Multiple sequence alignment - TraesCS7B01G134100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G134100 chr7B 100.000 2900 0 0 620 3519 163478541 163481440 0.000000e+00 5356.0
1 TraesCS7B01G134100 chr7B 100.000 370 0 0 1 370 163477922 163478291 0.000000e+00 684.0
2 TraesCS7B01G134100 chr7B 95.041 121 6 0 2573 2693 143329517 143329397 1.290000e-44 191.0
3 TraesCS7B01G134100 chr7D 94.290 1979 63 18 620 2577 199346052 199348001 0.000000e+00 2983.0
4 TraesCS7B01G134100 chr7D 90.419 501 23 3 3039 3519 199348439 199348934 1.380000e-178 636.0
5 TraesCS7B01G134100 chr7D 91.781 365 9 6 2691 3036 199347999 199348361 4.080000e-134 488.0
6 TraesCS7B01G134100 chr7D 89.041 292 29 1 65 356 199345690 199345978 3.340000e-95 359.0
7 TraesCS7B01G134100 chr7D 93.478 92 6 0 3428 3519 201885455 201885546 1.700000e-28 137.0
8 TraesCS7B01G134100 chr7D 97.619 42 1 0 2321 2362 199348393 199348434 4.870000e-09 73.1
9 TraesCS7B01G134100 chr7A 95.587 1473 47 3 872 2341 209146619 209148076 0.000000e+00 2344.0
10 TraesCS7B01G134100 chr7A 90.092 868 42 8 2691 3519 209148350 209149212 0.000000e+00 1086.0
11 TraesCS7B01G134100 chr7A 96.763 278 8 1 2300 2577 209148076 209148352 2.470000e-126 462.0
12 TraesCS7B01G134100 chr7A 84.270 356 46 4 3 356 209145733 209146080 4.350000e-89 339.0
13 TraesCS7B01G134100 chr5D 94.262 122 6 1 2573 2693 492723292 492723171 6.000000e-43 185.0
14 TraesCS7B01G134100 chr5D 92.857 126 7 2 2569 2693 461071767 461071643 7.760000e-42 182.0
15 TraesCS7B01G134100 chr5D 93.478 92 6 0 3428 3519 150835731 150835640 1.700000e-28 137.0
16 TraesCS7B01G134100 chr3A 93.600 125 7 1 2569 2693 114241413 114241536 6.000000e-43 185.0
17 TraesCS7B01G134100 chr1B 92.969 128 7 2 2568 2694 611680415 611680541 6.000000e-43 185.0
18 TraesCS7B01G134100 chr4A 91.241 137 9 3 2558 2693 589013626 589013492 2.160000e-42 183.0
19 TraesCS7B01G134100 chr2D 93.496 123 8 0 2571 2693 12692235 12692357 2.160000e-42 183.0
20 TraesCS7B01G134100 chr2D 93.617 94 6 0 3426 3519 593512484 593512577 1.320000e-29 141.0
21 TraesCS7B01G134100 chr3B 90.299 134 11 2 2560 2693 830093598 830093729 1.300000e-39 174.0
22 TraesCS7B01G134100 chr3B 90.299 134 11 2 2560 2693 830140883 830141014 1.300000e-39 174.0
23 TraesCS7B01G134100 chr2A 95.556 90 4 0 3430 3519 249754459 249754548 1.020000e-30 145.0
24 TraesCS7B01G134100 chr5A 94.565 92 5 0 3428 3519 653299438 653299529 3.660000e-30 143.0
25 TraesCS7B01G134100 chr6A 94.444 90 5 0 3430 3519 60987303 60987392 4.740000e-29 139.0
26 TraesCS7B01G134100 chr4B 92.222 90 7 0 3430 3519 608977355 608977266 1.030000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G134100 chr7B 163477922 163481440 3518 False 3020.00 5356 100.000 1 3519 2 chr7B.!!$F1 3518
1 TraesCS7B01G134100 chr7D 199345690 199348934 3244 False 907.82 2983 92.630 65 3519 5 chr7D.!!$F2 3454
2 TraesCS7B01G134100 chr7A 209145733 209149212 3479 False 1057.75 2344 91.678 3 3519 4 chr7A.!!$F1 3516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 308 0.249953 TACGTCGGTGGCAATGTGTT 60.250 50.000 0.00 0.0 0.00 3.32 F
365 371 1.000955 GAGGAAGAAGACGAACTGGCA 59.999 52.381 0.00 0.0 0.00 4.92 F
366 372 1.416401 AGGAAGAAGACGAACTGGCAA 59.584 47.619 0.00 0.0 0.00 4.52 F
1803 2056 1.436195 TTCACGTTCTGGCAGTGCAC 61.436 55.000 18.61 9.4 35.97 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1331 1584 0.251787 TGAGGCAGTAGGAGCAGACA 60.252 55.000 0.0 0.0 0.00 3.41 R
1832 2085 0.252239 TCTGCCTCTTGCCCTGTCTA 60.252 55.000 0.0 0.0 40.16 2.59 R
1835 2088 1.073897 GTTCTGCCTCTTGCCCTGT 59.926 57.895 0.0 0.0 40.16 4.00 R
2664 2958 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.0 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.432628 GAGACGCCCTCAACACCG 60.433 66.667 1.05 0.00 41.58 4.94
38 39 1.164041 CGCCCTCAACACCGTCTTTT 61.164 55.000 0.00 0.00 0.00 2.27
41 42 0.310854 CCTCAACACCGTCTTTTGGC 59.689 55.000 0.00 0.00 0.00 4.52
45 46 2.058829 AACACCGTCTTTTGGCAGCG 62.059 55.000 0.00 0.00 0.00 5.18
49 50 1.646540 CGTCTTTTGGCAGCGTTCA 59.353 52.632 0.00 0.00 0.00 3.18
52 53 0.465460 TCTTTTGGCAGCGTTCACCT 60.465 50.000 0.00 0.00 0.00 4.00
53 54 1.202710 TCTTTTGGCAGCGTTCACCTA 60.203 47.619 0.00 0.00 0.00 3.08
54 55 1.812571 CTTTTGGCAGCGTTCACCTAT 59.187 47.619 0.00 0.00 0.00 2.57
55 56 1.164411 TTTGGCAGCGTTCACCTATG 58.836 50.000 0.00 0.00 0.00 2.23
59 60 1.541233 GGCAGCGTTCACCTATGCTAT 60.541 52.381 0.00 0.00 38.29 2.97
60 61 1.528586 GCAGCGTTCACCTATGCTATG 59.471 52.381 0.00 0.00 38.29 2.23
61 62 1.528586 CAGCGTTCACCTATGCTATGC 59.471 52.381 0.00 0.00 38.29 3.14
102 103 2.776913 GCGAGGAGCTAAGCCGACT 61.777 63.158 0.00 0.00 44.04 4.18
171 173 3.058016 ACAACGGATTGCTGAATGACAAG 60.058 43.478 0.00 0.00 39.66 3.16
179 181 1.747355 GCTGAATGACAAGGATGGTGG 59.253 52.381 0.00 0.00 0.00 4.61
180 182 2.881403 GCTGAATGACAAGGATGGTGGT 60.881 50.000 0.00 0.00 0.00 4.16
188 190 2.577563 ACAAGGATGGTGGTGATGATCA 59.422 45.455 0.00 0.00 0.00 2.92
229 231 0.315568 GGCGGTTGTGGCAAATAACA 59.684 50.000 11.14 0.00 0.00 2.41
243 249 4.440103 GCAAATAACATAGACGACGACGAT 59.560 41.667 15.32 4.68 42.66 3.73
244 250 5.607570 GCAAATAACATAGACGACGACGATG 60.608 44.000 15.32 16.01 42.66 3.84
245 251 5.413969 AATAACATAGACGACGACGATGA 57.586 39.130 22.18 6.01 42.66 2.92
246 252 3.752412 AACATAGACGACGACGATGAA 57.248 42.857 22.18 0.00 42.66 2.57
247 253 3.965292 ACATAGACGACGACGATGAAT 57.035 42.857 22.18 3.33 42.66 2.57
248 254 3.618698 ACATAGACGACGACGATGAATG 58.381 45.455 22.18 13.11 42.66 2.67
249 255 3.064958 ACATAGACGACGACGATGAATGT 59.935 43.478 22.18 13.69 42.66 2.71
260 266 4.388773 CGACGATGAATGTTGAAAAGGAGA 59.611 41.667 0.00 0.00 0.00 3.71
295 301 2.356553 GCTTGTACGTCGGTGGCA 60.357 61.111 0.00 0.00 0.00 4.92
302 308 0.249953 TACGTCGGTGGCAATGTGTT 60.250 50.000 0.00 0.00 0.00 3.32
305 311 1.466950 CGTCGGTGGCAATGTGTTTAT 59.533 47.619 0.00 0.00 0.00 1.40
332 338 3.037549 GTGGGAGTCTTCCAGAGATGAT 58.962 50.000 0.00 0.00 45.98 2.45
341 347 5.070981 GTCTTCCAGAGATGATGGGATACAA 59.929 44.000 0.00 0.00 38.44 2.41
356 362 5.187967 TGGGATACAAAGAGAGGAAGAAGAC 59.812 44.000 0.00 0.00 39.74 3.01
359 365 4.939052 ACAAAGAGAGGAAGAAGACGAA 57.061 40.909 0.00 0.00 0.00 3.85
360 366 4.623002 ACAAAGAGAGGAAGAAGACGAAC 58.377 43.478 0.00 0.00 0.00 3.95
361 367 4.342665 ACAAAGAGAGGAAGAAGACGAACT 59.657 41.667 0.00 0.00 0.00 3.01
362 368 4.513198 AAGAGAGGAAGAAGACGAACTG 57.487 45.455 0.00 0.00 0.00 3.16
363 369 2.823154 AGAGAGGAAGAAGACGAACTGG 59.177 50.000 0.00 0.00 0.00 4.00
364 370 1.273886 AGAGGAAGAAGACGAACTGGC 59.726 52.381 0.00 0.00 0.00 4.85
365 371 1.000955 GAGGAAGAAGACGAACTGGCA 59.999 52.381 0.00 0.00 0.00 4.92
366 372 1.416401 AGGAAGAAGACGAACTGGCAA 59.584 47.619 0.00 0.00 0.00 4.52
367 373 1.531578 GGAAGAAGACGAACTGGCAAC 59.468 52.381 0.00 0.00 0.00 4.17
368 374 1.531578 GAAGAAGACGAACTGGCAACC 59.468 52.381 0.00 0.00 0.00 3.77
642 648 5.527951 GGTCAAATCACATGTAGCAACAAA 58.472 37.500 0.00 0.00 39.58 2.83
709 717 3.987868 GAGAATCACTAAGCACACACGAA 59.012 43.478 0.00 0.00 33.17 3.85
713 721 6.649141 AGAATCACTAAGCACACACGAAAATA 59.351 34.615 0.00 0.00 0.00 1.40
821 832 4.976116 CAGAAATCAAACGGACTTGGAAAC 59.024 41.667 0.00 0.00 0.00 2.78
830 841 2.171003 GGACTTGGAAACAGGGATTGG 58.829 52.381 0.00 0.00 42.75 3.16
894 1140 5.747951 TCAAACAAAATGCAAAACATCCC 57.252 34.783 0.00 0.00 38.34 3.85
937 1186 3.487202 CGGAACATCGCACCACCG 61.487 66.667 0.00 0.00 34.77 4.94
954 1203 1.880796 CGGGCAACATACATCGCGA 60.881 57.895 13.09 13.09 37.10 5.87
1453 1706 2.417516 CCGTACTGCCCTGATCCG 59.582 66.667 0.00 0.00 0.00 4.18
1720 1973 2.670148 GCAAGGGTCCCGGTGATCT 61.670 63.158 16.63 0.00 0.00 2.75
1772 2025 1.737236 CTTCATTTGGCGATCAACGGA 59.263 47.619 0.00 0.00 42.83 4.69
1803 2056 1.436195 TTCACGTTCTGGCAGTGCAC 61.436 55.000 18.61 9.40 35.97 4.57
1809 2062 2.963928 TTCTGGCAGTGCACCTGTGG 62.964 60.000 18.61 1.66 43.55 4.17
1832 2085 4.319949 TTGGCAGGGCAGGGCAAT 62.320 61.111 11.59 0.00 44.57 3.56
1835 2088 2.597340 GCAGGGCAGGGCAATAGA 59.403 61.111 0.00 0.00 0.00 1.98
1868 2121 2.099098 GCAGAACGGATTGGTTTATGGG 59.901 50.000 0.00 0.00 0.00 4.00
1878 2131 3.449746 TGGTTTATGGGAGGAAGGTTG 57.550 47.619 0.00 0.00 0.00 3.77
1931 2184 6.795144 ATGATGGATCATCTGGACTATCTC 57.205 41.667 9.00 0.00 43.72 2.75
1975 2228 2.012673 CAACTGGAATGCTAGTCAGGC 58.987 52.381 0.00 0.00 34.42 4.85
1976 2229 1.577736 ACTGGAATGCTAGTCAGGCT 58.422 50.000 0.00 0.00 28.59 4.58
1977 2230 1.912043 ACTGGAATGCTAGTCAGGCTT 59.088 47.619 0.00 0.00 28.59 4.35
1978 2231 2.307098 ACTGGAATGCTAGTCAGGCTTT 59.693 45.455 0.00 0.00 28.59 3.51
1979 2232 3.519510 ACTGGAATGCTAGTCAGGCTTTA 59.480 43.478 0.00 0.00 28.59 1.85
1980 2233 4.125703 CTGGAATGCTAGTCAGGCTTTAG 58.874 47.826 0.00 0.00 0.00 1.85
1981 2234 3.118261 TGGAATGCTAGTCAGGCTTTAGG 60.118 47.826 0.00 0.00 0.00 2.69
1982 2235 3.134804 GGAATGCTAGTCAGGCTTTAGGA 59.865 47.826 0.00 0.00 0.00 2.94
1983 2236 4.202409 GGAATGCTAGTCAGGCTTTAGGAT 60.202 45.833 0.00 0.00 0.00 3.24
1984 2237 4.615588 ATGCTAGTCAGGCTTTAGGATC 57.384 45.455 0.00 0.00 0.00 3.36
1985 2238 3.647636 TGCTAGTCAGGCTTTAGGATCT 58.352 45.455 0.00 0.00 0.00 2.75
1986 2239 3.386078 TGCTAGTCAGGCTTTAGGATCTG 59.614 47.826 0.00 0.00 0.00 2.90
1987 2240 3.639094 GCTAGTCAGGCTTTAGGATCTGA 59.361 47.826 0.00 0.00 34.34 3.27
1988 2241 4.261994 GCTAGTCAGGCTTTAGGATCTGAG 60.262 50.000 0.00 0.00 37.00 3.35
1989 2242 3.037549 AGTCAGGCTTTAGGATCTGAGG 58.962 50.000 0.00 0.00 37.00 3.86
1990 2243 1.765314 TCAGGCTTTAGGATCTGAGGC 59.235 52.381 0.00 0.00 33.07 4.70
2063 2316 3.151022 CGCCCTCAGGAGAGTCCC 61.151 72.222 0.00 0.00 40.40 4.46
2070 2323 1.566703 CTCAGGAGAGTCCCAGAGGTA 59.433 57.143 10.41 0.00 37.19 3.08
2147 2400 4.030913 AGGTGGATCGGTATGAGAAGAAA 58.969 43.478 0.00 0.00 0.00 2.52
2191 2444 3.216800 AGCAGACAGATGTTGAAAGCAA 58.783 40.909 0.00 0.00 0.00 3.91
2226 2479 0.176449 GCCCAATGGAAAGGACATGC 59.824 55.000 0.00 0.00 0.00 4.06
2273 2526 4.576216 AACTCCTATGACATAGACTGCG 57.424 45.455 21.78 6.68 34.77 5.18
2319 2572 9.974750 GAGAATTCTTGCACTATTTGTAACTAC 57.025 33.333 9.87 0.00 0.00 2.73
2367 2661 1.220206 CCTGTGCTGCCCTCTACAG 59.780 63.158 9.40 9.40 40.06 2.74
2386 2680 3.945285 ACAGTGTTGTTTCAGTTGTAGGG 59.055 43.478 0.00 0.00 32.28 3.53
2414 2708 5.812642 CAGCATCTACTACTTTGTTGGTAGG 59.187 44.000 0.00 0.00 40.43 3.18
2424 2718 4.737054 CTTTGTTGGTAGGCAAAGCATAG 58.263 43.478 4.44 0.00 43.02 2.23
2484 2778 1.707632 TGCCGTTGCAAATATGTTGC 58.292 45.000 0.00 12.76 46.66 4.17
2580 2874 9.950496 ATTTGTCCATATCAAGATATGTACTCC 57.050 33.333 22.03 10.07 45.66 3.85
2581 2875 7.482169 TGTCCATATCAAGATATGTACTCCC 57.518 40.000 22.03 8.84 45.66 4.30
2582 2876 7.248976 TGTCCATATCAAGATATGTACTCCCT 58.751 38.462 22.03 0.00 45.66 4.20
2583 2877 7.397476 TGTCCATATCAAGATATGTACTCCCTC 59.603 40.741 22.03 8.80 45.66 4.30
2584 2878 7.617723 GTCCATATCAAGATATGTACTCCCTCT 59.382 40.741 22.03 0.00 45.66 3.69
2585 2879 7.617329 TCCATATCAAGATATGTACTCCCTCTG 59.383 40.741 22.03 8.44 45.66 3.35
2586 2880 7.398618 CCATATCAAGATATGTACTCCCTCTGT 59.601 40.741 22.03 0.00 45.66 3.41
2587 2881 6.909550 ATCAAGATATGTACTCCCTCTGTC 57.090 41.667 0.00 0.00 0.00 3.51
2588 2882 5.141182 TCAAGATATGTACTCCCTCTGTCC 58.859 45.833 0.00 0.00 0.00 4.02
2589 2883 3.757270 AGATATGTACTCCCTCTGTCCG 58.243 50.000 0.00 0.00 0.00 4.79
2590 2884 3.394940 AGATATGTACTCCCTCTGTCCGA 59.605 47.826 0.00 0.00 0.00 4.55
2591 2885 2.526888 ATGTACTCCCTCTGTCCGAA 57.473 50.000 0.00 0.00 0.00 4.30
2592 2886 2.297698 TGTACTCCCTCTGTCCGAAA 57.702 50.000 0.00 0.00 0.00 3.46
2593 2887 2.600790 TGTACTCCCTCTGTCCGAAAA 58.399 47.619 0.00 0.00 0.00 2.29
2594 2888 2.967201 TGTACTCCCTCTGTCCGAAAAA 59.033 45.455 0.00 0.00 0.00 1.94
2615 2909 7.898014 AAAAACTTGTCCCAAGTTTATCTCT 57.102 32.000 26.42 13.71 46.33 3.10
2616 2910 7.511959 AAAACTTGTCCCAAGTTTATCTCTC 57.488 36.000 26.42 0.00 46.33 3.20
2617 2911 5.825593 ACTTGTCCCAAGTTTATCTCTCA 57.174 39.130 3.85 0.00 0.00 3.27
2618 2912 6.187727 ACTTGTCCCAAGTTTATCTCTCAA 57.812 37.500 3.85 0.00 0.00 3.02
2619 2913 6.601332 ACTTGTCCCAAGTTTATCTCTCAAA 58.399 36.000 3.85 0.00 0.00 2.69
2620 2914 7.234355 ACTTGTCCCAAGTTTATCTCTCAAAT 58.766 34.615 3.85 0.00 0.00 2.32
2621 2915 7.175641 ACTTGTCCCAAGTTTATCTCTCAAATG 59.824 37.037 3.85 0.00 0.00 2.32
2622 2916 5.945784 TGTCCCAAGTTTATCTCTCAAATGG 59.054 40.000 0.00 0.00 0.00 3.16
2623 2917 6.180472 GTCCCAAGTTTATCTCTCAAATGGA 58.820 40.000 0.00 0.00 0.00 3.41
2624 2918 6.830838 GTCCCAAGTTTATCTCTCAAATGGAT 59.169 38.462 0.00 0.00 0.00 3.41
2625 2919 6.830324 TCCCAAGTTTATCTCTCAAATGGATG 59.170 38.462 0.00 0.00 0.00 3.51
2626 2920 6.604795 CCCAAGTTTATCTCTCAAATGGATGT 59.395 38.462 0.00 0.00 0.00 3.06
2627 2921 7.775093 CCCAAGTTTATCTCTCAAATGGATGTA 59.225 37.037 0.00 0.00 0.00 2.29
2628 2922 9.347240 CCAAGTTTATCTCTCAAATGGATGTAT 57.653 33.333 0.00 0.00 0.00 2.29
2633 2927 9.935241 TTTATCTCTCAAATGGATGTATCTAGC 57.065 33.333 0.00 0.00 0.00 3.42
2634 2928 6.983906 TCTCTCAAATGGATGTATCTAGCA 57.016 37.500 0.00 0.00 0.00 3.49
2635 2929 6.753180 TCTCTCAAATGGATGTATCTAGCAC 58.247 40.000 0.00 0.00 0.00 4.40
2636 2930 6.552725 TCTCTCAAATGGATGTATCTAGCACT 59.447 38.462 0.00 0.00 0.00 4.40
2637 2931 7.725844 TCTCTCAAATGGATGTATCTAGCACTA 59.274 37.037 0.00 0.00 0.00 2.74
2638 2932 8.250143 TCTCAAATGGATGTATCTAGCACTAA 57.750 34.615 0.00 0.00 0.00 2.24
2639 2933 8.144478 TCTCAAATGGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
2640 2934 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
2641 2935 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
2642 2936 9.113838 CAAATGGATGTATCTAGCACTAACTTT 57.886 33.333 0.00 0.00 0.00 2.66
2643 2937 8.668510 AATGGATGTATCTAGCACTAACTTTG 57.331 34.615 0.00 0.00 0.00 2.77
2644 2938 7.182817 TGGATGTATCTAGCACTAACTTTGT 57.817 36.000 0.00 0.00 0.00 2.83
2645 2939 7.041721 TGGATGTATCTAGCACTAACTTTGTG 58.958 38.462 0.00 0.00 38.36 3.33
2666 2960 2.818432 GCTAGATGCATCCATTTGAGGG 59.182 50.000 23.06 0.00 42.31 4.30
2667 2961 3.497405 GCTAGATGCATCCATTTGAGGGA 60.497 47.826 23.06 0.00 42.31 4.20
2668 2962 2.941480 AGATGCATCCATTTGAGGGAC 58.059 47.619 23.06 0.00 37.23 4.46
2669 2963 2.242965 AGATGCATCCATTTGAGGGACA 59.757 45.455 23.06 0.00 37.23 4.02
2670 2964 2.601240 TGCATCCATTTGAGGGACAA 57.399 45.000 0.00 0.00 37.23 3.18
2671 2965 2.449464 TGCATCCATTTGAGGGACAAG 58.551 47.619 0.00 0.00 39.77 3.16
2672 2966 1.135721 GCATCCATTTGAGGGACAAGC 59.864 52.381 0.00 0.00 39.77 4.01
2673 2967 2.731572 CATCCATTTGAGGGACAAGCT 58.268 47.619 0.00 0.00 39.77 3.74
2674 2968 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
2675 2969 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
2676 2970 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
2677 2971 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
2678 2972 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
2679 2973 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
2680 2974 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
2681 2975 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
2682 2976 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
2683 2977 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
2684 2978 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
2685 2979 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
2686 2980 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
2687 2981 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
2688 2982 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
2689 2983 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
2690 2984 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
2691 2985 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
2692 2986 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
2709 3003 7.354751 AGGGAGTAAGAAAGCTTAGTATCTG 57.645 40.000 0.00 0.00 39.71 2.90
2800 3096 1.756538 TGATGCTCCATCTAACAGCGA 59.243 47.619 6.74 0.00 41.06 4.93
2829 3125 2.991250 GGACATGCCTGTACACTCAAT 58.009 47.619 0.00 0.00 36.13 2.57
2928 3241 6.772716 TGAACCTATTCTTCTTCAGCTGTTTT 59.227 34.615 14.67 0.00 35.69 2.43
2930 3243 6.299141 ACCTATTCTTCTTCAGCTGTTTTGA 58.701 36.000 14.67 5.21 0.00 2.69
2988 3301 7.948278 GTGTAACTGATGAGTAGAGTGTTTT 57.052 36.000 0.00 0.00 0.00 2.43
3005 3318 3.706594 TGTTTTGGTTACTGCATGGGAAA 59.293 39.130 0.00 0.00 0.00 3.13
3071 3459 2.423577 GTCATTTACCTCAGGCGTTGT 58.576 47.619 0.00 0.00 0.00 3.32
3091 3479 5.703978 TGTGGATTTTAGTGTGTTCCATG 57.296 39.130 0.00 0.00 38.64 3.66
3170 3558 3.381590 TCGTATCACAGGAGGAGATTGTG 59.618 47.826 0.00 0.00 42.65 3.33
3251 3659 1.586154 ATCAAAAGGCGCTGGTTCCG 61.586 55.000 7.64 0.00 0.00 4.30
3342 3750 3.815401 TGTTTGAGCTAGGCAAGAAGAAC 59.185 43.478 0.00 0.00 0.00 3.01
3344 3752 2.260822 TGAGCTAGGCAAGAAGAACCT 58.739 47.619 0.00 0.00 37.61 3.50
3352 3760 7.730784 AGCTAGGCAAGAAGAACCTATCTATTA 59.269 37.037 0.00 0.00 37.42 0.98
3406 3814 6.499350 GGTCTGTATAATCCCCTGTAACCATA 59.501 42.308 0.00 0.00 0.00 2.74
3435 3843 2.789409 ACCTTCAGCATTGTACTCCC 57.211 50.000 0.00 0.00 0.00 4.30
3443 3851 2.039879 AGCATTGTACTCCCTCCGTTTT 59.960 45.455 0.00 0.00 0.00 2.43
3455 3863 7.344134 ACTCCCTCCGTTTTTAAATATAAGCT 58.656 34.615 0.00 0.00 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.084370 GTCTCCTCATTCGGGTTGCG 61.084 60.000 0.00 0.00 0.00 4.85
1 2 1.084370 CGTCTCCTCATTCGGGTTGC 61.084 60.000 0.00 0.00 0.00 4.17
32 33 0.317854 GGTGAACGCTGCCAAAAGAC 60.318 55.000 0.00 0.00 0.00 3.01
38 39 1.745115 GCATAGGTGAACGCTGCCA 60.745 57.895 0.00 0.00 0.00 4.92
41 42 1.528586 GCATAGCATAGGTGAACGCTG 59.471 52.381 0.00 0.00 35.93 5.18
45 46 2.564771 TGCAGCATAGCATAGGTGAAC 58.435 47.619 0.00 0.00 40.11 3.18
49 50 2.882761 CACATTGCAGCATAGCATAGGT 59.117 45.455 0.00 0.00 45.19 3.08
53 54 3.959478 GCACATTGCAGCATAGCAT 57.041 47.368 0.00 0.00 45.19 3.79
102 103 1.667151 GCCAGCTTCAATGTTGCCA 59.333 52.632 0.00 0.00 0.00 4.92
106 107 0.250901 ACCTCGCCAGCTTCAATGTT 60.251 50.000 0.00 0.00 0.00 2.71
111 112 4.020617 CCCACCTCGCCAGCTTCA 62.021 66.667 0.00 0.00 0.00 3.02
152 154 2.086869 CCTTGTCATTCAGCAATCCGT 58.913 47.619 0.00 0.00 0.00 4.69
165 167 1.984424 TCATCACCACCATCCTTGTCA 59.016 47.619 0.00 0.00 0.00 3.58
171 173 3.209410 GAGTTGATCATCACCACCATCC 58.791 50.000 6.55 0.00 0.00 3.51
179 181 2.166459 TGTCCTCCGAGTTGATCATCAC 59.834 50.000 6.55 0.00 0.00 3.06
180 182 2.456577 TGTCCTCCGAGTTGATCATCA 58.543 47.619 6.55 0.00 0.00 3.07
188 190 3.367646 TGAGTAGATGTCCTCCGAGTT 57.632 47.619 0.00 0.00 0.00 3.01
229 231 3.965292 ACATTCATCGTCGTCGTCTAT 57.035 42.857 1.33 0.00 38.33 1.98
243 249 5.301805 GGGTTCTTCTCCTTTTCAACATTCA 59.698 40.000 0.00 0.00 0.00 2.57
244 250 5.536538 AGGGTTCTTCTCCTTTTCAACATTC 59.463 40.000 0.00 0.00 0.00 2.67
245 251 5.458595 AGGGTTCTTCTCCTTTTCAACATT 58.541 37.500 0.00 0.00 0.00 2.71
246 252 5.066913 AGGGTTCTTCTCCTTTTCAACAT 57.933 39.130 0.00 0.00 0.00 2.71
247 253 4.519906 AGGGTTCTTCTCCTTTTCAACA 57.480 40.909 0.00 0.00 0.00 3.33
281 287 0.946700 CACATTGCCACCGACGTACA 60.947 55.000 0.00 0.00 0.00 2.90
286 292 4.893424 ATATAAACACATTGCCACCGAC 57.107 40.909 0.00 0.00 0.00 4.79
287 293 5.906113 AAATATAAACACATTGCCACCGA 57.094 34.783 0.00 0.00 0.00 4.69
295 301 8.650143 AGACTCCCACAAAATATAAACACATT 57.350 30.769 0.00 0.00 0.00 2.71
302 308 7.182026 TCTCTGGAAGACTCCCACAAAATATAA 59.818 37.037 0.00 0.00 38.67 0.98
305 311 4.844085 TCTCTGGAAGACTCCCACAAAATA 59.156 41.667 0.00 0.00 38.67 1.40
332 338 5.187967 GTCTTCTTCCTCTCTTTGTATCCCA 59.812 44.000 0.00 0.00 0.00 4.37
341 347 3.257127 CCAGTTCGTCTTCTTCCTCTCTT 59.743 47.826 0.00 0.00 0.00 2.85
642 648 4.404098 GGATTGTCGGGCGGTGGT 62.404 66.667 0.00 0.00 0.00 4.16
821 832 4.133078 GAGCTTGTATCTTCCAATCCCTG 58.867 47.826 0.00 0.00 0.00 4.45
830 841 3.533606 TGGCTGAGAGCTTGTATCTTC 57.466 47.619 0.00 0.00 41.99 2.87
894 1140 5.047306 GGAACCCAACTAGATTTTGGAAAGG 60.047 44.000 11.28 0.00 45.69 3.11
937 1186 1.641677 GTCGCGATGTATGTTGCCC 59.358 57.895 14.06 0.00 0.00 5.36
954 1203 1.184970 CGGAATGGGGTTTGCTTGGT 61.185 55.000 0.00 0.00 0.00 3.67
1331 1584 0.251787 TGAGGCAGTAGGAGCAGACA 60.252 55.000 0.00 0.00 0.00 3.41
1453 1706 4.035675 CGAAATTCTCCAAATCTACAGGCC 59.964 45.833 0.00 0.00 0.00 5.19
1720 1973 3.731547 CCTCATCTGGCAGGTCCA 58.268 61.111 15.73 0.00 44.18 4.02
1772 2025 2.233922 AGAACGTGAAATCCTCGGTGAT 59.766 45.455 0.00 0.00 36.21 3.06
1803 2056 1.970114 CTGCCAAGACAGCCACAGG 60.970 63.158 0.00 0.00 0.00 4.00
1809 2062 3.060615 CTGCCCTGCCAAGACAGC 61.061 66.667 0.00 0.00 36.29 4.40
1832 2085 0.252239 TCTGCCTCTTGCCCTGTCTA 60.252 55.000 0.00 0.00 40.16 2.59
1835 2088 1.073897 GTTCTGCCTCTTGCCCTGT 59.926 57.895 0.00 0.00 40.16 4.00
1853 2106 3.214328 CTTCCTCCCATAAACCAATCCG 58.786 50.000 0.00 0.00 0.00 4.18
1868 2121 3.181456 CCAGATCCTCATCAACCTTCCTC 60.181 52.174 0.00 0.00 0.00 3.71
1878 2131 3.054802 ACACAAAGTCCCAGATCCTCATC 60.055 47.826 0.00 0.00 0.00 2.92
1931 2184 1.358402 CATCTCTGCTCCGGTCTCG 59.642 63.158 0.00 0.00 0.00 4.04
1975 2228 5.878406 TCCTAAAGCCTCAGATCCTAAAG 57.122 43.478 0.00 0.00 0.00 1.85
1976 2229 6.042552 CAGATCCTAAAGCCTCAGATCCTAAA 59.957 42.308 0.00 0.00 35.08 1.85
1977 2230 5.541868 CAGATCCTAAAGCCTCAGATCCTAA 59.458 44.000 0.00 0.00 35.08 2.69
1978 2231 5.083122 CAGATCCTAAAGCCTCAGATCCTA 58.917 45.833 0.00 0.00 35.08 2.94
1979 2232 3.903090 CAGATCCTAAAGCCTCAGATCCT 59.097 47.826 0.00 0.00 35.08 3.24
1980 2233 3.900601 TCAGATCCTAAAGCCTCAGATCC 59.099 47.826 0.00 0.00 35.08 3.36
1981 2234 5.337491 GGATCAGATCCTAAAGCCTCAGATC 60.337 48.000 21.00 0.00 46.19 2.75
1982 2235 4.531732 GGATCAGATCCTAAAGCCTCAGAT 59.468 45.833 21.00 0.00 46.19 2.90
1983 2236 3.900601 GGATCAGATCCTAAAGCCTCAGA 59.099 47.826 21.00 0.00 46.19 3.27
1984 2237 4.270245 GGATCAGATCCTAAAGCCTCAG 57.730 50.000 21.00 0.00 46.19 3.35
1988 2241 5.971725 ACTGTGGGATCAGATCCTAAAGCC 61.972 50.000 26.30 12.09 46.28 4.35
1989 2242 3.135530 ACTGTGGGATCAGATCCTAAAGC 59.864 47.826 26.30 12.40 46.28 3.51
2063 2316 5.004448 GGAAGACCTTTCCTTTTACCTCTG 58.996 45.833 0.00 0.00 35.73 3.35
2070 2323 4.720046 GTCTCAGGAAGACCTTTCCTTTT 58.280 43.478 5.73 0.00 46.21 2.27
2147 2400 7.147655 TGCTTACTTGACTTCCTCTTGCTATAT 60.148 37.037 0.00 0.00 0.00 0.86
2191 2444 1.133199 TGGGCAAGGTCTTGTTTCCAT 60.133 47.619 11.71 0.00 42.31 3.41
2226 2479 1.881973 CTCACCACCTTCACCAACATG 59.118 52.381 0.00 0.00 0.00 3.21
2273 2526 1.810755 CCGTACCTCCAAAAAGAAGCC 59.189 52.381 0.00 0.00 0.00 4.35
2367 2661 5.337554 GTTTCCCTACAACTGAAACAACAC 58.662 41.667 8.91 0.00 44.46 3.32
2386 2680 6.204882 ACCAACAAAGTAGTAGATGCTGTTTC 59.795 38.462 0.00 0.00 0.00 2.78
2414 2708 9.696917 ATAGCAAATAAATAACCTATGCTTTGC 57.303 29.630 2.47 8.23 44.51 3.68
2424 2718 9.377312 TGCCTTTTCAATAGCAAATAAATAACC 57.623 29.630 0.00 0.00 30.97 2.85
2481 2775 2.394930 TTTAGCTAGCATCACCGCAA 57.605 45.000 18.83 0.00 0.00 4.85
2484 2778 6.366332 CCTAGTTTATTTAGCTAGCATCACCG 59.634 42.308 18.83 0.00 32.96 4.94
2598 2892 5.945784 CCATTTGAGAGATAAACTTGGGACA 59.054 40.000 0.00 0.00 0.00 4.02
2599 2893 6.180472 TCCATTTGAGAGATAAACTTGGGAC 58.820 40.000 0.00 0.00 0.00 4.46
2600 2894 6.387192 TCCATTTGAGAGATAAACTTGGGA 57.613 37.500 0.00 0.00 0.00 4.37
2601 2895 6.604795 ACATCCATTTGAGAGATAAACTTGGG 59.395 38.462 0.00 0.00 0.00 4.12
2602 2896 7.636150 ACATCCATTTGAGAGATAAACTTGG 57.364 36.000 0.00 0.00 0.00 3.61
2607 2901 9.935241 GCTAGATACATCCATTTGAGAGATAAA 57.065 33.333 0.00 0.00 0.00 1.40
2608 2902 9.093458 TGCTAGATACATCCATTTGAGAGATAA 57.907 33.333 0.00 0.00 0.00 1.75
2609 2903 8.526978 GTGCTAGATACATCCATTTGAGAGATA 58.473 37.037 0.00 0.00 0.00 1.98
2610 2904 7.235193 AGTGCTAGATACATCCATTTGAGAGAT 59.765 37.037 0.00 0.00 0.00 2.75
2611 2905 6.552725 AGTGCTAGATACATCCATTTGAGAGA 59.447 38.462 0.00 0.00 0.00 3.10
2612 2906 6.757237 AGTGCTAGATACATCCATTTGAGAG 58.243 40.000 0.00 0.00 0.00 3.20
2613 2907 6.737720 AGTGCTAGATACATCCATTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
2614 2908 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
2615 2909 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
2616 2910 8.668510 AAGTTAGTGCTAGATACATCCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
2617 2911 9.113838 CAAAGTTAGTGCTAGATACATCCATTT 57.886 33.333 0.00 0.00 0.00 2.32
2618 2912 8.267894 ACAAAGTTAGTGCTAGATACATCCATT 58.732 33.333 0.00 0.00 0.00 3.16
2619 2913 7.712639 CACAAAGTTAGTGCTAGATACATCCAT 59.287 37.037 0.00 0.00 0.00 3.41
2620 2914 7.041721 CACAAAGTTAGTGCTAGATACATCCA 58.958 38.462 0.00 0.00 0.00 3.41
2621 2915 7.470289 CACAAAGTTAGTGCTAGATACATCC 57.530 40.000 0.00 0.00 0.00 3.51
2645 2939 2.818432 CCCTCAAATGGATGCATCTAGC 59.182 50.000 25.28 10.32 45.96 3.42
2646 2940 4.070716 GTCCCTCAAATGGATGCATCTAG 58.929 47.826 25.28 8.89 33.65 2.43
2647 2941 3.459227 TGTCCCTCAAATGGATGCATCTA 59.541 43.478 25.28 20.79 33.65 1.98
2648 2942 2.242965 TGTCCCTCAAATGGATGCATCT 59.757 45.455 25.28 4.53 33.65 2.90
2649 2943 2.658285 TGTCCCTCAAATGGATGCATC 58.342 47.619 18.81 18.81 33.65 3.91
2650 2944 2.832643 TGTCCCTCAAATGGATGCAT 57.167 45.000 0.00 0.00 33.65 3.96
2651 2945 2.449464 CTTGTCCCTCAAATGGATGCA 58.551 47.619 0.00 0.00 35.48 3.96
2652 2946 1.135721 GCTTGTCCCTCAAATGGATGC 59.864 52.381 0.00 0.00 35.48 3.91
2653 2947 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
2654 2948 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
2655 2949 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
2656 2950 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
2657 2951 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
2658 2952 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
2659 2953 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
2660 2954 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
2661 2955 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
2662 2956 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
2663 2957 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
2664 2958 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
2665 2959 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
2666 2960 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
2667 2961 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
2668 2962 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
2669 2963 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2670 2964 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2671 2965 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2672 2966 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2673 2967 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
2674 2968 1.547372 CTTACTCCCTCCGTCCGAAAA 59.453 52.381 0.00 0.00 0.00 2.29
2675 2969 1.180029 CTTACTCCCTCCGTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
2676 2970 0.329261 TCTTACTCCCTCCGTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
2677 2971 0.329261 TTCTTACTCCCTCCGTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
2678 2972 1.134560 CTTTCTTACTCCCTCCGTCCG 59.865 57.143 0.00 0.00 0.00 4.79
2679 2973 1.134759 GCTTTCTTACTCCCTCCGTCC 60.135 57.143 0.00 0.00 0.00 4.79
2680 2974 1.826096 AGCTTTCTTACTCCCTCCGTC 59.174 52.381 0.00 0.00 0.00 4.79
2681 2975 1.939980 AGCTTTCTTACTCCCTCCGT 58.060 50.000 0.00 0.00 0.00 4.69
2682 2976 3.447944 ACTAAGCTTTCTTACTCCCTCCG 59.552 47.826 3.20 0.00 33.85 4.63
2683 2977 6.551975 AGATACTAAGCTTTCTTACTCCCTCC 59.448 42.308 3.20 0.00 33.85 4.30
2684 2978 7.285858 TCAGATACTAAGCTTTCTTACTCCCTC 59.714 40.741 3.20 0.00 33.85 4.30
2685 2979 7.126733 TCAGATACTAAGCTTTCTTACTCCCT 58.873 38.462 3.20 0.00 33.85 4.20
2686 2980 7.349412 TCAGATACTAAGCTTTCTTACTCCC 57.651 40.000 3.20 0.00 33.85 4.30
2687 2981 9.654663 TTTTCAGATACTAAGCTTTCTTACTCC 57.345 33.333 3.20 0.00 33.85 3.85
2709 3003 5.177511 GGGTTTGCTTACTGCTTCATTTTTC 59.822 40.000 0.00 0.00 43.37 2.29
2800 3096 4.225042 TGTACAGGCATGTCCTAACTGATT 59.775 41.667 7.56 0.00 45.52 2.57
2829 3125 2.719376 GCCAGAGACACAAAGGCAA 58.281 52.632 0.00 0.00 44.59 4.52
2928 3241 2.291209 TTCAGATGGGCTTGCTTTCA 57.709 45.000 0.00 0.00 0.00 2.69
2930 3243 3.579586 TCATTTTCAGATGGGCTTGCTTT 59.420 39.130 0.00 0.00 0.00 3.51
2988 3301 2.890311 CACTTTTCCCATGCAGTAACCA 59.110 45.455 0.00 0.00 0.00 3.67
3005 3318 3.264998 ACAACAAAAGCAATGCCACTT 57.735 38.095 0.00 0.00 0.00 3.16
3066 3454 4.035792 TGGAACACACTAAAATCCACAACG 59.964 41.667 0.00 0.00 35.33 4.10
3091 3479 2.273370 TTCGAACTACCGATGCACTC 57.727 50.000 0.00 0.00 38.45 3.51
3170 3558 3.733337 ACTCTCGCACATCCATTTATCC 58.267 45.455 0.00 0.00 0.00 2.59
3221 3629 6.650807 CCAGCGCCTTTTGATCTTAGATTATA 59.349 38.462 2.29 0.00 0.00 0.98
3222 3630 5.471456 CCAGCGCCTTTTGATCTTAGATTAT 59.529 40.000 2.29 0.00 0.00 1.28
3223 3631 4.816385 CCAGCGCCTTTTGATCTTAGATTA 59.184 41.667 2.29 0.00 0.00 1.75
3224 3632 3.629398 CCAGCGCCTTTTGATCTTAGATT 59.371 43.478 2.29 0.00 0.00 2.40
3225 3633 3.209410 CCAGCGCCTTTTGATCTTAGAT 58.791 45.455 2.29 0.00 0.00 1.98
3251 3659 5.790593 TCCTAACACAACATGAACTCCTAC 58.209 41.667 0.00 0.00 0.00 3.18
3352 3760 8.870160 GCTAGATGAGCGAATAATTGAGATAT 57.130 34.615 0.00 0.00 42.62 1.63
3383 3791 6.499350 GGTATGGTTACAGGGGATTATACAGA 59.501 42.308 0.00 0.00 0.00 3.41
3406 3814 4.471386 ACAATGCTGAAGGTACTAGATGGT 59.529 41.667 0.00 0.00 38.49 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.