Multiple sequence alignment - TraesCS7B01G132400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G132400 chr7B 100.000 3206 0 0 1 3206 161198758 161195553 0.000000e+00 5921.0
1 TraesCS7B01G132400 chr7B 90.404 198 15 4 1 196 27282285 27282480 1.140000e-64 257.0
2 TraesCS7B01G132400 chr7D 91.767 2490 87 43 196 2609 196908680 196906233 0.000000e+00 3354.0
3 TraesCS7B01G132400 chr7D 92.736 413 15 5 2642 3054 196906234 196905837 1.660000e-162 582.0
4 TraesCS7B01G132400 chr7D 93.038 158 9 2 3049 3206 196905805 196905650 2.490000e-56 230.0
5 TraesCS7B01G132400 chr7A 92.449 2119 81 29 196 2259 206005937 206003843 0.000000e+00 2953.0
6 TraesCS7B01G132400 chr7A 89.602 779 33 16 2297 3054 206003837 206003086 0.000000e+00 946.0
7 TraesCS7B01G132400 chr7A 91.772 158 11 2 3049 3206 206003054 206002899 5.380000e-53 219.0
8 TraesCS7B01G132400 chr2D 88.889 126 12 2 1 126 640405102 640404979 1.540000e-33 154.0
9 TraesCS7B01G132400 chr2D 91.358 81 5 1 121 199 640392283 640392203 3.380000e-20 110.0
10 TraesCS7B01G132400 chr1B 90.476 42 3 1 159 200 98462819 98462859 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G132400 chr7B 161195553 161198758 3205 True 5921.000000 5921 100.000000 1 3206 1 chr7B.!!$R1 3205
1 TraesCS7B01G132400 chr7D 196905650 196908680 3030 True 1388.666667 3354 92.513667 196 3206 3 chr7D.!!$R1 3010
2 TraesCS7B01G132400 chr7A 206002899 206005937 3038 True 1372.666667 2953 91.274333 196 3206 3 chr7A.!!$R1 3010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.038618 CAGCGCCTTAAAACCCAACC 60.039 55.0 2.29 0.0 0.0 3.77 F
567 592 0.102481 CTGATAGGGTTGGTCCGTCG 59.898 60.0 0.00 0.0 37.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1022 1062 0.041833 AAGGGAGACTAGGAGCAGCA 59.958 55.0 0.0 0.0 0.00 4.41 R
2240 2312 0.472471 AGGAGTAGGAGAGCCGAGAG 59.528 60.0 0.0 0.0 39.96 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.354131 TTTTTGTCCAAACAGCGCC 57.646 47.368 2.29 0.00 36.57 6.53
40 41 0.820871 TTTTTGTCCAAACAGCGCCT 59.179 45.000 2.29 0.00 36.57 5.52
41 42 0.820871 TTTTGTCCAAACAGCGCCTT 59.179 45.000 2.29 0.00 36.57 4.35
42 43 1.681538 TTTGTCCAAACAGCGCCTTA 58.318 45.000 2.29 0.00 36.57 2.69
43 44 1.681538 TTGTCCAAACAGCGCCTTAA 58.318 45.000 2.29 0.00 36.57 1.85
44 45 1.681538 TGTCCAAACAGCGCCTTAAA 58.318 45.000 2.29 0.00 0.00 1.52
45 46 2.025155 TGTCCAAACAGCGCCTTAAAA 58.975 42.857 2.29 0.00 0.00 1.52
46 47 2.223618 TGTCCAAACAGCGCCTTAAAAC 60.224 45.455 2.29 0.00 0.00 2.43
47 48 1.338655 TCCAAACAGCGCCTTAAAACC 59.661 47.619 2.29 0.00 0.00 3.27
48 49 1.604438 CCAAACAGCGCCTTAAAACCC 60.604 52.381 2.29 0.00 0.00 4.11
49 50 1.067821 CAAACAGCGCCTTAAAACCCA 59.932 47.619 2.29 0.00 0.00 4.51
50 51 1.404843 AACAGCGCCTTAAAACCCAA 58.595 45.000 2.29 0.00 0.00 4.12
51 52 0.671796 ACAGCGCCTTAAAACCCAAC 59.328 50.000 2.29 0.00 0.00 3.77
52 53 0.038618 CAGCGCCTTAAAACCCAACC 60.039 55.000 2.29 0.00 0.00 3.77
53 54 1.183030 AGCGCCTTAAAACCCAACCC 61.183 55.000 2.29 0.00 0.00 4.11
54 55 1.465200 GCGCCTTAAAACCCAACCCA 61.465 55.000 0.00 0.00 0.00 4.51
55 56 1.041437 CGCCTTAAAACCCAACCCAA 58.959 50.000 0.00 0.00 0.00 4.12
56 57 1.269883 CGCCTTAAAACCCAACCCAAC 60.270 52.381 0.00 0.00 0.00 3.77
57 58 1.763545 GCCTTAAAACCCAACCCAACA 59.236 47.619 0.00 0.00 0.00 3.33
58 59 2.484065 GCCTTAAAACCCAACCCAACAC 60.484 50.000 0.00 0.00 0.00 3.32
59 60 2.766828 CCTTAAAACCCAACCCAACACA 59.233 45.455 0.00 0.00 0.00 3.72
60 61 3.431068 CCTTAAAACCCAACCCAACACAC 60.431 47.826 0.00 0.00 0.00 3.82
61 62 1.645710 AAAACCCAACCCAACACACA 58.354 45.000 0.00 0.00 0.00 3.72
62 63 1.645710 AAACCCAACCCAACACACAA 58.354 45.000 0.00 0.00 0.00 3.33
63 64 0.899019 AACCCAACCCAACACACAAC 59.101 50.000 0.00 0.00 0.00 3.32
64 65 0.251832 ACCCAACCCAACACACAACA 60.252 50.000 0.00 0.00 0.00 3.33
65 66 0.898320 CCCAACCCAACACACAACAA 59.102 50.000 0.00 0.00 0.00 2.83
66 67 1.276421 CCCAACCCAACACACAACAAA 59.724 47.619 0.00 0.00 0.00 2.83
67 68 2.289694 CCCAACCCAACACACAACAAAA 60.290 45.455 0.00 0.00 0.00 2.44
68 69 2.739379 CCAACCCAACACACAACAAAAC 59.261 45.455 0.00 0.00 0.00 2.43
69 70 3.393800 CAACCCAACACACAACAAAACA 58.606 40.909 0.00 0.00 0.00 2.83
70 71 3.753294 ACCCAACACACAACAAAACAA 57.247 38.095 0.00 0.00 0.00 2.83
71 72 3.394719 ACCCAACACACAACAAAACAAC 58.605 40.909 0.00 0.00 0.00 3.32
72 73 3.070302 ACCCAACACACAACAAAACAACT 59.930 39.130 0.00 0.00 0.00 3.16
73 74 3.431572 CCCAACACACAACAAAACAACTG 59.568 43.478 0.00 0.00 0.00 3.16
74 75 4.302455 CCAACACACAACAAAACAACTGA 58.698 39.130 0.00 0.00 0.00 3.41
75 76 4.928615 CCAACACACAACAAAACAACTGAT 59.071 37.500 0.00 0.00 0.00 2.90
76 77 5.062058 CCAACACACAACAAAACAACTGATC 59.938 40.000 0.00 0.00 0.00 2.92
77 78 4.411327 ACACACAACAAAACAACTGATCG 58.589 39.130 0.00 0.00 0.00 3.69
78 79 4.083003 ACACACAACAAAACAACTGATCGT 60.083 37.500 0.00 0.00 0.00 3.73
79 80 5.122554 ACACACAACAAAACAACTGATCGTA 59.877 36.000 0.00 0.00 0.00 3.43
80 81 6.024664 CACACAACAAAACAACTGATCGTAA 58.975 36.000 0.00 0.00 0.00 3.18
81 82 6.690957 CACACAACAAAACAACTGATCGTAAT 59.309 34.615 0.00 0.00 0.00 1.89
82 83 7.853437 CACACAACAAAACAACTGATCGTAATA 59.147 33.333 0.00 0.00 0.00 0.98
83 84 8.399425 ACACAACAAAACAACTGATCGTAATAA 58.601 29.630 0.00 0.00 0.00 1.40
84 85 8.678510 CACAACAAAACAACTGATCGTAATAAC 58.321 33.333 0.00 0.00 0.00 1.89
114 115 8.794335 AAAAAGCTTAACCCACAATAAAACAA 57.206 26.923 0.00 0.00 0.00 2.83
115 116 7.780008 AAAGCTTAACCCACAATAAAACAAC 57.220 32.000 0.00 0.00 0.00 3.32
116 117 6.724893 AGCTTAACCCACAATAAAACAACT 57.275 33.333 0.00 0.00 0.00 3.16
117 118 6.512297 AGCTTAACCCACAATAAAACAACTG 58.488 36.000 0.00 0.00 0.00 3.16
118 119 6.322712 AGCTTAACCCACAATAAAACAACTGA 59.677 34.615 0.00 0.00 0.00 3.41
119 120 6.419710 GCTTAACCCACAATAAAACAACTGAC 59.580 38.462 0.00 0.00 0.00 3.51
120 121 7.648039 TTAACCCACAATAAAACAACTGACT 57.352 32.000 0.00 0.00 0.00 3.41
121 122 5.767816 ACCCACAATAAAACAACTGACTC 57.232 39.130 0.00 0.00 0.00 3.36
122 123 5.445964 ACCCACAATAAAACAACTGACTCT 58.554 37.500 0.00 0.00 0.00 3.24
123 124 6.597562 ACCCACAATAAAACAACTGACTCTA 58.402 36.000 0.00 0.00 0.00 2.43
124 125 7.057894 ACCCACAATAAAACAACTGACTCTAA 58.942 34.615 0.00 0.00 0.00 2.10
125 126 7.724061 ACCCACAATAAAACAACTGACTCTAAT 59.276 33.333 0.00 0.00 0.00 1.73
126 127 9.226606 CCCACAATAAAACAACTGACTCTAATA 57.773 33.333 0.00 0.00 0.00 0.98
158 159 9.869757 AAAAATGCTGAACTTACAACTAAAAGT 57.130 25.926 0.00 0.00 37.54 2.66
159 160 8.856490 AAATGCTGAACTTACAACTAAAAGTG 57.144 30.769 0.00 0.00 36.12 3.16
160 161 7.801716 ATGCTGAACTTACAACTAAAAGTGA 57.198 32.000 0.00 0.00 36.12 3.41
161 162 7.618502 TGCTGAACTTACAACTAAAAGTGAA 57.381 32.000 0.00 0.00 36.12 3.18
162 163 8.046294 TGCTGAACTTACAACTAAAAGTGAAA 57.954 30.769 0.00 0.00 36.12 2.69
163 164 8.516234 TGCTGAACTTACAACTAAAAGTGAAAA 58.484 29.630 0.00 0.00 36.12 2.29
164 165 9.349145 GCTGAACTTACAACTAAAAGTGAAAAA 57.651 29.630 0.00 0.00 36.12 1.94
166 167 9.332301 TGAACTTACAACTAAAAGTGAAAAACG 57.668 29.630 0.00 0.00 36.12 3.60
167 168 8.677871 AACTTACAACTAAAAGTGAAAAACGG 57.322 30.769 0.00 0.00 36.12 4.44
168 169 6.748658 ACTTACAACTAAAAGTGAAAAACGGC 59.251 34.615 0.00 0.00 34.70 5.68
169 170 4.099824 ACAACTAAAAGTGAAAAACGGCG 58.900 39.130 4.80 4.80 0.00 6.46
170 171 2.723209 ACTAAAAGTGAAAAACGGCGC 58.277 42.857 6.90 0.00 0.00 6.53
171 172 2.097791 ACTAAAAGTGAAAAACGGCGCA 59.902 40.909 10.83 0.00 0.00 6.09
172 173 1.555477 AAAAGTGAAAAACGGCGCAG 58.445 45.000 10.83 8.25 0.00 5.18
190 191 4.724697 CAAAGCGCGCGTCACCAG 62.725 66.667 32.35 12.87 0.00 4.00
217 218 5.774690 AGTCACATTGAAGGCCTTGATTAAA 59.225 36.000 26.25 9.54 0.00 1.52
530 549 6.656693 ACCTATTGGCAGTTATTATGCTGATC 59.343 38.462 0.00 0.00 43.35 2.92
551 570 1.895798 GGGCCGATATGATGACTCTGA 59.104 52.381 0.00 0.00 0.00 3.27
555 574 4.202101 GGCCGATATGATGACTCTGATAGG 60.202 50.000 0.00 0.00 0.00 2.57
560 579 4.970860 ATGATGACTCTGATAGGGTTGG 57.029 45.455 0.00 0.00 0.00 3.77
565 590 1.273098 ACTCTGATAGGGTTGGTCCGT 60.273 52.381 0.00 0.00 37.00 4.69
566 591 1.409427 CTCTGATAGGGTTGGTCCGTC 59.591 57.143 0.00 0.00 37.00 4.79
567 592 0.102481 CTGATAGGGTTGGTCCGTCG 59.898 60.000 0.00 0.00 37.00 5.12
568 593 1.227176 GATAGGGTTGGTCCGTCGC 60.227 63.158 0.00 0.00 37.00 5.19
569 594 1.952102 GATAGGGTTGGTCCGTCGCA 61.952 60.000 0.00 0.00 37.00 5.10
570 595 1.956629 ATAGGGTTGGTCCGTCGCAG 61.957 60.000 0.00 0.00 37.00 5.18
582 607 3.288484 TCGCAGGCGAGAACTGAT 58.712 55.556 12.94 0.00 44.01 2.90
640 665 3.639538 TGTGTTTTGACGTAGAGCTCTC 58.360 45.455 22.17 11.13 0.00 3.20
652 679 3.895232 AGAGCTCTCGAATGCCTAAAA 57.105 42.857 11.45 0.00 34.09 1.52
653 680 4.207891 AGAGCTCTCGAATGCCTAAAAA 57.792 40.909 11.45 0.00 34.09 1.94
654 681 3.935828 AGAGCTCTCGAATGCCTAAAAAC 59.064 43.478 11.45 0.00 34.09 2.43
655 682 3.935828 GAGCTCTCGAATGCCTAAAAACT 59.064 43.478 6.43 0.00 0.00 2.66
656 683 5.086104 AGCTCTCGAATGCCTAAAAACTA 57.914 39.130 5.79 0.00 0.00 2.24
657 684 4.870991 AGCTCTCGAATGCCTAAAAACTAC 59.129 41.667 5.79 0.00 0.00 2.73
658 685 4.870991 GCTCTCGAATGCCTAAAAACTACT 59.129 41.667 0.00 0.00 0.00 2.57
694 721 3.299503 GGAGTGCATACAATTCCCCATT 58.700 45.455 0.00 0.00 0.00 3.16
705 732 5.635120 ACAATTCCCCATTATTCTAGCCTC 58.365 41.667 0.00 0.00 0.00 4.70
823 859 3.740115 TCTTAGAACAGCCTCCACAAAC 58.260 45.455 0.00 0.00 0.00 2.93
857 893 5.763204 CCGGCTAAAGAATATGAGGCTTAAA 59.237 40.000 0.00 0.00 32.58 1.52
858 894 6.262273 CCGGCTAAAGAATATGAGGCTTAAAA 59.738 38.462 0.00 0.00 32.58 1.52
873 909 3.120511 GCTTAAAAGTTGCTCGACCTCTG 60.121 47.826 0.00 0.00 0.00 3.35
923 959 3.071671 CCCCCTGCTTCCAACAAAT 57.928 52.632 0.00 0.00 0.00 2.32
953 989 1.667154 TTCCGTCGAGCCATCTCCTG 61.667 60.000 0.00 0.00 35.94 3.86
1118 1158 0.838608 ACGGTGGGGTTCTACAACAA 59.161 50.000 0.00 0.00 33.70 2.83
1239 1279 2.735444 CGACTGCTTCATCACGGTATGT 60.735 50.000 0.00 0.00 0.00 2.29
1240 1280 3.488553 CGACTGCTTCATCACGGTATGTA 60.489 47.826 0.00 0.00 0.00 2.29
1241 1281 4.621991 GACTGCTTCATCACGGTATGTAT 58.378 43.478 0.00 0.00 0.00 2.29
1242 1282 4.371786 ACTGCTTCATCACGGTATGTATG 58.628 43.478 0.00 0.00 0.00 2.39
1243 1283 4.141937 ACTGCTTCATCACGGTATGTATGT 60.142 41.667 0.00 0.00 0.00 2.29
1247 1287 5.926542 GCTTCATCACGGTATGTATGTATGT 59.073 40.000 0.00 0.00 0.00 2.29
1251 1291 8.117813 TCATCACGGTATGTATGTATGTATGT 57.882 34.615 0.00 0.00 0.00 2.29
1255 1295 9.016438 TCACGGTATGTATGTATGTATGTATGT 57.984 33.333 0.00 0.00 0.00 2.29
1308 1358 6.035650 CAGCCAATGCAGAATGTTTCTTAATG 59.964 38.462 0.00 0.00 38.11 1.90
1309 1359 5.870978 GCCAATGCAGAATGTTTCTTAATGT 59.129 36.000 0.00 0.00 38.11 2.71
1310 1360 6.183360 GCCAATGCAGAATGTTTCTTAATGTG 60.183 38.462 0.00 0.00 38.11 3.21
1311 1361 6.869913 CCAATGCAGAATGTTTCTTAATGTGT 59.130 34.615 0.00 0.00 38.11 3.72
1327 1398 1.835267 TGTGTGTAGGGGTGCGACT 60.835 57.895 0.00 0.00 0.00 4.18
1362 1433 3.878519 GAGTCTCCGTCGGGCGAG 61.879 72.222 12.29 1.30 44.77 5.03
1539 1610 4.554363 CCGAGCTACGAGGTGCCG 62.554 72.222 7.07 0.00 45.77 5.69
1602 1673 4.735358 GGCAACTTCCCGGTCCCC 62.735 72.222 0.00 0.00 0.00 4.81
1802 1873 3.127533 GCGGCTGCGGAAGATGTT 61.128 61.111 11.68 0.00 0.00 2.71
1944 2015 4.980805 TCGGACAACACGCTGGCC 62.981 66.667 0.00 0.00 41.65 5.36
2108 2179 0.893270 CGGATGGTGAACAAGGCCAA 60.893 55.000 5.01 0.00 35.74 4.52
2187 2258 3.432749 AGATGATCAACTGGTTCATCCGG 60.433 47.826 4.45 0.00 44.36 5.14
2226 2298 0.681175 AAGTTGCCTTTGCCATCCAC 59.319 50.000 0.00 0.00 36.33 4.02
2234 2306 1.684983 CTTTGCCATCCACATCCATCC 59.315 52.381 0.00 0.00 0.00 3.51
2235 2307 0.630134 TTGCCATCCACATCCATCCA 59.370 50.000 0.00 0.00 0.00 3.41
2236 2308 0.854908 TGCCATCCACATCCATCCAT 59.145 50.000 0.00 0.00 0.00 3.41
2237 2309 1.202964 TGCCATCCACATCCATCCATC 60.203 52.381 0.00 0.00 0.00 3.51
2238 2310 1.075050 GCCATCCACATCCATCCATCT 59.925 52.381 0.00 0.00 0.00 2.90
2239 2311 2.878935 GCCATCCACATCCATCCATCTC 60.879 54.545 0.00 0.00 0.00 2.75
2240 2312 2.290768 CCATCCACATCCATCCATCTCC 60.291 54.545 0.00 0.00 0.00 3.71
2241 2313 2.502068 TCCACATCCATCCATCTCCT 57.498 50.000 0.00 0.00 0.00 3.69
2242 2314 2.333069 TCCACATCCATCCATCTCCTC 58.667 52.381 0.00 0.00 0.00 3.71
2245 2317 2.029200 CACATCCATCCATCTCCTCTCG 60.029 54.545 0.00 0.00 0.00 4.04
2261 2333 2.304761 CTCTCGGCTCTCCTACTCCTAT 59.695 54.545 0.00 0.00 0.00 2.57
2353 2443 3.519579 TGCATTGGTCGCCATTTTATTG 58.480 40.909 0.00 0.00 31.53 1.90
2558 2659 8.411683 ACTTCTACCGTTTTATCCATACTACAG 58.588 37.037 0.00 0.00 0.00 2.74
2560 2661 8.978874 TCTACCGTTTTATCCATACTACAGTA 57.021 34.615 0.00 0.00 34.67 2.74
2562 2663 7.408756 ACCGTTTTATCCATACTACAGTACA 57.591 36.000 0.00 0.00 32.72 2.90
2564 2665 8.480501 ACCGTTTTATCCATACTACAGTACAAT 58.519 33.333 0.00 0.00 32.72 2.71
2565 2666 8.761497 CCGTTTTATCCATACTACAGTACAATG 58.239 37.037 0.00 0.00 32.72 2.82
2566 2667 8.273557 CGTTTTATCCATACTACAGTACAATGC 58.726 37.037 0.00 0.00 32.72 3.56
2567 2668 9.326413 GTTTTATCCATACTACAGTACAATGCT 57.674 33.333 0.00 0.00 32.72 3.79
2571 2672 7.039313 TCCATACTACAGTACAATGCTAGTG 57.961 40.000 0.00 0.00 32.72 2.74
2593 2694 6.386927 AGTGTTATCAATGACCCTTGATCCTA 59.613 38.462 2.78 0.00 43.16 2.94
2594 2695 6.708054 GTGTTATCAATGACCCTTGATCCTAG 59.292 42.308 2.78 0.00 43.16 3.02
2595 2696 6.386927 TGTTATCAATGACCCTTGATCCTAGT 59.613 38.462 2.78 0.00 43.16 2.57
2611 2712 8.255111 TGATCCTAGTATATCATTATGCAGGG 57.745 38.462 0.00 0.00 0.00 4.45
2723 2827 5.682943 ACACAACACACCAATGTACATAC 57.317 39.130 9.21 0.00 36.72 2.39
2724 2828 5.373222 ACACAACACACCAATGTACATACT 58.627 37.500 9.21 0.00 36.72 2.12
2725 2829 6.526526 ACACAACACACCAATGTACATACTA 58.473 36.000 9.21 0.00 36.72 1.82
2726 2830 7.165485 ACACAACACACCAATGTACATACTAT 58.835 34.615 9.21 0.00 36.72 2.12
2727 2831 8.315482 ACACAACACACCAATGTACATACTATA 58.685 33.333 9.21 0.00 36.72 1.31
2731 2835 8.712285 ACACACCAATGTACATACTATAACAC 57.288 34.615 9.21 0.00 36.72 3.32
2797 2901 4.201891 CGTACGTGACTACTTTGCTAGGAT 60.202 45.833 7.22 0.00 0.00 3.24
2798 2902 4.803098 ACGTGACTACTTTGCTAGGATT 57.197 40.909 0.00 0.00 0.00 3.01
2799 2903 5.909621 ACGTGACTACTTTGCTAGGATTA 57.090 39.130 0.00 0.00 0.00 1.75
2800 2904 5.892568 ACGTGACTACTTTGCTAGGATTAG 58.107 41.667 0.00 0.00 0.00 1.73
2801 2905 5.651139 ACGTGACTACTTTGCTAGGATTAGA 59.349 40.000 0.00 0.00 0.00 2.10
2802 2906 6.152323 ACGTGACTACTTTGCTAGGATTAGAA 59.848 38.462 0.00 0.00 0.00 2.10
2803 2907 7.147880 ACGTGACTACTTTGCTAGGATTAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
2840 2944 1.617357 AGGAACCACCGAGTGAACTAC 59.383 52.381 5.71 0.00 44.74 2.73
2909 3013 0.955428 TTCACACGGCAATGAGGAGC 60.955 55.000 0.00 0.00 0.00 4.70
2922 3026 5.884792 GCAATGAGGAGCTTTGCCTATATAT 59.115 40.000 8.58 0.00 46.34 0.86
2923 3027 7.050377 GCAATGAGGAGCTTTGCCTATATATA 58.950 38.462 8.58 0.00 46.34 0.86
2924 3028 7.718753 GCAATGAGGAGCTTTGCCTATATATAT 59.281 37.037 8.58 0.00 46.34 0.86
3075 3215 6.519721 GCAGGATTCTATGTAGTGGTGATGAT 60.520 42.308 0.00 0.00 0.00 2.45
3079 3219 9.376075 GGATTCTATGTAGTGGTGATGATAATG 57.624 37.037 0.00 0.00 0.00 1.90
3145 3285 2.010145 TTACTAGCGCTGCAAGAAGG 57.990 50.000 22.90 2.29 34.07 3.46
3146 3286 0.895530 TACTAGCGCTGCAAGAAGGT 59.104 50.000 22.90 8.06 34.07 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.820871 AGGCGCTGTTTGGACAAAAA 59.179 45.000 7.64 0.00 34.85 1.94
22 23 0.820871 AAGGCGCTGTTTGGACAAAA 59.179 45.000 7.64 0.00 34.85 2.44
23 24 1.681538 TAAGGCGCTGTTTGGACAAA 58.318 45.000 7.64 0.00 34.85 2.83
24 25 1.681538 TTAAGGCGCTGTTTGGACAA 58.318 45.000 7.64 0.00 34.85 3.18
25 26 1.681538 TTTAAGGCGCTGTTTGGACA 58.318 45.000 7.64 0.00 0.00 4.02
26 27 2.390938 GTTTTAAGGCGCTGTTTGGAC 58.609 47.619 7.64 0.00 0.00 4.02
27 28 1.338655 GGTTTTAAGGCGCTGTTTGGA 59.661 47.619 7.64 0.00 0.00 3.53
28 29 1.604438 GGGTTTTAAGGCGCTGTTTGG 60.604 52.381 7.64 0.00 0.00 3.28
29 30 1.067821 TGGGTTTTAAGGCGCTGTTTG 59.932 47.619 7.64 0.00 0.00 2.93
30 31 1.404843 TGGGTTTTAAGGCGCTGTTT 58.595 45.000 7.64 2.23 0.00 2.83
31 32 1.067974 GTTGGGTTTTAAGGCGCTGTT 59.932 47.619 7.64 3.81 0.00 3.16
32 33 0.671796 GTTGGGTTTTAAGGCGCTGT 59.328 50.000 7.64 0.00 0.00 4.40
33 34 0.038618 GGTTGGGTTTTAAGGCGCTG 60.039 55.000 7.64 0.00 0.00 5.18
34 35 1.183030 GGGTTGGGTTTTAAGGCGCT 61.183 55.000 7.64 0.00 0.00 5.92
35 36 1.290955 GGGTTGGGTTTTAAGGCGC 59.709 57.895 0.00 0.00 0.00 6.53
36 37 1.041437 TTGGGTTGGGTTTTAAGGCG 58.959 50.000 0.00 0.00 0.00 5.52
37 38 1.763545 TGTTGGGTTGGGTTTTAAGGC 59.236 47.619 0.00 0.00 0.00 4.35
38 39 2.766828 TGTGTTGGGTTGGGTTTTAAGG 59.233 45.455 0.00 0.00 0.00 2.69
39 40 3.195825 TGTGTGTTGGGTTGGGTTTTAAG 59.804 43.478 0.00 0.00 0.00 1.85
40 41 3.170717 TGTGTGTTGGGTTGGGTTTTAA 58.829 40.909 0.00 0.00 0.00 1.52
41 42 2.816411 TGTGTGTTGGGTTGGGTTTTA 58.184 42.857 0.00 0.00 0.00 1.52
42 43 1.645710 TGTGTGTTGGGTTGGGTTTT 58.354 45.000 0.00 0.00 0.00 2.43
43 44 1.276705 GTTGTGTGTTGGGTTGGGTTT 59.723 47.619 0.00 0.00 0.00 3.27
44 45 0.899019 GTTGTGTGTTGGGTTGGGTT 59.101 50.000 0.00 0.00 0.00 4.11
45 46 0.251832 TGTTGTGTGTTGGGTTGGGT 60.252 50.000 0.00 0.00 0.00 4.51
46 47 0.898320 TTGTTGTGTGTTGGGTTGGG 59.102 50.000 0.00 0.00 0.00 4.12
47 48 2.739379 GTTTTGTTGTGTGTTGGGTTGG 59.261 45.455 0.00 0.00 0.00 3.77
48 49 3.393800 TGTTTTGTTGTGTGTTGGGTTG 58.606 40.909 0.00 0.00 0.00 3.77
49 50 3.753294 TGTTTTGTTGTGTGTTGGGTT 57.247 38.095 0.00 0.00 0.00 4.11
50 51 3.070302 AGTTGTTTTGTTGTGTGTTGGGT 59.930 39.130 0.00 0.00 0.00 4.51
51 52 3.431572 CAGTTGTTTTGTTGTGTGTTGGG 59.568 43.478 0.00 0.00 0.00 4.12
52 53 4.302455 TCAGTTGTTTTGTTGTGTGTTGG 58.698 39.130 0.00 0.00 0.00 3.77
53 54 5.220006 CGATCAGTTGTTTTGTTGTGTGTTG 60.220 40.000 0.00 0.00 0.00 3.33
54 55 4.856487 CGATCAGTTGTTTTGTTGTGTGTT 59.144 37.500 0.00 0.00 0.00 3.32
55 56 4.083003 ACGATCAGTTGTTTTGTTGTGTGT 60.083 37.500 0.00 0.00 0.00 3.72
56 57 4.411327 ACGATCAGTTGTTTTGTTGTGTG 58.589 39.130 0.00 0.00 0.00 3.82
57 58 4.695217 ACGATCAGTTGTTTTGTTGTGT 57.305 36.364 0.00 0.00 0.00 3.72
58 59 8.678510 GTTATTACGATCAGTTGTTTTGTTGTG 58.321 33.333 0.00 0.00 0.00 3.33
59 60 8.776680 GTTATTACGATCAGTTGTTTTGTTGT 57.223 30.769 0.00 0.00 0.00 3.32
89 90 8.670135 GTTGTTTTATTGTGGGTTAAGCTTTTT 58.330 29.630 3.20 0.00 0.00 1.94
90 91 8.044309 AGTTGTTTTATTGTGGGTTAAGCTTTT 58.956 29.630 3.20 0.00 0.00 2.27
91 92 7.494298 CAGTTGTTTTATTGTGGGTTAAGCTTT 59.506 33.333 3.20 0.00 0.00 3.51
92 93 6.983890 CAGTTGTTTTATTGTGGGTTAAGCTT 59.016 34.615 3.48 3.48 0.00 3.74
93 94 6.322712 TCAGTTGTTTTATTGTGGGTTAAGCT 59.677 34.615 4.41 0.00 0.00 3.74
94 95 6.419710 GTCAGTTGTTTTATTGTGGGTTAAGC 59.580 38.462 0.00 0.00 0.00 3.09
95 96 7.712797 AGTCAGTTGTTTTATTGTGGGTTAAG 58.287 34.615 0.00 0.00 0.00 1.85
96 97 7.558444 AGAGTCAGTTGTTTTATTGTGGGTTAA 59.442 33.333 0.00 0.00 0.00 2.01
97 98 7.057894 AGAGTCAGTTGTTTTATTGTGGGTTA 58.942 34.615 0.00 0.00 0.00 2.85
98 99 5.891551 AGAGTCAGTTGTTTTATTGTGGGTT 59.108 36.000 0.00 0.00 0.00 4.11
99 100 5.445964 AGAGTCAGTTGTTTTATTGTGGGT 58.554 37.500 0.00 0.00 0.00 4.51
100 101 7.504924 TTAGAGTCAGTTGTTTTATTGTGGG 57.495 36.000 0.00 0.00 0.00 4.61
132 133 9.869757 ACTTTTAGTTGTAAGTTCAGCATTTTT 57.130 25.926 0.00 0.00 30.72 1.94
133 134 9.301153 CACTTTTAGTTGTAAGTTCAGCATTTT 57.699 29.630 0.00 0.00 32.50 1.82
134 135 8.682710 TCACTTTTAGTTGTAAGTTCAGCATTT 58.317 29.630 0.00 0.00 32.50 2.32
135 136 8.220755 TCACTTTTAGTTGTAAGTTCAGCATT 57.779 30.769 0.00 0.00 32.50 3.56
136 137 7.801716 TCACTTTTAGTTGTAAGTTCAGCAT 57.198 32.000 0.00 0.00 32.50 3.79
137 138 7.618502 TTCACTTTTAGTTGTAAGTTCAGCA 57.381 32.000 0.00 0.00 32.50 4.41
138 139 8.905103 TTTTCACTTTTAGTTGTAAGTTCAGC 57.095 30.769 0.00 0.00 32.50 4.26
140 141 9.332301 CGTTTTTCACTTTTAGTTGTAAGTTCA 57.668 29.630 0.00 0.00 32.50 3.18
141 142 8.791605 CCGTTTTTCACTTTTAGTTGTAAGTTC 58.208 33.333 0.00 0.00 32.50 3.01
142 143 7.274033 GCCGTTTTTCACTTTTAGTTGTAAGTT 59.726 33.333 0.00 0.00 32.50 2.66
143 144 6.748658 GCCGTTTTTCACTTTTAGTTGTAAGT 59.251 34.615 0.00 0.00 35.06 2.24
144 145 6.075780 CGCCGTTTTTCACTTTTAGTTGTAAG 60.076 38.462 0.00 0.00 0.00 2.34
145 146 5.738225 CGCCGTTTTTCACTTTTAGTTGTAA 59.262 36.000 0.00 0.00 0.00 2.41
146 147 5.264712 CGCCGTTTTTCACTTTTAGTTGTA 58.735 37.500 0.00 0.00 0.00 2.41
147 148 4.099824 CGCCGTTTTTCACTTTTAGTTGT 58.900 39.130 0.00 0.00 0.00 3.32
148 149 3.061469 GCGCCGTTTTTCACTTTTAGTTG 60.061 43.478 0.00 0.00 0.00 3.16
149 150 3.110358 GCGCCGTTTTTCACTTTTAGTT 58.890 40.909 0.00 0.00 0.00 2.24
150 151 2.097791 TGCGCCGTTTTTCACTTTTAGT 59.902 40.909 4.18 0.00 0.00 2.24
151 152 2.719046 CTGCGCCGTTTTTCACTTTTAG 59.281 45.455 4.18 0.00 0.00 1.85
152 153 2.722071 CTGCGCCGTTTTTCACTTTTA 58.278 42.857 4.18 0.00 0.00 1.52
153 154 1.555477 CTGCGCCGTTTTTCACTTTT 58.445 45.000 4.18 0.00 0.00 2.27
154 155 0.869880 GCTGCGCCGTTTTTCACTTT 60.870 50.000 4.18 0.00 0.00 2.66
155 156 1.299089 GCTGCGCCGTTTTTCACTT 60.299 52.632 4.18 0.00 0.00 3.16
156 157 1.999071 TTGCTGCGCCGTTTTTCACT 61.999 50.000 4.18 0.00 0.00 3.41
157 158 1.142778 TTTGCTGCGCCGTTTTTCAC 61.143 50.000 4.18 0.00 0.00 3.18
158 159 0.869454 CTTTGCTGCGCCGTTTTTCA 60.869 50.000 4.18 0.00 0.00 2.69
159 160 1.845985 CTTTGCTGCGCCGTTTTTC 59.154 52.632 4.18 0.00 0.00 2.29
160 161 2.237066 GCTTTGCTGCGCCGTTTTT 61.237 52.632 4.18 0.00 0.00 1.94
161 162 2.658268 GCTTTGCTGCGCCGTTTT 60.658 55.556 4.18 0.00 0.00 2.43
173 174 4.724697 CTGGTGACGCGCGCTTTG 62.725 66.667 32.58 16.59 0.00 2.77
178 179 4.778415 ACTAGCTGGTGACGCGCG 62.778 66.667 30.96 30.96 35.50 6.86
179 180 2.881352 GACTAGCTGGTGACGCGC 60.881 66.667 7.76 0.00 35.50 6.86
180 181 1.801913 GTGACTAGCTGGTGACGCG 60.802 63.158 7.76 3.53 35.50 6.01
181 182 0.108615 ATGTGACTAGCTGGTGACGC 60.109 55.000 14.57 5.53 0.00 5.19
182 183 1.995484 CAATGTGACTAGCTGGTGACG 59.005 52.381 14.57 0.00 0.00 4.35
183 184 3.319137 TCAATGTGACTAGCTGGTGAC 57.681 47.619 12.82 12.82 0.00 3.67
184 185 3.306989 CCTTCAATGTGACTAGCTGGTGA 60.307 47.826 7.76 0.00 0.00 4.02
185 186 3.005554 CCTTCAATGTGACTAGCTGGTG 58.994 50.000 7.76 0.00 0.00 4.17
186 187 2.616510 GCCTTCAATGTGACTAGCTGGT 60.617 50.000 0.69 0.69 0.00 4.00
187 188 2.012673 GCCTTCAATGTGACTAGCTGG 58.987 52.381 0.00 0.00 0.00 4.85
188 189 2.012673 GGCCTTCAATGTGACTAGCTG 58.987 52.381 0.00 0.00 0.00 4.24
189 190 1.912043 AGGCCTTCAATGTGACTAGCT 59.088 47.619 0.00 0.00 0.00 3.32
190 191 2.409948 AGGCCTTCAATGTGACTAGC 57.590 50.000 0.00 0.00 0.00 3.42
191 192 3.942829 TCAAGGCCTTCAATGTGACTAG 58.057 45.455 17.29 0.00 0.00 2.57
192 193 4.574674 ATCAAGGCCTTCAATGTGACTA 57.425 40.909 17.29 0.00 0.00 2.59
193 194 2.957402 TCAAGGCCTTCAATGTGACT 57.043 45.000 17.29 0.00 0.00 3.41
194 195 5.643379 TTAATCAAGGCCTTCAATGTGAC 57.357 39.130 17.29 0.00 0.00 3.67
217 218 1.075374 TGCTTGCACCAGGGTTAATCT 59.925 47.619 0.00 0.00 0.00 2.40
349 350 4.821805 TGAGTTTCTAACCTCTTTGCCAAG 59.178 41.667 0.00 0.00 0.00 3.61
514 533 2.744202 GGCCCGATCAGCATAATAACTG 59.256 50.000 7.01 0.00 35.15 3.16
515 534 2.612972 CGGCCCGATCAGCATAATAACT 60.613 50.000 0.00 0.00 0.00 2.24
530 549 0.891373 AGAGTCATCATATCGGCCCG 59.109 55.000 0.00 0.00 0.00 6.13
551 570 1.956629 CTGCGACGGACCAACCCTAT 61.957 60.000 0.00 0.00 34.64 2.57
560 579 4.415332 TTCTCGCCTGCGACGGAC 62.415 66.667 10.61 0.00 44.01 4.79
565 590 0.815095 TTATCAGTTCTCGCCTGCGA 59.185 50.000 14.13 14.13 46.87 5.10
566 591 1.640428 TTTATCAGTTCTCGCCTGCG 58.360 50.000 4.92 4.92 41.35 5.18
567 592 4.592179 GAAATTTATCAGTTCTCGCCTGC 58.408 43.478 0.00 0.00 0.00 4.85
568 593 4.566759 TCGAAATTTATCAGTTCTCGCCTG 59.433 41.667 0.00 0.00 0.00 4.85
569 594 4.755411 TCGAAATTTATCAGTTCTCGCCT 58.245 39.130 0.00 0.00 0.00 5.52
570 595 5.464965 TTCGAAATTTATCAGTTCTCGCC 57.535 39.130 0.00 0.00 0.00 5.54
571 596 7.201240 GGTTTTTCGAAATTTATCAGTTCTCGC 60.201 37.037 12.12 0.00 0.00 5.03
572 597 7.801315 TGGTTTTTCGAAATTTATCAGTTCTCG 59.199 33.333 12.12 0.00 0.00 4.04
640 665 6.592607 TCAAGGTAGTAGTTTTTAGGCATTCG 59.407 38.462 0.00 0.00 0.00 3.34
652 679 6.272558 ACTCCCAGAAAATCAAGGTAGTAGTT 59.727 38.462 0.00 0.00 0.00 2.24
653 680 5.785940 ACTCCCAGAAAATCAAGGTAGTAGT 59.214 40.000 0.00 0.00 0.00 2.73
654 681 6.109359 CACTCCCAGAAAATCAAGGTAGTAG 58.891 44.000 0.00 0.00 0.00 2.57
655 682 5.570844 GCACTCCCAGAAAATCAAGGTAGTA 60.571 44.000 0.00 0.00 0.00 1.82
656 683 4.807643 GCACTCCCAGAAAATCAAGGTAGT 60.808 45.833 0.00 0.00 0.00 2.73
657 684 3.691609 GCACTCCCAGAAAATCAAGGTAG 59.308 47.826 0.00 0.00 0.00 3.18
658 685 3.073798 TGCACTCCCAGAAAATCAAGGTA 59.926 43.478 0.00 0.00 0.00 3.08
694 721 2.039418 ACCACATGCGAGGCTAGAATA 58.961 47.619 0.00 0.00 0.00 1.75
758 794 6.431234 GGTCAAACTAGCCTGGATATATTTGG 59.569 42.308 20.04 8.92 0.00 3.28
823 859 1.926511 CTTTAGCCGGCCACTTGCTG 61.927 60.000 26.15 1.35 46.56 4.41
857 893 1.048601 TTCCAGAGGTCGAGCAACTT 58.951 50.000 18.15 0.00 0.00 2.66
858 894 1.048601 TTTCCAGAGGTCGAGCAACT 58.951 50.000 18.15 12.51 0.00 3.16
873 909 2.787129 GCTTAAGTGCGTGTTTGTTTCC 59.213 45.455 4.02 0.00 0.00 3.13
923 959 0.744281 TCGACGGAATGAGCTGCATA 59.256 50.000 1.02 0.00 35.78 3.14
953 989 0.101579 GAAGAGGTGAGGCGAGCTAC 59.898 60.000 0.00 0.00 0.00 3.58
1022 1062 0.041833 AAGGGAGACTAGGAGCAGCA 59.958 55.000 0.00 0.00 0.00 4.41
1240 1280 8.966868 TCACCGATCATACATACATACATACAT 58.033 33.333 0.00 0.00 0.00 2.29
1241 1281 8.343168 TCACCGATCATACATACATACATACA 57.657 34.615 0.00 0.00 0.00 2.29
1242 1282 9.452065 GATCACCGATCATACATACATACATAC 57.548 37.037 0.00 0.00 38.77 2.39
1243 1283 9.184523 TGATCACCGATCATACATACATACATA 57.815 33.333 2.56 0.00 43.11 2.29
1308 1358 1.666872 GTCGCACCCCTACACACAC 60.667 63.158 0.00 0.00 0.00 3.82
1309 1359 1.812686 GAGTCGCACCCCTACACACA 61.813 60.000 0.00 0.00 0.00 3.72
1310 1360 1.080025 GAGTCGCACCCCTACACAC 60.080 63.158 0.00 0.00 0.00 3.82
1311 1361 2.632544 CGAGTCGCACCCCTACACA 61.633 63.158 0.00 0.00 0.00 3.72
1362 1433 2.416432 CGACTCCTTCTCCGGGACC 61.416 68.421 0.00 0.00 0.00 4.46
1416 1487 3.499737 GCCTTGGCCACGTCGATG 61.500 66.667 3.88 2.26 0.00 3.84
1521 1592 4.208686 GGCACCTCGTAGCTCGGG 62.209 72.222 0.00 0.00 40.13 5.14
1915 1986 4.459089 GTCCGAGGTCAGCAGGCC 62.459 72.222 0.00 0.00 0.00 5.19
1944 2015 4.135153 CTCGTCTGCGGGTCCAGG 62.135 72.222 0.00 0.00 38.89 4.45
2108 2179 3.480133 GCATCCAGCGTACCCCCT 61.480 66.667 0.00 0.00 0.00 4.79
2240 2312 0.472471 AGGAGTAGGAGAGCCGAGAG 59.528 60.000 0.00 0.00 39.96 3.20
2241 2313 1.803866 TAGGAGTAGGAGAGCCGAGA 58.196 55.000 0.00 0.00 39.96 4.04
2242 2314 2.871096 ATAGGAGTAGGAGAGCCGAG 57.129 55.000 0.00 0.00 39.96 4.63
2245 2317 3.536075 AGGAATAGGAGTAGGAGAGCC 57.464 52.381 0.00 0.00 0.00 4.70
2287 2359 5.398353 GCCGGAGTGGGTATATATAGAGGTA 60.398 48.000 5.05 0.00 38.63 3.08
2353 2443 8.969267 CATCATTAGACCGAAGACAGTAATAAC 58.031 37.037 0.00 0.00 0.00 1.89
2436 2526 7.900782 TTCCAAGCTGATAAGTAGTAACAAC 57.099 36.000 0.00 0.00 0.00 3.32
2442 2532 9.113838 CACATTTATTCCAAGCTGATAAGTAGT 57.886 33.333 0.00 0.00 0.00 2.73
2443 2533 9.330063 TCACATTTATTCCAAGCTGATAAGTAG 57.670 33.333 0.00 0.00 0.00 2.57
2464 2554 4.401202 GGGATGGTTTATTCGGTTTCACAT 59.599 41.667 0.00 0.00 0.00 3.21
2466 2556 4.014406 AGGGATGGTTTATTCGGTTTCAC 58.986 43.478 0.00 0.00 0.00 3.18
2467 2557 4.310022 AGGGATGGTTTATTCGGTTTCA 57.690 40.909 0.00 0.00 0.00 2.69
2510 2611 7.108841 AGTACTAGTTGAAGAACAAGTCACA 57.891 36.000 0.00 0.00 41.64 3.58
2558 2659 7.254795 GGGTCATTGATAACACTAGCATTGTAC 60.255 40.741 0.00 0.00 30.48 2.90
2560 2661 5.590259 GGGTCATTGATAACACTAGCATTGT 59.410 40.000 0.00 0.00 30.48 2.71
2562 2663 6.006275 AGGGTCATTGATAACACTAGCATT 57.994 37.500 0.00 0.00 0.00 3.56
2564 2665 5.045942 TCAAGGGTCATTGATAACACTAGCA 60.046 40.000 0.00 0.00 34.31 3.49
2565 2666 5.428253 TCAAGGGTCATTGATAACACTAGC 58.572 41.667 0.00 0.00 34.31 3.42
2593 2694 4.537688 AGTGGCCCTGCATAATGATATACT 59.462 41.667 0.00 0.00 0.00 2.12
2594 2695 4.848357 AGTGGCCCTGCATAATGATATAC 58.152 43.478 0.00 0.00 0.00 1.47
2595 2696 5.519183 AAGTGGCCCTGCATAATGATATA 57.481 39.130 0.00 0.00 0.00 0.86
2660 2761 5.444613 CGTGAGAACAGATGGTACGAAAATG 60.445 44.000 0.00 0.00 32.36 2.32
2727 2831 9.748708 GGTTTATATATTGTGCATCATTGTGTT 57.251 29.630 0.00 0.00 0.00 3.32
2731 2835 7.028962 CGGGGTTTATATATTGTGCATCATTG 58.971 38.462 0.00 0.00 0.00 2.82
2797 2901 9.295825 TCCTGAATTGTTGCTTCTAAATTCTAA 57.704 29.630 8.07 0.00 38.97 2.10
2798 2902 8.862325 TCCTGAATTGTTGCTTCTAAATTCTA 57.138 30.769 8.07 0.00 38.97 2.10
2799 2903 7.765695 TCCTGAATTGTTGCTTCTAAATTCT 57.234 32.000 8.07 0.00 38.97 2.40
2800 2904 7.329471 GGTTCCTGAATTGTTGCTTCTAAATTC 59.671 37.037 0.00 0.00 38.78 2.17
2801 2905 7.154656 GGTTCCTGAATTGTTGCTTCTAAATT 58.845 34.615 0.00 0.00 0.00 1.82
2802 2906 6.267471 TGGTTCCTGAATTGTTGCTTCTAAAT 59.733 34.615 0.00 0.00 0.00 1.40
2803 2907 5.596361 TGGTTCCTGAATTGTTGCTTCTAAA 59.404 36.000 0.00 0.00 0.00 1.85
2840 2944 3.663995 TTGAAATGCAGAATGTGGTGG 57.336 42.857 0.00 0.00 39.31 4.61
2881 2985 2.320587 GCCGTGTGAAGCCTCTGTG 61.321 63.158 0.00 0.00 0.00 3.66
2995 3099 6.622833 ATTGATTTTGTGCTTTCCCTTTTG 57.377 33.333 0.00 0.00 0.00 2.44
2996 3100 7.278875 TGTATTGATTTTGTGCTTTCCCTTTT 58.721 30.769 0.00 0.00 0.00 2.27
3133 3273 2.463589 TACCCCACCTTCTTGCAGCG 62.464 60.000 0.00 0.00 0.00 5.18
3134 3274 0.678048 CTACCCCACCTTCTTGCAGC 60.678 60.000 0.00 0.00 0.00 5.25
3145 3285 0.609662 TGGTACGCTTTCTACCCCAC 59.390 55.000 0.00 0.00 33.80 4.61
3146 3286 1.208535 CATGGTACGCTTTCTACCCCA 59.791 52.381 0.00 0.00 33.80 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.