CAGGATCTATCTGCCATAAAAATTTGT 58.364 33.333 0.00 0.00 0.00 2.83
519 520 8.636213 ACAGGATCTATCTGCCATAAAAATTTG 58.364 33.333 0.00 0.00 35.78 2.32
520 521 8.773033 ACAGGATCTATCTGCCATAAAAATTT 57.227 30.769 0.00 0.00 35.78 1.82
521 522 9.866655 TTACAGGATCTATCTGCCATAAAAATT 57.133 29.630 0.00 0.00 35.78 1.82
522 523 9.866655 TTTACAGGATCTATCTGCCATAAAAAT 57.133 29.630 0.00 0.00 35.78 1.82
523 524 9.693739 TTTTACAGGATCTATCTGCCATAAAAA 57.306 29.630 0.00 0.00 35.78 1.94
524 525 9.120538 GTTTTACAGGATCTATCTGCCATAAAA 57.879 33.333 0.00 0.00 35.78 1.52
525 526 7.441157 CGTTTTACAGGATCTATCTGCCATAAA 59.559 37.037 0.00 0.00 35.78 1.40
526 527 6.929049 CGTTTTACAGGATCTATCTGCCATAA 59.071 38.462 0.00 0.00 35.78 1.90
527 528 6.266786 TCGTTTTACAGGATCTATCTGCCATA 59.733 38.462 0.00 0.00 35.78 2.74
528 529 5.070446 TCGTTTTACAGGATCTATCTGCCAT 59.930 40.000 0.00 0.00 35.78 4.40
529 530 4.404394 TCGTTTTACAGGATCTATCTGCCA 59.596 41.667 0.00 0.00 35.78 4.92
530 531 4.745620 GTCGTTTTACAGGATCTATCTGCC 59.254 45.833 0.00 0.00 35.78 4.85
531 532 5.593010 AGTCGTTTTACAGGATCTATCTGC 58.407 41.667 0.00 0.00 35.78 4.26
532 533 6.796426 TGAGTCGTTTTACAGGATCTATCTG 58.204 40.000 0.00 0.00 38.16 2.90
533 534 7.406031 TTGAGTCGTTTTACAGGATCTATCT 57.594 36.000 0.00 0.00 0.00 1.98
534 535 7.921214 TGATTGAGTCGTTTTACAGGATCTATC 59.079 37.037 0.00 0.00 0.00 2.08
535 536 7.782049 TGATTGAGTCGTTTTACAGGATCTAT 58.218 34.615 0.00 0.00 0.00 1.98
536 537 7.093902 ACTGATTGAGTCGTTTTACAGGATCTA 60.094 37.037 0.00 0.00 0.00 1.98
537 538 6.037786 TGATTGAGTCGTTTTACAGGATCT 57.962 37.500 0.00 0.00 0.00 2.75
538 539 5.869888 ACTGATTGAGTCGTTTTACAGGATC 59.130 40.000 0.00 0.00 0.00 3.36
539 540 5.794894 ACTGATTGAGTCGTTTTACAGGAT 58.205 37.500 0.00 0.00 0.00 3.24
540 541 5.209818 ACTGATTGAGTCGTTTTACAGGA 57.790 39.130 0.00 0.00 0.00 3.86
541 542 5.517037 GACTGATTGAGTCGTTTTACAGG 57.483 43.478 0.00 0.00 41.91 4.00
568 569 2.305927 ACAATGGGTGACACCTTAGGAG 59.694 50.000 23.72 11.61 38.64 3.69
572 573 3.653836 AGGTTACAATGGGTGACACCTTA 59.346 43.478 23.72 13.74 39.02 2.69
573 574 2.445525 AGGTTACAATGGGTGACACCTT 59.554 45.455 23.72 8.89 39.02 3.50
622 623 1.003118 CCTTCGGGGTCTGAATGTTGA 59.997 52.381 0.00 0.00 0.00 3.18
637 638 2.032620 AGTGCCACCTAGATACCTTCG 58.967 52.381 0.00 0.00 0.00 3.79
655 656 2.159310 GCTGACTAAGATGACAGCGAGT 60.159 50.000 0.00 1.53 43.11 4.18
750 752 4.901250 ACTCACCAATTTCATTTCCAAGGT 59.099 37.500 0.00 0.00 0.00 3.50
766 768 3.680786 CGGGCTGACGACTCACCA 61.681 66.667 0.00 0.00 35.47 4.17
845 849 4.995487 GGGGTAGGCGATTTATTAGAGTTG 59.005 45.833 0.00 0.00 0.00 3.16
860 864 3.613689 GTCGATCCGGGGGTAGGC 61.614 72.222 0.00 0.00 0.00 3.93
863 867 1.963464 GCTTTGTCGATCCGGGGGTA 61.963 60.000 0.00 0.00 0.00 3.69
942 946 0.318762 GAGAGAGTGGTGGTGGTGTC 59.681 60.000 0.00 0.00 0.00 3.67
984 991 0.254747 CCATTCCGGCTAGGGTTTCA 59.745 55.000 0.00 0.00 41.52 2.69
996 1003 0.395586 TGGATTTGGGCTCCATTCCG 60.396 55.000 13.93 0.00 38.35 4.30
1605 1618 6.403878 ACTTAAATCCGCTGTAACATACTGT 58.596 36.000 0.00 0.00 0.00 3.55
1637 1650 6.039270 AGCACTAAATCAACAGCACAAACTTA 59.961 34.615 0.00 0.00 0.00 2.24
1641 1654 4.580167 AGAGCACTAAATCAACAGCACAAA 59.420 37.500 0.00 0.00 0.00 2.83
1667 1680 3.119316 TCAGCGGTGAACAAACAAACATT 60.119 39.130 16.20 0.00 0.00 2.71
1749 1762 2.160721 ACCTAGCCGGATTCTTCTCA 57.839 50.000 5.05 0.00 36.31 3.27
1860 1873 4.173036 ACCATTTCACTGCAAATTACGG 57.827 40.909 0.00 0.00 0.00 4.02
1901 1915 5.362105 AAATACAACGGGGTCATAGCTAA 57.638 39.130 0.00 0.00 0.00 3.09
1904 1918 4.514066 CCTAAAATACAACGGGGTCATAGC 59.486 45.833 0.00 0.00 0.00 2.97
1962 1976 3.692593 AGTTATACGAACATTTGGCCCAC 59.307 43.478 0.00 0.00 0.00 4.61
2063 2077 8.772705 CCAAAGAAGCATGTATCTCTAATTCTC 58.227 37.037 0.00 0.00 0.00 2.87
2067 2081 9.553064 CTTACCAAAGAAGCATGTATCTCTAAT 57.447 33.333 0.00 0.00 34.37 1.73
2068 2082 8.540388 ACTTACCAAAGAAGCATGTATCTCTAA 58.460 33.333 0.00 0.00 36.50 2.10
2076 2102 7.394816 AGTATACACTTACCAAAGAAGCATGT 58.605 34.615 5.50 0.00 36.50 3.21
2136 2162 7.850982 GTCACATATGCAGGACTAAATTTTACG 59.149 37.037 1.58 0.00 0.00 3.18
2137 2163 8.893727 AGTCACATATGCAGGACTAAATTTTAC 58.106 33.333 18.42 0.00 38.74 2.01
2138 2164 8.892723 CAGTCACATATGCAGGACTAAATTTTA 58.107 33.333 19.07 0.00 38.48 1.52
2139 2165 7.394359 ACAGTCACATATGCAGGACTAAATTTT 59.606 33.333 19.07 0.94 38.48 1.82
2150 2176 4.382345 TCAGAGACAGTCACATATGCAG 57.618 45.455 1.58 0.00 0.00 4.41
2183 2209 4.360951 AACTTCAATTTCGGTCCCTACA 57.639 40.909 0.00 0.00 0.00 2.74
2192 2218 9.833894 CATTGAACTAACAAAACTTCAATTTCG 57.166 29.630 0.00 0.00 39.99 3.46
2247 2273 2.107031 TCCCCATTCCTATGATGTGCTG 59.893 50.000 0.00 0.00 33.37 4.41
2249 2275 2.957402 TCCCCATTCCTATGATGTGC 57.043 50.000 0.00 0.00 33.37 4.57
2276 2302 4.843220 AGAAAATGTCAGGAGTTTGCAG 57.157 40.909 0.00 0.00 0.00 4.41
2333 2359 1.475213 GCCCCAAGGAATAGAACCTCG 60.475 57.143 0.00 0.00 36.67 4.63
2348 2375 2.757894 TCTTTAACCAAAGTGCCCCA 57.242 45.000 0.00 0.00 41.66 4.96
2349 2376 2.233676 CCATCTTTAACCAAAGTGCCCC 59.766 50.000 0.00 0.00 41.66 5.80
2387 2421 8.780249 GTTTCAAATAAGTTAGTTGGTAGCTGA 58.220 33.333 19.76 0.00 34.75 4.26
2428 2462 8.984764 CGCAAAGCTACTTGGTGTATAAATATA 58.015 33.333 0.52 0.00 0.00 0.86
2429 2463 7.497909 ACGCAAAGCTACTTGGTGTATAAATAT 59.502 33.333 0.00 0.00 36.50 1.28
2430 2464 6.819649 ACGCAAAGCTACTTGGTGTATAAATA 59.180 34.615 0.00 0.00 36.50 1.40
2431 2465 5.646360 ACGCAAAGCTACTTGGTGTATAAAT 59.354 36.000 0.00 0.00 36.50 1.40
2438 2472 0.944386 ACACGCAAAGCTACTTGGTG 59.056 50.000 13.65 13.65 35.42 4.17
2444 2478 2.076863 AGAATGGACACGCAAAGCTAC 58.923 47.619 0.00 0.00 0.00 3.58
2491 2688 1.210234 TCACAGTGGCTGGATACCATG 59.790 52.381 0.00 0.00 39.95 3.66
2504 2701 4.353737 CACAACAAGTCCAATTCACAGTG 58.646 43.478 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.