Multiple sequence alignment - TraesCS7B01G134700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G134700 chr7B 100.000 7062 0 0 1 7062 164944181 164951242 0.000000e+00 13042.0
1 TraesCS7B01G134700 chr7D 92.276 3418 179 44 732 4130 199828468 199831819 0.000000e+00 4771.0
2 TraesCS7B01G134700 chr7D 91.704 663 42 7 6404 7062 199832480 199833133 0.000000e+00 907.0
3 TraesCS7B01G134700 chr7D 87.931 696 68 9 3 694 199822166 199822849 0.000000e+00 806.0
4 TraesCS7B01G134700 chr7D 93.333 495 30 3 5750 6241 199831819 199832313 0.000000e+00 728.0
5 TraesCS7B01G134700 chr7A 92.213 2427 127 29 1716 4127 211794490 211796869 0.000000e+00 3378.0
6 TraesCS7B01G134700 chr7A 89.729 1587 119 20 80 1653 211792939 211794494 0.000000e+00 1988.0
7 TraesCS7B01G134700 chr7A 90.059 845 42 14 4132 4938 434751816 434750976 0.000000e+00 1057.0
8 TraesCS7B01G134700 chr7A 88.247 519 29 13 6557 7062 211798360 211798859 6.100000e-165 592.0
9 TraesCS7B01G134700 chr7A 87.209 516 43 14 5081 5586 706781503 706782005 3.700000e-157 566.0
10 TraesCS7B01G134700 chr7A 90.094 424 32 8 5827 6242 211796973 211797394 6.230000e-150 542.0
11 TraesCS7B01G134700 chr7A 87.526 473 42 8 5204 5663 434745860 434745392 1.350000e-146 531.0
12 TraesCS7B01G134700 chr7A 91.824 159 8 3 4372 4529 706781115 706781269 4.290000e-52 217.0
13 TraesCS7B01G134700 chr7A 90.551 127 11 1 4128 4254 706780995 706781120 4.380000e-37 167.0
14 TraesCS7B01G134700 chr7A 82.039 206 7 3 4949 5154 434751008 434750833 1.590000e-31 148.0
15 TraesCS7B01G134700 chr7A 91.765 85 6 1 1 84 210262809 210262893 4.480000e-22 117.0
16 TraesCS7B01G134700 chr7A 94.118 68 4 0 4796 4863 706781394 706781461 3.480000e-18 104.0
17 TraesCS7B01G134700 chr7A 85.057 87 5 5 5750 5835 211796871 211796950 1.630000e-11 82.4
18 TraesCS7B01G134700 chr7A 90.000 60 3 3 4129 4188 452062585 452062641 2.730000e-09 75.0
19 TraesCS7B01G134700 chr7A 88.060 67 3 4 4129 4193 483862454 483862391 2.730000e-09 75.0
20 TraesCS7B01G134700 chr5B 91.585 915 47 20 4130 5036 635100140 635101032 0.000000e+00 1236.0
21 TraesCS7B01G134700 chr5B 91.787 621 40 8 4129 4742 593541146 593541762 0.000000e+00 854.0
22 TraesCS7B01G134700 chr5B 90.000 340 21 8 5039 5370 593541856 593542190 1.820000e-115 427.0
23 TraesCS7B01G134700 chr5B 90.667 75 5 1 5272 5344 635101044 635101118 1.620000e-16 99.0
24 TraesCS7B01G134700 chr5B 88.608 79 6 3 5606 5683 635102005 635102081 7.540000e-15 93.5
25 TraesCS7B01G134700 chr5B 94.444 36 2 0 5000 5035 593541652 593541617 1.000000e-03 56.5
26 TraesCS7B01G134700 chr5B 96.774 31 1 0 5000 5030 635100641 635100611 1.300000e-02 52.8
27 TraesCS7B01G134700 chr4A 88.673 927 58 15 4130 5043 96322637 96323529 0.000000e+00 1086.0
28 TraesCS7B01G134700 chr4A 88.608 395 26 8 5081 5467 26690540 26690157 4.990000e-126 462.0
29 TraesCS7B01G134700 chr4A 94.340 159 6 2 4372 4529 26690939 26690783 2.550000e-59 241.0
30 TraesCS7B01G134700 chr4A 90.551 127 10 2 4128 4254 26691058 26690934 4.380000e-37 167.0
31 TraesCS7B01G134700 chr4A 89.474 95 8 1 4771 4863 26690676 26690582 1.240000e-22 119.0
32 TraesCS7B01G134700 chr2A 85.205 561 54 14 5081 5624 331403614 331403066 3.720000e-152 549.0
33 TraesCS7B01G134700 chr2A 84.436 257 14 5 4372 4627 331404013 331403782 5.510000e-56 230.0
34 TraesCS7B01G134700 chr2A 90.698 129 9 3 4130 4257 331404130 331404004 1.220000e-37 169.0
35 TraesCS7B01G134700 chr2A 90.588 85 8 0 4779 4863 331403740 331403656 5.790000e-21 113.0
36 TraesCS7B01G134700 chr2A 95.238 42 0 1 6239 6278 758265551 758265592 1.640000e-06 65.8
37 TraesCS7B01G134700 chr1D 85.279 197 23 4 1 194 476234766 476234959 1.550000e-46 198.0
38 TraesCS7B01G134700 chr2B 90.741 54 0 3 6237 6285 110043111 110043058 4.570000e-07 67.6
39 TraesCS7B01G134700 chr6B 95.238 42 0 1 6239 6278 179987302 179987261 1.640000e-06 65.8
40 TraesCS7B01G134700 chr6B 95.238 42 0 1 6239 6278 657068534 657068575 1.640000e-06 65.8
41 TraesCS7B01G134700 chr3B 95.238 42 0 1 6239 6278 498466998 498466957 1.640000e-06 65.8
42 TraesCS7B01G134700 chr1B 95.238 42 0 1 6239 6278 118514642 118514601 1.640000e-06 65.8
43 TraesCS7B01G134700 chr6A 95.122 41 0 1 6240 6278 33306651 33306611 5.910000e-06 63.9
44 TraesCS7B01G134700 chr6A 95.122 41 0 1 6240 6278 573423670 573423710 5.910000e-06 63.9
45 TraesCS7B01G134700 chr1A 95.122 41 0 1 6240 6278 27400109 27400069 5.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G134700 chr7B 164944181 164951242 7061 False 13042.000000 13042 100.000000 1 7062 1 chr7B.!!$F1 7061
1 TraesCS7B01G134700 chr7D 199828468 199833133 4665 False 2135.333333 4771 92.437667 732 7062 3 chr7D.!!$F2 6330
2 TraesCS7B01G134700 chr7D 199822166 199822849 683 False 806.000000 806 87.931000 3 694 1 chr7D.!!$F1 691
3 TraesCS7B01G134700 chr7A 211792939 211798859 5920 False 1316.480000 3378 89.068000 80 7062 5 chr7A.!!$F3 6982
4 TraesCS7B01G134700 chr7A 434750833 434751816 983 True 602.500000 1057 86.049000 4132 5154 2 chr7A.!!$R3 1022
5 TraesCS7B01G134700 chr7A 706780995 706782005 1010 False 263.500000 566 90.925500 4128 5586 4 chr7A.!!$F4 1458
6 TraesCS7B01G134700 chr5B 593541146 593542190 1044 False 640.500000 854 90.893500 4129 5370 2 chr5B.!!$F1 1241
7 TraesCS7B01G134700 chr5B 635100140 635102081 1941 False 476.166667 1236 90.286667 4130 5683 3 chr5B.!!$F2 1553
8 TraesCS7B01G134700 chr4A 96322637 96323529 892 False 1086.000000 1086 88.673000 4130 5043 1 chr4A.!!$F1 913
9 TraesCS7B01G134700 chr4A 26690157 26691058 901 True 247.250000 462 90.743250 4128 5467 4 chr4A.!!$R1 1339
10 TraesCS7B01G134700 chr2A 331403066 331404130 1064 True 265.250000 549 87.731750 4130 5624 4 chr2A.!!$R1 1494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 288 0.389817 TTTGAGATGGCCGACAGTCG 60.390 55.000 16.5 16.5 40.07 4.18 F
399 404 0.463654 AACAACTGGCAAGCGTCTCA 60.464 50.000 0.0 0.0 0.00 3.27 F
1656 1756 0.032813 ATGTTGATGCCAAGGAGGGG 60.033 55.000 0.0 0.0 38.09 4.79 F
1665 1765 0.469892 CCAAGGAGGGGCACTTGTTT 60.470 55.000 0.0 0.0 41.84 2.83 F
1666 1766 1.413118 CAAGGAGGGGCACTTGTTTT 58.587 50.000 0.0 0.0 39.30 2.43 F
2992 3097 1.067516 TCTGCTCTTTTTGCACTTGGC 59.932 47.619 0.0 0.0 45.13 4.52 F
3419 3525 0.605319 TAGCTTCCGTTTGCCCTGTG 60.605 55.000 0.0 0.0 0.00 3.66 F
4847 5017 0.249657 TGCAATTTTGACCCGCCAAC 60.250 50.000 0.0 0.0 0.00 3.77 F
5689 6731 0.179067 ACAGGAAACGACCAAAGCGA 60.179 50.000 0.0 0.0 0.00 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 1365 0.032952 TCCTCACAAAACGGTCTCGG 59.967 55.000 0.00 0.00 41.39 4.63 R
2263 2363 1.064003 TCAGTGGCACTGGTACCAAT 58.936 50.000 38.88 1.92 45.94 3.16 R
2644 2747 0.382873 TGTGTCGCGTGTGAGTTACT 59.617 50.000 5.77 0.00 0.00 2.24 R
2992 3097 0.518636 CAATCAGTCCTTGTGCACCG 59.481 55.000 15.69 5.26 0.00 4.94 R
2998 3103 0.773644 ACCAGCCAATCAGTCCTTGT 59.226 50.000 0.00 0.00 0.00 3.16 R
4734 4889 0.808453 TTGAGTATAAGCCACGCCGC 60.808 55.000 0.00 0.00 0.00 6.53 R
5079 5251 0.667993 CACCCGCAAAATGTGTGACT 59.332 50.000 0.00 0.00 40.42 3.41 R
5709 6751 0.034198 GGCTATCGCTTCTTCCTCCC 59.966 60.000 0.00 0.00 36.09 4.30 R
6932 8678 1.146930 GCATCGCAGGGGAAGATCA 59.853 57.895 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 112 6.132658 TGAGCCTCTTCATCTACACTAGAAT 58.867 40.000 0.00 0.00 38.50 2.40
115 117 7.417342 GCCTCTTCATCTACACTAGAATTGACT 60.417 40.741 0.00 0.00 38.50 3.41
124 126 9.256228 TCTACACTAGAATTGACTAGGTTCAAT 57.744 33.333 0.00 3.36 46.18 2.57
145 147 8.824159 TCAATTCGATTGCCAAAAAGAAAATA 57.176 26.923 0.00 0.00 40.05 1.40
224 226 3.663176 GGTGTCACGGTCGGTCGA 61.663 66.667 5.42 0.00 0.00 4.20
258 260 3.484407 GATGCCCAAGATGCTAGTGATT 58.516 45.455 0.00 0.00 0.00 2.57
285 288 0.389817 TTTGAGATGGCCGACAGTCG 60.390 55.000 16.50 16.50 40.07 4.18
288 291 0.952280 GAGATGGCCGACAGTCGATA 59.048 55.000 24.88 10.10 43.74 2.92
297 300 1.202533 CGACAGTCGATAAAGGGGCAT 60.203 52.381 18.63 0.00 43.74 4.40
376 381 5.057149 ACGATAGAGCTTTATTTTGGCGAT 58.943 37.500 8.64 0.00 41.38 4.58
377 382 5.050091 ACGATAGAGCTTTATTTTGGCGATG 60.050 40.000 8.64 0.00 41.38 3.84
386 391 5.446143 TTATTTTGGCGATGACAACAACT 57.554 34.783 0.00 0.00 26.20 3.16
387 392 2.772568 TTTGGCGATGACAACAACTG 57.227 45.000 0.00 0.00 26.20 3.16
389 394 1.210155 GGCGATGACAACAACTGGC 59.790 57.895 0.00 0.00 0.00 4.85
399 404 0.463654 AACAACTGGCAAGCGTCTCA 60.464 50.000 0.00 0.00 0.00 3.27
408 413 0.535102 CAAGCGTCTCAAAGTGGGGT 60.535 55.000 0.00 0.00 0.00 4.95
410 415 2.027625 GCGTCTCAAAGTGGGGTCG 61.028 63.158 0.00 0.00 0.00 4.79
429 434 2.031163 GCGGGCAACAGAGTCAGT 59.969 61.111 0.00 0.00 39.74 3.41
458 463 1.672881 GATTGAGGCAAAGGATGGTCG 59.327 52.381 0.00 0.00 0.00 4.79
459 464 0.960364 TTGAGGCAAAGGATGGTCGC 60.960 55.000 0.00 0.00 0.00 5.19
545 551 4.717778 TGGAGGGGATAATTTTACTCACGA 59.282 41.667 0.00 0.00 0.00 4.35
561 567 2.433318 GAGTGGGCAGTCGAGCAC 60.433 66.667 0.00 0.00 38.76 4.40
601 607 5.448632 CGGCCCATGAGTAATTGTTTTACTC 60.449 44.000 15.32 15.32 46.73 2.59
606 612 7.066284 CCCATGAGTAATTGTTTTACTCCTCTG 59.934 40.741 18.07 13.62 46.27 3.35
612 618 7.990886 AGTAATTGTTTTACTCCTCTGACAACA 59.009 33.333 0.00 0.00 29.89 3.33
628 634 4.058817 GACAACAATAAGGGATCGGCTAG 58.941 47.826 0.00 0.00 0.00 3.42
632 638 2.368875 CAATAAGGGATCGGCTAGGTGT 59.631 50.000 0.00 0.00 0.00 4.16
639 645 0.981183 ATCGGCTAGGTGTGGTTCAA 59.019 50.000 0.00 0.00 0.00 2.69
650 656 6.048732 AGGTGTGGTTCAAAAGAACAAAAT 57.951 33.333 10.16 0.00 36.83 1.82
651 657 6.472016 AGGTGTGGTTCAAAAGAACAAAATT 58.528 32.000 10.16 0.00 36.83 1.82
652 658 6.371271 AGGTGTGGTTCAAAAGAACAAAATTG 59.629 34.615 10.16 0.00 36.83 2.32
654 660 7.233689 GTGTGGTTCAAAAGAACAAAATTGAC 58.766 34.615 10.16 0.00 36.83 3.18
694 700 4.813027 TCTTTTAAGTGATCCGCGTTAGT 58.187 39.130 4.92 0.00 0.00 2.24
697 703 2.279582 AAGTGATCCGCGTTAGTGAG 57.720 50.000 4.92 0.00 0.00 3.51
698 704 1.174783 AGTGATCCGCGTTAGTGAGT 58.825 50.000 4.92 0.00 0.00 3.41
699 705 2.362736 AGTGATCCGCGTTAGTGAGTA 58.637 47.619 4.92 0.00 0.00 2.59
700 706 2.751259 AGTGATCCGCGTTAGTGAGTAA 59.249 45.455 4.92 0.00 0.00 2.24
702 708 4.577693 AGTGATCCGCGTTAGTGAGTAATA 59.422 41.667 4.92 0.00 0.00 0.98
703 709 4.910456 GTGATCCGCGTTAGTGAGTAATAG 59.090 45.833 4.92 0.00 0.00 1.73
705 711 5.297527 TGATCCGCGTTAGTGAGTAATAGAA 59.702 40.000 4.92 0.00 0.00 2.10
706 712 5.565592 TCCGCGTTAGTGAGTAATAGAAA 57.434 39.130 4.92 0.00 0.00 2.52
708 714 6.567050 TCCGCGTTAGTGAGTAATAGAAAAT 58.433 36.000 4.92 0.00 0.00 1.82
710 716 6.255020 CCGCGTTAGTGAGTAATAGAAAATGT 59.745 38.462 4.92 0.00 0.00 2.71
711 717 7.201496 CCGCGTTAGTGAGTAATAGAAAATGTT 60.201 37.037 4.92 0.00 0.00 2.71
712 718 7.839837 CGCGTTAGTGAGTAATAGAAAATGTTC 59.160 37.037 0.00 0.00 0.00 3.18
713 719 8.653338 GCGTTAGTGAGTAATAGAAAATGTTCA 58.347 33.333 0.00 0.00 36.09 3.18
714 720 9.953825 CGTTAGTGAGTAATAGAAAATGTTCAC 57.046 33.333 0.00 0.00 36.09 3.18
716 722 7.923414 AGTGAGTAATAGAAAATGTTCACCC 57.077 36.000 0.00 0.00 36.09 4.61
717 723 7.458397 AGTGAGTAATAGAAAATGTTCACCCA 58.542 34.615 0.00 0.00 36.09 4.51
718 724 7.390718 AGTGAGTAATAGAAAATGTTCACCCAC 59.609 37.037 0.00 0.00 36.09 4.61
719 725 7.174253 GTGAGTAATAGAAAATGTTCACCCACA 59.826 37.037 0.00 0.00 36.09 4.17
720 726 7.721842 TGAGTAATAGAAAATGTTCACCCACAA 59.278 33.333 0.00 0.00 36.09 3.33
721 727 8.472007 AGTAATAGAAAATGTTCACCCACAAA 57.528 30.769 0.00 0.00 36.09 2.83
722 728 8.919145 AGTAATAGAAAATGTTCACCCACAAAA 58.081 29.630 0.00 0.00 36.09 2.44
723 729 9.535878 GTAATAGAAAATGTTCACCCACAAAAA 57.464 29.630 0.00 0.00 36.09 1.94
928 934 3.071747 GCCTAAACCCCACAATTTTTCCA 59.928 43.478 0.00 0.00 0.00 3.53
1069 1075 2.501128 CATCCGCCCTGATGACGT 59.499 61.111 0.00 0.00 43.94 4.34
1129 1135 1.221781 CTCCTCCTAGGGTTGGATCCT 59.778 57.143 14.23 0.00 35.59 3.24
1132 1138 1.048724 TCCTAGGGTTGGATCCTGCG 61.049 60.000 14.23 0.00 35.92 5.18
1133 1139 1.447643 CTAGGGTTGGATCCTGCGG 59.552 63.158 14.23 0.00 35.92 5.69
1534 1566 2.309528 TAGCCGTGGTCATGCTTTAG 57.690 50.000 3.89 0.00 36.57 1.85
1557 1590 5.352569 AGTTTTTGCAGTCAGAGGAATATCG 59.647 40.000 0.00 0.00 0.00 2.92
1565 1598 1.802960 CAGAGGAATATCGCACATGCC 59.197 52.381 0.00 0.00 37.91 4.40
1592 1625 6.875972 AACCTGATAATGGTGTCTTAGTCT 57.124 37.500 0.00 0.00 37.93 3.24
1615 1648 7.113544 GTCTGCTGCAATTACTCAACTTAAAAC 59.886 37.037 3.02 0.00 0.00 2.43
1636 1669 5.262588 ACAGTTGATTGTTTTCCTTGGAC 57.737 39.130 0.00 0.00 0.00 4.02
1653 1753 1.747355 GGACATGTTGATGCCAAGGAG 59.253 52.381 0.00 0.00 32.14 3.69
1654 1754 1.747355 GACATGTTGATGCCAAGGAGG 59.253 52.381 0.00 0.00 41.84 4.30
1655 1755 1.108776 CATGTTGATGCCAAGGAGGG 58.891 55.000 0.00 0.00 38.09 4.30
1656 1756 0.032813 ATGTTGATGCCAAGGAGGGG 60.033 55.000 0.00 0.00 38.09 4.79
1663 1763 2.846532 CCAAGGAGGGGCACTTGT 59.153 61.111 0.00 0.00 41.84 3.16
1664 1764 1.153756 CCAAGGAGGGGCACTTGTT 59.846 57.895 0.00 0.00 41.84 2.83
1665 1765 0.469892 CCAAGGAGGGGCACTTGTTT 60.470 55.000 0.00 0.00 41.84 2.83
1666 1766 1.413118 CAAGGAGGGGCACTTGTTTT 58.587 50.000 0.00 0.00 39.30 2.43
1667 1767 2.593026 CAAGGAGGGGCACTTGTTTTA 58.407 47.619 0.00 0.00 39.30 1.52
1668 1768 3.165071 CAAGGAGGGGCACTTGTTTTAT 58.835 45.455 0.00 0.00 39.30 1.40
1669 1769 2.807676 AGGAGGGGCACTTGTTTTATG 58.192 47.619 0.00 0.00 0.00 1.90
1670 1770 2.110011 AGGAGGGGCACTTGTTTTATGT 59.890 45.455 0.00 0.00 0.00 2.29
1671 1771 3.332485 AGGAGGGGCACTTGTTTTATGTA 59.668 43.478 0.00 0.00 0.00 2.29
1672 1772 4.017499 AGGAGGGGCACTTGTTTTATGTAT 60.017 41.667 0.00 0.00 0.00 2.29
1673 1773 4.097892 GGAGGGGCACTTGTTTTATGTATG 59.902 45.833 0.00 0.00 0.00 2.39
1674 1774 4.023291 AGGGGCACTTGTTTTATGTATGG 58.977 43.478 0.00 0.00 0.00 2.74
1675 1775 4.020543 GGGGCACTTGTTTTATGTATGGA 58.979 43.478 0.00 0.00 0.00 3.41
1676 1776 4.464597 GGGGCACTTGTTTTATGTATGGAA 59.535 41.667 0.00 0.00 0.00 3.53
1677 1777 5.407502 GGGCACTTGTTTTATGTATGGAAC 58.592 41.667 0.00 0.00 0.00 3.62
1695 1795 6.538945 TGGAACACATGCTCTAACTATACA 57.461 37.500 0.00 0.00 0.00 2.29
1696 1796 6.941857 TGGAACACATGCTCTAACTATACAA 58.058 36.000 0.00 0.00 0.00 2.41
1697 1797 7.564793 TGGAACACATGCTCTAACTATACAAT 58.435 34.615 0.00 0.00 0.00 2.71
1698 1798 7.710907 TGGAACACATGCTCTAACTATACAATC 59.289 37.037 0.00 0.00 0.00 2.67
1699 1799 7.710907 GGAACACATGCTCTAACTATACAATCA 59.289 37.037 0.00 0.00 0.00 2.57
1700 1800 9.098355 GAACACATGCTCTAACTATACAATCAA 57.902 33.333 0.00 0.00 0.00 2.57
1701 1801 9.618890 AACACATGCTCTAACTATACAATCAAT 57.381 29.630 0.00 0.00 0.00 2.57
1702 1802 9.618890 ACACATGCTCTAACTATACAATCAATT 57.381 29.630 0.00 0.00 0.00 2.32
1746 1846 4.820173 CACCATGTAGCTCATCACAATCAT 59.180 41.667 0.00 0.00 34.09 2.45
1753 1853 5.562506 AGCTCATCACAATCATCTGTTTG 57.437 39.130 0.57 0.57 0.00 2.93
1785 1885 9.462174 CAATTTTCTCTTACAAAATGCTACACA 57.538 29.630 0.00 0.00 34.39 3.72
1790 1890 8.840833 TCTCTTACAAAATGCTACACATGTTA 57.159 30.769 0.00 0.00 39.60 2.41
1885 1985 1.550327 TGTCTACTACTGCAGCTGCT 58.450 50.000 36.61 21.93 42.66 4.24
2151 2251 2.224066 ACAAGCAGTCACCTGAGTACAC 60.224 50.000 0.00 0.00 41.50 2.90
2198 2298 7.568134 GCATTCATTATTTATTGCTTTGCTCCG 60.568 37.037 0.00 0.00 0.00 4.63
2263 2363 4.477536 AGGAAGTCCCTATCTCATAGCA 57.522 45.455 0.00 0.00 45.48 3.49
2269 2369 5.655394 AGTCCCTATCTCATAGCATTGGTA 58.345 41.667 0.00 0.00 0.00 3.25
2271 2371 4.777896 TCCCTATCTCATAGCATTGGTACC 59.222 45.833 4.43 4.43 0.00 3.34
2280 2380 3.650647 CATTGGTACCAGTGCCACT 57.349 52.632 22.77 0.00 45.01 4.00
2305 2405 2.154854 TCACGTCTCTTTTGCCTCAG 57.845 50.000 0.00 0.00 0.00 3.35
2311 2411 2.810852 GTCTCTTTTGCCTCAGTCCTTG 59.189 50.000 0.00 0.00 0.00 3.61
2335 2435 5.733676 ACAAATCCCCTTGTCAATTTATGC 58.266 37.500 0.00 0.00 34.37 3.14
2357 2457 5.588246 TGCATCTGAGAACAAGTGTTTACAA 59.412 36.000 0.00 0.00 38.56 2.41
2374 2474 9.471742 GTGTTTACAACTTTAAGCAAAAACATG 57.528 29.630 14.10 0.00 0.00 3.21
2375 2475 9.209175 TGTTTACAACTTTAAGCAAAAACATGT 57.791 25.926 0.00 0.00 0.00 3.21
2379 2479 7.962917 ACAACTTTAAGCAAAAACATGTCTTG 58.037 30.769 13.68 13.68 0.00 3.02
2440 2540 6.539173 TCATTTCCTTAGTTTAACTGCTCCA 58.461 36.000 8.00 0.00 0.00 3.86
2469 2569 6.183360 GGATTGATTAATTGTCATCACTGGCA 60.183 38.462 0.00 0.00 34.48 4.92
2472 2572 2.291209 AATTGTCATCACTGGCACCA 57.709 45.000 0.00 0.00 36.53 4.17
2488 2588 2.350522 CACCACTAGAACATGCCTGTC 58.649 52.381 0.00 0.00 33.36 3.51
2496 2596 2.570752 AGAACATGCCTGTCAGATCACT 59.429 45.455 0.00 0.00 33.36 3.41
2577 2677 5.405935 AAGTTGTGAGAAAGTTTTGGCTT 57.594 34.783 0.00 0.00 0.00 4.35
2587 2687 6.356556 AGAAAGTTTTGGCTTGGCTTTATTT 58.643 32.000 0.00 0.00 30.64 1.40
2591 2691 4.535526 TTTGGCTTGGCTTTATTTCTCC 57.464 40.909 0.00 0.00 0.00 3.71
2593 2693 2.290641 TGGCTTGGCTTTATTTCTCCGA 60.291 45.455 0.00 0.00 0.00 4.55
2598 2698 4.229304 TGGCTTTATTTCTCCGATCCAA 57.771 40.909 0.00 0.00 0.00 3.53
2652 2755 9.772973 TGCTAGTTATTTGAGAAAAGTAACTCA 57.227 29.630 8.65 0.00 40.66 3.41
2656 2759 8.548721 AGTTATTTGAGAAAAGTAACTCACACG 58.451 33.333 0.00 0.00 41.82 4.49
2657 2760 4.789095 TTGAGAAAAGTAACTCACACGC 57.211 40.909 0.00 0.00 41.82 5.34
2658 2761 2.792674 TGAGAAAAGTAACTCACACGCG 59.207 45.455 3.53 3.53 38.08 6.01
2679 2782 5.616866 CGCGACACATTTTGTAGGAAGAAAT 60.617 40.000 0.00 0.00 39.17 2.17
2681 2784 6.015504 CGACACATTTTGTAGGAAGAAATCG 58.984 40.000 0.00 0.00 39.17 3.34
2685 2788 8.504005 ACACATTTTGTAGGAAGAAATCGTAAG 58.496 33.333 0.00 0.00 36.32 2.34
2720 2823 8.267183 TGGCTCTAATTATTGTGAGATCTTTCA 58.733 33.333 0.00 0.00 0.00 2.69
2729 2832 9.948964 TTATTGTGAGATCTTTCATTTCTCTCA 57.051 29.630 0.00 0.00 39.87 3.27
2731 2834 8.489990 TTGTGAGATCTTTCATTTCTCTCATC 57.510 34.615 0.00 0.53 42.91 2.92
2732 2835 7.849160 TGTGAGATCTTTCATTTCTCTCATCT 58.151 34.615 0.00 0.00 42.91 2.90
2733 2836 7.764901 TGTGAGATCTTTCATTTCTCTCATCTG 59.235 37.037 0.00 0.00 42.91 2.90
2743 2846 8.071177 TCATTTCTCTCATCTGTCATCTGTAA 57.929 34.615 0.00 0.00 0.00 2.41
2765 2868 6.830873 AATCAGTTGCATCTAGCTCTTTTT 57.169 33.333 0.00 0.00 45.94 1.94
2794 2899 4.703575 ACATTTCTGCTAATGTGACAGCAT 59.296 37.500 10.29 0.00 46.15 3.79
2799 2904 4.945543 TCTGCTAATGTGACAGCATCATTT 59.054 37.500 0.00 0.00 46.15 2.32
2809 2914 8.278729 TGTGACAGCATCATTTCATTAACATA 57.721 30.769 0.00 0.00 40.28 2.29
2944 3049 4.385748 GCATACTTTGTTGCAAAAGGCTAC 59.614 41.667 13.92 0.00 46.54 3.58
2992 3097 1.067516 TCTGCTCTTTTTGCACTTGGC 59.932 47.619 0.00 0.00 45.13 4.52
3044 3149 4.080243 TGGTGAAAAGTGGTCTTGAGGTAA 60.080 41.667 0.00 0.00 33.79 2.85
3045 3150 4.885325 GGTGAAAAGTGGTCTTGAGGTAAA 59.115 41.667 0.00 0.00 33.79 2.01
3046 3151 5.535030 GGTGAAAAGTGGTCTTGAGGTAAAT 59.465 40.000 0.00 0.00 33.79 1.40
3048 3153 7.308408 GGTGAAAAGTGGTCTTGAGGTAAATAC 60.308 40.741 0.00 0.00 33.79 1.89
3071 3177 6.010219 ACAAATGCCCTTGTTGAACTAGTAT 58.990 36.000 6.08 0.00 36.05 2.12
3083 3189 5.940192 TGAACTAGTATGTTTGTGGCTTG 57.060 39.130 0.00 0.00 0.00 4.01
3339 3445 3.808265 GCATTACTGCCATATCTGGAGCA 60.808 47.826 0.32 0.00 46.37 4.26
3370 3476 4.825634 CAGGGAATGATGCAGTATGTCAAT 59.174 41.667 0.00 0.00 39.31 2.57
3386 3492 5.991933 TGTCAATACTTCTCTTGCTCTCT 57.008 39.130 0.00 0.00 0.00 3.10
3419 3525 0.605319 TAGCTTCCGTTTGCCCTGTG 60.605 55.000 0.00 0.00 0.00 3.66
3421 3527 0.887387 GCTTCCGTTTGCCCTGTGTA 60.887 55.000 0.00 0.00 0.00 2.90
3521 3627 6.245408 TGTGTTCAGTATGGAGCCTTTTATT 58.755 36.000 0.00 0.00 36.16 1.40
3523 3629 6.374333 GTGTTCAGTATGGAGCCTTTTATTCA 59.626 38.462 0.00 0.00 36.16 2.57
3578 3684 3.235157 ACATTTTGTCCGCAATCATGG 57.765 42.857 0.00 0.00 33.39 3.66
3607 3713 8.840321 GGAGTTTATAGCTCTGAAAATTATGCA 58.160 33.333 0.00 0.00 33.73 3.96
3624 3730 9.463443 AAATTATGCAGTGTTAAACTTCTGTTC 57.537 29.630 0.00 0.00 36.83 3.18
3648 3754 6.873076 TCTTAATTGGTTTGCACATTCATTCC 59.127 34.615 0.00 0.00 0.00 3.01
3655 3761 2.378038 TGCACATTCATTCCCTTAGCC 58.622 47.619 0.00 0.00 0.00 3.93
3825 3939 9.672673 AGTTCACTAATTCTTGTAGCACATAAT 57.327 29.630 0.00 0.00 0.00 1.28
4040 4154 5.724328 TGCTCTTCAGGTATAGTTCACAAG 58.276 41.667 0.00 0.00 0.00 3.16
4247 4361 3.543680 TGTAGATAGCAGGCCTGTTTC 57.456 47.619 32.81 24.60 0.00 2.78
4496 4648 2.608752 GCAACTGAATGTTTGAGGCCAG 60.609 50.000 5.01 0.00 36.63 4.85
4498 4650 2.949447 ACTGAATGTTTGAGGCCAGTT 58.051 42.857 5.01 0.00 31.62 3.16
4499 4651 4.098914 ACTGAATGTTTGAGGCCAGTTA 57.901 40.909 5.01 0.00 31.62 2.24
4624 4779 6.200665 CAGAGCTGAAATAGGAAGATTTCTCG 59.799 42.308 0.00 3.61 43.40 4.04
4682 4837 2.538141 CCTCACCTTGCCCTTCCCA 61.538 63.158 0.00 0.00 0.00 4.37
4758 4924 2.906354 CGTGGCTTATACTCAAAGGCT 58.094 47.619 10.22 0.00 46.57 4.58
4793 4959 2.669924 CACGATTATGCCTCCGATGATG 59.330 50.000 0.00 0.00 0.00 3.07
4812 4982 1.070601 TGGGCCATGTCGATGTATCTG 59.929 52.381 0.00 0.00 0.00 2.90
4845 5015 0.683973 AATGCAATTTTGACCCGCCA 59.316 45.000 0.00 0.00 26.74 5.69
4847 5017 0.249657 TGCAATTTTGACCCGCCAAC 60.250 50.000 0.00 0.00 0.00 3.77
4906 5078 6.750501 CACATCTTGGCAGATTTGTAATTCTG 59.249 38.462 10.58 10.58 37.71 3.02
4946 5118 4.390603 TGTTGTAGTCACACAGTTGTTCAC 59.609 41.667 0.00 0.00 33.30 3.18
5032 5204 8.947305 AGAGAAATCTTCCTATTTCAGATCCAT 58.053 33.333 10.86 0.00 44.70 3.41
5033 5205 9.571816 GAGAAATCTTCCTATTTCAGATCCATT 57.428 33.333 10.86 0.00 44.70 3.16
5034 5206 9.933240 AGAAATCTTCCTATTTCAGATCCATTT 57.067 29.630 10.86 0.00 44.70 2.32
5068 5240 7.433680 TCTTATCTTCATTAGCACGCATAGAA 58.566 34.615 0.00 0.00 0.00 2.10
5069 5241 7.926018 TCTTATCTTCATTAGCACGCATAGAAA 59.074 33.333 0.00 0.00 0.00 2.52
5070 5242 8.607441 TTATCTTCATTAGCACGCATAGAAAT 57.393 30.769 0.00 0.00 0.00 2.17
5071 5243 6.925610 TCTTCATTAGCACGCATAGAAATT 57.074 33.333 0.00 0.00 0.00 1.82
5072 5244 7.320443 TCTTCATTAGCACGCATAGAAATTT 57.680 32.000 0.00 0.00 0.00 1.82
5073 5245 7.761409 TCTTCATTAGCACGCATAGAAATTTT 58.239 30.769 0.00 0.00 0.00 1.82
5074 5246 7.697710 TCTTCATTAGCACGCATAGAAATTTTG 59.302 33.333 0.00 0.00 0.00 2.44
5075 5247 5.743398 TCATTAGCACGCATAGAAATTTTGC 59.257 36.000 3.67 3.67 0.00 3.68
5076 5248 3.855689 AGCACGCATAGAAATTTTGCT 57.144 38.095 10.69 8.25 34.23 3.91
5077 5249 3.504863 AGCACGCATAGAAATTTTGCTG 58.495 40.909 9.81 8.60 37.45 4.41
5078 5250 3.057315 AGCACGCATAGAAATTTTGCTGT 60.057 39.130 9.81 7.44 37.45 4.40
5079 5251 4.155826 AGCACGCATAGAAATTTTGCTGTA 59.844 37.500 9.81 0.00 37.45 2.74
5157 5347 5.991861 TGACCCACCGCTTATATTAGAAAA 58.008 37.500 0.00 0.00 0.00 2.29
5162 5352 9.411189 ACCCACCGCTTATATTAGAAAAATTAA 57.589 29.630 0.00 0.00 0.00 1.40
5178 5368 9.237187 AGAAAAATTAACATCTCTTTCCTCCTC 57.763 33.333 0.00 0.00 0.00 3.71
5179 5369 7.946381 AAAATTAACATCTCTTTCCTCCTCC 57.054 36.000 0.00 0.00 0.00 4.30
5195 5394 2.037251 TCCTCCTTCCTTGTTTCTGTCG 59.963 50.000 0.00 0.00 0.00 4.35
5200 5399 2.417339 TCCTTGTTTCTGTCGAGTCG 57.583 50.000 6.09 6.09 0.00 4.18
5291 5491 2.170817 AGCGTTATCCCTCTTTCCTTCC 59.829 50.000 0.00 0.00 0.00 3.46
5323 5523 4.772886 TGTAATTAGCCCCTCTTTCCTC 57.227 45.455 0.00 0.00 0.00 3.71
5373 5575 9.664332 CTCTTTCCTTCTTCATTTATCTCTCAA 57.336 33.333 0.00 0.00 0.00 3.02
5391 5599 6.206438 TCTCTCAAGATCTCAAGTGATATCCG 59.794 42.308 0.00 0.00 30.59 4.18
5399 5607 7.995488 AGATCTCAAGTGATATCCGGAAAATTT 59.005 33.333 9.01 0.00 30.59 1.82
5404 5612 9.849166 TCAAGTGATATCCGGAAAATTTAAAAC 57.151 29.630 9.01 0.00 0.00 2.43
5448 5656 4.141914 GGATATAAATAGGCGAGGTGGGAG 60.142 50.000 0.00 0.00 0.00 4.30
5467 5676 7.456902 GGTGGGAGTATATAGGAATCAACCTTA 59.543 40.741 0.00 0.00 41.00 2.69
5468 5677 9.047947 GTGGGAGTATATAGGAATCAACCTTAT 57.952 37.037 0.00 0.00 41.00 1.73
5469 5678 9.629649 TGGGAGTATATAGGAATCAACCTTATT 57.370 33.333 0.00 0.00 41.00 1.40
5484 5693 5.897377 ACCTTATTTGATACTGGCAACAC 57.103 39.130 0.00 0.00 46.17 3.32
5486 5695 4.634004 CCTTATTTGATACTGGCAACACGA 59.366 41.667 0.00 0.00 46.17 4.35
5487 5696 5.220662 CCTTATTTGATACTGGCAACACGAG 60.221 44.000 0.00 0.00 46.17 4.18
5507 5716 2.093764 AGCTAGCTCAGTTGGTCATGAC 60.094 50.000 17.91 17.91 0.00 3.06
5510 5719 1.071605 GCTCAGTTGGTCATGACGTC 58.928 55.000 19.33 9.11 0.00 4.34
5519 5728 1.202154 GGTCATGACGTCTCGTAGTGG 60.202 57.143 19.33 0.00 41.37 4.00
5531 5740 1.251527 CGTAGTGGACCAGAGGTGCT 61.252 60.000 9.12 0.00 44.53 4.40
5532 5741 1.848652 GTAGTGGACCAGAGGTGCTA 58.151 55.000 9.12 0.00 44.53 3.49
5547 5756 3.017442 GGTGCTAAGTTCAATTCCCCTC 58.983 50.000 0.00 0.00 0.00 4.30
5548 5757 3.561313 GGTGCTAAGTTCAATTCCCCTCA 60.561 47.826 0.00 0.00 0.00 3.86
5608 5817 4.776322 CCGGATTCGCTGGGCACA 62.776 66.667 0.00 0.00 39.56 4.57
5609 5818 2.514592 CGGATTCGCTGGGCACAT 60.515 61.111 0.00 0.00 0.00 3.21
5617 6659 4.371417 CTGGGCACATGGGCTGGT 62.371 66.667 21.47 0.00 42.84 4.00
5625 6667 0.321653 ACATGGGCTGGTTCGTTCTC 60.322 55.000 0.00 0.00 0.00 2.87
5649 6691 3.358993 GTGACGAACGAAACTAACCGTAG 59.641 47.826 0.14 0.00 38.13 3.51
5680 6722 0.754472 ACGGGAGAAACAGGAAACGA 59.246 50.000 0.00 0.00 0.00 3.85
5681 6723 1.145803 CGGGAGAAACAGGAAACGAC 58.854 55.000 0.00 0.00 0.00 4.34
5683 6725 1.202722 GGGAGAAACAGGAAACGACCA 60.203 52.381 0.00 0.00 0.00 4.02
5684 6726 2.567985 GGAGAAACAGGAAACGACCAA 58.432 47.619 0.00 0.00 0.00 3.67
5685 6727 2.946990 GGAGAAACAGGAAACGACCAAA 59.053 45.455 0.00 0.00 0.00 3.28
5686 6728 3.003378 GGAGAAACAGGAAACGACCAAAG 59.997 47.826 0.00 0.00 0.00 2.77
5687 6729 2.357952 AGAAACAGGAAACGACCAAAGC 59.642 45.455 0.00 0.00 0.00 3.51
5688 6730 0.661020 AACAGGAAACGACCAAAGCG 59.339 50.000 0.00 0.00 0.00 4.68
5689 6731 0.179067 ACAGGAAACGACCAAAGCGA 60.179 50.000 0.00 0.00 0.00 4.93
5690 6732 0.941542 CAGGAAACGACCAAAGCGAA 59.058 50.000 0.00 0.00 0.00 4.70
5691 6733 1.069906 CAGGAAACGACCAAAGCGAAG 60.070 52.381 0.00 0.00 0.00 3.79
5692 6734 1.202604 AGGAAACGACCAAAGCGAAGA 60.203 47.619 0.00 0.00 0.00 2.87
5693 6735 1.070108 GGAAACGACCAAAGCGAAGAC 60.070 52.381 0.00 0.00 0.00 3.01
5694 6736 0.580104 AAACGACCAAAGCGAAGACG 59.420 50.000 0.00 0.00 42.93 4.18
5695 6737 0.249155 AACGACCAAAGCGAAGACGA 60.249 50.000 0.00 0.00 42.66 4.20
5696 6738 0.938168 ACGACCAAAGCGAAGACGAC 60.938 55.000 0.00 0.00 42.66 4.34
5697 6739 1.773496 GACCAAAGCGAAGACGACG 59.227 57.895 0.00 0.00 42.66 5.12
5698 6740 1.615107 GACCAAAGCGAAGACGACGG 61.615 60.000 0.00 0.00 42.66 4.79
5699 6741 1.372499 CCAAAGCGAAGACGACGGA 60.372 57.895 0.00 0.00 42.66 4.69
5700 6742 1.615107 CCAAAGCGAAGACGACGGAC 61.615 60.000 0.00 0.00 42.66 4.79
5701 6743 1.372623 AAAGCGAAGACGACGGACC 60.373 57.895 0.00 0.00 42.66 4.46
5702 6744 2.079020 AAAGCGAAGACGACGGACCA 62.079 55.000 0.00 0.00 42.66 4.02
5703 6745 2.049802 GCGAAGACGACGGACCAA 60.050 61.111 0.00 0.00 42.66 3.67
5704 6746 1.662446 GCGAAGACGACGGACCAAA 60.662 57.895 0.00 0.00 42.66 3.28
5705 6747 1.012486 GCGAAGACGACGGACCAAAT 61.012 55.000 0.00 0.00 42.66 2.32
5706 6748 1.425412 CGAAGACGACGGACCAAATT 58.575 50.000 0.00 0.00 42.66 1.82
5707 6749 2.598589 CGAAGACGACGGACCAAATTA 58.401 47.619 0.00 0.00 42.66 1.40
5708 6750 3.184541 CGAAGACGACGGACCAAATTAT 58.815 45.455 0.00 0.00 42.66 1.28
5709 6751 3.000078 CGAAGACGACGGACCAAATTATG 60.000 47.826 0.00 0.00 42.66 1.90
5721 6763 4.926140 CCAAATTATGGGAGGAAGAAGC 57.074 45.455 0.23 0.00 46.27 3.86
5722 6764 3.316308 CCAAATTATGGGAGGAAGAAGCG 59.684 47.826 0.23 0.00 46.27 4.68
5723 6765 4.199310 CAAATTATGGGAGGAAGAAGCGA 58.801 43.478 0.00 0.00 0.00 4.93
5724 6766 4.713792 AATTATGGGAGGAAGAAGCGAT 57.286 40.909 0.00 0.00 0.00 4.58
5725 6767 5.825593 AATTATGGGAGGAAGAAGCGATA 57.174 39.130 0.00 0.00 0.00 2.92
5726 6768 4.873746 TTATGGGAGGAAGAAGCGATAG 57.126 45.455 0.00 0.00 0.00 2.08
5746 6788 8.801882 CGATAGCCCATTTTATTATTAGGGAA 57.198 34.615 0.00 0.00 38.60 3.97
5747 6789 9.238368 CGATAGCCCATTTTATTATTAGGGAAA 57.762 33.333 0.00 0.00 38.60 3.13
5835 6909 3.648339 ACTGCAGCATTGAACGATTTT 57.352 38.095 15.27 0.00 0.00 1.82
5844 6918 4.384547 GCATTGAACGATTTTGTTACCCAC 59.615 41.667 0.00 0.00 30.75 4.61
5932 7006 6.721571 ACACTTTTGATGTATGTTCCTACG 57.278 37.500 0.00 0.00 0.00 3.51
5971 7045 3.443045 GCCGGGGCATTGACACTG 61.443 66.667 2.18 0.00 41.49 3.66
6084 7158 0.729116 CACGCCATGAATCAGTCACC 59.271 55.000 0.00 0.00 39.72 4.02
6086 7160 1.012086 CGCCATGAATCAGTCACCAG 58.988 55.000 0.00 0.00 39.72 4.00
6087 7161 0.737219 GCCATGAATCAGTCACCAGC 59.263 55.000 0.00 0.00 39.72 4.85
6088 7162 1.681166 GCCATGAATCAGTCACCAGCT 60.681 52.381 0.00 0.00 39.72 4.24
6089 7163 2.719739 CCATGAATCAGTCACCAGCTT 58.280 47.619 0.00 0.00 39.72 3.74
6090 7164 3.877559 CCATGAATCAGTCACCAGCTTA 58.122 45.455 0.00 0.00 39.72 3.09
6091 7165 4.458397 CCATGAATCAGTCACCAGCTTAT 58.542 43.478 0.00 0.00 39.72 1.73
6094 7168 5.885230 TGAATCAGTCACCAGCTTATTTG 57.115 39.130 0.00 0.00 0.00 2.32
6140 7215 0.762461 TGGCCCCCTTGTTTCTTTGG 60.762 55.000 0.00 0.00 0.00 3.28
6141 7216 0.762842 GGCCCCCTTGTTTCTTTGGT 60.763 55.000 0.00 0.00 0.00 3.67
6157 7232 9.738832 GTTTCTTTGGTTGCTAAAGTATTTGTA 57.261 29.630 5.20 0.00 39.63 2.41
6242 7322 6.183361 ACCCTTCTGAAAGTTCCTTTGATACT 60.183 38.462 0.00 0.00 33.49 2.12
6243 7323 6.372937 CCCTTCTGAAAGTTCCTTTGATACTC 59.627 42.308 0.00 0.00 33.49 2.59
6245 7325 5.805728 TCTGAAAGTTCCTTTGATACTCCC 58.194 41.667 0.00 0.00 33.49 4.30
6246 7326 5.548056 TCTGAAAGTTCCTTTGATACTCCCT 59.452 40.000 0.00 0.00 33.49 4.20
6247 7327 5.805728 TGAAAGTTCCTTTGATACTCCCTC 58.194 41.667 0.00 0.00 33.49 4.30
6248 7328 5.548056 TGAAAGTTCCTTTGATACTCCCTCT 59.452 40.000 0.00 0.00 33.49 3.69
6249 7329 6.729100 TGAAAGTTCCTTTGATACTCCCTCTA 59.271 38.462 0.00 0.00 33.49 2.43
6250 7330 6.547930 AAGTTCCTTTGATACTCCCTCTAC 57.452 41.667 0.00 0.00 0.00 2.59
6251 7331 4.963628 AGTTCCTTTGATACTCCCTCTACC 59.036 45.833 0.00 0.00 0.00 3.18
6252 7332 3.563223 TCCTTTGATACTCCCTCTACCG 58.437 50.000 0.00 0.00 0.00 4.02
6253 7333 3.203710 TCCTTTGATACTCCCTCTACCGA 59.796 47.826 0.00 0.00 0.00 4.69
6254 7334 3.958798 CCTTTGATACTCCCTCTACCGAA 59.041 47.826 0.00 0.00 0.00 4.30
6257 7337 6.267014 CCTTTGATACTCCCTCTACCGAAATA 59.733 42.308 0.00 0.00 0.00 1.40
6258 7338 6.645790 TTGATACTCCCTCTACCGAAATAC 57.354 41.667 0.00 0.00 0.00 1.89
6259 7339 5.698104 TGATACTCCCTCTACCGAAATACA 58.302 41.667 0.00 0.00 0.00 2.29
6260 7340 6.312529 TGATACTCCCTCTACCGAAATACAT 58.687 40.000 0.00 0.00 0.00 2.29
6263 7343 4.341520 ACTCCCTCTACCGAAATACATGTC 59.658 45.833 0.00 0.00 0.00 3.06
6266 7346 3.243434 CCTCTACCGAAATACATGTCGCT 60.243 47.826 0.00 0.00 35.93 4.93
6267 7347 3.702330 TCTACCGAAATACATGTCGCTG 58.298 45.455 0.00 0.00 35.93 5.18
6268 7348 1.651987 ACCGAAATACATGTCGCTGG 58.348 50.000 0.00 1.83 35.93 4.85
6269 7349 1.206132 ACCGAAATACATGTCGCTGGA 59.794 47.619 0.00 0.00 35.93 3.86
6270 7350 1.860950 CCGAAATACATGTCGCTGGAG 59.139 52.381 0.00 0.00 35.93 3.86
6271 7351 2.540515 CGAAATACATGTCGCTGGAGT 58.459 47.619 0.00 0.00 0.00 3.85
6272 7352 3.490249 CCGAAATACATGTCGCTGGAGTA 60.490 47.826 0.00 0.00 35.93 2.59
6273 7353 3.731216 CGAAATACATGTCGCTGGAGTAG 59.269 47.826 0.00 0.00 0.00 2.57
6283 7363 3.605946 CTGGAGTAGCTGAGGGAGT 57.394 57.895 0.00 0.00 0.00 3.85
6288 7368 4.924625 TGGAGTAGCTGAGGGAGTATATC 58.075 47.826 0.00 0.00 0.00 1.63
6289 7369 4.354087 TGGAGTAGCTGAGGGAGTATATCA 59.646 45.833 0.00 0.00 0.00 2.15
6290 7370 4.703093 GGAGTAGCTGAGGGAGTATATCAC 59.297 50.000 0.00 0.00 0.00 3.06
6291 7371 5.317808 GAGTAGCTGAGGGAGTATATCACA 58.682 45.833 0.00 0.00 31.63 3.58
6327 7753 0.393537 CTCATTCTGGGGGTGCTGTC 60.394 60.000 0.00 0.00 0.00 3.51
6343 7769 1.334869 CTGTCCAAAAGTGTGTGCTCC 59.665 52.381 0.00 0.00 0.00 4.70
6359 7785 2.035193 TGCTCCGATAGATCTTGTCTGC 59.965 50.000 0.00 5.66 37.83 4.26
6361 7787 2.625314 CTCCGATAGATCTTGTCTGCCA 59.375 50.000 0.00 0.00 37.83 4.92
6362 7788 2.625314 TCCGATAGATCTTGTCTGCCAG 59.375 50.000 0.00 0.00 37.83 4.85
6423 7907 8.518702 GTTCATCTATAGTATGCTCATGTGAGA 58.481 37.037 13.94 0.15 44.74 3.27
6451 7935 2.490115 TGTTTTGATCAACGGTATGGCC 59.510 45.455 7.89 0.00 0.00 5.36
6459 7943 0.609662 AACGGTATGGCCTGTACGTT 59.390 50.000 18.33 18.33 34.25 3.99
6479 7963 3.713858 TTTCATGCACCTGAAAGTGTG 57.286 42.857 10.69 0.00 39.55 3.82
6520 8004 6.549433 TGTACCCCATCGTTTTACTTAGAT 57.451 37.500 0.00 0.00 0.00 1.98
6526 8010 5.220662 CCCATCGTTTTACTTAGATGCAGTG 60.221 44.000 0.00 0.00 39.16 3.66
6531 8015 5.633601 CGTTTTACTTAGATGCAGTGACAGA 59.366 40.000 0.00 0.00 0.00 3.41
6532 8016 6.311445 CGTTTTACTTAGATGCAGTGACAGAT 59.689 38.462 0.00 0.00 0.00 2.90
6533 8017 7.459486 GTTTTACTTAGATGCAGTGACAGATG 58.541 38.462 0.00 0.00 0.00 2.90
6534 8018 6.530019 TTACTTAGATGCAGTGACAGATGA 57.470 37.500 0.00 0.00 0.00 2.92
6535 8019 4.753233 ACTTAGATGCAGTGACAGATGAC 58.247 43.478 0.00 0.00 0.00 3.06
6536 8020 4.221482 ACTTAGATGCAGTGACAGATGACA 59.779 41.667 0.00 0.00 0.00 3.58
6537 8021 2.969990 AGATGCAGTGACAGATGACAC 58.030 47.619 7.25 7.25 40.16 3.67
6545 8029 5.625251 CAGTGACAGATGACACTTTTATGC 58.375 41.667 13.92 0.00 45.82 3.14
6554 8038 5.871465 TGACACTTTTATGCTGCGATTTA 57.129 34.783 0.00 0.00 0.00 1.40
6594 8333 7.100409 GCTACTGAGATGGGAATATAAGGAAC 58.900 42.308 0.00 0.00 0.00 3.62
6649 8388 1.270252 CCTTGTGTTCCAAACATGCCC 60.270 52.381 0.00 0.00 44.35 5.36
6652 8391 1.686052 TGTGTTCCAAACATGCCCTTC 59.314 47.619 0.00 0.00 44.35 3.46
6668 8407 4.399934 TGCCCTTCGAAGTTAAAAGTGTTT 59.600 37.500 23.03 0.00 0.00 2.83
6755 8495 9.213799 TGTTTTTATTTCATAAACAATGGGAGC 57.786 29.630 0.00 0.00 38.43 4.70
6771 8511 1.143073 GGAGCGGATTTAGGGATGGTT 59.857 52.381 0.00 0.00 0.00 3.67
6788 8528 2.224523 TGGTTGTTGGTTGTGGCAAAAA 60.225 40.909 0.00 0.00 0.00 1.94
6816 8562 3.118956 GGATCATACCATGTCGGATCTCC 60.119 52.174 11.32 0.00 38.63 3.71
6932 8678 0.674581 CATCGTCACTGCCATGTGGT 60.675 55.000 0.35 0.00 38.40 4.16
7006 8755 1.022735 CACTATCCGTCTACGTGCCT 58.977 55.000 0.00 0.00 37.74 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.438781 TGGTCGTTGCCATAATCTTCAAC 59.561 43.478 0.00 0.00 36.42 3.18
2 3 3.680490 TGGTCGTTGCCATAATCTTCAA 58.320 40.909 0.00 0.00 32.81 2.69
3 4 3.342377 TGGTCGTTGCCATAATCTTCA 57.658 42.857 0.00 0.00 32.81 3.02
19 20 2.420022 CGGTGATGACTTGGAAATGGTC 59.580 50.000 0.00 0.00 0.00 4.02
110 112 4.394920 GGCAATCGAATTGAACCTAGTCAA 59.605 41.667 10.52 0.00 42.83 3.18
115 117 5.713792 TTTTGGCAATCGAATTGAACCTA 57.286 34.783 0.00 0.57 42.83 3.08
124 126 8.924691 CATCTTATTTTCTTTTTGGCAATCGAA 58.075 29.630 0.00 1.52 0.00 3.71
145 147 9.305925 GTGAGTTTCTTTGTGATTTTTCATCTT 57.694 29.630 0.00 0.00 0.00 2.40
237 239 2.627515 TCACTAGCATCTTGGGCATC 57.372 50.000 0.00 0.00 0.00 3.91
238 240 3.220110 CAATCACTAGCATCTTGGGCAT 58.780 45.455 0.00 0.00 0.00 4.40
258 260 2.045045 CCATCTCAAAGCCCGCCA 60.045 61.111 0.00 0.00 0.00 5.69
285 288 3.521727 TCTCCCTCTATGCCCCTTTATC 58.478 50.000 0.00 0.00 0.00 1.75
288 291 2.131023 CTTCTCCCTCTATGCCCCTTT 58.869 52.381 0.00 0.00 0.00 3.11
297 300 1.403814 CACCGCATCTTCTCCCTCTA 58.596 55.000 0.00 0.00 0.00 2.43
327 330 3.640000 CCGCGTCAATCCCATCGC 61.640 66.667 4.92 0.00 44.23 4.58
342 347 0.383983 CTCTATCGTTACCGTCGCCG 60.384 60.000 0.00 0.00 35.01 6.46
343 348 0.659711 GCTCTATCGTTACCGTCGCC 60.660 60.000 0.00 0.00 35.01 5.54
350 355 6.019318 TCGCCAAAATAAAGCTCTATCGTTAC 60.019 38.462 0.00 0.00 0.00 2.50
351 356 6.044046 TCGCCAAAATAAAGCTCTATCGTTA 58.956 36.000 0.00 0.00 0.00 3.18
353 358 4.439057 TCGCCAAAATAAAGCTCTATCGT 58.561 39.130 0.00 0.00 0.00 3.73
359 364 4.355543 TGTCATCGCCAAAATAAAGCTC 57.644 40.909 0.00 0.00 0.00 4.09
376 381 1.029408 ACGCTTGCCAGTTGTTGTCA 61.029 50.000 0.00 0.00 0.00 3.58
377 382 0.317020 GACGCTTGCCAGTTGTTGTC 60.317 55.000 0.00 0.00 0.00 3.18
386 391 1.165907 CCACTTTGAGACGCTTGCCA 61.166 55.000 0.00 0.00 0.00 4.92
387 392 1.576421 CCACTTTGAGACGCTTGCC 59.424 57.895 0.00 0.00 0.00 4.52
389 394 0.535102 ACCCCACTTTGAGACGCTTG 60.535 55.000 0.00 0.00 0.00 4.01
390 395 0.250338 GACCCCACTTTGAGACGCTT 60.250 55.000 0.00 0.00 0.00 4.68
410 415 4.329545 TGACTCTGTTGCCCGCCC 62.330 66.667 0.00 0.00 0.00 6.13
421 426 2.695666 CAATCGATACCCCACTGACTCT 59.304 50.000 0.00 0.00 0.00 3.24
425 430 2.039418 CCTCAATCGATACCCCACTGA 58.961 52.381 0.00 0.00 0.00 3.41
429 434 1.208706 TTGCCTCAATCGATACCCCA 58.791 50.000 0.00 0.00 0.00 4.96
503 508 0.471211 ATCCCATATCCCACGTCGGT 60.471 55.000 0.00 0.00 0.00 4.69
509 514 0.995024 CCCTCCATCCCATATCCCAC 59.005 60.000 0.00 0.00 0.00 4.61
510 515 0.178834 CCCCTCCATCCCATATCCCA 60.179 60.000 0.00 0.00 0.00 4.37
511 516 0.121197 TCCCCTCCATCCCATATCCC 59.879 60.000 0.00 0.00 0.00 3.85
512 517 2.293598 ATCCCCTCCATCCCATATCC 57.706 55.000 0.00 0.00 0.00 2.59
513 518 6.347061 AAATTATCCCCTCCATCCCATATC 57.653 41.667 0.00 0.00 0.00 1.63
514 519 6.758085 AAAATTATCCCCTCCATCCCATAT 57.242 37.500 0.00 0.00 0.00 1.78
515 520 6.802660 AGTAAAATTATCCCCTCCATCCCATA 59.197 38.462 0.00 0.00 0.00 2.74
545 551 2.116983 AATGTGCTCGACTGCCCACT 62.117 55.000 0.00 0.00 0.00 4.00
559 565 1.361668 CGCCCCGACTCTCAAATGTG 61.362 60.000 0.00 0.00 0.00 3.21
561 567 1.815421 CCGCCCCGACTCTCAAATG 60.815 63.158 0.00 0.00 0.00 2.32
601 607 4.122776 CGATCCCTTATTGTTGTCAGAGG 58.877 47.826 0.00 0.00 0.00 3.69
606 612 2.919228 AGCCGATCCCTTATTGTTGTC 58.081 47.619 0.00 0.00 0.00 3.18
612 618 2.368875 CACACCTAGCCGATCCCTTATT 59.631 50.000 0.00 0.00 0.00 1.40
650 656 9.847224 AAAGATGTTAGGAGAGTAAAAAGTCAA 57.153 29.630 0.00 0.00 0.00 3.18
651 657 9.847224 AAAAGATGTTAGGAGAGTAAAAAGTCA 57.153 29.630 0.00 0.00 0.00 3.41
665 671 5.276868 CGCGGATCACTTAAAAGATGTTAGG 60.277 44.000 0.00 0.00 0.00 2.69
679 685 1.174783 ACTCACTAACGCGGATCACT 58.825 50.000 12.47 0.00 0.00 3.41
682 688 5.354054 TCTATTACTCACTAACGCGGATC 57.646 43.478 12.47 0.00 0.00 3.36
694 700 7.227873 TGTGGGTGAACATTTTCTATTACTCA 58.772 34.615 0.00 0.00 32.36 3.41
697 703 9.535878 TTTTTGTGGGTGAACATTTTCTATTAC 57.464 29.630 0.00 0.00 32.36 1.89
725 731 9.816787 TGTTCCTAAACATTTTCTATTACCCTT 57.183 29.630 0.00 0.00 40.45 3.95
777 783 4.512944 GGCTCATTGTACACATCGATCATT 59.487 41.667 0.00 0.00 0.00 2.57
778 784 4.060900 GGCTCATTGTACACATCGATCAT 58.939 43.478 0.00 0.00 0.00 2.45
779 785 3.457234 GGCTCATTGTACACATCGATCA 58.543 45.455 0.00 0.00 0.00 2.92
780 786 2.472861 CGGCTCATTGTACACATCGATC 59.527 50.000 0.00 0.00 0.00 3.69
781 787 2.100749 TCGGCTCATTGTACACATCGAT 59.899 45.455 0.00 0.00 0.00 3.59
782 788 1.474879 TCGGCTCATTGTACACATCGA 59.525 47.619 0.00 0.00 0.00 3.59
783 789 1.921243 TCGGCTCATTGTACACATCG 58.079 50.000 0.00 0.00 0.00 3.84
784 790 3.684788 ACTTTCGGCTCATTGTACACATC 59.315 43.478 0.00 0.00 0.00 3.06
882 888 0.796312 GTCACGTCGTGCATTTCCAT 59.204 50.000 20.56 0.00 32.98 3.41
928 934 2.738964 GCTCGCCGGAGATTTTAGAAGT 60.739 50.000 8.83 0.00 43.27 3.01
1053 1059 1.144057 GAACGTCATCAGGGCGGAT 59.856 57.895 0.00 0.00 0.00 4.18
1359 1365 0.032952 TCCTCACAAAACGGTCTCGG 59.967 55.000 0.00 0.00 41.39 4.63
1367 1391 7.730364 TTAGACAGAAATCTCCTCACAAAAC 57.270 36.000 0.00 0.00 0.00 2.43
1449 1474 2.218603 AGCCTTTTCCACTACAACGTG 58.781 47.619 0.00 0.00 34.71 4.49
1534 1566 5.563842 CGATATTCCTCTGACTGCAAAAAC 58.436 41.667 0.00 0.00 0.00 2.43
1557 1590 1.755179 ATCAGGTTAGTGGCATGTGC 58.245 50.000 0.00 0.00 41.14 4.57
1565 1598 7.556844 ACTAAGACACCATTATCAGGTTAGTG 58.443 38.462 0.00 0.00 37.23 2.74
1592 1625 6.800543 TGTTTTAAGTTGAGTAATTGCAGCA 58.199 32.000 0.00 0.00 0.00 4.41
1615 1648 5.261209 TGTCCAAGGAAAACAATCAACTG 57.739 39.130 0.00 0.00 0.00 3.16
1636 1669 1.108776 CCCTCCTTGGCATCAACATG 58.891 55.000 0.00 0.00 0.00 3.21
1653 1753 4.020543 TCCATACATAAAACAAGTGCCCC 58.979 43.478 0.00 0.00 0.00 5.80
1654 1754 5.047660 TGTTCCATACATAAAACAAGTGCCC 60.048 40.000 0.00 0.00 0.00 5.36
1655 1755 5.861787 GTGTTCCATACATAAAACAAGTGCC 59.138 40.000 0.00 0.00 39.39 5.01
1656 1756 6.442952 TGTGTTCCATACATAAAACAAGTGC 58.557 36.000 0.00 0.00 39.39 4.40
1657 1757 7.062138 GCATGTGTTCCATACATAAAACAAGTG 59.938 37.037 0.00 0.00 39.39 3.16
1658 1758 7.039784 AGCATGTGTTCCATACATAAAACAAGT 60.040 33.333 0.00 0.00 39.39 3.16
1659 1759 7.315142 AGCATGTGTTCCATACATAAAACAAG 58.685 34.615 0.00 0.00 39.39 3.16
1660 1760 7.176515 AGAGCATGTGTTCCATACATAAAACAA 59.823 33.333 0.00 0.00 39.39 2.83
1661 1761 6.658816 AGAGCATGTGTTCCATACATAAAACA 59.341 34.615 0.00 0.00 39.39 2.83
1662 1762 7.088589 AGAGCATGTGTTCCATACATAAAAC 57.911 36.000 0.00 0.00 39.39 2.43
1663 1763 8.673711 GTTAGAGCATGTGTTCCATACATAAAA 58.326 33.333 0.00 0.00 39.39 1.52
1664 1764 8.046708 AGTTAGAGCATGTGTTCCATACATAAA 58.953 33.333 0.00 0.00 39.39 1.40
1665 1765 7.564793 AGTTAGAGCATGTGTTCCATACATAA 58.435 34.615 0.00 0.00 39.39 1.90
1666 1766 7.124573 AGTTAGAGCATGTGTTCCATACATA 57.875 36.000 0.00 0.00 39.39 2.29
1667 1767 5.994250 AGTTAGAGCATGTGTTCCATACAT 58.006 37.500 0.00 0.00 39.39 2.29
1668 1768 5.420725 AGTTAGAGCATGTGTTCCATACA 57.579 39.130 0.00 0.00 30.71 2.29
1669 1769 8.141909 TGTATAGTTAGAGCATGTGTTCCATAC 58.858 37.037 0.00 0.00 30.71 2.39
1670 1770 8.245195 TGTATAGTTAGAGCATGTGTTCCATA 57.755 34.615 0.00 0.00 30.71 2.74
1671 1771 7.124573 TGTATAGTTAGAGCATGTGTTCCAT 57.875 36.000 0.00 0.00 0.00 3.41
1672 1772 6.538945 TGTATAGTTAGAGCATGTGTTCCA 57.461 37.500 0.00 0.00 0.00 3.53
1673 1773 7.710907 TGATTGTATAGTTAGAGCATGTGTTCC 59.289 37.037 0.00 0.00 0.00 3.62
1674 1774 8.648557 TGATTGTATAGTTAGAGCATGTGTTC 57.351 34.615 0.00 0.00 0.00 3.18
1675 1775 9.618890 ATTGATTGTATAGTTAGAGCATGTGTT 57.381 29.630 0.00 0.00 0.00 3.32
1676 1776 9.618890 AATTGATTGTATAGTTAGAGCATGTGT 57.381 29.630 0.00 0.00 0.00 3.72
1704 1804 9.860650 ACATGGTGCAATCCTTATAAGTAAATA 57.139 29.630 11.50 0.00 0.00 1.40
1705 1805 8.766994 ACATGGTGCAATCCTTATAAGTAAAT 57.233 30.769 11.50 0.00 0.00 1.40
1706 1806 9.337396 CTACATGGTGCAATCCTTATAAGTAAA 57.663 33.333 11.50 0.00 0.00 2.01
1707 1807 7.444183 GCTACATGGTGCAATCCTTATAAGTAA 59.556 37.037 11.50 0.00 0.00 2.24
1708 1808 6.934645 GCTACATGGTGCAATCCTTATAAGTA 59.065 38.462 11.50 0.00 0.00 2.24
1709 1809 5.765182 GCTACATGGTGCAATCCTTATAAGT 59.235 40.000 11.50 0.00 0.00 2.24
1710 1810 6.000219 AGCTACATGGTGCAATCCTTATAAG 59.000 40.000 13.32 5.43 0.00 1.73
1711 1811 5.940617 AGCTACATGGTGCAATCCTTATAA 58.059 37.500 13.32 0.00 0.00 0.98
1712 1812 5.071653 TGAGCTACATGGTGCAATCCTTATA 59.928 40.000 13.32 0.00 0.00 0.98
1713 1813 4.141413 TGAGCTACATGGTGCAATCCTTAT 60.141 41.667 13.32 0.00 0.00 1.73
1714 1814 3.199727 TGAGCTACATGGTGCAATCCTTA 59.800 43.478 13.32 0.00 0.00 2.69
1715 1815 2.025981 TGAGCTACATGGTGCAATCCTT 60.026 45.455 13.32 0.00 0.00 3.36
1716 1816 1.561076 TGAGCTACATGGTGCAATCCT 59.439 47.619 13.32 0.00 0.00 3.24
1717 1817 2.042686 TGAGCTACATGGTGCAATCC 57.957 50.000 13.32 0.00 0.00 3.01
1718 1818 3.003068 GTGATGAGCTACATGGTGCAATC 59.997 47.826 13.32 14.18 39.56 2.67
1719 1819 2.947652 GTGATGAGCTACATGGTGCAAT 59.052 45.455 13.32 7.31 39.56 3.56
1720 1820 2.290197 TGTGATGAGCTACATGGTGCAA 60.290 45.455 13.32 3.35 39.56 4.08
1721 1821 1.278699 TGTGATGAGCTACATGGTGCA 59.721 47.619 13.32 0.00 39.56 4.57
1722 1822 2.028420 TGTGATGAGCTACATGGTGC 57.972 50.000 0.00 0.27 39.56 5.01
1723 1823 4.193865 TGATTGTGATGAGCTACATGGTG 58.806 43.478 0.00 0.00 39.56 4.17
1724 1824 4.492494 TGATTGTGATGAGCTACATGGT 57.508 40.909 0.00 0.00 39.56 3.55
1725 1825 5.179555 CAGATGATTGTGATGAGCTACATGG 59.820 44.000 0.00 0.00 39.56 3.66
1726 1826 5.758784 ACAGATGATTGTGATGAGCTACATG 59.241 40.000 3.76 0.00 39.56 3.21
1790 1890 8.644216 ACCGGTAAGATTTTGGAAATTACTTTT 58.356 29.630 4.49 0.00 0.00 2.27
1807 1907 1.810151 GCAAATGAAGCACCGGTAAGA 59.190 47.619 6.87 0.00 0.00 2.10
1808 1908 1.539388 TGCAAATGAAGCACCGGTAAG 59.461 47.619 6.87 0.00 37.02 2.34
1813 1913 2.190161 CATGATGCAAATGAAGCACCG 58.810 47.619 6.87 0.00 45.95 4.94
1885 1985 5.101628 GCGTTTGCCATATTTGAATTCAGA 58.898 37.500 8.41 4.49 33.98 3.27
2077 2177 3.275271 ATTGGAGGCAAGCCCCCA 61.275 61.111 10.59 10.59 36.58 4.96
2151 2251 3.688272 CAGCAATTGCATTCTTACCTCG 58.312 45.455 30.89 2.13 45.16 4.63
2185 2285 1.620822 AAAGACCGGAGCAAAGCAAT 58.379 45.000 9.46 0.00 0.00 3.56
2187 2287 2.264005 TTAAAGACCGGAGCAAAGCA 57.736 45.000 9.46 0.00 0.00 3.91
2198 2298 8.617290 TGAGAGGACAGTAAAAATTAAAGACC 57.383 34.615 0.00 0.00 0.00 3.85
2226 2326 4.832248 ACTTCCTTGAAATGCTACGATCA 58.168 39.130 0.00 0.00 0.00 2.92
2258 2358 1.563879 TGGCACTGGTACCAATGCTAT 59.436 47.619 38.40 9.91 46.72 2.97
2263 2363 1.064003 TCAGTGGCACTGGTACCAAT 58.936 50.000 38.88 1.92 45.94 3.16
2269 2369 1.956477 GTGAAAATCAGTGGCACTGGT 59.044 47.619 38.88 33.70 45.94 4.00
2277 2377 4.672413 GCAAAAGAGACGTGAAAATCAGTG 59.328 41.667 0.00 0.00 0.00 3.66
2280 2380 3.882888 AGGCAAAAGAGACGTGAAAATCA 59.117 39.130 0.00 0.00 0.00 2.57
2305 2405 2.876581 ACAAGGGGATTTGTCAAGGAC 58.123 47.619 0.00 0.00 36.60 3.85
2328 2428 7.458409 AACACTTGTTCTCAGATGCATAAAT 57.542 32.000 0.00 0.00 31.64 1.40
2333 2433 5.122519 TGTAAACACTTGTTCTCAGATGCA 58.877 37.500 0.00 0.00 37.25 3.96
2357 2457 6.872920 TCCAAGACATGTTTTTGCTTAAAGT 58.127 32.000 15.01 0.00 0.00 2.66
2385 2485 9.703892 TCATTCATTCCGTTTCAAACAATTTAT 57.296 25.926 0.22 0.00 0.00 1.40
2428 2528 9.693739 TTAATCAATCCTTATGGAGCAGTTAAA 57.306 29.630 3.46 0.00 46.91 1.52
2432 2532 7.781693 ACAATTAATCAATCCTTATGGAGCAGT 59.218 33.333 3.46 0.00 46.91 4.40
2433 2533 8.174733 ACAATTAATCAATCCTTATGGAGCAG 57.825 34.615 3.46 0.00 46.91 4.24
2469 2569 1.977854 TGACAGGCATGTTCTAGTGGT 59.022 47.619 5.07 0.00 40.68 4.16
2472 2572 3.771479 TGATCTGACAGGCATGTTCTAGT 59.229 43.478 5.07 0.00 40.68 2.57
2515 2615 9.601217 CATATAGGTTGCTAGTGTTAAGAACTT 57.399 33.333 0.00 0.00 0.00 2.66
2516 2616 8.978472 TCATATAGGTTGCTAGTGTTAAGAACT 58.022 33.333 0.00 0.00 0.00 3.01
2517 2617 9.595823 TTCATATAGGTTGCTAGTGTTAAGAAC 57.404 33.333 0.00 0.00 0.00 3.01
2518 2618 9.817809 CTTCATATAGGTTGCTAGTGTTAAGAA 57.182 33.333 0.00 0.00 0.00 2.52
2519 2619 8.421784 CCTTCATATAGGTTGCTAGTGTTAAGA 58.578 37.037 0.00 0.00 0.00 2.10
2520 2620 8.204836 ACCTTCATATAGGTTGCTAGTGTTAAG 58.795 37.037 0.00 0.00 46.39 1.85
2553 2653 4.112634 GCCAAAACTTTCTCACAACTTCC 58.887 43.478 0.00 0.00 0.00 3.46
2577 2677 3.924114 TGGATCGGAGAAATAAAGCCA 57.076 42.857 0.00 0.00 43.58 4.75
2587 2687 7.560262 TCTCTAAAAGAGTAATTGGATCGGAGA 59.440 37.037 3.98 0.00 42.83 3.71
2591 2691 9.534565 TCATTCTCTAAAAGAGTAATTGGATCG 57.465 33.333 3.98 0.00 42.83 3.69
2636 2739 3.244345 CGCGTGTGAGTTACTTTTCTCAA 59.756 43.478 0.00 0.00 41.41 3.02
2639 2742 2.793232 GTCGCGTGTGAGTTACTTTTCT 59.207 45.455 5.77 0.00 0.00 2.52
2640 2743 2.536803 TGTCGCGTGTGAGTTACTTTTC 59.463 45.455 5.77 0.00 0.00 2.29
2644 2747 0.382873 TGTGTCGCGTGTGAGTTACT 59.617 50.000 5.77 0.00 0.00 2.24
2645 2748 1.415374 ATGTGTCGCGTGTGAGTTAC 58.585 50.000 5.77 0.00 0.00 2.50
2646 2749 2.143008 AATGTGTCGCGTGTGAGTTA 57.857 45.000 5.77 0.00 0.00 2.24
2648 2751 1.003972 CAAAATGTGTCGCGTGTGAGT 60.004 47.619 5.77 0.00 0.00 3.41
2649 2752 1.003972 ACAAAATGTGTCGCGTGTGAG 60.004 47.619 5.77 0.00 34.38 3.51
2652 2755 1.529438 CCTACAAAATGTGTCGCGTGT 59.471 47.619 5.77 2.58 41.98 4.49
2653 2756 1.795872 TCCTACAAAATGTGTCGCGTG 59.204 47.619 5.77 0.00 41.98 5.34
2654 2757 2.157834 TCCTACAAAATGTGTCGCGT 57.842 45.000 5.77 0.00 41.98 6.01
2655 2758 2.734606 TCTTCCTACAAAATGTGTCGCG 59.265 45.455 0.00 0.00 41.98 5.87
2656 2759 4.742438 TTCTTCCTACAAAATGTGTCGC 57.258 40.909 0.00 0.00 41.98 5.19
2657 2760 6.015504 CGATTTCTTCCTACAAAATGTGTCG 58.984 40.000 0.00 0.00 41.98 4.35
2658 2761 6.899114 ACGATTTCTTCCTACAAAATGTGTC 58.101 36.000 0.00 0.00 41.98 3.67
2720 2823 8.702819 TGATTACAGATGACAGATGAGAGAAAT 58.297 33.333 0.00 0.00 0.00 2.17
2727 2830 5.814188 GCAACTGATTACAGATGACAGATGA 59.186 40.000 10.69 0.00 45.55 2.92
2728 2831 5.583457 TGCAACTGATTACAGATGACAGATG 59.417 40.000 10.69 0.00 45.55 2.90
2729 2832 5.737860 TGCAACTGATTACAGATGACAGAT 58.262 37.500 10.69 0.00 45.55 2.90
2730 2833 5.151297 TGCAACTGATTACAGATGACAGA 57.849 39.130 10.69 0.00 45.55 3.41
2731 2834 5.816258 AGATGCAACTGATTACAGATGACAG 59.184 40.000 10.69 0.00 45.55 3.51
2732 2835 5.737860 AGATGCAACTGATTACAGATGACA 58.262 37.500 10.69 8.54 45.55 3.58
2733 2836 6.073873 GCTAGATGCAACTGATTACAGATGAC 60.074 42.308 6.76 4.24 45.55 3.06
2765 2868 7.487484 TGTCACATTAGCAGAAATGTTGAAAA 58.513 30.769 8.78 2.78 45.54 2.29
2767 2870 6.631971 TGTCACATTAGCAGAAATGTTGAA 57.368 33.333 8.78 0.00 45.54 2.69
2768 2871 5.335113 GCTGTCACATTAGCAGAAATGTTGA 60.335 40.000 8.78 7.86 45.54 3.18
2769 2872 4.855388 GCTGTCACATTAGCAGAAATGTTG 59.145 41.667 8.78 6.22 45.54 3.33
2770 2873 4.520111 TGCTGTCACATTAGCAGAAATGTT 59.480 37.500 8.78 0.00 45.54 2.71
2799 2904 9.613428 CTTTGTTCACCCTAGATATGTTAATGA 57.387 33.333 0.00 0.00 0.00 2.57
2809 2914 5.779241 TCATTCCTTTGTTCACCCTAGAT 57.221 39.130 0.00 0.00 0.00 1.98
2905 3010 4.620982 AGTATGCAAAAGGAACAGCAAAC 58.379 39.130 0.00 0.00 40.76 2.93
2992 3097 0.518636 CAATCAGTCCTTGTGCACCG 59.481 55.000 15.69 5.26 0.00 4.94
2998 3103 0.773644 ACCAGCCAATCAGTCCTTGT 59.226 50.000 0.00 0.00 0.00 3.16
3044 3149 5.806654 AGTTCAACAAGGGCATTTGTATT 57.193 34.783 6.99 0.00 40.24 1.89
3045 3150 6.010219 ACTAGTTCAACAAGGGCATTTGTAT 58.990 36.000 6.99 0.00 40.24 2.29
3046 3151 5.381757 ACTAGTTCAACAAGGGCATTTGTA 58.618 37.500 6.99 0.00 40.24 2.41
3048 3153 4.853924 ACTAGTTCAACAAGGGCATTTG 57.146 40.909 0.00 0.12 0.00 2.32
3071 3177 1.341482 TGAACCTCCAAGCCACAAACA 60.341 47.619 0.00 0.00 0.00 2.83
3083 3189 1.963172 AAAACGAGTGGTGAACCTCC 58.037 50.000 0.37 0.00 36.82 4.30
3107 3213 6.107901 ACTCAGATGCTGGTTCCTAATATC 57.892 41.667 0.00 0.00 31.51 1.63
3339 3445 1.406539 GCATCATTCCCTGCAACGAAT 59.593 47.619 2.75 2.75 38.28 3.34
3386 3492 7.443259 AACGGAAGCTAAGCATAGTTTTTAA 57.557 32.000 0.00 0.00 33.32 1.52
3419 3525 9.063615 CCCTGGTCATAACAAATAATTAGGTAC 57.936 37.037 0.00 0.00 0.00 3.34
3421 3527 7.066781 CCCCTGGTCATAACAAATAATTAGGT 58.933 38.462 0.00 0.00 0.00 3.08
3607 3713 9.185680 ACCAATTAAGAACAGAAGTTTAACACT 57.814 29.630 0.00 0.00 38.30 3.55
3624 3730 6.092533 GGGAATGAATGTGCAAACCAATTAAG 59.907 38.462 0.00 0.00 0.00 1.85
3648 3754 4.600062 ACTCAAACATTAAGGGGCTAAGG 58.400 43.478 0.00 0.00 0.00 2.69
3681 3787 4.744795 AGCCAGGTTACACTTCATAGAG 57.255 45.455 0.00 0.00 0.00 2.43
3691 3797 7.775053 AAAAATTGATTCTAGCCAGGTTACA 57.225 32.000 0.00 0.00 0.00 2.41
3740 3853 6.599244 TCAATATTGGTCGATGCTTTTCTTCT 59.401 34.615 15.36 0.00 0.00 2.85
3744 3857 6.363577 TCTCAATATTGGTCGATGCTTTTC 57.636 37.500 15.36 0.00 0.00 2.29
3825 3939 1.573829 GCCGCGTGAAAAGATGGTGA 61.574 55.000 4.92 0.00 0.00 4.02
3880 3994 7.820386 TCGGTGATTAAGCTACAAGAATGTAAA 59.180 33.333 0.00 0.00 41.36 2.01
3881 3995 7.324935 TCGGTGATTAAGCTACAAGAATGTAA 58.675 34.615 0.00 0.00 41.36 2.41
3882 3996 6.869695 TCGGTGATTAAGCTACAAGAATGTA 58.130 36.000 0.00 0.00 41.05 2.29
4040 4154 6.091986 TCAACAAAAGAGCCAAACAAATCAAC 59.908 34.615 0.00 0.00 0.00 3.18
4096 4210 5.674052 ATCAGCTTATGAGTCAGAACTGT 57.326 39.130 19.93 11.15 42.53 3.55
4180 4294 1.135402 CGTGAACAAATGGCTTAGGGC 60.135 52.381 0.00 0.00 40.90 5.19
4308 4425 7.486551 GTGACCGCTGAATTATAGATATCACTC 59.513 40.741 5.32 0.00 31.18 3.51
4326 4443 1.403780 GGTTATCGACTTGTGACCGCT 60.404 52.381 0.00 0.00 0.00 5.52
4382 4528 9.950496 ATACAGTGATTACCCAAGATTATCATC 57.050 33.333 0.00 0.00 0.00 2.92
4412 4558 4.260948 GCATAGCTGCTGAAGTAAACATCC 60.261 45.833 13.43 0.00 45.32 3.51
4682 4837 5.361285 GGATCCGCTCTATACACAGGATAAT 59.639 44.000 0.00 0.00 38.47 1.28
4734 4889 0.808453 TTGAGTATAAGCCACGCCGC 60.808 55.000 0.00 0.00 0.00 6.53
4758 4924 2.008752 ATCGTGTGATGCATCGACAA 57.991 45.000 24.17 15.24 35.02 3.18
4793 4959 1.800805 CAGATACATCGACATGGCCC 58.199 55.000 0.00 0.00 33.82 5.80
4888 5060 7.048629 TGTTTTCAGAATTACAAATCTGCCA 57.951 32.000 2.70 0.00 42.21 4.92
4968 5140 7.096023 GCCGAGATTTATTATGTGTGACTACAG 60.096 40.741 0.00 0.00 37.52 2.74
5035 5207 8.607459 CGTGCTAATGAAGATAAGAGTTCAATT 58.393 33.333 0.00 0.00 36.31 2.32
5036 5208 7.254590 GCGTGCTAATGAAGATAAGAGTTCAAT 60.255 37.037 0.00 0.00 36.31 2.57
5037 5209 6.036083 GCGTGCTAATGAAGATAAGAGTTCAA 59.964 38.462 0.00 0.00 36.31 2.69
5068 5240 6.018832 GCAAAATGTGTGACTACAGCAAAATT 60.019 34.615 0.00 0.00 37.52 1.82
5069 5241 5.463061 GCAAAATGTGTGACTACAGCAAAAT 59.537 36.000 0.00 0.00 37.52 1.82
5070 5242 4.803088 GCAAAATGTGTGACTACAGCAAAA 59.197 37.500 0.00 0.00 37.52 2.44
5071 5243 4.358851 GCAAAATGTGTGACTACAGCAAA 58.641 39.130 0.00 0.00 37.52 3.68
5072 5244 3.547813 CGCAAAATGTGTGACTACAGCAA 60.548 43.478 0.00 0.00 40.42 3.91
5073 5245 2.032117 CGCAAAATGTGTGACTACAGCA 60.032 45.455 0.00 0.00 40.42 4.41
5074 5246 2.574322 CGCAAAATGTGTGACTACAGC 58.426 47.619 0.00 0.00 40.42 4.40
5075 5247 2.095768 CCCGCAAAATGTGTGACTACAG 60.096 50.000 0.00 0.00 40.42 2.74
5076 5248 1.876799 CCCGCAAAATGTGTGACTACA 59.123 47.619 0.00 0.00 40.42 2.74
5077 5249 1.877443 ACCCGCAAAATGTGTGACTAC 59.123 47.619 0.00 0.00 40.42 2.73
5078 5250 1.876799 CACCCGCAAAATGTGTGACTA 59.123 47.619 0.00 0.00 40.42 2.59
5079 5251 0.667993 CACCCGCAAAATGTGTGACT 59.332 50.000 0.00 0.00 40.42 3.41
5157 5347 6.899892 AGGAGGAGGAAAGAGATGTTAATT 57.100 37.500 0.00 0.00 0.00 1.40
5162 5352 3.111484 GGAAGGAGGAGGAAAGAGATGT 58.889 50.000 0.00 0.00 0.00 3.06
5164 5354 3.779738 CAAGGAAGGAGGAGGAAAGAGAT 59.220 47.826 0.00 0.00 0.00 2.75
5170 5360 3.073062 CAGAAACAAGGAAGGAGGAGGAA 59.927 47.826 0.00 0.00 0.00 3.36
5171 5361 2.639839 CAGAAACAAGGAAGGAGGAGGA 59.360 50.000 0.00 0.00 0.00 3.71
5172 5362 2.373502 ACAGAAACAAGGAAGGAGGAGG 59.626 50.000 0.00 0.00 0.00 4.30
5173 5363 3.669536 GACAGAAACAAGGAAGGAGGAG 58.330 50.000 0.00 0.00 0.00 3.69
5174 5364 2.037251 CGACAGAAACAAGGAAGGAGGA 59.963 50.000 0.00 0.00 0.00 3.71
5175 5365 2.037251 TCGACAGAAACAAGGAAGGAGG 59.963 50.000 0.00 0.00 0.00 4.30
5176 5366 3.243907 ACTCGACAGAAACAAGGAAGGAG 60.244 47.826 0.00 0.00 0.00 3.69
5177 5367 2.698797 ACTCGACAGAAACAAGGAAGGA 59.301 45.455 0.00 0.00 0.00 3.36
5178 5368 3.060602 GACTCGACAGAAACAAGGAAGG 58.939 50.000 0.00 0.00 0.00 3.46
5179 5369 2.726760 CGACTCGACAGAAACAAGGAAG 59.273 50.000 0.00 0.00 0.00 3.46
5195 5394 3.390135 TCACAATTTGAGGACACGACTC 58.610 45.455 2.79 0.00 35.55 3.36
5291 5491 8.160106 AGAGGGGCTAATTACATGAGAAATAAG 58.840 37.037 0.00 0.00 0.00 1.73
5373 5575 6.485830 TTTTCCGGATATCACTTGAGATCT 57.514 37.500 4.15 0.00 41.24 2.75
5418 5626 7.068839 CACCTCGCCTATTTATATCCAGTCTAT 59.931 40.741 0.00 0.00 0.00 1.98
5424 5632 3.517901 CCCACCTCGCCTATTTATATCCA 59.482 47.826 0.00 0.00 0.00 3.41
5436 5644 2.100989 CCTATATACTCCCACCTCGCC 58.899 57.143 0.00 0.00 0.00 5.54
5467 5676 2.420022 GCTCGTGTTGCCAGTATCAAAT 59.580 45.455 0.00 0.00 0.00 2.32
5468 5677 1.804151 GCTCGTGTTGCCAGTATCAAA 59.196 47.619 0.00 0.00 0.00 2.69
5469 5678 1.001974 AGCTCGTGTTGCCAGTATCAA 59.998 47.619 0.00 0.00 0.00 2.57
5471 5680 2.464865 CTAGCTCGTGTTGCCAGTATC 58.535 52.381 0.00 0.00 0.00 2.24
5472 5681 1.471676 GCTAGCTCGTGTTGCCAGTAT 60.472 52.381 7.70 0.00 0.00 2.12
5476 5685 1.079819 GAGCTAGCTCGTGTTGCCA 60.080 57.895 28.04 0.00 33.06 4.92
5477 5686 1.079819 TGAGCTAGCTCGTGTTGCC 60.080 57.895 33.55 13.61 45.48 4.52
5484 5693 0.528017 TGACCAACTGAGCTAGCTCG 59.472 55.000 33.55 28.91 45.48 5.03
5486 5695 2.093764 GTCATGACCAACTGAGCTAGCT 60.094 50.000 19.45 19.45 0.00 3.32
5487 5696 2.275318 GTCATGACCAACTGAGCTAGC 58.725 52.381 15.31 6.62 0.00 3.42
5507 5716 0.727970 CTCTGGTCCACTACGAGACG 59.272 60.000 0.44 0.00 37.95 4.18
5510 5719 0.811915 CACCTCTGGTCCACTACGAG 59.188 60.000 0.00 0.00 31.02 4.18
5519 5728 3.402628 TTGAACTTAGCACCTCTGGTC 57.597 47.619 0.00 0.00 31.02 4.02
5531 5740 4.534500 TGCTAGTGAGGGGAATTGAACTTA 59.466 41.667 0.00 0.00 0.00 2.24
5532 5741 3.330701 TGCTAGTGAGGGGAATTGAACTT 59.669 43.478 0.00 0.00 0.00 2.66
5606 5815 0.321653 GAGAACGAACCAGCCCATGT 60.322 55.000 0.00 0.00 0.00 3.21
5607 5816 1.361668 CGAGAACGAACCAGCCCATG 61.362 60.000 0.00 0.00 42.66 3.66
5608 5817 1.079127 CGAGAACGAACCAGCCCAT 60.079 57.895 0.00 0.00 42.66 4.00
5609 5818 2.342279 CGAGAACGAACCAGCCCA 59.658 61.111 0.00 0.00 42.66 5.36
5617 6659 3.168628 GTTCGTCACCGAGAACGAA 57.831 52.632 12.61 12.61 45.24 3.85
5625 6667 1.453148 GGTTAGTTTCGTTCGTCACCG 59.547 52.381 0.00 0.00 0.00 4.94
5633 6675 4.550422 GTCTTCCTACGGTTAGTTTCGTT 58.450 43.478 0.00 0.00 40.31 3.85
5635 6677 3.057315 TGGTCTTCCTACGGTTAGTTTCG 60.057 47.826 0.00 0.00 34.23 3.46
5649 6691 1.080025 CTCCCGTCGTTGGTCTTCC 60.080 63.158 0.00 0.00 0.00 3.46
5680 6722 1.663702 CCGTCGTCTTCGCTTTGGT 60.664 57.895 0.00 0.00 36.96 3.67
5681 6723 1.372499 TCCGTCGTCTTCGCTTTGG 60.372 57.895 0.00 0.00 36.96 3.28
5683 6725 1.372623 GGTCCGTCGTCTTCGCTTT 60.373 57.895 0.00 0.00 36.96 3.51
5684 6726 2.079020 TTGGTCCGTCGTCTTCGCTT 62.079 55.000 0.00 0.00 36.96 4.68
5685 6727 2.079020 TTTGGTCCGTCGTCTTCGCT 62.079 55.000 0.00 0.00 36.96 4.93
5686 6728 1.012486 ATTTGGTCCGTCGTCTTCGC 61.012 55.000 0.00 0.00 36.96 4.70
5687 6729 1.425412 AATTTGGTCCGTCGTCTTCG 58.575 50.000 0.00 0.00 38.55 3.79
5688 6730 3.308866 CCATAATTTGGTCCGTCGTCTTC 59.691 47.826 0.00 0.00 40.99 2.87
5689 6731 3.267483 CCATAATTTGGTCCGTCGTCTT 58.733 45.455 0.00 0.00 40.99 3.01
5690 6732 2.419574 CCCATAATTTGGTCCGTCGTCT 60.420 50.000 0.00 0.00 44.83 4.18
5691 6733 1.937899 CCCATAATTTGGTCCGTCGTC 59.062 52.381 0.00 0.00 44.83 4.20
5692 6734 1.555992 TCCCATAATTTGGTCCGTCGT 59.444 47.619 0.00 0.00 44.83 4.34
5693 6735 2.210116 CTCCCATAATTTGGTCCGTCG 58.790 52.381 6.09 0.00 44.83 5.12
5694 6736 2.171870 TCCTCCCATAATTTGGTCCGTC 59.828 50.000 6.09 0.00 44.83 4.79
5695 6737 2.201830 TCCTCCCATAATTTGGTCCGT 58.798 47.619 6.09 0.00 44.83 4.69
5696 6738 3.118038 TCTTCCTCCCATAATTTGGTCCG 60.118 47.826 6.09 0.00 44.83 4.79
5697 6739 4.519906 TCTTCCTCCCATAATTTGGTCC 57.480 45.455 6.09 0.00 44.83 4.46
5698 6740 4.339530 GCTTCTTCCTCCCATAATTTGGTC 59.660 45.833 6.09 0.00 44.83 4.02
5699 6741 4.281657 GCTTCTTCCTCCCATAATTTGGT 58.718 43.478 6.09 0.00 44.83 3.67
5700 6742 3.316308 CGCTTCTTCCTCCCATAATTTGG 59.684 47.826 0.00 0.00 46.00 3.28
5701 6743 4.199310 TCGCTTCTTCCTCCCATAATTTG 58.801 43.478 0.00 0.00 0.00 2.32
5702 6744 4.503714 TCGCTTCTTCCTCCCATAATTT 57.496 40.909 0.00 0.00 0.00 1.82
5703 6745 4.713792 ATCGCTTCTTCCTCCCATAATT 57.286 40.909 0.00 0.00 0.00 1.40
5704 6746 4.323104 GCTATCGCTTCTTCCTCCCATAAT 60.323 45.833 0.00 0.00 0.00 1.28
5705 6747 3.006967 GCTATCGCTTCTTCCTCCCATAA 59.993 47.826 0.00 0.00 0.00 1.90
5706 6748 2.563179 GCTATCGCTTCTTCCTCCCATA 59.437 50.000 0.00 0.00 0.00 2.74
5707 6749 1.346068 GCTATCGCTTCTTCCTCCCAT 59.654 52.381 0.00 0.00 0.00 4.00
5708 6750 0.753262 GCTATCGCTTCTTCCTCCCA 59.247 55.000 0.00 0.00 0.00 4.37
5709 6751 0.034198 GGCTATCGCTTCTTCCTCCC 59.966 60.000 0.00 0.00 36.09 4.30
5710 6752 0.034198 GGGCTATCGCTTCTTCCTCC 59.966 60.000 0.00 0.00 36.09 4.30
5711 6753 0.753262 TGGGCTATCGCTTCTTCCTC 59.247 55.000 0.00 0.00 36.09 3.71
5712 6754 1.428869 ATGGGCTATCGCTTCTTCCT 58.571 50.000 0.00 0.00 36.09 3.36
5713 6755 2.262423 AATGGGCTATCGCTTCTTCC 57.738 50.000 0.00 0.00 36.09 3.46
5714 6756 5.948992 ATAAAATGGGCTATCGCTTCTTC 57.051 39.130 0.00 0.00 36.09 2.87
5715 6757 8.409358 AATAATAAAATGGGCTATCGCTTCTT 57.591 30.769 0.00 0.00 36.09 2.52
5716 6758 9.167311 CTAATAATAAAATGGGCTATCGCTTCT 57.833 33.333 0.00 0.00 36.09 2.85
5717 6759 8.398665 CCTAATAATAAAATGGGCTATCGCTTC 58.601 37.037 0.00 0.00 36.09 3.86
5718 6760 7.339466 CCCTAATAATAAAATGGGCTATCGCTT 59.661 37.037 0.00 0.00 36.09 4.68
5719 6761 6.828785 CCCTAATAATAAAATGGGCTATCGCT 59.171 38.462 0.00 0.00 36.09 4.93
5720 6762 6.826741 TCCCTAATAATAAAATGGGCTATCGC 59.173 38.462 0.00 0.00 34.89 4.58
5721 6763 8.801882 TTCCCTAATAATAAAATGGGCTATCG 57.198 34.615 0.00 0.00 34.89 2.92
5725 6767 9.093458 CATCTTTCCCTAATAATAAAATGGGCT 57.907 33.333 0.00 0.00 34.89 5.19
5726 6768 9.088987 TCATCTTTCCCTAATAATAAAATGGGC 57.911 33.333 0.00 0.00 34.89 5.36
5733 6775 9.225682 ACAGAGGTCATCTTTCCCTAATAATAA 57.774 33.333 0.00 0.00 35.47 1.40
5734 6776 8.798975 ACAGAGGTCATCTTTCCCTAATAATA 57.201 34.615 0.00 0.00 35.47 0.98
5735 6777 7.698163 ACAGAGGTCATCTTTCCCTAATAAT 57.302 36.000 0.00 0.00 35.47 1.28
5736 6778 8.798975 ATACAGAGGTCATCTTTCCCTAATAA 57.201 34.615 0.00 0.00 35.47 1.40
5737 6779 9.535170 CTATACAGAGGTCATCTTTCCCTAATA 57.465 37.037 0.00 0.00 35.47 0.98
5738 6780 7.038658 GCTATACAGAGGTCATCTTTCCCTAAT 60.039 40.741 0.00 0.00 35.47 1.73
5739 6781 6.267928 GCTATACAGAGGTCATCTTTCCCTAA 59.732 42.308 0.00 0.00 35.47 2.69
5740 6782 5.775701 GCTATACAGAGGTCATCTTTCCCTA 59.224 44.000 0.00 0.00 35.47 3.53
5741 6783 4.591072 GCTATACAGAGGTCATCTTTCCCT 59.409 45.833 0.00 0.00 35.47 4.20
5742 6784 4.591072 AGCTATACAGAGGTCATCTTTCCC 59.409 45.833 0.00 0.00 35.47 3.97
5743 6785 5.303078 TCAGCTATACAGAGGTCATCTTTCC 59.697 44.000 0.00 0.00 35.47 3.13
5744 6786 6.398234 TCAGCTATACAGAGGTCATCTTTC 57.602 41.667 0.00 0.00 35.47 2.62
5745 6787 6.552725 TCATCAGCTATACAGAGGTCATCTTT 59.447 38.462 0.00 0.00 35.47 2.52
5746 6788 6.073981 TCATCAGCTATACAGAGGTCATCTT 58.926 40.000 0.00 0.00 35.47 2.40
5747 6789 5.639139 TCATCAGCTATACAGAGGTCATCT 58.361 41.667 0.00 0.00 39.56 2.90
5748 6790 5.973899 TCATCAGCTATACAGAGGTCATC 57.026 43.478 0.00 0.00 0.00 2.92
5782 6824 5.999205 AGGTTTGGCATATTGTTTGATGA 57.001 34.783 0.00 0.00 0.00 2.92
5835 6909 5.167303 TGCATGTATTAGTGTGGGTAACA 57.833 39.130 0.00 0.00 36.04 2.41
5871 6945 4.853924 ACCTGAAACAAAATAGGCAGTG 57.146 40.909 0.00 0.00 33.57 3.66
5872 6946 5.830991 TGTAACCTGAAACAAAATAGGCAGT 59.169 36.000 0.00 0.00 33.57 4.40
5875 6949 6.589907 CCAATGTAACCTGAAACAAAATAGGC 59.410 38.462 0.00 0.00 33.57 3.93
5932 7006 1.208052 TGGTGAGCTGAGCCTAATGAC 59.792 52.381 0.00 0.00 0.00 3.06
5956 7030 2.360350 AGCAGTGTCAATGCCCCG 60.360 61.111 20.90 0.00 44.97 5.73
5971 7045 3.118847 TGAGAAGGATCATCAGTGACAGC 60.119 47.826 0.00 0.00 37.14 4.40
6115 7190 2.887738 AAACAAGGGGGCCAGTGCAA 62.888 55.000 4.39 0.00 40.13 4.08
6169 7244 2.426842 AGCAGCCTTACCCAAGAATC 57.573 50.000 0.00 0.00 33.20 2.52
6242 7322 3.317149 CGACATGTATTTCGGTAGAGGGA 59.683 47.826 0.00 0.00 0.00 4.20
6243 7323 3.639538 CGACATGTATTTCGGTAGAGGG 58.360 50.000 0.00 0.00 0.00 4.30
6245 7325 3.731216 CAGCGACATGTATTTCGGTAGAG 59.269 47.826 8.74 0.00 43.70 2.43
6246 7326 3.490249 CCAGCGACATGTATTTCGGTAGA 60.490 47.826 8.74 0.00 43.70 2.59
6247 7327 2.794910 CCAGCGACATGTATTTCGGTAG 59.205 50.000 8.74 0.00 43.70 3.18
6248 7328 2.427812 TCCAGCGACATGTATTTCGGTA 59.572 45.455 8.74 0.00 43.70 4.02
6249 7329 1.206132 TCCAGCGACATGTATTTCGGT 59.794 47.619 0.00 0.07 46.29 4.69
6250 7330 1.860950 CTCCAGCGACATGTATTTCGG 59.139 52.381 0.00 0.00 35.73 4.30
6251 7331 2.540515 ACTCCAGCGACATGTATTTCG 58.459 47.619 0.00 0.00 38.31 3.46
6252 7332 3.491267 GCTACTCCAGCGACATGTATTTC 59.509 47.826 0.00 0.00 41.37 2.17
6253 7333 3.458189 GCTACTCCAGCGACATGTATTT 58.542 45.455 0.00 0.00 41.37 1.40
6254 7334 3.099267 GCTACTCCAGCGACATGTATT 57.901 47.619 0.00 0.00 41.37 1.89
6266 7346 4.354087 TGATATACTCCCTCAGCTACTCCA 59.646 45.833 0.00 0.00 0.00 3.86
6267 7347 4.703093 GTGATATACTCCCTCAGCTACTCC 59.297 50.000 0.00 0.00 0.00 3.85
6268 7348 5.317808 TGTGATATACTCCCTCAGCTACTC 58.682 45.833 0.00 0.00 0.00 2.59
6269 7349 5.326283 TGTGATATACTCCCTCAGCTACT 57.674 43.478 0.00 0.00 0.00 2.57
6270 7350 6.597832 ATTGTGATATACTCCCTCAGCTAC 57.402 41.667 0.00 0.00 0.00 3.58
6271 7351 7.618019 AAATTGTGATATACTCCCTCAGCTA 57.382 36.000 0.00 0.00 0.00 3.32
6272 7352 6.506538 AAATTGTGATATACTCCCTCAGCT 57.493 37.500 0.00 0.00 0.00 4.24
6273 7353 6.514048 GCAAAATTGTGATATACTCCCTCAGC 60.514 42.308 0.00 0.00 0.00 4.26
6274 7354 6.543465 TGCAAAATTGTGATATACTCCCTCAG 59.457 38.462 0.00 0.00 0.00 3.35
6275 7355 6.422333 TGCAAAATTGTGATATACTCCCTCA 58.578 36.000 0.00 0.00 0.00 3.86
6276 7356 6.942532 TGCAAAATTGTGATATACTCCCTC 57.057 37.500 0.00 0.00 0.00 4.30
6277 7357 6.239120 GCATGCAAAATTGTGATATACTCCCT 60.239 38.462 14.21 0.00 0.00 4.20
6278 7358 5.922544 GCATGCAAAATTGTGATATACTCCC 59.077 40.000 14.21 0.00 0.00 4.30
6281 7361 7.104043 ACTGCATGCAAAATTGTGATATACT 57.896 32.000 22.88 0.00 0.00 2.12
6283 7363 9.070179 AGATACTGCATGCAAAATTGTGATATA 57.930 29.630 22.88 0.45 0.00 0.86
6288 7368 5.404096 TGAGATACTGCATGCAAAATTGTG 58.596 37.500 22.88 10.56 0.00 3.33
6289 7369 5.648178 TGAGATACTGCATGCAAAATTGT 57.352 34.783 22.88 17.46 0.00 2.71
6290 7370 6.978659 AGAATGAGATACTGCATGCAAAATTG 59.021 34.615 22.88 12.11 0.00 2.32
6291 7371 6.978659 CAGAATGAGATACTGCATGCAAAATT 59.021 34.615 22.88 12.62 39.69 1.82
6327 7753 1.238439 ATCGGAGCACACACTTTTGG 58.762 50.000 0.00 0.00 0.00 3.28
6343 7769 3.998099 TCTGGCAGACAAGATCTATCG 57.002 47.619 14.43 0.00 35.15 2.92
6359 7785 6.677913 CCTTTTGGTACATACAAAGTTCTGG 58.322 40.000 0.00 0.00 39.30 3.86
6361 7787 6.016276 CAGCCTTTTGGTACATACAAAGTTCT 60.016 38.462 0.00 0.00 42.99 3.01
6362 7788 6.149633 CAGCCTTTTGGTACATACAAAGTTC 58.850 40.000 0.00 0.00 42.99 3.01
6423 7907 7.973388 CCATACCGTTGATCAAAACATAACAAT 59.027 33.333 10.35 0.00 0.00 2.71
6451 7935 2.805671 TCAGGTGCATGAAAACGTACAG 59.194 45.455 0.00 0.00 0.00 2.74
6459 7943 3.713858 CACACTTTCAGGTGCATGAAA 57.286 42.857 13.40 13.40 44.72 2.69
6497 7981 5.999205 TCTAAGTAAAACGATGGGGTACA 57.001 39.130 0.00 0.00 0.00 2.90
6520 8004 2.916702 AAGTGTCATCTGTCACTGCA 57.083 45.000 10.15 0.00 42.05 4.41
6526 8010 4.656041 GCAGCATAAAAGTGTCATCTGTC 58.344 43.478 0.00 0.00 0.00 3.51
6531 8015 4.970662 AATCGCAGCATAAAAGTGTCAT 57.029 36.364 0.00 0.00 0.00 3.06
6532 8016 4.764679 AAATCGCAGCATAAAAGTGTCA 57.235 36.364 0.00 0.00 0.00 3.58
6533 8017 6.575201 GCTATAAATCGCAGCATAAAAGTGTC 59.425 38.462 0.00 0.00 35.35 3.67
6534 8018 6.430451 GCTATAAATCGCAGCATAAAAGTGT 58.570 36.000 0.00 0.00 35.35 3.55
6535 8019 5.853282 GGCTATAAATCGCAGCATAAAAGTG 59.147 40.000 0.00 0.00 37.02 3.16
6536 8020 5.048713 GGGCTATAAATCGCAGCATAAAAGT 60.049 40.000 0.00 0.00 37.02 2.66
6537 8021 5.048782 TGGGCTATAAATCGCAGCATAAAAG 60.049 40.000 0.00 0.00 37.02 2.27
6545 8029 5.003804 ACCTTAATGGGCTATAAATCGCAG 58.996 41.667 0.00 0.00 41.11 5.18
6554 8038 3.973973 TCAGTAGCACCTTAATGGGCTAT 59.026 43.478 16.40 4.99 42.38 2.97
6649 8388 6.410048 GTCCGAAAACACTTTTAACTTCGAAG 59.590 38.462 23.43 23.43 31.94 3.79
6652 8391 5.561993 TGTCCGAAAACACTTTTAACTTCG 58.438 37.500 0.00 0.00 31.94 3.79
6668 8407 1.340248 GACTTCACAGACCTGTCCGAA 59.660 52.381 0.00 1.85 42.83 4.30
6755 8495 2.687935 CCAACAACCATCCCTAAATCCG 59.312 50.000 0.00 0.00 0.00 4.18
6771 8511 3.265791 GTCATTTTTGCCACAACCAACA 58.734 40.909 0.00 0.00 0.00 3.33
6788 8528 5.240780 TCCGACATGGTATGATCCTGTCAT 61.241 45.833 0.00 0.00 42.93 3.06
6803 8543 3.118992 TCAGACTTTGGAGATCCGACATG 60.119 47.826 0.00 0.00 39.43 3.21
6805 8545 2.525368 TCAGACTTTGGAGATCCGACA 58.475 47.619 0.00 0.00 39.43 4.35
6816 8562 3.754965 TCCAAGATGGGTTCAGACTTTG 58.245 45.455 0.00 0.00 38.32 2.77
6932 8678 1.146930 GCATCGCAGGGGAAGATCA 59.853 57.895 0.00 0.00 0.00 2.92
7006 8755 5.937540 GCAGACAGATAGATAGAGCTAGACA 59.062 44.000 0.00 0.00 0.00 3.41
7043 8792 2.373938 GAAGATTCGGTGCGGTCAG 58.626 57.895 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.