Multiple sequence alignment - TraesCS7B01G132700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G132700 chr7B 100.000 3446 0 0 1 3446 161517102 161513657 0.000000e+00 6364
1 TraesCS7B01G132700 chr7B 82.390 159 27 1 2704 2862 745026639 745026482 1.670000e-28 137
2 TraesCS7B01G132700 chr7D 96.198 2025 58 10 567 2577 197176606 197174587 0.000000e+00 3295
3 TraesCS7B01G132700 chr7A 94.434 2048 55 33 594 2582 206590271 206588224 0.000000e+00 3096
4 TraesCS7B01G132700 chr7A 88.455 563 63 2 6 567 206591417 206590856 0.000000e+00 678
5 TraesCS7B01G132700 chr2B 93.287 581 39 0 2866 3446 459266411 459265831 0.000000e+00 857
6 TraesCS7B01G132700 chr2B 82.390 159 27 1 2704 2862 44437574 44437731 1.670000e-28 137
7 TraesCS7B01G132700 chr1A 92.164 587 45 1 2860 3445 104436408 104436994 0.000000e+00 828
8 TraesCS7B01G132700 chr1A 91.566 581 49 0 2866 3446 529662843 529662263 0.000000e+00 802
9 TraesCS7B01G132700 chr1D 90.878 581 44 1 2866 3446 448261102 448260531 0.000000e+00 771
10 TraesCS7B01G132700 chr1D 92.708 96 6 1 464 559 129710164 129710070 1.670000e-28 137
11 TraesCS7B01G132700 chr5A 90.534 581 41 4 2866 3446 705958882 705959448 0.000000e+00 756
12 TraesCS7B01G132700 chr5A 82.390 159 27 1 2704 2862 601979802 601979959 1.670000e-28 137
13 TraesCS7B01G132700 chr5A 90.909 99 9 0 464 562 483514579 483514481 2.160000e-27 134
14 TraesCS7B01G132700 chr2D 91.171 555 44 3 2894 3446 125516364 125515813 0.000000e+00 749
15 TraesCS7B01G132700 chr2D 92.708 96 5 1 464 559 595784951 595785044 1.670000e-28 137
16 TraesCS7B01G132700 chr3A 86.772 189 23 2 2674 2861 164276985 164276798 3.480000e-50 209
17 TraesCS7B01G132700 chr4D 89.441 161 17 0 2701 2861 185792795 185792635 1.620000e-48 204
18 TraesCS7B01G132700 chr4D 93.750 96 5 1 464 559 309059882 309059976 3.580000e-30 143
19 TraesCS7B01G132700 chr4D 92.708 96 6 1 464 559 217581573 217581479 1.670000e-28 137
20 TraesCS7B01G132700 chr6B 82.390 159 27 1 2704 2862 12862671 12862514 1.670000e-28 137
21 TraesCS7B01G132700 chr6B 82.390 159 27 1 2704 2862 96658839 96658996 1.670000e-28 137
22 TraesCS7B01G132700 chr6B 92.708 96 6 1 464 559 460783958 460783864 1.670000e-28 137
23 TraesCS7B01G132700 chr4A 82.390 159 27 1 2704 2862 450252084 450252241 1.670000e-28 137
24 TraesCS7B01G132700 chr4A 82.390 159 27 1 2704 2862 497639895 497639738 1.670000e-28 137
25 TraesCS7B01G132700 chr3D 92.708 96 6 1 464 559 357288388 357288482 1.670000e-28 137
26 TraesCS7B01G132700 chr1B 91.000 100 7 2 464 562 624125711 624125613 2.160000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G132700 chr7B 161513657 161517102 3445 True 6364 6364 100.0000 1 3446 1 chr7B.!!$R1 3445
1 TraesCS7B01G132700 chr7D 197174587 197176606 2019 True 3295 3295 96.1980 567 2577 1 chr7D.!!$R1 2010
2 TraesCS7B01G132700 chr7A 206588224 206591417 3193 True 1887 3096 91.4445 6 2582 2 chr7A.!!$R1 2576
3 TraesCS7B01G132700 chr2B 459265831 459266411 580 True 857 857 93.2870 2866 3446 1 chr2B.!!$R1 580
4 TraesCS7B01G132700 chr1A 104436408 104436994 586 False 828 828 92.1640 2860 3445 1 chr1A.!!$F1 585
5 TraesCS7B01G132700 chr1A 529662263 529662843 580 True 802 802 91.5660 2866 3446 1 chr1A.!!$R1 580
6 TraesCS7B01G132700 chr1D 448260531 448261102 571 True 771 771 90.8780 2866 3446 1 chr1D.!!$R2 580
7 TraesCS7B01G132700 chr5A 705958882 705959448 566 False 756 756 90.5340 2866 3446 1 chr5A.!!$F2 580
8 TraesCS7B01G132700 chr2D 125515813 125516364 551 True 749 749 91.1710 2894 3446 1 chr2D.!!$R1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 168 0.256177 GAAGGGAGATTGGGACCCAC 59.744 60.0 14.59 2.18 45.43 4.61 F
918 1490 0.401738 CCAAGAACCAAGAGGGCTCA 59.598 55.0 0.00 0.00 42.05 4.26 F
1536 2120 0.467290 ACGTGACCACCAAAGGCAAT 60.467 50.0 0.00 0.00 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1050 1622 0.393944 CCATCACCAGCTGCATCACT 60.394 55.0 8.66 0.00 0.0 3.41 R
2316 2900 0.037303 TGTAGTCGTCGAGGTCCCTT 59.963 55.0 4.85 0.00 0.0 3.95 R
2742 3364 0.099082 GAGGAGGAAGTCTACACGCG 59.901 60.0 3.53 3.53 0.0 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 2.560542 GTGTTGGAAATGGTGGTGCATA 59.439 45.455 0.00 0.00 0.00 3.14
90 92 3.917760 GCGAGGGACGGCTGCTAT 61.918 66.667 0.00 0.00 42.83 2.97
99 101 0.837272 ACGGCTGCTATAACCATGGT 59.163 50.000 13.00 13.00 0.00 3.55
145 147 3.494626 TGAGAGAGTTGCAAATCGTCAAC 59.505 43.478 23.81 17.15 41.97 3.18
155 157 1.263356 AATCGTCAACGGAAGGGAGA 58.737 50.000 2.31 0.00 40.29 3.71
166 168 0.256177 GAAGGGAGATTGGGACCCAC 59.744 60.000 14.59 2.18 45.43 4.61
187 189 0.759346 GGAGGTCATGCCGTAATCCT 59.241 55.000 0.00 0.00 43.70 3.24
198 200 2.124736 TAATCCTGGCGGCTGTGC 60.125 61.111 11.43 0.00 0.00 4.57
199 201 2.965520 TAATCCTGGCGGCTGTGCA 61.966 57.895 11.43 0.00 36.28 4.57
224 226 1.302832 GGCAGCTAGCTGGTTGTGT 60.303 57.895 38.52 4.88 43.77 3.72
279 281 1.011451 GGACTCGAGCACTGCAAGAC 61.011 60.000 13.61 0.00 37.43 3.01
290 292 4.309950 GCAAGACGGGTGGACGGT 62.310 66.667 0.00 0.00 38.39 4.83
330 332 1.371022 CGCGCGATGCAGTAGAGAT 60.371 57.895 28.94 0.00 46.97 2.75
333 335 1.684142 CGCGATGCAGTAGAGATGAG 58.316 55.000 0.00 0.00 0.00 2.90
334 336 1.665448 CGCGATGCAGTAGAGATGAGG 60.665 57.143 0.00 0.00 0.00 3.86
347 349 2.698274 GAGATGAGGGAGGGAAGAAGAC 59.302 54.545 0.00 0.00 0.00 3.01
356 358 1.486145 GGGAAGAAGACCGGGGTTGA 61.486 60.000 6.32 0.00 0.00 3.18
375 377 5.010617 GGTTGAAAAGGGATGCTTTGACTTA 59.989 40.000 0.00 0.00 0.00 2.24
391 393 7.148639 GCTTTGACTTAATCTAACGATCACACA 60.149 37.037 0.00 0.00 0.00 3.72
393 395 6.683715 TGACTTAATCTAACGATCACACACA 58.316 36.000 0.00 0.00 0.00 3.72
394 396 7.320399 TGACTTAATCTAACGATCACACACAT 58.680 34.615 0.00 0.00 0.00 3.21
411 413 2.815503 CACATGCCAATCTGACAGTTGA 59.184 45.455 15.21 2.32 0.00 3.18
414 416 2.439409 TGCCAATCTGACAGTTGATGG 58.561 47.619 15.21 13.38 0.00 3.51
416 418 2.421424 GCCAATCTGACAGTTGATGGTC 59.579 50.000 15.21 0.00 34.63 4.02
417 419 3.678289 CCAATCTGACAGTTGATGGTCA 58.322 45.455 15.21 0.00 41.44 4.02
458 460 4.221422 GACCGGCGCCTATCAGCA 62.221 66.667 26.68 0.00 34.54 4.41
537 539 9.162764 GACTTTAGTCAAACCTAATATGCAGAA 57.837 33.333 5.04 0.00 44.18 3.02
559 561 8.610035 CAGAATAAATAAAAACGGAGGGAGTAC 58.390 37.037 0.00 0.00 0.00 2.73
563 565 2.109425 AAAACGGAGGGAGTACATGC 57.891 50.000 0.00 0.00 0.00 4.06
592 1152 3.929610 AGCTGAGTTTTATTGACTCTCGC 59.070 43.478 5.92 7.95 43.07 5.03
638 1198 2.152297 ATTGCAAATTGCCCGTGCGA 62.152 50.000 15.98 0.00 44.23 5.10
716 1277 5.924254 CGTCAACACCTGAAATTACACTCTA 59.076 40.000 0.00 0.00 35.22 2.43
786 1347 5.590259 ACATGTTAGCCGATAAAGAAATGCT 59.410 36.000 0.00 0.00 0.00 3.79
853 1414 4.498520 ACTCGCTCGCGACCCATG 62.499 66.667 3.71 3.01 44.01 3.66
887 1459 2.616001 CCAATCCATGGCCAAAAACCAG 60.616 50.000 10.96 0.00 43.80 4.00
918 1490 0.401738 CCAAGAACCAAGAGGGCTCA 59.598 55.000 0.00 0.00 42.05 4.26
998 1570 1.226974 CGACGTCCATTGATCCGCT 60.227 57.895 10.58 0.00 0.00 5.52
1008 1580 1.625417 TTGATCCGCTGATGGAGGCA 61.625 55.000 0.00 0.00 42.45 4.75
1050 1622 1.135527 CGGTTCAGTCGGCTTATGGTA 59.864 52.381 0.00 0.00 0.00 3.25
1349 1927 1.612726 GCAGGAGAACATGACCTTGCT 60.613 52.381 0.00 0.00 31.06 3.91
1530 2114 1.301423 GCAAGTACGTGACCACCAAA 58.699 50.000 13.30 0.00 0.00 3.28
1536 2120 0.467290 ACGTGACCACCAAAGGCAAT 60.467 50.000 0.00 0.00 0.00 3.56
2415 2999 3.434453 CCAAGGACGAGGTCTATCTCTCT 60.434 52.174 0.00 0.00 32.47 3.10
2450 3034 1.524621 CGCCCAGGTCATGATCCAC 60.525 63.158 1.24 0.00 0.00 4.02
2475 3077 2.945668 GACTTTCTTGTGTTCAGCTGGT 59.054 45.455 15.13 0.00 0.00 4.00
2477 3079 2.418368 TTCTTGTGTTCAGCTGGTGT 57.582 45.000 15.13 0.00 0.00 4.16
2478 3080 3.552132 TTCTTGTGTTCAGCTGGTGTA 57.448 42.857 15.13 0.00 0.00 2.90
2480 3082 4.882842 TCTTGTGTTCAGCTGGTGTATA 57.117 40.909 15.13 0.00 0.00 1.47
2481 3083 4.820897 TCTTGTGTTCAGCTGGTGTATAG 58.179 43.478 15.13 5.72 0.00 1.31
2482 3084 4.526650 TCTTGTGTTCAGCTGGTGTATAGA 59.473 41.667 15.13 7.99 0.00 1.98
2483 3085 4.456280 TGTGTTCAGCTGGTGTATAGAG 57.544 45.455 15.13 0.00 0.00 2.43
2486 3088 5.105877 TGTGTTCAGCTGGTGTATAGAGTAC 60.106 44.000 15.13 0.00 0.00 2.73
2488 3090 5.715279 TGTTCAGCTGGTGTATAGAGTACTT 59.285 40.000 15.13 0.00 0.00 2.24
2489 3091 6.210784 TGTTCAGCTGGTGTATAGAGTACTTT 59.789 38.462 15.13 0.00 0.00 2.66
2491 3093 7.241042 TCAGCTGGTGTATAGAGTACTTTTT 57.759 36.000 15.13 0.00 0.00 1.94
2524 3138 1.737838 TGCCCGTGCTGAATTTCTAG 58.262 50.000 0.00 0.00 38.71 2.43
2577 3199 1.915141 AGGCAGCAATGCTACACTTT 58.085 45.000 7.70 0.00 36.40 2.66
2607 3229 4.029472 GGAAGACCCTCGCCAGTA 57.971 61.111 0.00 0.00 0.00 2.74
2608 3230 2.283824 GGAAGACCCTCGCCAGTAA 58.716 57.895 0.00 0.00 0.00 2.24
2609 3231 0.831307 GGAAGACCCTCGCCAGTAAT 59.169 55.000 0.00 0.00 0.00 1.89
2610 3232 1.473434 GGAAGACCCTCGCCAGTAATG 60.473 57.143 0.00 0.00 0.00 1.90
2611 3233 0.107654 AAGACCCTCGCCAGTAATGC 60.108 55.000 0.00 0.00 0.00 3.56
2612 3234 0.978146 AGACCCTCGCCAGTAATGCT 60.978 55.000 0.00 0.00 0.00 3.79
2613 3235 0.750850 GACCCTCGCCAGTAATGCTA 59.249 55.000 0.00 0.00 0.00 3.49
2614 3236 0.464452 ACCCTCGCCAGTAATGCTAC 59.536 55.000 0.00 0.00 0.00 3.58
2615 3237 0.464036 CCCTCGCCAGTAATGCTACA 59.536 55.000 0.00 0.00 0.00 2.74
2616 3238 1.571919 CCTCGCCAGTAATGCTACAC 58.428 55.000 0.00 0.00 0.00 2.90
2617 3239 1.571919 CTCGCCAGTAATGCTACACC 58.428 55.000 0.00 0.00 0.00 4.16
2618 3240 1.137086 CTCGCCAGTAATGCTACACCT 59.863 52.381 0.00 0.00 0.00 4.00
2619 3241 2.361119 CTCGCCAGTAATGCTACACCTA 59.639 50.000 0.00 0.00 0.00 3.08
2620 3242 2.963101 TCGCCAGTAATGCTACACCTAT 59.037 45.455 0.00 0.00 0.00 2.57
2621 3243 3.059884 CGCCAGTAATGCTACACCTATG 58.940 50.000 0.00 0.00 0.00 2.23
2622 3244 3.403038 GCCAGTAATGCTACACCTATGG 58.597 50.000 0.00 0.00 0.00 2.74
2623 3245 3.807209 GCCAGTAATGCTACACCTATGGG 60.807 52.174 0.00 0.00 38.88 4.00
2624 3246 3.403038 CAGTAATGCTACACCTATGGGC 58.597 50.000 0.00 0.00 35.63 5.36
2625 3247 3.045634 AGTAATGCTACACCTATGGGCA 58.954 45.455 0.00 0.00 40.91 5.36
2626 3248 2.645838 AATGCTACACCTATGGGCAG 57.354 50.000 0.00 0.00 40.33 4.85
2627 3249 1.806496 ATGCTACACCTATGGGCAGA 58.194 50.000 0.00 0.00 40.33 4.26
2628 3250 1.578897 TGCTACACCTATGGGCAGAA 58.421 50.000 0.00 0.00 35.00 3.02
2629 3251 1.912731 TGCTACACCTATGGGCAGAAA 59.087 47.619 0.00 0.00 35.00 2.52
2630 3252 2.509548 TGCTACACCTATGGGCAGAAAT 59.490 45.455 0.00 0.00 35.00 2.17
2631 3253 3.053693 TGCTACACCTATGGGCAGAAATT 60.054 43.478 0.00 0.00 35.00 1.82
2632 3254 3.954258 GCTACACCTATGGGCAGAAATTT 59.046 43.478 0.00 0.00 35.63 1.82
2633 3255 4.202050 GCTACACCTATGGGCAGAAATTTG 60.202 45.833 0.00 0.00 35.63 2.32
2634 3256 4.046286 ACACCTATGGGCAGAAATTTGA 57.954 40.909 0.00 0.00 35.63 2.69
2635 3257 4.019174 ACACCTATGGGCAGAAATTTGAG 58.981 43.478 0.00 0.00 35.63 3.02
2636 3258 4.019174 CACCTATGGGCAGAAATTTGAGT 58.981 43.478 0.00 0.00 35.63 3.41
2637 3259 4.019174 ACCTATGGGCAGAAATTTGAGTG 58.981 43.478 0.00 0.00 35.63 3.51
2638 3260 4.263905 ACCTATGGGCAGAAATTTGAGTGA 60.264 41.667 0.00 0.00 35.63 3.41
2639 3261 4.706476 CCTATGGGCAGAAATTTGAGTGAA 59.294 41.667 0.00 0.00 0.00 3.18
2640 3262 4.796038 ATGGGCAGAAATTTGAGTGAAG 57.204 40.909 0.00 0.00 0.00 3.02
2641 3263 3.565307 TGGGCAGAAATTTGAGTGAAGT 58.435 40.909 0.00 0.00 0.00 3.01
2642 3264 3.318839 TGGGCAGAAATTTGAGTGAAGTG 59.681 43.478 0.00 0.00 0.00 3.16
2643 3265 3.569701 GGGCAGAAATTTGAGTGAAGTGA 59.430 43.478 0.00 0.00 0.00 3.41
2644 3266 4.219288 GGGCAGAAATTTGAGTGAAGTGAT 59.781 41.667 0.00 0.00 0.00 3.06
2645 3267 5.159209 GGCAGAAATTTGAGTGAAGTGATG 58.841 41.667 0.00 0.00 0.00 3.07
2646 3268 5.048504 GGCAGAAATTTGAGTGAAGTGATGA 60.049 40.000 0.00 0.00 0.00 2.92
2647 3269 6.441274 GCAGAAATTTGAGTGAAGTGATGAA 58.559 36.000 0.00 0.00 0.00 2.57
2648 3270 6.581542 GCAGAAATTTGAGTGAAGTGATGAAG 59.418 38.462 0.00 0.00 0.00 3.02
2649 3271 7.646314 CAGAAATTTGAGTGAAGTGATGAAGT 58.354 34.615 0.00 0.00 0.00 3.01
2650 3272 7.802251 CAGAAATTTGAGTGAAGTGATGAAGTC 59.198 37.037 0.00 0.00 0.00 3.01
2651 3273 7.718753 AGAAATTTGAGTGAAGTGATGAAGTCT 59.281 33.333 0.00 0.00 0.00 3.24
2652 3274 6.798315 ATTTGAGTGAAGTGATGAAGTCTG 57.202 37.500 0.00 0.00 0.00 3.51
2653 3275 5.535753 TTGAGTGAAGTGATGAAGTCTGA 57.464 39.130 0.00 0.00 0.00 3.27
2654 3276 5.535753 TGAGTGAAGTGATGAAGTCTGAA 57.464 39.130 0.00 0.00 0.00 3.02
2655 3277 5.917462 TGAGTGAAGTGATGAAGTCTGAAA 58.083 37.500 0.00 0.00 0.00 2.69
2656 3278 6.528321 TGAGTGAAGTGATGAAGTCTGAAAT 58.472 36.000 0.00 0.00 0.00 2.17
2657 3279 7.670364 TGAGTGAAGTGATGAAGTCTGAAATA 58.330 34.615 0.00 0.00 0.00 1.40
2658 3280 8.150296 TGAGTGAAGTGATGAAGTCTGAAATAA 58.850 33.333 0.00 0.00 0.00 1.40
2659 3281 8.908786 AGTGAAGTGATGAAGTCTGAAATAAA 57.091 30.769 0.00 0.00 0.00 1.40
2660 3282 8.778358 AGTGAAGTGATGAAGTCTGAAATAAAC 58.222 33.333 0.00 0.00 0.00 2.01
2661 3283 8.559536 GTGAAGTGATGAAGTCTGAAATAAACA 58.440 33.333 0.00 0.00 0.00 2.83
2662 3284 9.288576 TGAAGTGATGAAGTCTGAAATAAACAT 57.711 29.630 0.00 0.00 0.00 2.71
2663 3285 9.766277 GAAGTGATGAAGTCTGAAATAAACATC 57.234 33.333 0.00 0.00 35.13 3.06
2664 3286 8.853077 AGTGATGAAGTCTGAAATAAACATCA 57.147 30.769 0.00 0.00 39.87 3.07
2665 3287 9.458727 AGTGATGAAGTCTGAAATAAACATCAT 57.541 29.630 0.00 0.00 42.51 2.45
2666 3288 9.713740 GTGATGAAGTCTGAAATAAACATCATC 57.286 33.333 0.00 11.10 43.35 2.92
2667 3289 9.676861 TGATGAAGTCTGAAATAAACATCATCT 57.323 29.630 16.22 0.00 43.40 2.90
2670 3292 8.950210 TGAAGTCTGAAATAAACATCATCTTCC 58.050 33.333 13.16 0.00 0.00 3.46
2671 3293 9.171877 GAAGTCTGAAATAAACATCATCTTCCT 57.828 33.333 0.00 0.00 0.00 3.36
2673 3295 9.606631 AGTCTGAAATAAACATCATCTTCCTAC 57.393 33.333 0.00 0.00 0.00 3.18
2674 3296 8.831550 GTCTGAAATAAACATCATCTTCCTACC 58.168 37.037 0.00 0.00 0.00 3.18
2675 3297 8.548025 TCTGAAATAAACATCATCTTCCTACCA 58.452 33.333 0.00 0.00 0.00 3.25
2676 3298 9.347240 CTGAAATAAACATCATCTTCCTACCAT 57.653 33.333 0.00 0.00 0.00 3.55
2680 3302 9.658799 AATAAACATCATCTTCCTACCATATCG 57.341 33.333 0.00 0.00 0.00 2.92
2681 3303 6.918067 AACATCATCTTCCTACCATATCGA 57.082 37.500 0.00 0.00 0.00 3.59
2682 3304 7.487822 AACATCATCTTCCTACCATATCGAT 57.512 36.000 2.16 2.16 0.00 3.59
2683 3305 7.106439 ACATCATCTTCCTACCATATCGATC 57.894 40.000 0.00 0.00 0.00 3.69
2684 3306 6.097554 ACATCATCTTCCTACCATATCGATCC 59.902 42.308 0.00 0.00 0.00 3.36
2685 3307 5.832221 TCATCTTCCTACCATATCGATCCT 58.168 41.667 0.00 0.00 0.00 3.24
2686 3308 6.256819 TCATCTTCCTACCATATCGATCCTT 58.743 40.000 0.00 0.00 0.00 3.36
2687 3309 6.726299 TCATCTTCCTACCATATCGATCCTTT 59.274 38.462 0.00 0.00 0.00 3.11
2688 3310 6.591750 TCTTCCTACCATATCGATCCTTTC 57.408 41.667 0.00 0.00 0.00 2.62
2689 3311 6.075315 TCTTCCTACCATATCGATCCTTTCA 58.925 40.000 0.00 0.00 0.00 2.69
2690 3312 5.723672 TCCTACCATATCGATCCTTTCAC 57.276 43.478 0.00 0.00 0.00 3.18
2691 3313 5.144832 TCCTACCATATCGATCCTTTCACA 58.855 41.667 0.00 0.00 0.00 3.58
2692 3314 5.600898 TCCTACCATATCGATCCTTTCACAA 59.399 40.000 0.00 0.00 0.00 3.33
2693 3315 5.928839 CCTACCATATCGATCCTTTCACAAG 59.071 44.000 0.00 0.00 0.00 3.16
2694 3316 5.359194 ACCATATCGATCCTTTCACAAGT 57.641 39.130 0.00 0.00 0.00 3.16
2695 3317 5.118990 ACCATATCGATCCTTTCACAAGTG 58.881 41.667 0.00 0.00 0.00 3.16
2696 3318 5.104941 ACCATATCGATCCTTTCACAAGTGA 60.105 40.000 0.00 0.00 37.91 3.41
2697 3319 5.464722 CCATATCGATCCTTTCACAAGTGAG 59.535 44.000 0.00 0.00 41.13 3.51
2698 3320 3.319137 TCGATCCTTTCACAAGTGAGG 57.681 47.619 2.87 2.88 41.13 3.86
2699 3321 2.632996 TCGATCCTTTCACAAGTGAGGT 59.367 45.455 2.87 0.00 41.13 3.85
2700 3322 3.830178 TCGATCCTTTCACAAGTGAGGTA 59.170 43.478 2.87 0.00 41.13 3.08
2701 3323 4.282449 TCGATCCTTTCACAAGTGAGGTAA 59.718 41.667 2.87 0.00 41.13 2.85
2702 3324 4.627467 CGATCCTTTCACAAGTGAGGTAAG 59.373 45.833 2.87 4.86 41.13 2.34
2703 3325 5.552178 GATCCTTTCACAAGTGAGGTAAGT 58.448 41.667 2.87 0.00 41.13 2.24
2704 3326 4.703897 TCCTTTCACAAGTGAGGTAAGTG 58.296 43.478 2.87 0.00 41.13 3.16
2705 3327 4.407621 TCCTTTCACAAGTGAGGTAAGTGA 59.592 41.667 2.87 0.00 41.13 3.41
2706 3328 5.071788 TCCTTTCACAAGTGAGGTAAGTGAT 59.928 40.000 2.87 0.00 41.13 3.06
2707 3329 5.180117 CCTTTCACAAGTGAGGTAAGTGATG 59.820 44.000 2.87 0.00 41.13 3.07
2708 3330 4.955811 TCACAAGTGAGGTAAGTGATGT 57.044 40.909 0.00 0.00 34.59 3.06
2709 3331 4.631131 TCACAAGTGAGGTAAGTGATGTG 58.369 43.478 0.00 0.00 38.54 3.21
2710 3332 3.748048 CACAAGTGAGGTAAGTGATGTGG 59.252 47.826 0.00 0.00 34.73 4.17
2711 3333 3.646162 ACAAGTGAGGTAAGTGATGTGGA 59.354 43.478 0.00 0.00 0.00 4.02
2712 3334 4.287067 ACAAGTGAGGTAAGTGATGTGGAT 59.713 41.667 0.00 0.00 0.00 3.41
2713 3335 4.478206 AGTGAGGTAAGTGATGTGGATG 57.522 45.455 0.00 0.00 0.00 3.51
2714 3336 4.096681 AGTGAGGTAAGTGATGTGGATGA 58.903 43.478 0.00 0.00 0.00 2.92
2715 3337 4.718774 AGTGAGGTAAGTGATGTGGATGAT 59.281 41.667 0.00 0.00 0.00 2.45
2716 3338 5.053145 GTGAGGTAAGTGATGTGGATGATC 58.947 45.833 0.00 0.00 0.00 2.92
2717 3339 4.716287 TGAGGTAAGTGATGTGGATGATCA 59.284 41.667 0.00 0.00 0.00 2.92
2718 3340 5.163374 TGAGGTAAGTGATGTGGATGATCAG 60.163 44.000 0.09 0.00 30.39 2.90
2719 3341 4.102210 AGGTAAGTGATGTGGATGATCAGG 59.898 45.833 0.09 0.00 30.39 3.86
2720 3342 4.101585 GGTAAGTGATGTGGATGATCAGGA 59.898 45.833 0.09 0.00 30.39 3.86
2721 3343 5.221803 GGTAAGTGATGTGGATGATCAGGAT 60.222 44.000 0.09 0.00 30.39 3.24
2722 3344 4.620589 AGTGATGTGGATGATCAGGATC 57.379 45.455 0.09 2.30 38.29 3.36
2734 3356 4.081406 TGATCAGGATCAACAAAACCTGG 58.919 43.478 9.43 0.00 46.64 4.45
2735 3357 3.593442 TCAGGATCAACAAAACCTGGT 57.407 42.857 0.00 0.00 46.64 4.00
2736 3358 3.221771 TCAGGATCAACAAAACCTGGTG 58.778 45.455 0.00 0.00 46.64 4.17
2737 3359 2.297033 CAGGATCAACAAAACCTGGTGG 59.703 50.000 0.00 0.00 43.58 4.61
2738 3360 1.000843 GGATCAACAAAACCTGGTGGC 59.999 52.381 0.00 0.00 43.58 5.01
2739 3361 1.963515 GATCAACAAAACCTGGTGGCT 59.036 47.619 0.00 0.00 43.58 4.75
2740 3362 1.110442 TCAACAAAACCTGGTGGCTG 58.890 50.000 0.00 0.53 43.58 4.85
2741 3363 0.530431 CAACAAAACCTGGTGGCTGC 60.530 55.000 0.00 0.00 39.28 5.25
2742 3364 1.685355 AACAAAACCTGGTGGCTGCC 61.685 55.000 12.87 12.87 36.63 4.85
2743 3365 2.912025 AAAACCTGGTGGCTGCCG 60.912 61.111 14.98 1.17 36.63 5.69
2751 3373 4.735132 GTGGCTGCCGCGTGTAGA 62.735 66.667 17.46 0.00 36.88 2.59
2752 3374 4.735132 TGGCTGCCGCGTGTAGAC 62.735 66.667 14.98 12.76 34.79 2.59
2753 3375 4.436998 GGCTGCCGCGTGTAGACT 62.437 66.667 14.74 0.00 36.88 3.24
2754 3376 2.432628 GCTGCCGCGTGTAGACTT 60.433 61.111 14.74 0.00 0.00 3.01
2755 3377 2.445438 GCTGCCGCGTGTAGACTTC 61.445 63.158 14.74 0.00 0.00 3.01
2756 3378 1.805945 CTGCCGCGTGTAGACTTCC 60.806 63.158 4.92 0.00 0.00 3.46
2757 3379 2.214181 CTGCCGCGTGTAGACTTCCT 62.214 60.000 4.92 0.00 0.00 3.36
2758 3380 1.516603 GCCGCGTGTAGACTTCCTC 60.517 63.158 4.92 0.00 0.00 3.71
2759 3381 1.139095 CCGCGTGTAGACTTCCTCC 59.861 63.158 4.92 0.00 0.00 4.30
2760 3382 1.313812 CCGCGTGTAGACTTCCTCCT 61.314 60.000 4.92 0.00 0.00 3.69
2761 3383 0.099082 CGCGTGTAGACTTCCTCCTC 59.901 60.000 0.00 0.00 0.00 3.71
2762 3384 1.174783 GCGTGTAGACTTCCTCCTCA 58.825 55.000 0.00 0.00 0.00 3.86
2763 3385 1.544691 GCGTGTAGACTTCCTCCTCAA 59.455 52.381 0.00 0.00 0.00 3.02
2764 3386 2.416162 GCGTGTAGACTTCCTCCTCAAG 60.416 54.545 0.00 0.00 0.00 3.02
2765 3387 2.416162 CGTGTAGACTTCCTCCTCAAGC 60.416 54.545 0.00 0.00 0.00 4.01
2766 3388 2.563179 GTGTAGACTTCCTCCTCAAGCA 59.437 50.000 0.00 0.00 0.00 3.91
2767 3389 2.563179 TGTAGACTTCCTCCTCAAGCAC 59.437 50.000 0.00 0.00 0.00 4.40
2768 3390 1.722034 AGACTTCCTCCTCAAGCACA 58.278 50.000 0.00 0.00 0.00 4.57
2769 3391 1.346068 AGACTTCCTCCTCAAGCACAC 59.654 52.381 0.00 0.00 0.00 3.82
2770 3392 0.398318 ACTTCCTCCTCAAGCACACC 59.602 55.000 0.00 0.00 0.00 4.16
2771 3393 0.397941 CTTCCTCCTCAAGCACACCA 59.602 55.000 0.00 0.00 0.00 4.17
2772 3394 1.004044 CTTCCTCCTCAAGCACACCAT 59.996 52.381 0.00 0.00 0.00 3.55
2773 3395 0.325933 TCCTCCTCAAGCACACCATG 59.674 55.000 0.00 0.00 0.00 3.66
2774 3396 0.325933 CCTCCTCAAGCACACCATGA 59.674 55.000 0.00 0.00 0.00 3.07
2775 3397 1.271543 CCTCCTCAAGCACACCATGAA 60.272 52.381 0.00 0.00 0.00 2.57
2776 3398 2.082231 CTCCTCAAGCACACCATGAAG 58.918 52.381 0.00 0.00 0.00 3.02
2777 3399 1.699083 TCCTCAAGCACACCATGAAGA 59.301 47.619 0.00 0.00 0.00 2.87
2778 3400 2.106338 TCCTCAAGCACACCATGAAGAA 59.894 45.455 0.00 0.00 0.00 2.52
2779 3401 2.886523 CCTCAAGCACACCATGAAGAAA 59.113 45.455 0.00 0.00 0.00 2.52
2780 3402 3.057736 CCTCAAGCACACCATGAAGAAAG 60.058 47.826 0.00 0.00 0.00 2.62
2781 3403 2.886523 TCAAGCACACCATGAAGAAAGG 59.113 45.455 0.00 0.00 0.00 3.11
2782 3404 1.251251 AGCACACCATGAAGAAAGGC 58.749 50.000 0.00 0.00 0.00 4.35
2783 3405 0.961019 GCACACCATGAAGAAAGGCA 59.039 50.000 0.00 0.00 0.00 4.75
2784 3406 1.547372 GCACACCATGAAGAAAGGCAT 59.453 47.619 0.00 0.00 0.00 4.40
2785 3407 2.028748 GCACACCATGAAGAAAGGCATT 60.029 45.455 0.00 0.00 0.00 3.56
2786 3408 3.841643 CACACCATGAAGAAAGGCATTC 58.158 45.455 0.00 0.00 38.39 2.67
2796 3418 4.038271 AGAAAGGCATTCTGAACATCCA 57.962 40.909 3.86 0.00 46.71 3.41
2797 3419 4.410099 AGAAAGGCATTCTGAACATCCAA 58.590 39.130 3.86 0.00 46.71 3.53
2798 3420 4.219288 AGAAAGGCATTCTGAACATCCAAC 59.781 41.667 3.86 0.00 46.71 3.77
2799 3421 3.446442 AGGCATTCTGAACATCCAACT 57.554 42.857 0.00 0.00 0.00 3.16
2800 3422 3.087031 AGGCATTCTGAACATCCAACTG 58.913 45.455 0.00 0.00 0.00 3.16
2801 3423 3.084039 GGCATTCTGAACATCCAACTGA 58.916 45.455 0.00 0.00 0.00 3.41
2802 3424 3.698040 GGCATTCTGAACATCCAACTGAT 59.302 43.478 0.00 0.00 0.00 2.90
2820 3442 2.948386 TGGAGAGACCAGTGACGAG 58.052 57.895 0.00 0.00 44.64 4.18
2821 3443 0.110678 TGGAGAGACCAGTGACGAGT 59.889 55.000 0.00 0.00 44.64 4.18
2822 3444 1.350019 TGGAGAGACCAGTGACGAGTA 59.650 52.381 0.00 0.00 44.64 2.59
2823 3445 2.224695 TGGAGAGACCAGTGACGAGTAA 60.225 50.000 0.00 0.00 44.64 2.24
2824 3446 2.162008 GGAGAGACCAGTGACGAGTAAC 59.838 54.545 0.00 0.00 38.79 2.50
2825 3447 3.075884 GAGAGACCAGTGACGAGTAACT 58.924 50.000 0.00 0.00 0.00 2.24
2826 3448 2.814919 AGAGACCAGTGACGAGTAACTG 59.185 50.000 12.68 12.68 40.92 3.16
2827 3449 1.269998 AGACCAGTGACGAGTAACTGC 59.730 52.381 13.92 3.40 40.10 4.40
2828 3450 0.317479 ACCAGTGACGAGTAACTGCC 59.683 55.000 13.92 0.00 40.10 4.85
2829 3451 0.317160 CCAGTGACGAGTAACTGCCA 59.683 55.000 13.92 0.00 40.10 4.92
2830 3452 1.270094 CCAGTGACGAGTAACTGCCAA 60.270 52.381 13.92 0.00 40.10 4.52
2831 3453 2.612972 CCAGTGACGAGTAACTGCCAAT 60.613 50.000 13.92 0.00 40.10 3.16
2832 3454 2.413112 CAGTGACGAGTAACTGCCAATG 59.587 50.000 7.72 0.00 35.44 2.82
2833 3455 2.299013 AGTGACGAGTAACTGCCAATGA 59.701 45.455 0.00 0.00 0.00 2.57
2834 3456 3.055819 AGTGACGAGTAACTGCCAATGAT 60.056 43.478 0.00 0.00 0.00 2.45
2835 3457 4.159693 AGTGACGAGTAACTGCCAATGATA 59.840 41.667 0.00 0.00 0.00 2.15
2836 3458 4.868171 GTGACGAGTAACTGCCAATGATAA 59.132 41.667 0.00 0.00 0.00 1.75
2837 3459 5.523916 GTGACGAGTAACTGCCAATGATAAT 59.476 40.000 0.00 0.00 0.00 1.28
2838 3460 6.700081 GTGACGAGTAACTGCCAATGATAATA 59.300 38.462 0.00 0.00 0.00 0.98
2839 3461 6.923508 TGACGAGTAACTGCCAATGATAATAG 59.076 38.462 0.00 0.00 0.00 1.73
2840 3462 5.696724 ACGAGTAACTGCCAATGATAATAGC 59.303 40.000 0.00 0.00 0.00 2.97
2841 3463 5.696270 CGAGTAACTGCCAATGATAATAGCA 59.304 40.000 0.00 0.00 0.00 3.49
2845 3467 4.658713 CTGCCAATGATAATAGCAGTCG 57.341 45.455 6.79 0.00 44.59 4.18
2846 3468 4.309933 CTGCCAATGATAATAGCAGTCGA 58.690 43.478 6.79 0.00 44.59 4.20
2847 3469 4.702831 TGCCAATGATAATAGCAGTCGAA 58.297 39.130 0.00 0.00 0.00 3.71
2848 3470 5.308014 TGCCAATGATAATAGCAGTCGAAT 58.692 37.500 0.00 0.00 0.00 3.34
2849 3471 5.179929 TGCCAATGATAATAGCAGTCGAATG 59.820 40.000 8.83 8.83 0.00 2.67
2850 3472 5.391310 GCCAATGATAATAGCAGTCGAATGG 60.391 44.000 15.48 0.00 0.00 3.16
2851 3473 5.702670 CCAATGATAATAGCAGTCGAATGGT 59.297 40.000 21.84 21.84 34.71 3.55
2852 3474 6.873605 CCAATGATAATAGCAGTCGAATGGTA 59.126 38.462 24.65 24.65 37.54 3.25
2853 3475 7.063898 CCAATGATAATAGCAGTCGAATGGTAG 59.936 40.741 25.99 12.26 36.66 3.18
2854 3476 6.650427 TGATAATAGCAGTCGAATGGTAGT 57.350 37.500 25.99 25.44 36.66 2.73
2855 3477 7.754851 TGATAATAGCAGTCGAATGGTAGTA 57.245 36.000 27.05 27.05 37.88 1.82
2856 3478 7.817641 TGATAATAGCAGTCGAATGGTAGTAG 58.182 38.462 28.01 0.00 37.21 2.57
2857 3479 5.455056 AATAGCAGTCGAATGGTAGTAGG 57.545 43.478 25.99 0.00 36.66 3.18
2858 3480 2.032620 AGCAGTCGAATGGTAGTAGGG 58.967 52.381 16.80 0.00 0.00 3.53
2859 3481 1.755380 GCAGTCGAATGGTAGTAGGGT 59.245 52.381 15.48 0.00 0.00 4.34
2860 3482 2.167900 GCAGTCGAATGGTAGTAGGGTT 59.832 50.000 15.48 0.00 0.00 4.11
2861 3483 3.369157 GCAGTCGAATGGTAGTAGGGTTT 60.369 47.826 15.48 0.00 0.00 3.27
2862 3484 4.828829 CAGTCGAATGGTAGTAGGGTTTT 58.171 43.478 4.63 0.00 0.00 2.43
2863 3485 5.243207 CAGTCGAATGGTAGTAGGGTTTTT 58.757 41.667 4.63 0.00 0.00 1.94
2864 3486 5.350640 CAGTCGAATGGTAGTAGGGTTTTTC 59.649 44.000 4.63 0.00 0.00 2.29
2922 3544 2.044946 GGCGTGCTCCCCAATCTT 60.045 61.111 0.00 0.00 0.00 2.40
2934 3556 3.263170 TCCCCAATCTTGTCAAGAATCGA 59.737 43.478 18.93 7.94 41.63 3.59
2948 3570 0.036388 AATCGACGCCACCACTGAAT 60.036 50.000 0.00 0.00 0.00 2.57
2979 3601 2.675317 GCGAGTGCCAGAGACTAACAAT 60.675 50.000 0.00 0.00 33.98 2.71
2992 3614 7.049799 GAGACTAACAATCTCTTGGCTATCT 57.950 40.000 0.00 0.00 39.67 1.98
3027 3663 4.688021 ACTTGATCATAACCTCGAAGCTC 58.312 43.478 0.00 0.00 0.00 4.09
3029 3665 4.576216 TGATCATAACCTCGAAGCTCTC 57.424 45.455 0.00 0.00 0.00 3.20
3036 3672 4.553330 AACCTCGAAGCTCTCCAAATAA 57.447 40.909 0.00 0.00 0.00 1.40
3085 3721 1.222936 CAGCAGGGGGTCTGTGATC 59.777 63.158 0.00 0.00 45.08 2.92
3100 3736 2.102420 TGTGATCCCGTAGTATGGCTTG 59.898 50.000 2.49 0.00 0.00 4.01
3145 3781 1.957765 GAGAACGTGCTACCCCTCCC 61.958 65.000 0.00 0.00 0.00 4.30
3178 3814 1.389609 GGGACTCCATGGCAATGCTG 61.390 60.000 6.96 0.00 31.93 4.41
3202 3838 7.392418 TGCCATCAATGTTGATTTTTATCCAA 58.608 30.769 5.53 0.00 45.13 3.53
3239 3875 1.075482 CACCCATGACCAGGCAAGT 59.925 57.895 0.00 0.00 0.00 3.16
3307 3944 0.871722 TTTGCTTCATGGACCGAACG 59.128 50.000 0.00 0.00 0.00 3.95
3331 3968 4.142513 GGATCAAACTCTCCTTTGTCATGC 60.143 45.833 0.00 0.00 33.54 4.06
3409 4046 7.002250 TCTGTCAGAATCTGAAAACAGAGAT 57.998 36.000 21.81 0.00 42.46 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.128692 GAAAAATCTGGTCGTCGCTGG 59.871 52.381 0.00 0.00 0.00 4.85
1 2 2.069273 AGAAAAATCTGGTCGTCGCTG 58.931 47.619 0.00 0.00 0.00 5.18
2 3 2.069273 CAGAAAAATCTGGTCGTCGCT 58.931 47.619 0.00 0.00 34.28 4.93
4 5 2.069273 AGCAGAAAAATCTGGTCGTCG 58.931 47.619 4.80 0.00 44.04 5.12
59 61 1.662608 CTCGCTCATCGCCATAGGT 59.337 57.895 0.00 0.00 38.27 3.08
80 82 0.837272 ACCATGGTTATAGCAGCCGT 59.163 50.000 13.00 0.00 0.00 5.68
81 83 1.229428 CACCATGGTTATAGCAGCCG 58.771 55.000 16.84 0.00 0.00 5.52
99 101 1.374125 CCGTTCGAGCACATGACCA 60.374 57.895 0.00 0.00 0.00 4.02
145 147 1.527370 GGTCCCAATCTCCCTTCCG 59.473 63.158 0.00 0.00 0.00 4.30
155 157 1.151587 ACCTCCTGTGGGTCCCAAT 60.152 57.895 13.78 0.00 34.18 3.16
166 168 1.541233 GGATTACGGCATGACCTCCTG 60.541 57.143 0.00 0.00 35.61 3.86
209 211 1.374758 GCGACACAACCAGCTAGCT 60.375 57.895 12.68 12.68 0.00 3.32
212 214 3.143338 TGGCGACACAACCAGCTA 58.857 55.556 0.00 0.00 33.40 3.32
249 251 2.762875 CGAGTCCCCACCCCTACC 60.763 72.222 0.00 0.00 0.00 3.18
257 259 3.695606 GCAGTGCTCGAGTCCCCA 61.696 66.667 15.13 0.00 0.00 4.96
270 272 2.426023 GTCCACCCGTCTTGCAGT 59.574 61.111 0.00 0.00 0.00 4.40
314 316 1.665448 CCTCATCTCTACTGCATCGCG 60.665 57.143 0.00 0.00 0.00 5.87
330 332 0.614979 CGGTCTTCTTCCCTCCCTCA 60.615 60.000 0.00 0.00 0.00 3.86
333 335 2.368011 CCCGGTCTTCTTCCCTCCC 61.368 68.421 0.00 0.00 0.00 4.30
334 336 2.368011 CCCCGGTCTTCTTCCCTCC 61.368 68.421 0.00 0.00 0.00 4.30
347 349 1.604147 GCATCCCTTTTCAACCCCGG 61.604 60.000 0.00 0.00 0.00 5.73
356 358 8.523658 GTTAGATTAAGTCAAAGCATCCCTTTT 58.476 33.333 0.00 0.00 41.75 2.27
375 377 3.623060 GGCATGTGTGTGATCGTTAGATT 59.377 43.478 0.00 0.00 37.19 2.40
391 393 3.144657 TCAACTGTCAGATTGGCATGT 57.855 42.857 6.91 0.00 28.30 3.21
393 395 3.021695 CCATCAACTGTCAGATTGGCAT 58.978 45.455 6.91 0.00 28.30 4.40
394 396 2.224843 ACCATCAACTGTCAGATTGGCA 60.225 45.455 6.91 0.00 0.00 4.92
414 416 0.666374 CCAACTTTGGGTCGGTTGAC 59.334 55.000 0.00 0.00 44.70 3.18
440 442 4.221422 GCTGATAGGCGCCGGTCA 62.221 66.667 27.45 27.45 0.00 4.02
532 534 6.095021 ACTCCCTCCGTTTTTATTTATTCTGC 59.905 38.462 0.00 0.00 0.00 4.26
535 537 8.496707 TGTACTCCCTCCGTTTTTATTTATTC 57.503 34.615 0.00 0.00 0.00 1.75
537 539 7.012989 GCATGTACTCCCTCCGTTTTTATTTAT 59.987 37.037 0.00 0.00 0.00 1.40
546 548 1.623542 GGGCATGTACTCCCTCCGTT 61.624 60.000 10.07 0.00 39.46 4.44
548 550 2.822399 GGGCATGTACTCCCTCCG 59.178 66.667 10.07 0.00 39.46 4.63
559 561 7.229306 TCAATAAAACTCAGCTATTAGGGCATG 59.771 37.037 0.00 0.00 0.00 4.06
563 565 8.207545 AGAGTCAATAAAACTCAGCTATTAGGG 58.792 37.037 6.10 0.00 44.54 3.53
569 571 5.103000 GCGAGAGTCAATAAAACTCAGCTA 58.897 41.667 13.00 0.00 44.54 3.32
592 1152 0.038166 TTTTAGGGGCTGGCTCAGTG 59.962 55.000 3.17 0.00 33.43 3.66
716 1277 0.388649 CTACTGCTGGAACGCGAAGT 60.389 55.000 15.93 6.91 0.00 3.01
786 1347 1.964223 GGCTCGGATCTCCATGTCTAA 59.036 52.381 0.00 0.00 35.14 2.10
853 1414 0.179119 GGATTGGCACTGCTTGATGC 60.179 55.000 0.00 0.00 41.29 3.91
854 1415 1.179152 TGGATTGGCACTGCTTGATG 58.821 50.000 0.00 0.00 0.00 3.07
855 1416 1.754803 CATGGATTGGCACTGCTTGAT 59.245 47.619 6.42 0.00 0.00 2.57
856 1417 1.179152 CATGGATTGGCACTGCTTGA 58.821 50.000 6.42 0.00 0.00 3.02
887 1459 3.486383 TGGTTCTTGGAATTCACTCCAC 58.514 45.455 7.93 0.00 45.37 4.02
918 1490 4.776837 TGCCAATGGTGTGGAAATTATCTT 59.223 37.500 0.00 0.00 41.65 2.40
980 1552 1.226974 AGCGGATCAATGGACGTCG 60.227 57.895 9.92 0.00 0.00 5.12
998 1570 2.048444 GCAGAAGAATGCCTCCATCA 57.952 50.000 0.00 0.00 40.43 3.07
1008 1580 2.821366 CGCGCCAGGCAGAAGAAT 60.821 61.111 13.30 0.00 43.84 2.40
1050 1622 0.393944 CCATCACCAGCTGCATCACT 60.394 55.000 8.66 0.00 0.00 3.41
1101 1673 0.541063 TGGTGTAGAAGCGGTGGAGA 60.541 55.000 0.00 0.00 0.00 3.71
1349 1927 2.747686 GGAACCGCCTGAACTCCA 59.252 61.111 0.00 0.00 0.00 3.86
1732 2316 2.759795 GAACAGCTTGGAGGCCCT 59.240 61.111 0.00 0.00 0.00 5.19
1759 2343 1.815421 GCGACTCGTTGATGGGCAT 60.815 57.895 0.00 0.00 0.00 4.40
2316 2900 0.037303 TGTAGTCGTCGAGGTCCCTT 59.963 55.000 4.85 0.00 0.00 3.95
2415 2999 2.410687 CGGCTTCTCGAGGAGAGCA 61.411 63.158 25.47 0.00 46.44 4.26
2491 3093 3.827625 CACGGGCAATAATCGAACAAAA 58.172 40.909 0.00 0.00 0.00 2.44
2492 3094 2.414824 GCACGGGCAATAATCGAACAAA 60.415 45.455 3.77 0.00 40.72 2.83
2495 3097 1.014352 AGCACGGGCAATAATCGAAC 58.986 50.000 14.57 0.00 44.61 3.95
2498 3109 1.013596 TTCAGCACGGGCAATAATCG 58.986 50.000 14.57 0.00 44.61 3.34
2503 3116 1.549203 AGAAATTCAGCACGGGCAAT 58.451 45.000 14.57 0.00 44.61 3.56
2524 3138 9.888878 CACCATCATGTTAGATTGAATCATAAC 57.111 33.333 8.03 12.40 0.00 1.89
2590 3212 0.831307 ATTACTGGCGAGGGTCTTCC 59.169 55.000 0.00 0.00 0.00 3.46
2591 3213 1.941325 CATTACTGGCGAGGGTCTTC 58.059 55.000 0.00 0.00 0.00 2.87
2592 3214 0.107654 GCATTACTGGCGAGGGTCTT 60.108 55.000 0.00 0.00 0.00 3.01
2593 3215 0.978146 AGCATTACTGGCGAGGGTCT 60.978 55.000 0.00 0.00 36.08 3.85
2594 3216 0.750850 TAGCATTACTGGCGAGGGTC 59.249 55.000 0.00 0.00 36.08 4.46
2595 3217 0.464452 GTAGCATTACTGGCGAGGGT 59.536 55.000 0.00 0.00 36.08 4.34
2596 3218 0.464036 TGTAGCATTACTGGCGAGGG 59.536 55.000 0.00 0.00 36.08 4.30
2597 3219 1.571919 GTGTAGCATTACTGGCGAGG 58.428 55.000 0.00 0.00 36.08 4.63
2598 3220 1.137086 AGGTGTAGCATTACTGGCGAG 59.863 52.381 0.00 0.00 36.08 5.03
2599 3221 1.191535 AGGTGTAGCATTACTGGCGA 58.808 50.000 0.00 0.00 36.08 5.54
2600 3222 2.882927 TAGGTGTAGCATTACTGGCG 57.117 50.000 0.00 0.00 36.08 5.69
2601 3223 3.403038 CCATAGGTGTAGCATTACTGGC 58.597 50.000 0.00 0.00 0.00 4.85
2602 3224 3.807209 GCCCATAGGTGTAGCATTACTGG 60.807 52.174 0.00 0.00 34.57 4.00
2603 3225 3.181455 TGCCCATAGGTGTAGCATTACTG 60.181 47.826 0.00 0.00 34.57 2.74
2604 3226 3.045634 TGCCCATAGGTGTAGCATTACT 58.954 45.455 0.00 0.00 34.57 2.24
2605 3227 3.071023 TCTGCCCATAGGTGTAGCATTAC 59.929 47.826 0.00 0.00 33.77 1.89
2606 3228 3.313791 TCTGCCCATAGGTGTAGCATTA 58.686 45.455 0.00 0.00 33.77 1.90
2607 3229 2.126882 TCTGCCCATAGGTGTAGCATT 58.873 47.619 0.00 0.00 33.77 3.56
2608 3230 1.806496 TCTGCCCATAGGTGTAGCAT 58.194 50.000 0.00 0.00 33.77 3.79
2609 3231 1.578897 TTCTGCCCATAGGTGTAGCA 58.421 50.000 0.00 0.00 34.57 3.49
2610 3232 2.710096 TTTCTGCCCATAGGTGTAGC 57.290 50.000 0.00 0.00 34.57 3.58
2611 3233 5.192927 TCAAATTTCTGCCCATAGGTGTAG 58.807 41.667 0.00 0.00 34.57 2.74
2612 3234 5.186256 TCAAATTTCTGCCCATAGGTGTA 57.814 39.130 0.00 0.00 34.57 2.90
2613 3235 4.019174 CTCAAATTTCTGCCCATAGGTGT 58.981 43.478 0.00 0.00 34.57 4.16
2614 3236 4.019174 ACTCAAATTTCTGCCCATAGGTG 58.981 43.478 0.00 0.00 34.57 4.00
2615 3237 4.019174 CACTCAAATTTCTGCCCATAGGT 58.981 43.478 0.00 0.00 34.57 3.08
2616 3238 4.272489 TCACTCAAATTTCTGCCCATAGG 58.728 43.478 0.00 0.00 0.00 2.57
2617 3239 5.416952 ACTTCACTCAAATTTCTGCCCATAG 59.583 40.000 0.00 0.00 0.00 2.23
2618 3240 5.183713 CACTTCACTCAAATTTCTGCCCATA 59.816 40.000 0.00 0.00 0.00 2.74
2619 3241 4.021719 CACTTCACTCAAATTTCTGCCCAT 60.022 41.667 0.00 0.00 0.00 4.00
2620 3242 3.318839 CACTTCACTCAAATTTCTGCCCA 59.681 43.478 0.00 0.00 0.00 5.36
2621 3243 3.569701 TCACTTCACTCAAATTTCTGCCC 59.430 43.478 0.00 0.00 0.00 5.36
2622 3244 4.836125 TCACTTCACTCAAATTTCTGCC 57.164 40.909 0.00 0.00 0.00 4.85
2623 3245 6.005583 TCATCACTTCACTCAAATTTCTGC 57.994 37.500 0.00 0.00 0.00 4.26
2624 3246 7.646314 ACTTCATCACTTCACTCAAATTTCTG 58.354 34.615 0.00 0.00 0.00 3.02
2625 3247 7.718753 AGACTTCATCACTTCACTCAAATTTCT 59.281 33.333 0.00 0.00 0.00 2.52
2626 3248 7.802251 CAGACTTCATCACTTCACTCAAATTTC 59.198 37.037 0.00 0.00 0.00 2.17
2627 3249 7.500227 TCAGACTTCATCACTTCACTCAAATTT 59.500 33.333 0.00 0.00 0.00 1.82
2628 3250 6.994496 TCAGACTTCATCACTTCACTCAAATT 59.006 34.615 0.00 0.00 0.00 1.82
2629 3251 6.528321 TCAGACTTCATCACTTCACTCAAAT 58.472 36.000 0.00 0.00 0.00 2.32
2630 3252 5.917462 TCAGACTTCATCACTTCACTCAAA 58.083 37.500 0.00 0.00 0.00 2.69
2631 3253 5.535753 TCAGACTTCATCACTTCACTCAA 57.464 39.130 0.00 0.00 0.00 3.02
2632 3254 5.535753 TTCAGACTTCATCACTTCACTCA 57.464 39.130 0.00 0.00 0.00 3.41
2633 3255 8.539770 TTATTTCAGACTTCATCACTTCACTC 57.460 34.615 0.00 0.00 0.00 3.51
2634 3256 8.778358 GTTTATTTCAGACTTCATCACTTCACT 58.222 33.333 0.00 0.00 0.00 3.41
2635 3257 8.559536 TGTTTATTTCAGACTTCATCACTTCAC 58.440 33.333 0.00 0.00 0.00 3.18
2636 3258 8.675705 TGTTTATTTCAGACTTCATCACTTCA 57.324 30.769 0.00 0.00 0.00 3.02
2637 3259 9.766277 GATGTTTATTTCAGACTTCATCACTTC 57.234 33.333 0.00 0.00 33.18 3.01
2638 3260 9.288576 TGATGTTTATTTCAGACTTCATCACTT 57.711 29.630 0.00 0.00 36.56 3.16
2639 3261 8.853077 TGATGTTTATTTCAGACTTCATCACT 57.147 30.769 0.00 0.00 36.56 3.41
2640 3262 9.713740 GATGATGTTTATTTCAGACTTCATCAC 57.286 33.333 18.63 5.20 45.12 3.06
2641 3263 9.676861 AGATGATGTTTATTTCAGACTTCATCA 57.323 29.630 22.40 13.74 46.52 3.07
2644 3266 8.950210 GGAAGATGATGTTTATTTCAGACTTCA 58.050 33.333 16.55 0.00 38.92 3.02
2645 3267 9.171877 AGGAAGATGATGTTTATTTCAGACTTC 57.828 33.333 0.00 0.00 37.85 3.01
2647 3269 9.606631 GTAGGAAGATGATGTTTATTTCAGACT 57.393 33.333 0.00 0.00 0.00 3.24
2648 3270 8.831550 GGTAGGAAGATGATGTTTATTTCAGAC 58.168 37.037 0.00 0.00 0.00 3.51
2649 3271 8.548025 TGGTAGGAAGATGATGTTTATTTCAGA 58.452 33.333 0.00 0.00 0.00 3.27
2650 3272 8.737168 TGGTAGGAAGATGATGTTTATTTCAG 57.263 34.615 0.00 0.00 0.00 3.02
2654 3276 9.658799 CGATATGGTAGGAAGATGATGTTTATT 57.341 33.333 0.00 0.00 0.00 1.40
2655 3277 9.035890 TCGATATGGTAGGAAGATGATGTTTAT 57.964 33.333 0.00 0.00 0.00 1.40
2656 3278 8.417273 TCGATATGGTAGGAAGATGATGTTTA 57.583 34.615 0.00 0.00 0.00 2.01
2657 3279 7.303182 TCGATATGGTAGGAAGATGATGTTT 57.697 36.000 0.00 0.00 0.00 2.83
2658 3280 6.918067 TCGATATGGTAGGAAGATGATGTT 57.082 37.500 0.00 0.00 0.00 2.71
2659 3281 6.097554 GGATCGATATGGTAGGAAGATGATGT 59.902 42.308 0.00 0.00 0.00 3.06
2660 3282 6.323482 AGGATCGATATGGTAGGAAGATGATG 59.677 42.308 0.00 0.00 0.00 3.07
2661 3283 6.439487 AGGATCGATATGGTAGGAAGATGAT 58.561 40.000 0.00 0.00 0.00 2.45
2662 3284 5.832221 AGGATCGATATGGTAGGAAGATGA 58.168 41.667 0.00 0.00 0.00 2.92
2663 3285 6.537453 AAGGATCGATATGGTAGGAAGATG 57.463 41.667 0.00 0.00 0.00 2.90
2664 3286 6.726299 TGAAAGGATCGATATGGTAGGAAGAT 59.274 38.462 0.00 0.00 0.00 2.40
2665 3287 6.015350 GTGAAAGGATCGATATGGTAGGAAGA 60.015 42.308 0.00 0.00 0.00 2.87
2666 3288 6.159988 GTGAAAGGATCGATATGGTAGGAAG 58.840 44.000 0.00 0.00 0.00 3.46
2667 3289 5.600898 TGTGAAAGGATCGATATGGTAGGAA 59.399 40.000 0.00 0.00 0.00 3.36
2668 3290 5.144832 TGTGAAAGGATCGATATGGTAGGA 58.855 41.667 0.00 0.00 0.00 2.94
2669 3291 5.468540 TGTGAAAGGATCGATATGGTAGG 57.531 43.478 0.00 0.00 0.00 3.18
2670 3292 6.422100 CACTTGTGAAAGGATCGATATGGTAG 59.578 42.308 0.00 0.00 0.00 3.18
2671 3293 6.097696 TCACTTGTGAAAGGATCGATATGGTA 59.902 38.462 0.00 0.00 0.00 3.25
2672 3294 5.104941 TCACTTGTGAAAGGATCGATATGGT 60.105 40.000 0.00 0.00 0.00 3.55
2673 3295 5.359756 TCACTTGTGAAAGGATCGATATGG 58.640 41.667 0.00 0.00 0.00 2.74
2674 3296 5.464722 CCTCACTTGTGAAAGGATCGATATG 59.535 44.000 0.00 0.00 0.00 1.78
2675 3297 5.129485 ACCTCACTTGTGAAAGGATCGATAT 59.871 40.000 13.66 0.00 32.99 1.63
2676 3298 4.466370 ACCTCACTTGTGAAAGGATCGATA 59.534 41.667 13.66 0.00 32.99 2.92
2677 3299 3.261897 ACCTCACTTGTGAAAGGATCGAT 59.738 43.478 13.66 0.00 32.99 3.59
2678 3300 2.632996 ACCTCACTTGTGAAAGGATCGA 59.367 45.455 13.66 0.00 32.99 3.59
2679 3301 3.045601 ACCTCACTTGTGAAAGGATCG 57.954 47.619 13.66 0.00 32.99 3.69
2680 3302 5.409826 CACTTACCTCACTTGTGAAAGGATC 59.590 44.000 13.66 0.00 32.99 3.36
2681 3303 5.071788 TCACTTACCTCACTTGTGAAAGGAT 59.928 40.000 13.66 3.93 35.15 3.24
2682 3304 4.407621 TCACTTACCTCACTTGTGAAAGGA 59.592 41.667 13.66 7.78 35.15 3.36
2683 3305 4.703897 TCACTTACCTCACTTGTGAAAGG 58.296 43.478 14.36 11.13 35.15 3.11
2684 3306 5.760253 ACATCACTTACCTCACTTGTGAAAG 59.240 40.000 4.95 8.16 40.37 2.62
2685 3307 5.527214 CACATCACTTACCTCACTTGTGAAA 59.473 40.000 4.95 0.00 40.37 2.69
2686 3308 5.056480 CACATCACTTACCTCACTTGTGAA 58.944 41.667 4.95 0.00 40.37 3.18
2687 3309 4.503123 CCACATCACTTACCTCACTTGTGA 60.503 45.833 3.32 3.32 41.07 3.58
2688 3310 3.748048 CCACATCACTTACCTCACTTGTG 59.252 47.826 0.00 0.00 34.48 3.33
2689 3311 3.646162 TCCACATCACTTACCTCACTTGT 59.354 43.478 0.00 0.00 0.00 3.16
2690 3312 4.271696 TCCACATCACTTACCTCACTTG 57.728 45.455 0.00 0.00 0.00 3.16
2691 3313 4.532126 TCATCCACATCACTTACCTCACTT 59.468 41.667 0.00 0.00 0.00 3.16
2692 3314 4.096681 TCATCCACATCACTTACCTCACT 58.903 43.478 0.00 0.00 0.00 3.41
2693 3315 4.471904 TCATCCACATCACTTACCTCAC 57.528 45.455 0.00 0.00 0.00 3.51
2694 3316 4.716287 TGATCATCCACATCACTTACCTCA 59.284 41.667 0.00 0.00 0.00 3.86
2695 3317 5.282055 TGATCATCCACATCACTTACCTC 57.718 43.478 0.00 0.00 0.00 3.85
2696 3318 4.102210 CCTGATCATCCACATCACTTACCT 59.898 45.833 0.00 0.00 0.00 3.08
2697 3319 4.101585 TCCTGATCATCCACATCACTTACC 59.898 45.833 0.00 0.00 0.00 2.85
2698 3320 5.282055 TCCTGATCATCCACATCACTTAC 57.718 43.478 0.00 0.00 0.00 2.34
2699 3321 5.603813 TGATCCTGATCATCCACATCACTTA 59.396 40.000 5.74 0.00 42.42 2.24
2700 3322 4.411212 TGATCCTGATCATCCACATCACTT 59.589 41.667 5.74 0.00 42.42 3.16
2701 3323 3.971971 TGATCCTGATCATCCACATCACT 59.028 43.478 5.74 0.00 42.42 3.41
2702 3324 4.347360 TGATCCTGATCATCCACATCAC 57.653 45.455 5.74 0.00 42.42 3.06
2703 3325 4.164604 TGTTGATCCTGATCATCCACATCA 59.835 41.667 10.44 0.00 46.12 3.07
2704 3326 4.711399 TGTTGATCCTGATCATCCACATC 58.289 43.478 10.44 0.00 46.12 3.06
2705 3327 4.783560 TGTTGATCCTGATCATCCACAT 57.216 40.909 10.44 0.00 46.12 3.21
2706 3328 4.573021 TTGTTGATCCTGATCATCCACA 57.427 40.909 10.44 9.28 46.12 4.17
2707 3329 5.393461 GGTTTTGTTGATCCTGATCATCCAC 60.393 44.000 10.44 7.00 46.12 4.02
2708 3330 4.706476 GGTTTTGTTGATCCTGATCATCCA 59.294 41.667 10.44 7.97 46.12 3.41
2709 3331 4.952335 AGGTTTTGTTGATCCTGATCATCC 59.048 41.667 10.44 5.72 46.12 3.51
2716 3338 2.297033 CCACCAGGTTTTGTTGATCCTG 59.703 50.000 0.00 0.00 44.74 3.86
2717 3339 2.597455 CCACCAGGTTTTGTTGATCCT 58.403 47.619 0.00 0.00 0.00 3.24
2718 3340 1.000843 GCCACCAGGTTTTGTTGATCC 59.999 52.381 0.00 0.00 37.19 3.36
2719 3341 1.963515 AGCCACCAGGTTTTGTTGATC 59.036 47.619 0.00 0.00 37.19 2.92
2720 3342 1.688197 CAGCCACCAGGTTTTGTTGAT 59.312 47.619 0.00 0.00 37.19 2.57
2721 3343 1.110442 CAGCCACCAGGTTTTGTTGA 58.890 50.000 0.00 0.00 37.19 3.18
2722 3344 0.530431 GCAGCCACCAGGTTTTGTTG 60.530 55.000 0.00 0.00 37.19 3.33
2723 3345 1.685355 GGCAGCCACCAGGTTTTGTT 61.685 55.000 6.55 0.00 37.19 2.83
2724 3346 2.133641 GGCAGCCACCAGGTTTTGT 61.134 57.895 6.55 0.00 37.19 2.83
2725 3347 2.736531 GGCAGCCACCAGGTTTTG 59.263 61.111 6.55 0.00 37.19 2.44
2726 3348 2.912025 CGGCAGCCACCAGGTTTT 60.912 61.111 13.30 0.00 37.19 2.43
2734 3356 4.735132 TCTACACGCGGCAGCCAC 62.735 66.667 13.30 0.00 41.18 5.01
2735 3357 4.735132 GTCTACACGCGGCAGCCA 62.735 66.667 13.30 0.00 41.18 4.75
2736 3358 3.934391 AAGTCTACACGCGGCAGCC 62.934 63.158 12.47 0.00 41.18 4.85
2737 3359 2.432628 AAGTCTACACGCGGCAGC 60.433 61.111 12.47 0.00 40.74 5.25
2738 3360 1.805945 GGAAGTCTACACGCGGCAG 60.806 63.158 12.47 4.08 0.00 4.85
2739 3361 2.209064 GAGGAAGTCTACACGCGGCA 62.209 60.000 12.47 0.00 0.00 5.69
2740 3362 1.516603 GAGGAAGTCTACACGCGGC 60.517 63.158 12.47 0.00 0.00 6.53
2741 3363 1.139095 GGAGGAAGTCTACACGCGG 59.861 63.158 12.47 1.27 0.00 6.46
2742 3364 0.099082 GAGGAGGAAGTCTACACGCG 59.901 60.000 3.53 3.53 0.00 6.01
2743 3365 1.174783 TGAGGAGGAAGTCTACACGC 58.825 55.000 0.00 0.00 0.00 5.34
2744 3366 2.416162 GCTTGAGGAGGAAGTCTACACG 60.416 54.545 0.00 0.00 0.00 4.49
2745 3367 2.563179 TGCTTGAGGAGGAAGTCTACAC 59.437 50.000 0.00 0.00 0.00 2.90
2746 3368 2.563179 GTGCTTGAGGAGGAAGTCTACA 59.437 50.000 0.00 0.00 0.00 2.74
2747 3369 2.563179 TGTGCTTGAGGAGGAAGTCTAC 59.437 50.000 0.00 0.00 0.00 2.59
2748 3370 2.563179 GTGTGCTTGAGGAGGAAGTCTA 59.437 50.000 0.00 0.00 0.00 2.59
2749 3371 1.346068 GTGTGCTTGAGGAGGAAGTCT 59.654 52.381 0.00 0.00 0.00 3.24
2750 3372 1.609320 GGTGTGCTTGAGGAGGAAGTC 60.609 57.143 0.00 0.00 0.00 3.01
2751 3373 0.398318 GGTGTGCTTGAGGAGGAAGT 59.602 55.000 0.00 0.00 0.00 3.01
2752 3374 0.397941 TGGTGTGCTTGAGGAGGAAG 59.602 55.000 0.00 0.00 0.00 3.46
2753 3375 1.067295 ATGGTGTGCTTGAGGAGGAA 58.933 50.000 0.00 0.00 0.00 3.36
2754 3376 0.325933 CATGGTGTGCTTGAGGAGGA 59.674 55.000 0.00 0.00 0.00 3.71
2755 3377 0.325933 TCATGGTGTGCTTGAGGAGG 59.674 55.000 0.00 0.00 0.00 4.30
2756 3378 2.082231 CTTCATGGTGTGCTTGAGGAG 58.918 52.381 0.00 0.00 0.00 3.69
2757 3379 1.699083 TCTTCATGGTGTGCTTGAGGA 59.301 47.619 0.00 0.00 0.00 3.71
2758 3380 2.189594 TCTTCATGGTGTGCTTGAGG 57.810 50.000 0.00 0.00 0.00 3.86
2759 3381 3.057736 CCTTTCTTCATGGTGTGCTTGAG 60.058 47.826 0.00 0.00 0.00 3.02
2760 3382 2.886523 CCTTTCTTCATGGTGTGCTTGA 59.113 45.455 0.00 0.00 0.00 3.02
2761 3383 2.608752 GCCTTTCTTCATGGTGTGCTTG 60.609 50.000 0.00 0.00 0.00 4.01
2762 3384 1.615392 GCCTTTCTTCATGGTGTGCTT 59.385 47.619 0.00 0.00 0.00 3.91
2763 3385 1.251251 GCCTTTCTTCATGGTGTGCT 58.749 50.000 0.00 0.00 0.00 4.40
2764 3386 0.961019 TGCCTTTCTTCATGGTGTGC 59.039 50.000 0.00 0.00 0.00 4.57
2765 3387 3.508793 AGAATGCCTTTCTTCATGGTGTG 59.491 43.478 0.00 0.00 42.15 3.82
2766 3388 3.508793 CAGAATGCCTTTCTTCATGGTGT 59.491 43.478 0.00 0.00 42.15 4.16
2767 3389 3.760151 TCAGAATGCCTTTCTTCATGGTG 59.240 43.478 0.00 0.00 42.15 4.17
2768 3390 4.038271 TCAGAATGCCTTTCTTCATGGT 57.962 40.909 0.00 0.00 42.15 3.55
2769 3391 4.219070 TGTTCAGAATGCCTTTCTTCATGG 59.781 41.667 0.00 0.00 42.15 3.66
2770 3392 5.381174 TGTTCAGAATGCCTTTCTTCATG 57.619 39.130 0.00 0.00 42.15 3.07
2771 3393 5.126707 GGATGTTCAGAATGCCTTTCTTCAT 59.873 40.000 0.00 3.46 42.15 2.57
2772 3394 4.460382 GGATGTTCAGAATGCCTTTCTTCA 59.540 41.667 0.00 0.00 42.15 3.02
2773 3395 4.460382 TGGATGTTCAGAATGCCTTTCTTC 59.540 41.667 0.00 0.00 42.15 2.87
2774 3396 4.410099 TGGATGTTCAGAATGCCTTTCTT 58.590 39.130 0.00 0.00 42.15 2.52
2775 3397 4.038271 TGGATGTTCAGAATGCCTTTCT 57.962 40.909 0.00 0.00 45.83 2.52
2776 3398 4.219288 AGTTGGATGTTCAGAATGCCTTTC 59.781 41.667 0.00 0.00 34.76 2.62
2777 3399 4.021719 CAGTTGGATGTTCAGAATGCCTTT 60.022 41.667 0.00 0.00 34.76 3.11
2778 3400 3.508793 CAGTTGGATGTTCAGAATGCCTT 59.491 43.478 0.00 0.00 34.76 4.35
2779 3401 3.087031 CAGTTGGATGTTCAGAATGCCT 58.913 45.455 0.00 0.00 34.76 4.75
2780 3402 3.084039 TCAGTTGGATGTTCAGAATGCC 58.916 45.455 0.00 0.00 34.76 4.40
2781 3403 4.669318 CATCAGTTGGATGTTCAGAATGC 58.331 43.478 0.00 0.00 46.81 3.56
2794 3416 1.905215 ACTGGTCTCTCCATCAGTTGG 59.095 52.381 0.00 0.00 46.12 3.77
2795 3417 2.564504 TCACTGGTCTCTCCATCAGTTG 59.435 50.000 0.00 0.00 46.12 3.16
2796 3418 2.564947 GTCACTGGTCTCTCCATCAGTT 59.435 50.000 0.00 0.00 46.12 3.16
2797 3419 2.175202 GTCACTGGTCTCTCCATCAGT 58.825 52.381 0.00 0.00 46.12 3.41
2798 3420 1.133982 CGTCACTGGTCTCTCCATCAG 59.866 57.143 0.00 0.00 46.12 2.90
2799 3421 1.177401 CGTCACTGGTCTCTCCATCA 58.823 55.000 0.00 0.00 46.12 3.07
2800 3422 1.403679 CTCGTCACTGGTCTCTCCATC 59.596 57.143 0.00 0.00 46.12 3.51
2801 3423 1.272203 ACTCGTCACTGGTCTCTCCAT 60.272 52.381 0.00 0.00 46.12 3.41
2802 3424 0.110678 ACTCGTCACTGGTCTCTCCA 59.889 55.000 0.00 0.00 45.01 3.86
2803 3425 2.110901 TACTCGTCACTGGTCTCTCC 57.889 55.000 0.00 0.00 0.00 3.71
2804 3426 3.075884 AGTTACTCGTCACTGGTCTCTC 58.924 50.000 0.00 0.00 0.00 3.20
2805 3427 2.814919 CAGTTACTCGTCACTGGTCTCT 59.185 50.000 3.97 0.00 37.37 3.10
2806 3428 2.668834 GCAGTTACTCGTCACTGGTCTC 60.669 54.545 11.93 0.00 40.77 3.36
2807 3429 1.269998 GCAGTTACTCGTCACTGGTCT 59.730 52.381 11.93 0.00 40.77 3.85
2808 3430 1.669211 GGCAGTTACTCGTCACTGGTC 60.669 57.143 11.93 0.00 40.77 4.02
2809 3431 0.317479 GGCAGTTACTCGTCACTGGT 59.683 55.000 11.93 0.00 40.77 4.00
2810 3432 0.317160 TGGCAGTTACTCGTCACTGG 59.683 55.000 11.93 0.00 40.77 4.00
2811 3433 2.148916 TTGGCAGTTACTCGTCACTG 57.851 50.000 6.95 6.95 42.94 3.66
2812 3434 2.299013 TCATTGGCAGTTACTCGTCACT 59.701 45.455 0.00 0.00 0.00 3.41
2813 3435 2.683968 TCATTGGCAGTTACTCGTCAC 58.316 47.619 0.00 0.00 0.00 3.67
2814 3436 3.610040 ATCATTGGCAGTTACTCGTCA 57.390 42.857 0.00 0.00 0.00 4.35
2815 3437 6.128795 GCTATTATCATTGGCAGTTACTCGTC 60.129 42.308 0.00 0.00 0.00 4.20
2816 3438 5.696724 GCTATTATCATTGGCAGTTACTCGT 59.303 40.000 0.00 0.00 0.00 4.18
2817 3439 5.696270 TGCTATTATCATTGGCAGTTACTCG 59.304 40.000 0.00 0.00 0.00 4.18
2818 3440 7.126726 CTGCTATTATCATTGGCAGTTACTC 57.873 40.000 0.00 0.00 43.44 2.59
2825 3447 4.335400 TCGACTGCTATTATCATTGGCA 57.665 40.909 0.00 0.00 0.00 4.92
2826 3448 5.391310 CCATTCGACTGCTATTATCATTGGC 60.391 44.000 0.00 0.00 0.00 4.52
2827 3449 5.702670 ACCATTCGACTGCTATTATCATTGG 59.297 40.000 0.00 0.00 0.00 3.16
2828 3450 6.791887 ACCATTCGACTGCTATTATCATTG 57.208 37.500 0.00 0.00 0.00 2.82
2829 3451 7.671302 ACTACCATTCGACTGCTATTATCATT 58.329 34.615 0.00 0.00 0.00 2.57
2830 3452 7.233389 ACTACCATTCGACTGCTATTATCAT 57.767 36.000 0.00 0.00 0.00 2.45
2831 3453 6.650427 ACTACCATTCGACTGCTATTATCA 57.350 37.500 0.00 0.00 0.00 2.15
2832 3454 7.251994 CCTACTACCATTCGACTGCTATTATC 58.748 42.308 0.00 0.00 0.00 1.75
2833 3455 6.153000 CCCTACTACCATTCGACTGCTATTAT 59.847 42.308 0.00 0.00 0.00 1.28
2834 3456 5.475909 CCCTACTACCATTCGACTGCTATTA 59.524 44.000 0.00 0.00 0.00 0.98
2835 3457 4.281182 CCCTACTACCATTCGACTGCTATT 59.719 45.833 0.00 0.00 0.00 1.73
2836 3458 3.827302 CCCTACTACCATTCGACTGCTAT 59.173 47.826 0.00 0.00 0.00 2.97
2837 3459 3.220110 CCCTACTACCATTCGACTGCTA 58.780 50.000 0.00 0.00 0.00 3.49
2838 3460 2.032620 CCCTACTACCATTCGACTGCT 58.967 52.381 0.00 0.00 0.00 4.24
2839 3461 1.755380 ACCCTACTACCATTCGACTGC 59.245 52.381 0.00 0.00 0.00 4.40
2840 3462 4.467198 AAACCCTACTACCATTCGACTG 57.533 45.455 0.00 0.00 0.00 3.51
2841 3463 5.012354 TGAAAAACCCTACTACCATTCGACT 59.988 40.000 0.00 0.00 0.00 4.18
2842 3464 5.240121 TGAAAAACCCTACTACCATTCGAC 58.760 41.667 0.00 0.00 0.00 4.20
2843 3465 5.486735 TGAAAAACCCTACTACCATTCGA 57.513 39.130 0.00 0.00 0.00 3.71
2844 3466 6.113411 AGATGAAAAACCCTACTACCATTCG 58.887 40.000 0.00 0.00 0.00 3.34
2845 3467 7.110155 TGAGATGAAAAACCCTACTACCATTC 58.890 38.462 0.00 0.00 0.00 2.67
2846 3468 7.027874 TGAGATGAAAAACCCTACTACCATT 57.972 36.000 0.00 0.00 0.00 3.16
2847 3469 6.636454 TGAGATGAAAAACCCTACTACCAT 57.364 37.500 0.00 0.00 0.00 3.55
2848 3470 6.183361 TGTTGAGATGAAAAACCCTACTACCA 60.183 38.462 0.00 0.00 0.00 3.25
2849 3471 6.148976 GTGTTGAGATGAAAAACCCTACTACC 59.851 42.308 0.00 0.00 0.00 3.18
2850 3472 6.708949 TGTGTTGAGATGAAAAACCCTACTAC 59.291 38.462 0.00 0.00 0.00 2.73
2851 3473 6.833041 TGTGTTGAGATGAAAAACCCTACTA 58.167 36.000 0.00 0.00 0.00 1.82
2852 3474 5.690865 TGTGTTGAGATGAAAAACCCTACT 58.309 37.500 0.00 0.00 0.00 2.57
2853 3475 6.016276 ACATGTGTTGAGATGAAAAACCCTAC 60.016 38.462 0.00 0.00 0.00 3.18
2854 3476 6.068010 ACATGTGTTGAGATGAAAAACCCTA 58.932 36.000 0.00 0.00 0.00 3.53
2855 3477 4.895297 ACATGTGTTGAGATGAAAAACCCT 59.105 37.500 0.00 0.00 0.00 4.34
2856 3478 5.200368 ACATGTGTTGAGATGAAAAACCC 57.800 39.130 0.00 0.00 0.00 4.11
2891 3513 4.356289 GAGCACGCCAGTTCTTTTAAAAA 58.644 39.130 1.66 0.00 0.00 1.94
2892 3514 3.243267 GGAGCACGCCAGTTCTTTTAAAA 60.243 43.478 0.00 0.00 0.00 1.52
2922 3544 0.669318 GGTGGCGTCGATTCTTGACA 60.669 55.000 0.00 0.00 36.11 3.58
2934 3556 1.066430 ACGATTATTCAGTGGTGGCGT 60.066 47.619 0.00 0.00 0.00 5.68
2972 3594 6.815089 AGACAGATAGCCAAGAGATTGTTAG 58.185 40.000 0.00 0.00 0.00 2.34
2979 3601 3.388552 TGGAGACAGATAGCCAAGAGA 57.611 47.619 0.00 0.00 35.01 3.10
2992 3614 5.688814 ATGATCAAGTCATCTTGGAGACA 57.311 39.130 0.00 4.74 44.23 3.41
3027 3663 4.556233 TCGAGATGGCGTATTATTTGGAG 58.444 43.478 0.00 0.00 0.00 3.86
3029 3665 4.988540 TCTTCGAGATGGCGTATTATTTGG 59.011 41.667 0.00 0.00 0.00 3.28
3036 3672 0.315568 GGCTCTTCGAGATGGCGTAT 59.684 55.000 0.00 0.00 0.00 3.06
3085 3721 0.814010 GGTGCAAGCCATACTACGGG 60.814 60.000 0.00 0.00 0.00 5.28
3088 3724 1.334869 GCATGGTGCAAGCCATACTAC 59.665 52.381 8.43 0.00 46.71 2.73
3100 3736 0.389426 CTTTCAAGGCAGCATGGTGC 60.389 55.000 35.86 35.86 45.46 5.01
3178 3814 7.201635 GGTTGGATAAAAATCAACATTGATGGC 60.202 37.037 7.86 0.00 46.60 4.40
3239 3875 1.833630 ACCTCAAGATCATGCTCGGAA 59.166 47.619 0.00 0.00 0.00 4.30
3307 3944 4.021102 TGACAAAGGAGAGTTTGATCCC 57.979 45.455 3.44 0.00 39.40 3.85
3331 3968 3.215244 GACTTCACGCAACAACATTACG 58.785 45.455 0.00 0.00 0.00 3.18
3409 4046 6.381498 TGGGTTAAGGATGTCTTATGTGAA 57.619 37.500 0.00 0.00 37.74 3.18
3415 4052 7.093024 CCTCTTACTTGGGTTAAGGATGTCTTA 60.093 40.741 0.00 0.00 40.84 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.