Multiple sequence alignment - TraesCS7B01G130400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G130400 chr7B 100.000 4792 0 0 1 4792 156756552 156751761 0.000000e+00 8850.0
1 TraesCS7B01G130400 chr7B 85.172 290 38 5 2158 2443 158075302 158075590 4.690000e-75 292.0
2 TraesCS7B01G130400 chr7B 85.526 152 22 0 3108 3259 158076128 158076279 4.960000e-35 159.0
3 TraesCS7B01G130400 chrUn 92.914 3147 145 39 932 4019 92297694 92294567 0.000000e+00 4505.0
4 TraesCS7B01G130400 chrUn 84.549 233 15 10 468 682 92298298 92298069 1.350000e-50 211.0
5 TraesCS7B01G130400 chrUn 85.526 152 22 0 3108 3259 478426568 478426417 4.960000e-35 159.0
6 TraesCS7B01G130400 chrUn 79.227 207 15 12 12 204 92298865 92298673 8.420000e-23 119.0
7 TraesCS7B01G130400 chrUn 84.259 108 13 1 4015 4118 100702173 100702280 8.480000e-18 102.0
8 TraesCS7B01G130400 chrUn 93.478 46 3 0 4316 4361 235115268 235115223 8.610000e-08 69.4
9 TraesCS7B01G130400 chr7A 90.686 3060 147 61 895 3883 202854997 202852005 0.000000e+00 3945.0
10 TraesCS7B01G130400 chr7A 85.929 533 55 12 4277 4792 202851418 202850889 7.010000e-153 551.0
11 TraesCS7B01G130400 chr7A 85.517 290 37 5 2158 2443 203863648 203863936 1.010000e-76 298.0
12 TraesCS7B01G130400 chr7A 86.522 230 13 11 468 682 202855567 202855341 2.230000e-58 237.0
13 TraesCS7B01G130400 chr7A 83.553 152 25 0 3108 3259 203864477 203864628 5.000000e-30 143.0
14 TraesCS7B01G130400 chr7A 96.721 61 1 1 806 866 202855061 202855002 3.050000e-17 100.0
15 TraesCS7B01G130400 chr7A 82.979 94 10 6 112 204 202855978 202855890 3.980000e-11 80.5
16 TraesCS7B01G130400 chr4D 84.308 325 38 11 2157 2470 394967793 394968115 6.030000e-79 305.0
17 TraesCS7B01G130400 chr4D 77.005 187 34 7 4018 4198 484458591 484458774 1.100000e-16 99.0
18 TraesCS7B01G130400 chr7D 85.517 290 37 5 2158 2443 194224549 194224837 1.010000e-76 298.0
19 TraesCS7B01G130400 chr7D 85.526 152 22 0 3108 3259 194225368 194225519 4.960000e-35 159.0
20 TraesCS7B01G130400 chr4B 84.244 311 37 8 2162 2463 486207210 486206903 4.690000e-75 292.0
21 TraesCS7B01G130400 chr4A 83.596 317 40 10 2157 2463 76627411 76627725 2.180000e-73 287.0
22 TraesCS7B01G130400 chr3B 90.265 113 11 0 3625 3737 4326418 4326530 1.070000e-31 148.0
23 TraesCS7B01G130400 chr3B 75.936 187 39 5 4016 4198 30937381 30937197 1.840000e-14 91.6
24 TraesCS7B01G130400 chr2A 82.407 108 15 2 4015 4118 425862821 425862928 1.840000e-14 91.6
25 TraesCS7B01G130400 chr6A 93.220 59 4 0 3155 3213 14411363 14411305 2.380000e-13 87.9
26 TraesCS7B01G130400 chr3A 75.145 173 39 2 4015 4183 57962002 57961830 1.430000e-10 78.7
27 TraesCS7B01G130400 chr2B 81.250 96 13 2 4016 4107 674721037 674720943 6.650000e-09 73.1
28 TraesCS7B01G130400 chr5D 80.851 94 14 2 4018 4107 35490038 35489945 2.390000e-08 71.3
29 TraesCS7B01G130400 chr3D 82.927 82 10 1 4019 4096 602807660 602807741 2.390000e-08 71.3
30 TraesCS7B01G130400 chr6D 91.837 49 4 0 3169 3217 473103195 473103243 8.610000e-08 69.4
31 TraesCS7B01G130400 chr6B 83.117 77 9 3 3169 3243 718476190 718476264 3.100000e-07 67.6
32 TraesCS7B01G130400 chr1B 76.033 121 28 1 4069 4189 646913257 646913376 1.440000e-05 62.1
33 TraesCS7B01G130400 chr2D 97.143 35 1 0 2219 2253 50237812 50237846 5.180000e-05 60.2
34 TraesCS7B01G130400 chr5A 89.130 46 5 0 4316 4361 555539103 555539058 1.860000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G130400 chr7B 156751761 156756552 4791 True 8850.000000 8850 100.000000 1 4792 1 chr7B.!!$R1 4791
1 TraesCS7B01G130400 chr7B 158075302 158076279 977 False 225.500000 292 85.349000 2158 3259 2 chr7B.!!$F1 1101
2 TraesCS7B01G130400 chrUn 92294567 92298865 4298 True 1611.666667 4505 85.563333 12 4019 3 chrUn.!!$R3 4007
3 TraesCS7B01G130400 chr7A 202850889 202855978 5089 True 982.700000 3945 88.567400 112 4792 5 chr7A.!!$R1 4680
4 TraesCS7B01G130400 chr7A 203863648 203864628 980 False 220.500000 298 84.535000 2158 3259 2 chr7A.!!$F1 1101
5 TraesCS7B01G130400 chr7D 194224549 194225519 970 False 228.500000 298 85.521500 2158 3259 2 chr7D.!!$F1 1101


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 668 0.030504 TGCATGCTGTGAACCAAACG 59.969 50.000 20.33 0.0 0.00 3.60 F
714 966 0.461339 GAGCGCATCTTAAACGGGGA 60.461 55.000 11.47 0.0 0.00 4.81 F
847 1215 0.737219 GCATGATGTGGCTTCAGACC 59.263 55.000 0.00 0.0 0.00 3.85 F
1380 1760 1.076485 ACCTGATGCATTGCCTCCC 60.076 57.895 6.12 0.0 0.00 4.30 F
2838 3361 0.392706 TTCGAAGCTCAGGTTCTGCA 59.607 50.000 14.56 0.0 37.82 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1862 0.322008 CCTGAGTGGGAGAAGTTGGC 60.322 60.000 0.0 0.0 0.00 4.52 R
2493 2882 0.539438 TGAAATGGAGGTGGTGGTGC 60.539 55.000 0.0 0.0 0.00 5.01 R
2588 2981 3.717294 GGCCAGTCCATCACCGGT 61.717 66.667 0.0 0.0 34.01 5.28 R
3075 3599 0.808125 GTCACCACAGCACAAACACA 59.192 50.000 0.0 0.0 0.00 3.72 R
4120 5128 0.038166 TGCTTGGCTTTGTAGGAGGG 59.962 55.000 0.0 0.0 0.00 4.30 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.733402 CGTTCTTTGCAGCCCCAACA 61.733 55.000 0.00 0.00 0.00 3.33
61 62 1.301165 CAGCCCCAACAGCAAAAGC 60.301 57.895 0.00 0.00 0.00 3.51
62 63 2.356194 GCCCCAACAGCAAAAGCG 60.356 61.111 0.00 0.00 0.00 4.68
64 65 1.007387 CCCCAACAGCAAAAGCGAC 60.007 57.895 0.00 0.00 0.00 5.19
66 67 1.646540 CCAACAGCAAAAGCGACGA 59.353 52.632 0.00 0.00 0.00 4.20
67 68 0.238289 CCAACAGCAAAAGCGACGAT 59.762 50.000 0.00 0.00 0.00 3.73
68 69 1.595609 CAACAGCAAAAGCGACGATC 58.404 50.000 0.00 0.00 0.00 3.69
69 70 1.069973 CAACAGCAAAAGCGACGATCA 60.070 47.619 0.00 0.00 0.00 2.92
70 71 1.225855 ACAGCAAAAGCGACGATCAA 58.774 45.000 0.00 0.00 0.00 2.57
72 73 2.236690 CAGCAAAAGCGACGATCAAAG 58.763 47.619 0.00 0.00 0.00 2.77
74 75 1.196808 GCAAAAGCGACGATCAAAGGA 59.803 47.619 0.00 0.00 0.00 3.36
76 77 1.726853 AAAGCGACGATCAAAGGAGG 58.273 50.000 0.00 0.00 0.00 4.30
80 81 1.103803 CGACGATCAAAGGAGGGAGA 58.896 55.000 0.00 0.00 0.00 3.71
81 82 1.202313 CGACGATCAAAGGAGGGAGAC 60.202 57.143 0.00 0.00 0.00 3.36
82 83 1.825474 GACGATCAAAGGAGGGAGACA 59.175 52.381 0.00 0.00 0.00 3.41
83 84 1.827969 ACGATCAAAGGAGGGAGACAG 59.172 52.381 0.00 0.00 0.00 3.51
84 85 2.103373 CGATCAAAGGAGGGAGACAGA 58.897 52.381 0.00 0.00 0.00 3.41
86 87 1.257743 TCAAAGGAGGGAGACAGACG 58.742 55.000 0.00 0.00 0.00 4.18
87 88 0.247736 CAAAGGAGGGAGACAGACGG 59.752 60.000 0.00 0.00 0.00 4.79
88 89 1.545706 AAAGGAGGGAGACAGACGGC 61.546 60.000 0.00 0.00 0.00 5.68
89 90 2.680352 GGAGGGAGACAGACGGCA 60.680 66.667 0.00 0.00 0.00 5.69
94 95 1.021390 GGGAGACAGACGGCAATGTG 61.021 60.000 0.00 0.00 0.00 3.21
127 150 3.205519 TCATTTCTCCCTCTTCCTCCA 57.794 47.619 0.00 0.00 0.00 3.86
134 157 2.125350 CTCTTCCTCCACGGCTGC 60.125 66.667 0.00 0.00 0.00 5.25
135 158 3.997064 CTCTTCCTCCACGGCTGCG 62.997 68.421 0.00 0.00 0.00 5.18
140 163 3.753434 CTCCACGGCTGCGTCTCT 61.753 66.667 0.00 0.00 0.00 3.10
142 165 2.811317 CCACGGCTGCGTCTCTTC 60.811 66.667 0.00 0.00 0.00 2.87
143 166 2.259818 CACGGCTGCGTCTCTTCT 59.740 61.111 0.00 0.00 0.00 2.85
145 168 1.373497 ACGGCTGCGTCTCTTCTTG 60.373 57.895 0.00 0.00 0.00 3.02
146 169 2.734673 CGGCTGCGTCTCTTCTTGC 61.735 63.158 0.00 0.00 0.00 4.01
147 170 2.394563 GGCTGCGTCTCTTCTTGCC 61.395 63.158 0.00 0.00 0.00 4.52
148 171 2.734673 GCTGCGTCTCTTCTTGCCG 61.735 63.158 0.00 0.00 0.00 5.69
149 172 1.080501 CTGCGTCTCTTCTTGCCGA 60.081 57.895 0.00 0.00 0.00 5.54
150 173 0.459237 CTGCGTCTCTTCTTGCCGAT 60.459 55.000 0.00 0.00 0.00 4.18
151 174 0.458543 TGCGTCTCTTCTTGCCGATC 60.459 55.000 0.00 0.00 0.00 3.69
152 175 1.148759 GCGTCTCTTCTTGCCGATCC 61.149 60.000 0.00 0.00 0.00 3.36
153 176 0.528684 CGTCTCTTCTTGCCGATCCC 60.529 60.000 0.00 0.00 0.00 3.85
154 177 0.179070 GTCTCTTCTTGCCGATCCCC 60.179 60.000 0.00 0.00 0.00 4.81
155 178 0.617535 TCTCTTCTTGCCGATCCCCA 60.618 55.000 0.00 0.00 0.00 4.96
156 179 0.253044 CTCTTCTTGCCGATCCCCAA 59.747 55.000 0.00 0.00 0.00 4.12
157 180 0.035439 TCTTCTTGCCGATCCCCAAC 60.035 55.000 0.00 0.00 0.00 3.77
218 280 1.339151 GGTTCGGGTCTTGCTCTGATT 60.339 52.381 0.00 0.00 0.00 2.57
222 284 1.363744 GGGTCTTGCTCTGATTCGTG 58.636 55.000 0.00 0.00 0.00 4.35
224 286 1.338200 GGTCTTGCTCTGATTCGTGGT 60.338 52.381 0.00 0.00 0.00 4.16
225 287 2.417719 GTCTTGCTCTGATTCGTGGTT 58.582 47.619 0.00 0.00 0.00 3.67
226 288 2.413453 GTCTTGCTCTGATTCGTGGTTC 59.587 50.000 0.00 0.00 0.00 3.62
227 289 2.037121 TCTTGCTCTGATTCGTGGTTCA 59.963 45.455 0.00 0.00 0.00 3.18
229 291 1.338105 TGCTCTGATTCGTGGTTCAGG 60.338 52.381 0.00 0.00 39.84 3.86
230 292 1.338200 GCTCTGATTCGTGGTTCAGGT 60.338 52.381 0.00 0.00 39.84 4.00
231 293 2.341257 CTCTGATTCGTGGTTCAGGTG 58.659 52.381 0.00 0.00 39.84 4.00
234 296 1.635663 GATTCGTGGTTCAGGTGGCG 61.636 60.000 0.00 0.00 0.00 5.69
235 297 3.818121 TTCGTGGTTCAGGTGGCGG 62.818 63.158 0.00 0.00 0.00 6.13
237 299 2.978010 GTGGTTCAGGTGGCGGTG 60.978 66.667 0.00 0.00 0.00 4.94
238 300 4.263572 TGGTTCAGGTGGCGGTGG 62.264 66.667 0.00 0.00 0.00 4.61
240 302 4.643387 GTTCAGGTGGCGGTGGCT 62.643 66.667 0.00 0.00 39.81 4.75
241 303 4.641645 TTCAGGTGGCGGTGGCTG 62.642 66.667 0.00 0.00 39.81 4.85
243 305 4.415150 CAGGTGGCGGTGGCTGAT 62.415 66.667 0.00 0.00 39.81 2.90
244 306 4.101448 AGGTGGCGGTGGCTGATC 62.101 66.667 0.00 0.00 39.81 2.92
245 307 4.101448 GGTGGCGGTGGCTGATCT 62.101 66.667 0.00 0.00 39.81 2.75
246 308 2.045926 GTGGCGGTGGCTGATCTT 60.046 61.111 0.00 0.00 39.81 2.40
247 309 2.109126 GTGGCGGTGGCTGATCTTC 61.109 63.158 0.00 0.00 39.81 2.87
250 312 1.092345 GGCGGTGGCTGATCTTCTTC 61.092 60.000 0.00 0.00 39.81 2.87
265 327 3.447586 TCTTCTTCTGATCCCAAGGTACG 59.552 47.826 0.00 0.00 0.00 3.67
276 338 0.248289 CAAGGTACGGTCCGTGGATT 59.752 55.000 27.20 14.57 41.39 3.01
281 346 1.068127 GTACGGTCCGTGGATTGCTAT 59.932 52.381 27.20 0.00 41.39 2.97
282 347 0.104304 ACGGTCCGTGGATTGCTATC 59.896 55.000 18.08 0.00 39.18 2.08
285 350 2.417719 GGTCCGTGGATTGCTATCATC 58.582 52.381 10.33 1.85 32.09 2.92
303 368 7.879160 GCTATCATCATCTTCTTCCTTCTCATT 59.121 37.037 0.00 0.00 0.00 2.57
305 370 7.434927 TCATCATCTTCTTCCTTCTCATTCT 57.565 36.000 0.00 0.00 0.00 2.40
317 382 5.814188 TCCTTCTCATTCTTGTGAATCGATG 59.186 40.000 0.00 0.00 40.61 3.84
319 384 3.873361 TCTCATTCTTGTGAATCGATGGC 59.127 43.478 0.00 0.00 40.61 4.40
333 435 2.881513 TCGATGGCTCTTGAGCTAGTAG 59.118 50.000 20.12 10.85 34.73 2.57
334 436 2.881513 CGATGGCTCTTGAGCTAGTAGA 59.118 50.000 20.12 0.00 34.73 2.59
335 437 3.304391 CGATGGCTCTTGAGCTAGTAGAC 60.304 52.174 20.12 4.58 34.73 2.59
351 453 5.854010 AGTAGACGATGCCTAATTCAAGA 57.146 39.130 0.00 0.00 0.00 3.02
358 460 9.429359 AGACGATGCCTAATTCAAGAATATTAG 57.571 33.333 0.00 0.00 35.22 1.73
363 465 8.396272 TGCCTAATTCAAGAATATTAGAAGGC 57.604 34.615 13.86 13.86 36.77 4.35
364 466 7.448469 TGCCTAATTCAAGAATATTAGAAGGCC 59.552 37.037 16.09 0.00 36.77 5.19
365 467 7.094162 GCCTAATTCAAGAATATTAGAAGGCCC 60.094 40.741 0.00 0.00 36.77 5.80
368 470 8.844865 AATTCAAGAATATTAGAAGGCCCTTT 57.155 30.769 0.00 0.00 0.00 3.11
369 471 8.844865 ATTCAAGAATATTAGAAGGCCCTTTT 57.155 30.769 0.00 0.00 0.00 2.27
370 472 9.936329 ATTCAAGAATATTAGAAGGCCCTTTTA 57.064 29.630 0.00 0.00 0.00 1.52
371 473 9.936329 TTCAAGAATATTAGAAGGCCCTTTTAT 57.064 29.630 0.00 0.00 0.00 1.40
372 474 9.354673 TCAAGAATATTAGAAGGCCCTTTTATG 57.645 33.333 0.00 0.00 0.00 1.90
373 475 8.579863 CAAGAATATTAGAAGGCCCTTTTATGG 58.420 37.037 0.00 0.00 0.00 2.74
375 477 7.725844 AGAATATTAGAAGGCCCTTTTATGGTG 59.274 37.037 0.00 0.00 0.00 4.17
376 478 2.532250 AGAAGGCCCTTTTATGGTGG 57.468 50.000 0.00 0.00 0.00 4.61
378 480 2.923629 AGAAGGCCCTTTTATGGTGGTA 59.076 45.455 0.00 0.00 0.00 3.25
385 528 4.385977 GCCCTTTTATGGTGGTAGTGGTAT 60.386 45.833 0.00 0.00 0.00 2.73
415 558 4.946160 TTCCTGGGGATTATTGTGTTCT 57.054 40.909 0.00 0.00 0.00 3.01
425 568 7.093509 GGGGATTATTGTGTTCTTTGTTGGTAT 60.094 37.037 0.00 0.00 0.00 2.73
427 570 9.353999 GGATTATTGTGTTCTTTGTTGGTATTC 57.646 33.333 0.00 0.00 0.00 1.75
454 638 1.728971 GCATATGCTCTCCGTACATGC 59.271 52.381 20.64 0.00 38.21 4.06
455 639 2.867647 GCATATGCTCTCCGTACATGCA 60.868 50.000 20.64 0.00 38.21 3.96
456 640 3.593096 CATATGCTCTCCGTACATGCAT 58.407 45.455 0.00 0.00 44.93 3.96
457 641 1.875009 ATGCTCTCCGTACATGCATG 58.125 50.000 25.09 25.09 41.93 4.06
458 642 0.811219 TGCTCTCCGTACATGCATGC 60.811 55.000 26.53 11.82 0.00 4.06
459 643 0.811219 GCTCTCCGTACATGCATGCA 60.811 55.000 26.53 25.04 0.00 3.96
460 644 1.875009 CTCTCCGTACATGCATGCAT 58.125 50.000 27.46 27.46 37.08 3.96
483 667 2.063266 CATGCATGCTGTGAACCAAAC 58.937 47.619 20.33 0.00 0.00 2.93
484 668 0.030504 TGCATGCTGTGAACCAAACG 59.969 50.000 20.33 0.00 0.00 3.60
520 707 8.754230 AGTAATTAGTTGGTTCTCTTAACGAC 57.246 34.615 0.00 0.00 0.00 4.34
542 729 3.118956 CCGAGCTGGAAGAATCTTGTACT 60.119 47.826 0.00 0.00 42.00 2.73
543 730 4.098044 CCGAGCTGGAAGAATCTTGTACTA 59.902 45.833 0.00 0.00 42.00 1.82
544 731 5.277825 CGAGCTGGAAGAATCTTGTACTAG 58.722 45.833 0.00 0.00 34.07 2.57
545 732 5.163602 CGAGCTGGAAGAATCTTGTACTAGT 60.164 44.000 0.00 0.00 34.07 2.57
546 733 6.613153 AGCTGGAAGAATCTTGTACTAGTT 57.387 37.500 0.00 0.00 34.07 2.24
547 734 6.635755 AGCTGGAAGAATCTTGTACTAGTTC 58.364 40.000 0.00 0.00 34.07 3.01
548 735 5.813157 GCTGGAAGAATCTTGTACTAGTTCC 59.187 44.000 0.00 13.79 34.07 3.62
550 737 5.783360 TGGAAGAATCTTGTACTAGTTCCCA 59.217 40.000 16.35 13.03 32.76 4.37
551 738 6.070767 TGGAAGAATCTTGTACTAGTTCCCAG 60.071 42.308 16.35 0.00 32.76 4.45
552 739 6.070710 GGAAGAATCTTGTACTAGTTCCCAGT 60.071 42.308 0.00 0.00 0.00 4.00
553 740 6.936968 AGAATCTTGTACTAGTTCCCAGTT 57.063 37.500 0.00 0.00 0.00 3.16
554 741 6.702329 AGAATCTTGTACTAGTTCCCAGTTG 58.298 40.000 0.00 0.00 0.00 3.16
614 811 6.040878 GGATCATCTTTTTGCTGAAATCCTG 58.959 40.000 0.00 0.00 31.48 3.86
654 851 4.243793 TGGATTTTGTCGGTGGGATATT 57.756 40.909 0.00 0.00 0.00 1.28
655 852 5.375283 TGGATTTTGTCGGTGGGATATTA 57.625 39.130 0.00 0.00 0.00 0.98
656 853 5.947663 TGGATTTTGTCGGTGGGATATTAT 58.052 37.500 0.00 0.00 0.00 1.28
657 854 7.080653 TGGATTTTGTCGGTGGGATATTATA 57.919 36.000 0.00 0.00 0.00 0.98
670 867 9.799106 GGTGGGATATTATAAATATGATGGAGG 57.201 37.037 0.00 0.00 0.00 4.30
671 868 9.289782 GTGGGATATTATAAATATGATGGAGGC 57.710 37.037 0.00 0.00 0.00 4.70
672 869 8.448008 TGGGATATTATAAATATGATGGAGGCC 58.552 37.037 0.00 0.00 0.00 5.19
673 870 7.890655 GGGATATTATAAATATGATGGAGGCCC 59.109 40.741 0.00 0.00 0.00 5.80
685 937 3.017048 TGGAGGCCCATGATTAAGTTG 57.983 47.619 0.00 0.00 37.58 3.16
713 965 0.462047 AGAGCGCATCTTAAACGGGG 60.462 55.000 11.47 0.00 32.99 5.73
714 966 0.461339 GAGCGCATCTTAAACGGGGA 60.461 55.000 11.47 0.00 0.00 4.81
716 968 1.021968 GCGCATCTTAAACGGGGATT 58.978 50.000 0.30 0.00 0.00 3.01
717 969 1.404035 GCGCATCTTAAACGGGGATTT 59.596 47.619 0.30 0.00 0.00 2.17
718 970 2.159296 GCGCATCTTAAACGGGGATTTT 60.159 45.455 0.30 0.00 0.00 1.82
719 971 3.674955 GCGCATCTTAAACGGGGATTTTT 60.675 43.478 0.30 0.00 0.00 1.94
720 972 4.102649 CGCATCTTAAACGGGGATTTTTC 58.897 43.478 0.00 0.00 0.00 2.29
721 973 4.380023 CGCATCTTAAACGGGGATTTTTCA 60.380 41.667 0.00 0.00 0.00 2.69
722 974 4.862574 GCATCTTAAACGGGGATTTTTCAC 59.137 41.667 0.00 0.00 0.00 3.18
731 983 4.265904 GGGGATTTTTCACCGTCATTTT 57.734 40.909 0.00 0.00 0.00 1.82
733 985 5.785243 GGGGATTTTTCACCGTCATTTTAA 58.215 37.500 0.00 0.00 0.00 1.52
734 986 6.224584 GGGGATTTTTCACCGTCATTTTAAA 58.775 36.000 0.00 0.00 0.00 1.52
735 987 6.706716 GGGGATTTTTCACCGTCATTTTAAAA 59.293 34.615 2.51 2.51 0.00 1.52
736 988 7.389330 GGGGATTTTTCACCGTCATTTTAAAAT 59.611 33.333 7.64 7.64 0.00 1.82
737 989 8.779303 GGGATTTTTCACCGTCATTTTAAAATT 58.221 29.630 10.77 0.00 0.00 1.82
743 995 7.527568 TCACCGTCATTTTAAAATTAACCCT 57.472 32.000 10.77 0.00 0.00 4.34
744 996 7.953752 TCACCGTCATTTTAAAATTAACCCTT 58.046 30.769 10.77 0.00 0.00 3.95
746 998 6.647481 ACCGTCATTTTAAAATTAACCCTTGC 59.353 34.615 10.77 0.00 0.00 4.01
747 999 6.871492 CCGTCATTTTAAAATTAACCCTTGCT 59.129 34.615 10.77 0.00 0.00 3.91
748 1000 7.148656 CCGTCATTTTAAAATTAACCCTTGCTG 60.149 37.037 10.77 0.00 0.00 4.41
749 1001 7.383843 CGTCATTTTAAAATTAACCCTTGCTGT 59.616 33.333 10.77 0.00 0.00 4.40
750 1002 9.699703 GTCATTTTAAAATTAACCCTTGCTGTA 57.300 29.630 10.77 0.00 0.00 2.74
763 1093 5.648092 ACCCTTGCTGTAATTATGTGTCTTC 59.352 40.000 0.00 0.00 0.00 2.87
796 1126 4.114073 CAAGAGAAAATGCTGCACAAACA 58.886 39.130 3.57 0.00 0.00 2.83
797 1127 3.709987 AGAGAAAATGCTGCACAAACAC 58.290 40.909 3.57 0.00 0.00 3.32
798 1128 2.796593 GAGAAAATGCTGCACAAACACC 59.203 45.455 3.57 0.00 0.00 4.16
799 1129 1.866601 GAAAATGCTGCACAAACACCC 59.133 47.619 3.57 0.00 0.00 4.61
800 1130 1.122227 AAATGCTGCACAAACACCCT 58.878 45.000 3.57 0.00 0.00 4.34
802 1132 0.756442 ATGCTGCACAAACACCCTGT 60.756 50.000 3.57 0.00 0.00 4.00
803 1133 0.969917 TGCTGCACAAACACCCTGTT 60.970 50.000 0.00 0.00 43.41 3.16
804 1134 1.028905 GCTGCACAAACACCCTGTTA 58.971 50.000 0.00 0.00 40.14 2.41
811 1179 4.438744 GCACAAACACCCTGTTATAGCATC 60.439 45.833 0.00 0.00 40.14 3.91
847 1215 0.737219 GCATGATGTGGCTTCAGACC 59.263 55.000 0.00 0.00 0.00 3.85
865 1233 6.639563 TCAGACCCTTTTCCTTTTCTTTTTG 58.360 36.000 0.00 0.00 0.00 2.44
866 1234 6.439058 TCAGACCCTTTTCCTTTTCTTTTTGA 59.561 34.615 0.00 0.00 0.00 2.69
874 1242 9.513727 CTTTTCCTTTTCTTTTTGAGAGAAGAG 57.486 33.333 7.62 1.52 45.08 2.85
885 1253 7.907214 TTTTGAGAGAAGAGCAGTTATAACC 57.093 36.000 12.05 0.00 0.00 2.85
893 1261 5.717119 AGAGCAGTTATAACCCCTGAATT 57.283 39.130 12.05 0.00 0.00 2.17
894 1262 6.824958 AGAGCAGTTATAACCCCTGAATTA 57.175 37.500 12.05 0.00 0.00 1.40
895 1263 7.208064 AGAGCAGTTATAACCCCTGAATTAA 57.792 36.000 12.05 0.00 0.00 1.40
916 1284 9.913451 AATTAATGTTTTTGTTTGTGATGAACG 57.087 25.926 0.00 0.00 0.00 3.95
917 1285 6.959671 AATGTTTTTGTTTGTGATGAACGT 57.040 29.167 0.00 0.00 0.00 3.99
921 1289 6.129062 TGTTTTTGTTTGTGATGAACGTTGTC 60.129 34.615 5.00 4.28 0.00 3.18
928 1296 8.779303 TGTTTGTGATGAACGTTGTCTATATTT 58.221 29.630 5.00 0.00 0.00 1.40
1134 1514 3.507009 CCCTCCTCGACCGACGAC 61.507 72.222 0.00 0.00 46.45 4.34
1380 1760 1.076485 ACCTGATGCATTGCCTCCC 60.076 57.895 6.12 0.00 0.00 4.30
1424 1804 4.767255 CCCGCCTCCTGCAGACAC 62.767 72.222 17.39 0.25 41.33 3.67
1458 1838 2.282462 CCTGATAATGCCCCGCCC 60.282 66.667 0.00 0.00 0.00 6.13
1551 1931 1.227999 CGCCTTCTTCCAAAGCGTCA 61.228 55.000 0.00 0.00 0.00 4.35
1689 2069 4.385405 GCGCACTCACCTCCTGCT 62.385 66.667 0.30 0.00 0.00 4.24
1815 2195 1.513158 CGTGATCGCCTTCCTCTGT 59.487 57.895 0.00 0.00 0.00 3.41
1848 2228 2.258591 GTCTGCCTGACGAAGCGA 59.741 61.111 0.00 0.00 35.81 4.93
2031 2411 1.735360 GAACCAACAGCAGCAGCAA 59.265 52.632 3.17 0.00 45.49 3.91
2516 2909 1.888512 CCACCACCTCCATTTCACTTG 59.111 52.381 0.00 0.00 0.00 3.16
2519 2912 2.375174 ACCACCTCCATTTCACTTGCTA 59.625 45.455 0.00 0.00 0.00 3.49
2555 2948 4.722700 GCCATGGCTCACCGGTGT 62.723 66.667 32.74 11.90 39.70 4.16
2588 2981 2.285668 CTTGCAGGGAGGGGGAGA 60.286 66.667 0.00 0.00 0.00 3.71
2672 3070 3.055094 ACCTGCACGAGGATTGTAAGATT 60.055 43.478 0.00 0.00 46.33 2.40
2680 3078 4.516698 CGAGGATTGTAAGATTTGGATGGG 59.483 45.833 0.00 0.00 0.00 4.00
2681 3079 5.687441 CGAGGATTGTAAGATTTGGATGGGA 60.687 44.000 0.00 0.00 0.00 4.37
2719 3119 3.406728 TCTGCGTCTATTCGTTCTGAG 57.593 47.619 0.00 0.00 0.00 3.35
2750 3150 5.922544 GCTGATTTTGTATGCTCTTTTGTGT 59.077 36.000 0.00 0.00 0.00 3.72
2806 3297 4.927049 ACATCAAGTCATCCAACATCCTT 58.073 39.130 0.00 0.00 0.00 3.36
2812 3303 3.118956 AGTCATCCAACATCCTTCTCGAC 60.119 47.826 0.00 0.00 0.00 4.20
2838 3361 0.392706 TTCGAAGCTCAGGTTCTGCA 59.607 50.000 14.56 0.00 37.82 4.41
2861 3384 6.403636 GCACTTTCTGAATAAATGGATGTCGT 60.404 38.462 0.00 0.00 0.00 4.34
2863 3386 7.482743 CACTTTCTGAATAAATGGATGTCGTTG 59.517 37.037 0.00 0.00 0.00 4.10
2867 3390 5.172205 TGAATAAATGGATGTCGTTGTCGA 58.828 37.500 0.00 0.00 44.12 4.20
3025 3549 7.428826 GGGTAAATAAATCATCTTTGCAGGAG 58.571 38.462 0.00 0.00 0.00 3.69
3063 3587 5.844396 CACGTCGACAGAAAATTAGGAAAAC 59.156 40.000 17.16 0.00 0.00 2.43
3078 3602 9.533253 AATTAGGAAAACTTGTCAAAATCTGTG 57.467 29.630 0.00 0.00 0.00 3.66
3079 3603 6.530019 AGGAAAACTTGTCAAAATCTGTGT 57.470 33.333 0.00 0.00 0.00 3.72
3082 3606 7.331687 AGGAAAACTTGTCAAAATCTGTGTTTG 59.668 33.333 0.00 0.00 37.32 2.93
3083 3607 7.117667 GGAAAACTTGTCAAAATCTGTGTTTGT 59.882 33.333 0.00 0.00 37.28 2.83
3084 3608 6.949578 AACTTGTCAAAATCTGTGTTTGTG 57.050 33.333 0.00 0.00 37.28 3.33
3085 3609 4.864247 ACTTGTCAAAATCTGTGTTTGTGC 59.136 37.500 0.00 0.00 37.28 4.57
3096 3620 1.064060 GTGTTTGTGCTGTGGTGACTC 59.936 52.381 0.00 0.00 0.00 3.36
3183 3707 4.373116 TCCTTCGGCGTGGTGCTC 62.373 66.667 17.69 0.00 45.43 4.26
3273 3797 2.235402 GTGGGTAAGAAAGATCACCGGA 59.765 50.000 9.46 0.00 31.47 5.14
3282 3806 1.219124 GATCACCGGAAGCAGCAGA 59.781 57.895 9.46 0.00 0.00 4.26
3285 3809 2.357517 ACCGGAAGCAGCAGAACG 60.358 61.111 9.46 0.00 0.00 3.95
3289 3817 2.684843 GGAAGCAGCAGAACGGCAG 61.685 63.158 0.00 0.00 42.62 4.85
3291 3819 0.670546 GAAGCAGCAGAACGGCAGTA 60.671 55.000 0.00 0.00 42.62 2.74
3301 3829 2.004733 GAACGGCAGTACAATACCACC 58.995 52.381 0.00 0.00 0.00 4.61
3318 3846 1.068125 CACCGTATCCGTCACTGACAA 60.068 52.381 9.84 0.00 32.09 3.18
3329 3857 0.877649 CACTGACAACGTGCTGCTCT 60.878 55.000 0.00 0.00 0.00 4.09
3333 3861 1.502163 GACAACGTGCTGCTCTTGCT 61.502 55.000 0.00 0.00 40.48 3.91
3334 3862 1.206072 CAACGTGCTGCTCTTGCTC 59.794 57.895 0.00 0.00 40.48 4.26
3538 4094 2.166664 AGGAAGAAGAACCTTCGATCGG 59.833 50.000 16.41 1.30 42.53 4.18
3539 4095 2.165845 GGAAGAAGAACCTTCGATCGGA 59.834 50.000 16.41 5.34 42.53 4.55
3736 4293 2.731691 TTCGGCAGCCAGGAGTTCAC 62.732 60.000 13.30 0.00 0.00 3.18
3750 4307 0.450983 GTTCACCTCCTCCGAGTACG 59.549 60.000 0.00 0.00 33.93 3.67
3799 4356 1.227380 GGGATCTGTAGCCACGCAG 60.227 63.158 0.00 0.00 30.46 5.18
3800 4357 1.676678 GGGATCTGTAGCCACGCAGA 61.677 60.000 0.00 0.00 44.55 4.26
3803 4360 2.555199 GATCTGTAGCCACGCAGAAAT 58.445 47.619 0.00 0.00 43.79 2.17
3804 4361 2.472695 TCTGTAGCCACGCAGAAATT 57.527 45.000 0.00 0.00 38.61 1.82
3805 4362 2.076100 TCTGTAGCCACGCAGAAATTG 58.924 47.619 0.00 0.00 38.61 2.32
3851 4410 4.846137 CGACGATTTTGTTTCTGTTCATCC 59.154 41.667 0.00 0.00 0.00 3.51
3852 4411 4.783242 ACGATTTTGTTTCTGTTCATCCG 58.217 39.130 0.00 0.00 0.00 4.18
3863 4422 5.862924 TCTGTTCATCCGTTGATTCTTTC 57.137 39.130 0.00 0.00 33.34 2.62
3865 4424 5.409520 TCTGTTCATCCGTTGATTCTTTCTG 59.590 40.000 0.00 0.00 33.34 3.02
3901 4904 8.962679 AGTGAATTTTTGTTTGGTGTCTTACTA 58.037 29.630 0.00 0.00 0.00 1.82
3915 4918 6.183360 GGTGTCTTACTATATGTGTGTGCCTA 60.183 42.308 0.00 0.00 0.00 3.93
3931 4934 6.538381 TGTGTGCCTATGATGTGTACATTAAG 59.462 38.462 0.00 0.00 36.57 1.85
4004 5012 3.342377 TGGTTTTGTCATATGCTCCGA 57.658 42.857 0.00 0.00 0.00 4.55
4020 5028 4.282703 TGCTCCGAAACTAAGAACTAAGGT 59.717 41.667 0.00 0.00 0.00 3.50
4021 5029 4.863689 GCTCCGAAACTAAGAACTAAGGTC 59.136 45.833 0.00 0.00 0.00 3.85
4022 5030 5.336610 GCTCCGAAACTAAGAACTAAGGTCT 60.337 44.000 0.00 0.00 0.00 3.85
4023 5031 6.022163 TCCGAAACTAAGAACTAAGGTCTG 57.978 41.667 0.00 0.00 0.00 3.51
4024 5032 5.047519 TCCGAAACTAAGAACTAAGGTCTGG 60.048 44.000 0.00 0.00 0.00 3.86
4025 5033 5.279356 CCGAAACTAAGAACTAAGGTCTGGT 60.279 44.000 0.00 0.00 0.00 4.00
4026 5034 6.071728 CCGAAACTAAGAACTAAGGTCTGGTA 60.072 42.308 0.00 0.00 0.00 3.25
4027 5035 6.805760 CGAAACTAAGAACTAAGGTCTGGTAC 59.194 42.308 0.00 0.00 0.00 3.34
4028 5036 7.522725 CGAAACTAAGAACTAAGGTCTGGTACA 60.523 40.741 0.00 0.00 0.00 2.90
4029 5037 7.607615 AACTAAGAACTAAGGTCTGGTACAA 57.392 36.000 0.00 0.00 38.70 2.41
4030 5038 7.793948 ACTAAGAACTAAGGTCTGGTACAAT 57.206 36.000 0.00 0.00 38.70 2.71
4031 5039 7.612677 ACTAAGAACTAAGGTCTGGTACAATG 58.387 38.462 0.00 0.00 38.70 2.82
4032 5040 4.833390 AGAACTAAGGTCTGGTACAATGC 58.167 43.478 0.00 0.00 38.70 3.56
4033 5041 4.286032 AGAACTAAGGTCTGGTACAATGCA 59.714 41.667 0.00 0.00 38.70 3.96
4034 5042 4.634012 ACTAAGGTCTGGTACAATGCAA 57.366 40.909 0.00 0.00 38.70 4.08
4035 5043 4.579869 ACTAAGGTCTGGTACAATGCAAG 58.420 43.478 0.00 0.00 38.70 4.01
4036 5044 2.496899 AGGTCTGGTACAATGCAAGG 57.503 50.000 0.00 0.00 38.70 3.61
4037 5045 1.705186 AGGTCTGGTACAATGCAAGGT 59.295 47.619 0.00 0.00 38.70 3.50
4038 5046 1.812571 GGTCTGGTACAATGCAAGGTG 59.187 52.381 0.00 0.00 38.70 4.00
4039 5047 1.200020 GTCTGGTACAATGCAAGGTGC 59.800 52.381 0.00 0.00 41.01 5.01
4040 5048 1.073763 TCTGGTACAATGCAAGGTGCT 59.926 47.619 8.61 0.00 41.18 4.40
4041 5049 1.888512 CTGGTACAATGCAAGGTGCTT 59.111 47.619 8.61 0.00 41.18 3.91
4042 5050 3.081061 CTGGTACAATGCAAGGTGCTTA 58.919 45.455 8.61 0.17 41.18 3.09
4043 5051 3.081061 TGGTACAATGCAAGGTGCTTAG 58.919 45.455 8.61 0.00 39.28 2.18
4044 5052 3.244735 TGGTACAATGCAAGGTGCTTAGA 60.245 43.478 8.61 0.00 39.28 2.10
4045 5053 3.375299 GGTACAATGCAAGGTGCTTAGAG 59.625 47.826 8.61 0.00 45.31 2.43
4046 5054 2.440409 ACAATGCAAGGTGCTTAGAGG 58.560 47.619 0.00 0.00 45.31 3.69
4047 5055 2.224867 ACAATGCAAGGTGCTTAGAGGT 60.225 45.455 0.00 0.00 45.31 3.85
4048 5056 2.119801 ATGCAAGGTGCTTAGAGGTG 57.880 50.000 0.00 0.00 45.31 4.00
4049 5057 0.036732 TGCAAGGTGCTTAGAGGTGG 59.963 55.000 1.43 0.00 45.31 4.61
4050 5058 1.308783 GCAAGGTGCTTAGAGGTGGC 61.309 60.000 0.00 0.00 40.96 5.01
4051 5059 1.021390 CAAGGTGCTTAGAGGTGGCG 61.021 60.000 0.00 0.00 0.00 5.69
4052 5060 2.804828 AAGGTGCTTAGAGGTGGCGC 62.805 60.000 0.00 0.00 35.98 6.53
4053 5061 2.266055 GTGCTTAGAGGTGGCGCT 59.734 61.111 7.64 0.00 34.21 5.92
4054 5062 1.376037 GTGCTTAGAGGTGGCGCTT 60.376 57.895 7.64 0.00 34.21 4.68
4055 5063 0.108329 GTGCTTAGAGGTGGCGCTTA 60.108 55.000 7.64 0.00 34.21 3.09
4056 5064 0.175760 TGCTTAGAGGTGGCGCTTAG 59.824 55.000 7.64 0.00 0.00 2.18
4057 5065 0.460311 GCTTAGAGGTGGCGCTTAGA 59.540 55.000 7.64 0.00 0.00 2.10
4058 5066 1.069358 GCTTAGAGGTGGCGCTTAGAT 59.931 52.381 7.64 0.00 0.00 1.98
4059 5067 2.296471 GCTTAGAGGTGGCGCTTAGATA 59.704 50.000 7.64 0.00 0.00 1.98
4060 5068 3.243771 GCTTAGAGGTGGCGCTTAGATAA 60.244 47.826 7.64 0.00 0.00 1.75
4061 5069 4.739735 GCTTAGAGGTGGCGCTTAGATAAA 60.740 45.833 7.64 0.00 0.00 1.40
4062 5070 3.180891 AGAGGTGGCGCTTAGATAAAC 57.819 47.619 7.64 0.00 0.00 2.01
4063 5071 2.766828 AGAGGTGGCGCTTAGATAAACT 59.233 45.455 7.64 0.00 0.00 2.66
4064 5072 2.866762 GAGGTGGCGCTTAGATAAACTG 59.133 50.000 7.64 0.00 0.00 3.16
4065 5073 1.940613 GGTGGCGCTTAGATAAACTGG 59.059 52.381 7.64 0.00 0.00 4.00
4066 5074 2.629051 GTGGCGCTTAGATAAACTGGT 58.371 47.619 7.64 0.00 0.00 4.00
4067 5075 3.007635 GTGGCGCTTAGATAAACTGGTT 58.992 45.455 7.64 0.00 0.00 3.67
4068 5076 3.439129 GTGGCGCTTAGATAAACTGGTTT 59.561 43.478 7.64 4.15 36.63 3.27
4069 5077 4.076394 TGGCGCTTAGATAAACTGGTTTT 58.924 39.130 7.64 0.00 34.23 2.43
4070 5078 4.521256 TGGCGCTTAGATAAACTGGTTTTT 59.479 37.500 7.64 0.00 34.23 1.94
4101 5109 5.482908 CACCAGTGCTTATTTGTAGAGAGT 58.517 41.667 0.00 0.00 0.00 3.24
4102 5110 6.631016 CACCAGTGCTTATTTGTAGAGAGTA 58.369 40.000 0.00 0.00 0.00 2.59
4103 5111 6.754209 CACCAGTGCTTATTTGTAGAGAGTAG 59.246 42.308 0.00 0.00 0.00 2.57
4104 5112 6.663953 ACCAGTGCTTATTTGTAGAGAGTAGA 59.336 38.462 0.00 0.00 0.00 2.59
4105 5113 6.975772 CCAGTGCTTATTTGTAGAGAGTAGAC 59.024 42.308 0.00 0.00 0.00 2.59
4106 5114 6.689241 CAGTGCTTATTTGTAGAGAGTAGACG 59.311 42.308 0.00 0.00 0.00 4.18
4107 5115 6.374894 AGTGCTTATTTGTAGAGAGTAGACGT 59.625 38.462 0.00 0.00 0.00 4.34
4108 5116 6.469595 GTGCTTATTTGTAGAGAGTAGACGTG 59.530 42.308 0.00 0.00 0.00 4.49
4109 5117 6.150641 TGCTTATTTGTAGAGAGTAGACGTGT 59.849 38.462 0.00 0.00 0.00 4.49
4110 5118 7.335171 TGCTTATTTGTAGAGAGTAGACGTGTA 59.665 37.037 0.00 0.00 0.00 2.90
4111 5119 8.180267 GCTTATTTGTAGAGAGTAGACGTGTAA 58.820 37.037 0.00 0.00 0.00 2.41
4116 5124 7.783090 TGTAGAGAGTAGACGTGTAATTAGG 57.217 40.000 0.00 0.00 0.00 2.69
4117 5125 5.754543 AGAGAGTAGACGTGTAATTAGGC 57.245 43.478 0.00 0.00 0.00 3.93
4118 5126 5.191426 AGAGAGTAGACGTGTAATTAGGCA 58.809 41.667 0.00 0.00 0.00 4.75
4119 5127 5.066246 AGAGAGTAGACGTGTAATTAGGCAC 59.934 44.000 0.00 0.00 0.00 5.01
4120 5128 4.097589 AGAGTAGACGTGTAATTAGGCACC 59.902 45.833 0.00 0.00 32.40 5.01
4121 5129 2.685850 AGACGTGTAATTAGGCACCC 57.314 50.000 0.00 0.00 32.40 4.61
4122 5130 1.208776 AGACGTGTAATTAGGCACCCC 59.791 52.381 0.00 0.00 32.40 4.95
4123 5131 1.208776 GACGTGTAATTAGGCACCCCT 59.791 52.381 0.00 0.00 45.61 4.79
4124 5132 1.208776 ACGTGTAATTAGGCACCCCTC 59.791 52.381 0.00 0.00 41.75 4.30
4125 5133 1.474498 CGTGTAATTAGGCACCCCTCC 60.474 57.143 1.75 0.00 41.75 4.30
4126 5134 1.844497 GTGTAATTAGGCACCCCTCCT 59.156 52.381 0.00 0.00 41.75 3.69
4127 5135 3.043418 GTGTAATTAGGCACCCCTCCTA 58.957 50.000 0.00 0.00 41.75 2.94
4128 5136 3.043418 TGTAATTAGGCACCCCTCCTAC 58.957 50.000 0.00 0.00 41.75 3.18
4129 5137 2.280308 AATTAGGCACCCCTCCTACA 57.720 50.000 0.00 0.00 41.75 2.74
4130 5138 2.280308 ATTAGGCACCCCTCCTACAA 57.720 50.000 0.00 0.00 41.75 2.41
4131 5139 2.047769 TTAGGCACCCCTCCTACAAA 57.952 50.000 0.00 0.00 41.75 2.83
4132 5140 1.580059 TAGGCACCCCTCCTACAAAG 58.420 55.000 0.00 0.00 41.75 2.77
4133 5141 1.378646 GGCACCCCTCCTACAAAGC 60.379 63.158 0.00 0.00 0.00 3.51
4134 5142 1.378646 GCACCCCTCCTACAAAGCC 60.379 63.158 0.00 0.00 0.00 4.35
4135 5143 2.074967 CACCCCTCCTACAAAGCCA 58.925 57.895 0.00 0.00 0.00 4.75
4136 5144 0.404040 CACCCCTCCTACAAAGCCAA 59.596 55.000 0.00 0.00 0.00 4.52
4137 5145 0.698818 ACCCCTCCTACAAAGCCAAG 59.301 55.000 0.00 0.00 0.00 3.61
4138 5146 0.681243 CCCCTCCTACAAAGCCAAGC 60.681 60.000 0.00 0.00 0.00 4.01
4139 5147 0.038166 CCCTCCTACAAAGCCAAGCA 59.962 55.000 0.00 0.00 0.00 3.91
4140 5148 1.168714 CCTCCTACAAAGCCAAGCAC 58.831 55.000 0.00 0.00 0.00 4.40
4141 5149 1.271597 CCTCCTACAAAGCCAAGCACT 60.272 52.381 0.00 0.00 0.00 4.40
4142 5150 1.808945 CTCCTACAAAGCCAAGCACTG 59.191 52.381 0.00 0.00 0.00 3.66
4157 5165 1.871080 CACTGGTGCTCGAGAAAAGT 58.129 50.000 18.75 10.49 0.00 2.66
4158 5166 2.213499 CACTGGTGCTCGAGAAAAGTT 58.787 47.619 18.75 0.00 0.00 2.66
4159 5167 2.614057 CACTGGTGCTCGAGAAAAGTTT 59.386 45.455 18.75 0.00 0.00 2.66
4160 5168 2.614057 ACTGGTGCTCGAGAAAAGTTTG 59.386 45.455 18.75 0.24 0.00 2.93
4161 5169 1.946768 TGGTGCTCGAGAAAAGTTTGG 59.053 47.619 18.75 0.00 0.00 3.28
4162 5170 1.335051 GGTGCTCGAGAAAAGTTTGGC 60.335 52.381 18.75 0.00 0.00 4.52
4163 5171 1.604278 GTGCTCGAGAAAAGTTTGGCT 59.396 47.619 18.75 0.00 0.00 4.75
4164 5172 2.033424 GTGCTCGAGAAAAGTTTGGCTT 59.967 45.455 18.75 0.00 39.52 4.35
4165 5173 3.250040 GTGCTCGAGAAAAGTTTGGCTTA 59.750 43.478 18.75 0.00 36.17 3.09
4166 5174 4.072131 TGCTCGAGAAAAGTTTGGCTTAT 58.928 39.130 18.75 0.00 36.17 1.73
4167 5175 4.154195 TGCTCGAGAAAAGTTTGGCTTATC 59.846 41.667 18.75 0.00 36.17 1.75
4168 5176 4.393371 GCTCGAGAAAAGTTTGGCTTATCT 59.607 41.667 18.75 0.00 36.17 1.98
4169 5177 5.106515 GCTCGAGAAAAGTTTGGCTTATCTT 60.107 40.000 18.75 0.00 36.17 2.40
4170 5178 6.092259 GCTCGAGAAAAGTTTGGCTTATCTTA 59.908 38.462 18.75 0.00 36.17 2.10
4171 5179 7.360575 TCGAGAAAAGTTTGGCTTATCTTAC 57.639 36.000 0.00 0.00 36.17 2.34
4172 5180 7.159372 TCGAGAAAAGTTTGGCTTATCTTACT 58.841 34.615 0.00 0.00 36.17 2.24
4173 5181 8.308931 TCGAGAAAAGTTTGGCTTATCTTACTA 58.691 33.333 0.00 0.00 36.17 1.82
4174 5182 8.932791 CGAGAAAAGTTTGGCTTATCTTACTAA 58.067 33.333 0.00 0.00 36.17 2.24
4176 5184 9.794719 AGAAAAGTTTGGCTTATCTTACTAAGT 57.205 29.630 0.00 0.00 36.17 2.24
4179 5187 9.445878 AAAGTTTGGCTTATCTTACTAAGTACC 57.554 33.333 0.00 0.00 36.17 3.34
4180 5188 8.376803 AGTTTGGCTTATCTTACTAAGTACCT 57.623 34.615 0.00 0.00 32.39 3.08
4181 5189 8.476447 AGTTTGGCTTATCTTACTAAGTACCTC 58.524 37.037 0.00 0.00 32.39 3.85
4182 5190 6.973460 TGGCTTATCTTACTAAGTACCTCC 57.027 41.667 0.00 0.00 32.39 4.30
4183 5191 6.680540 TGGCTTATCTTACTAAGTACCTCCT 58.319 40.000 0.00 0.00 32.39 3.69
4184 5192 6.776603 TGGCTTATCTTACTAAGTACCTCCTC 59.223 42.308 0.00 0.00 32.39 3.71
4185 5193 7.005902 GGCTTATCTTACTAAGTACCTCCTCT 58.994 42.308 0.00 0.00 32.39 3.69
4186 5194 8.162746 GGCTTATCTTACTAAGTACCTCCTCTA 58.837 40.741 0.00 0.00 32.39 2.43
4187 5195 9.571816 GCTTATCTTACTAAGTACCTCCTCTAA 57.428 37.037 0.00 0.00 32.39 2.10
4189 5197 9.571816 TTATCTTACTAAGTACCTCCTCTAAGC 57.428 37.037 0.00 0.00 0.00 3.09
4190 5198 6.966751 TCTTACTAAGTACCTCCTCTAAGCA 58.033 40.000 0.00 0.00 0.00 3.91
4191 5199 6.827762 TCTTACTAAGTACCTCCTCTAAGCAC 59.172 42.308 0.00 0.00 0.00 4.40
4192 5200 4.279982 ACTAAGTACCTCCTCTAAGCACC 58.720 47.826 0.00 0.00 0.00 5.01
4193 5201 3.476485 AAGTACCTCCTCTAAGCACCT 57.524 47.619 0.00 0.00 0.00 4.00
4194 5202 3.476485 AGTACCTCCTCTAAGCACCTT 57.524 47.619 0.00 0.00 0.00 3.50
4195 5203 3.100671 AGTACCTCCTCTAAGCACCTTG 58.899 50.000 0.00 0.00 0.00 3.61
4196 5204 0.615850 ACCTCCTCTAAGCACCTTGC 59.384 55.000 0.00 0.00 45.46 4.01
4207 5215 2.524569 GCACCTTGCAGGCTTAAAAA 57.475 45.000 2.50 0.00 44.26 1.94
4208 5216 2.407090 GCACCTTGCAGGCTTAAAAAG 58.593 47.619 2.50 0.00 44.26 2.27
4226 5234 8.641499 TTAAAAAGCAAAGTGTTGTGAATAGG 57.359 30.769 0.00 0.00 37.06 2.57
4227 5235 6.463995 AAAAGCAAAGTGTTGTGAATAGGA 57.536 33.333 0.00 0.00 37.06 2.94
4228 5236 6.655078 AAAGCAAAGTGTTGTGAATAGGAT 57.345 33.333 0.00 0.00 37.06 3.24
4229 5237 7.759489 AAAGCAAAGTGTTGTGAATAGGATA 57.241 32.000 0.00 0.00 37.06 2.59
4230 5238 6.992063 AGCAAAGTGTTGTGAATAGGATAG 57.008 37.500 0.00 0.00 37.06 2.08
4231 5239 5.882557 AGCAAAGTGTTGTGAATAGGATAGG 59.117 40.000 0.00 0.00 37.06 2.57
4232 5240 5.066505 GCAAAGTGTTGTGAATAGGATAGGG 59.933 44.000 0.00 0.00 37.06 3.53
4233 5241 6.180472 CAAAGTGTTGTGAATAGGATAGGGT 58.820 40.000 0.00 0.00 0.00 4.34
4234 5242 5.615925 AGTGTTGTGAATAGGATAGGGTC 57.384 43.478 0.00 0.00 0.00 4.46
4235 5243 5.281314 AGTGTTGTGAATAGGATAGGGTCT 58.719 41.667 0.00 0.00 0.00 3.85
4236 5244 5.726793 AGTGTTGTGAATAGGATAGGGTCTT 59.273 40.000 0.00 0.00 0.00 3.01
4237 5245 5.817816 GTGTTGTGAATAGGATAGGGTCTTG 59.182 44.000 0.00 0.00 0.00 3.02
4238 5246 5.487488 TGTTGTGAATAGGATAGGGTCTTGT 59.513 40.000 0.00 0.00 0.00 3.16
4239 5247 5.614324 TGTGAATAGGATAGGGTCTTGTG 57.386 43.478 0.00 0.00 0.00 3.33
4240 5248 5.277250 TGTGAATAGGATAGGGTCTTGTGA 58.723 41.667 0.00 0.00 0.00 3.58
4241 5249 5.724370 TGTGAATAGGATAGGGTCTTGTGAA 59.276 40.000 0.00 0.00 0.00 3.18
4242 5250 6.049790 GTGAATAGGATAGGGTCTTGTGAAC 58.950 44.000 0.00 0.00 0.00 3.18
4243 5251 5.724370 TGAATAGGATAGGGTCTTGTGAACA 59.276 40.000 0.00 0.00 0.00 3.18
4244 5252 3.983044 AGGATAGGGTCTTGTGAACAC 57.017 47.619 0.00 0.00 0.00 3.32
4245 5253 2.233922 AGGATAGGGTCTTGTGAACACG 59.766 50.000 0.57 0.00 0.00 4.49
4246 5254 2.232941 GGATAGGGTCTTGTGAACACGA 59.767 50.000 0.00 0.00 0.00 4.35
4247 5255 3.306502 GGATAGGGTCTTGTGAACACGAA 60.307 47.826 0.00 0.00 0.00 3.85
4248 5256 2.702592 AGGGTCTTGTGAACACGAAA 57.297 45.000 0.00 0.00 0.00 3.46
4249 5257 2.561569 AGGGTCTTGTGAACACGAAAG 58.438 47.619 0.00 0.57 0.00 2.62
4262 5270 2.270275 ACGAAAGTGATGAGCTCGAG 57.730 50.000 8.45 8.45 46.97 4.04
4263 5271 0.919981 CGAAAGTGATGAGCTCGAGC 59.080 55.000 30.01 30.01 42.49 5.03
4293 5301 5.649831 GGAGCTTGGATGAACAGTAAATTCT 59.350 40.000 0.00 0.00 0.00 2.40
4295 5303 5.098211 GCTTGGATGAACAGTAAATTCTGC 58.902 41.667 0.00 0.00 38.84 4.26
4327 5335 5.796424 ACTCCCTTCGAAAGTTGTACTAA 57.204 39.130 0.00 0.00 0.00 2.24
4330 5338 4.992951 TCCCTTCGAAAGTTGTACTAAAGC 59.007 41.667 0.00 0.00 0.00 3.51
4333 5341 4.985044 TCGAAAGTTGTACTAAAGCTGC 57.015 40.909 0.00 0.00 0.00 5.25
4336 5344 4.091509 CGAAAGTTGTACTAAAGCTGCGAT 59.908 41.667 0.00 0.00 0.00 4.58
4451 5461 7.479897 TTTCACAATGAAATCACATTTGTGG 57.520 32.000 20.03 8.68 41.02 4.17
4563 5578 5.784750 TCTGAAAATCTGAACGCATGTAG 57.215 39.130 0.00 0.00 0.00 2.74
4566 5581 6.091305 TCTGAAAATCTGAACGCATGTAGAAG 59.909 38.462 0.00 0.00 0.00 2.85
4588 5603 1.927487 ACATCAATGCTTCTTGCCCA 58.073 45.000 0.00 0.00 42.00 5.36
4589 5604 2.250031 ACATCAATGCTTCTTGCCCAA 58.750 42.857 0.00 0.00 42.00 4.12
4593 5608 3.465871 TCAATGCTTCTTGCCCAAAAAC 58.534 40.909 0.00 0.00 42.00 2.43
4594 5609 3.134442 TCAATGCTTCTTGCCCAAAAACT 59.866 39.130 0.00 0.00 42.00 2.66
4597 5612 2.101249 TGCTTCTTGCCCAAAAACTGAG 59.899 45.455 0.00 0.00 42.00 3.35
4638 5661 5.175859 TCTGGATTTTACTGTTCATCCGAC 58.824 41.667 7.62 0.00 38.49 4.79
4642 5665 2.933495 TTACTGTTCATCCGACCTCG 57.067 50.000 0.00 0.00 39.44 4.63
4643 5666 1.830279 TACTGTTCATCCGACCTCGT 58.170 50.000 0.00 0.00 37.74 4.18
4655 5678 0.729816 GACCTCGTGTGAGCTCGAAC 60.730 60.000 9.64 8.82 41.13 3.95
4656 5679 1.444553 CCTCGTGTGAGCTCGAACC 60.445 63.158 9.64 0.00 41.13 3.62
4659 5682 1.079819 CGTGTGAGCTCGAACCCAT 60.080 57.895 9.64 0.00 33.95 4.00
4660 5683 1.354337 CGTGTGAGCTCGAACCCATG 61.354 60.000 9.64 2.51 33.95 3.66
4661 5684 0.320771 GTGTGAGCTCGAACCCATGT 60.321 55.000 9.64 0.00 0.00 3.21
4696 5719 6.044046 TCCGTGAATATTATTGTTGTACGCT 58.956 36.000 0.00 0.00 0.00 5.07
4749 5772 6.946009 TCACTAAATTCTTAAAAGTGGAGGGG 59.054 38.462 0.00 0.00 38.44 4.79
4751 5774 2.597578 TTCTTAAAAGTGGAGGGGGC 57.402 50.000 0.00 0.00 0.00 5.80
4753 5776 0.407918 CTTAAAAGTGGAGGGGGCCA 59.592 55.000 4.39 0.00 35.02 5.36
4754 5777 0.861155 TTAAAAGTGGAGGGGGCCAA 59.139 50.000 4.39 0.00 40.20 4.52
4770 5793 3.189285 GGCCAATGAAATGGAATCAACG 58.811 45.455 0.00 0.00 43.54 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.833630 TCTCTGGAATGGAATCGCTGT 59.166 47.619 0.00 0.00 0.00 4.40
1 2 2.158986 ACTCTCTGGAATGGAATCGCTG 60.159 50.000 0.00 0.00 0.00 5.18
2 3 2.102252 GACTCTCTGGAATGGAATCGCT 59.898 50.000 0.00 0.00 0.00 4.93
3 4 2.478831 GACTCTCTGGAATGGAATCGC 58.521 52.381 0.00 0.00 0.00 4.58
4 5 2.099921 ACGACTCTCTGGAATGGAATCG 59.900 50.000 0.00 0.00 0.00 3.34
5 6 3.712187 GACGACTCTCTGGAATGGAATC 58.288 50.000 0.00 0.00 0.00 2.52
6 7 2.099921 CGACGACTCTCTGGAATGGAAT 59.900 50.000 0.00 0.00 0.00 3.01
7 8 1.472878 CGACGACTCTCTGGAATGGAA 59.527 52.381 0.00 0.00 0.00 3.53
8 9 1.095600 CGACGACTCTCTGGAATGGA 58.904 55.000 0.00 0.00 0.00 3.41
9 10 0.526524 GCGACGACTCTCTGGAATGG 60.527 60.000 0.00 0.00 0.00 3.16
10 11 0.453793 AGCGACGACTCTCTGGAATG 59.546 55.000 0.00 0.00 0.00 2.67
16 17 2.673341 TGGCAGCGACGACTCTCT 60.673 61.111 0.00 0.00 0.00 3.10
53 54 1.197721 CCTTTGATCGTCGCTTTTGCT 59.802 47.619 0.00 0.00 44.80 3.91
61 62 1.103803 TCTCCCTCCTTTGATCGTCG 58.896 55.000 0.00 0.00 0.00 5.12
62 63 1.825474 TGTCTCCCTCCTTTGATCGTC 59.175 52.381 0.00 0.00 0.00 4.20
64 65 2.103373 TCTGTCTCCCTCCTTTGATCG 58.897 52.381 0.00 0.00 0.00 3.69
66 67 1.827969 CGTCTGTCTCCCTCCTTTGAT 59.172 52.381 0.00 0.00 0.00 2.57
67 68 1.257743 CGTCTGTCTCCCTCCTTTGA 58.742 55.000 0.00 0.00 0.00 2.69
68 69 0.247736 CCGTCTGTCTCCCTCCTTTG 59.752 60.000 0.00 0.00 0.00 2.77
69 70 1.545706 GCCGTCTGTCTCCCTCCTTT 61.546 60.000 0.00 0.00 0.00 3.11
70 71 1.985116 GCCGTCTGTCTCCCTCCTT 60.985 63.158 0.00 0.00 0.00 3.36
72 73 1.617947 ATTGCCGTCTGTCTCCCTCC 61.618 60.000 0.00 0.00 0.00 4.30
74 75 1.194781 ACATTGCCGTCTGTCTCCCT 61.195 55.000 0.00 0.00 0.00 4.20
76 77 0.320771 ACACATTGCCGTCTGTCTCC 60.321 55.000 0.00 0.00 0.00 3.71
80 81 3.343972 GCACACATTGCCGTCTGT 58.656 55.556 0.00 0.00 46.63 3.41
88 89 2.169937 AAATGGCGGGGCACACATTG 62.170 55.000 7.34 0.00 34.12 2.82
89 90 1.887344 GAAATGGCGGGGCACACATT 61.887 55.000 0.00 1.22 35.24 2.71
94 95 0.460109 GAAATGAAATGGCGGGGCAC 60.460 55.000 0.00 0.00 0.00 5.01
134 157 0.528684 GGGATCGGCAAGAAGAGACG 60.529 60.000 0.00 0.00 0.00 4.18
135 158 0.179070 GGGGATCGGCAAGAAGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
138 161 0.035439 GTTGGGGATCGGCAAGAAGA 60.035 55.000 0.00 0.00 0.00 2.87
140 163 1.376683 CGTTGGGGATCGGCAAGAA 60.377 57.895 0.00 0.00 0.00 2.52
142 165 3.508840 GCGTTGGGGATCGGCAAG 61.509 66.667 0.00 0.00 0.00 4.01
143 166 4.337177 TGCGTTGGGGATCGGCAA 62.337 61.111 0.00 0.00 0.00 4.52
146 169 4.776322 TGCTGCGTTGGGGATCGG 62.776 66.667 0.00 0.00 0.00 4.18
147 170 3.197790 CTGCTGCGTTGGGGATCG 61.198 66.667 0.00 0.00 0.00 3.69
148 171 3.512516 GCTGCTGCGTTGGGGATC 61.513 66.667 0.00 0.00 0.00 3.36
149 172 3.650298 ATGCTGCTGCGTTGGGGAT 62.650 57.895 11.21 0.00 43.34 3.85
150 173 4.349503 ATGCTGCTGCGTTGGGGA 62.350 61.111 11.21 0.00 43.34 4.81
151 174 4.124351 CATGCTGCTGCGTTGGGG 62.124 66.667 7.67 0.00 43.34 4.96
152 175 3.047718 CTCATGCTGCTGCGTTGGG 62.048 63.158 7.67 5.72 43.34 4.12
153 176 1.978712 CTCTCATGCTGCTGCGTTGG 61.979 60.000 7.67 4.24 43.34 3.77
154 177 1.424240 CTCTCATGCTGCTGCGTTG 59.576 57.895 7.67 9.51 43.34 4.10
155 178 2.396955 GCTCTCATGCTGCTGCGTT 61.397 57.895 7.67 0.00 43.34 4.84
156 179 2.818714 GCTCTCATGCTGCTGCGT 60.819 61.111 11.21 7.87 43.34 5.24
157 180 2.511829 AGCTCTCATGCTGCTGCG 60.512 61.111 11.21 0.00 42.33 5.18
206 268 2.037121 TGAACCACGAATCAGAGCAAGA 59.963 45.455 0.00 0.00 0.00 3.02
218 280 4.308458 CCGCCACCTGAACCACGA 62.308 66.667 0.00 0.00 0.00 4.35
224 286 4.641645 CAGCCACCGCCACCTGAA 62.642 66.667 0.00 0.00 34.57 3.02
226 288 4.415150 ATCAGCCACCGCCACCTG 62.415 66.667 0.00 0.00 34.57 4.00
227 289 4.101448 GATCAGCCACCGCCACCT 62.101 66.667 0.00 0.00 34.57 4.00
229 291 2.045926 AAGATCAGCCACCGCCAC 60.046 61.111 0.00 0.00 34.57 5.01
230 292 1.841302 AAGAAGATCAGCCACCGCCA 61.841 55.000 0.00 0.00 34.57 5.69
231 293 1.078143 AAGAAGATCAGCCACCGCC 60.078 57.895 0.00 0.00 34.57 6.13
234 296 3.465871 GATCAGAAGAAGATCAGCCACC 58.534 50.000 0.00 0.00 41.16 4.61
235 297 3.465871 GGATCAGAAGAAGATCAGCCAC 58.534 50.000 0.00 0.00 42.84 5.01
237 299 2.437281 TGGGATCAGAAGAAGATCAGCC 59.563 50.000 0.00 0.00 42.84 4.85
238 300 3.834489 TGGGATCAGAAGAAGATCAGC 57.166 47.619 0.00 0.00 42.84 4.26
239 301 4.163839 ACCTTGGGATCAGAAGAAGATCAG 59.836 45.833 0.00 0.00 42.84 2.90
240 302 4.107072 ACCTTGGGATCAGAAGAAGATCA 58.893 43.478 0.00 0.00 42.84 2.92
241 303 4.769345 ACCTTGGGATCAGAAGAAGATC 57.231 45.455 0.00 0.00 40.86 2.75
242 304 4.100189 CGTACCTTGGGATCAGAAGAAGAT 59.900 45.833 0.00 0.00 0.00 2.40
243 305 3.447586 CGTACCTTGGGATCAGAAGAAGA 59.552 47.826 0.00 0.00 0.00 2.87
244 306 3.430929 CCGTACCTTGGGATCAGAAGAAG 60.431 52.174 0.00 0.00 0.00 2.85
245 307 2.500098 CCGTACCTTGGGATCAGAAGAA 59.500 50.000 0.00 0.00 0.00 2.52
246 308 2.108168 CCGTACCTTGGGATCAGAAGA 58.892 52.381 0.00 0.00 0.00 2.87
247 309 1.831736 ACCGTACCTTGGGATCAGAAG 59.168 52.381 0.00 0.00 0.00 2.85
250 312 0.464452 GGACCGTACCTTGGGATCAG 59.536 60.000 0.00 0.00 0.00 2.90
265 327 2.224281 TGATGATAGCAATCCACGGACC 60.224 50.000 0.00 0.00 0.00 4.46
276 338 6.325804 TGAGAAGGAAGAAGATGATGATAGCA 59.674 38.462 0.00 0.00 0.00 3.49
281 346 7.434927 AGAATGAGAAGGAAGAAGATGATGA 57.565 36.000 0.00 0.00 0.00 2.92
282 347 7.553402 ACAAGAATGAGAAGGAAGAAGATGATG 59.447 37.037 0.00 0.00 0.00 3.07
285 350 6.877855 TCACAAGAATGAGAAGGAAGAAGATG 59.122 38.462 0.00 0.00 0.00 2.90
303 368 3.055891 TCAAGAGCCATCGATTCACAAGA 60.056 43.478 0.00 0.00 0.00 3.02
305 370 3.264947 CTCAAGAGCCATCGATTCACAA 58.735 45.455 0.00 0.00 0.00 3.33
319 384 3.304391 GGCATCGTCTACTAGCTCAAGAG 60.304 52.174 0.00 0.00 0.00 2.85
333 435 9.424319 TCTAATATTCTTGAATTAGGCATCGTC 57.576 33.333 0.95 0.00 36.66 4.20
334 436 9.778741 TTCTAATATTCTTGAATTAGGCATCGT 57.221 29.630 0.95 0.00 36.66 3.73
351 453 6.782494 CCACCATAAAAGGGCCTTCTAATATT 59.218 38.462 21.20 11.51 0.00 1.28
358 460 2.231716 ACCACCATAAAAGGGCCTTC 57.768 50.000 21.20 0.00 0.00 3.46
361 463 2.375146 CACTACCACCATAAAAGGGCC 58.625 52.381 0.00 0.00 0.00 5.80
362 464 2.291346 ACCACTACCACCATAAAAGGGC 60.291 50.000 0.00 0.00 0.00 5.19
363 465 3.732048 ACCACTACCACCATAAAAGGG 57.268 47.619 0.00 0.00 0.00 3.95
364 466 8.990163 AATAATACCACTACCACCATAAAAGG 57.010 34.615 0.00 0.00 0.00 3.11
370 472 9.185680 GAAAAGAAATAATACCACTACCACCAT 57.814 33.333 0.00 0.00 0.00 3.55
371 473 7.612633 GGAAAAGAAATAATACCACTACCACCA 59.387 37.037 0.00 0.00 0.00 4.17
372 474 7.832685 AGGAAAAGAAATAATACCACTACCACC 59.167 37.037 0.00 0.00 0.00 4.61
373 475 8.674607 CAGGAAAAGAAATAATACCACTACCAC 58.325 37.037 0.00 0.00 0.00 4.16
375 477 7.284716 CCCAGGAAAAGAAATAATACCACTACC 59.715 40.741 0.00 0.00 0.00 3.18
376 478 7.284716 CCCCAGGAAAAGAAATAATACCACTAC 59.715 40.741 0.00 0.00 0.00 2.73
378 480 6.011096 TCCCCAGGAAAAGAAATAATACCACT 60.011 38.462 0.00 0.00 0.00 4.00
385 528 8.757877 CACAATAATCCCCAGGAAAAGAAATAA 58.242 33.333 0.00 0.00 34.34 1.40
409 552 7.803659 GCTAAAGAGAATACCAACAAAGAACAC 59.196 37.037 0.00 0.00 0.00 3.32
415 558 8.405531 GCATATGCTAAAGAGAATACCAACAAA 58.594 33.333 20.64 0.00 38.21 2.83
463 647 2.063266 GTTTGGTTCACAGCATGCATG 58.937 47.619 22.70 22.70 42.53 4.06
464 648 1.336148 CGTTTGGTTCACAGCATGCAT 60.336 47.619 21.98 4.26 42.53 3.96
465 649 0.030504 CGTTTGGTTCACAGCATGCA 59.969 50.000 21.98 0.00 42.53 3.96
466 650 0.664166 CCGTTTGGTTCACAGCATGC 60.664 55.000 10.51 10.51 42.53 4.06
467 651 0.950836 TCCGTTTGGTTCACAGCATG 59.049 50.000 0.00 0.00 38.38 4.06
468 652 1.608590 CTTCCGTTTGGTTCACAGCAT 59.391 47.619 0.00 0.00 36.30 3.79
469 653 1.021202 CTTCCGTTTGGTTCACAGCA 58.979 50.000 0.00 0.00 36.30 4.41
470 654 1.021968 ACTTCCGTTTGGTTCACAGC 58.978 50.000 0.00 0.00 36.30 4.40
471 655 3.488553 GGAAACTTCCGTTTGGTTCACAG 60.489 47.826 0.00 0.00 43.09 3.66
472 656 2.424246 GGAAACTTCCGTTTGGTTCACA 59.576 45.455 0.00 0.00 43.09 3.58
473 657 3.074504 GGAAACTTCCGTTTGGTTCAC 57.925 47.619 0.00 0.00 43.09 3.18
495 679 7.816513 GGTCGTTAAGAGAACCAACTAATTACT 59.183 37.037 0.00 0.00 0.00 2.24
520 707 2.393271 ACAAGATTCTTCCAGCTCGG 57.607 50.000 0.00 0.00 0.00 4.63
548 735 0.530431 GCTTGCAACAACCCAACTGG 60.530 55.000 0.00 0.00 41.37 4.00
550 737 1.956477 CTAGCTTGCAACAACCCAACT 59.044 47.619 0.00 0.00 0.00 3.16
551 738 1.602920 GCTAGCTTGCAACAACCCAAC 60.603 52.381 15.53 0.00 0.00 3.77
552 739 0.673437 GCTAGCTTGCAACAACCCAA 59.327 50.000 15.53 0.00 0.00 4.12
553 740 0.467106 TGCTAGCTTGCAACAACCCA 60.467 50.000 20.65 0.00 40.29 4.51
554 741 0.242017 CTGCTAGCTTGCAACAACCC 59.758 55.000 22.83 0.00 42.83 4.11
614 811 2.450160 CAAAACGGTTGACTTGAGTGC 58.550 47.619 0.00 0.00 0.00 4.40
617 814 4.568152 AATCCAAAACGGTTGACTTGAG 57.432 40.909 5.56 0.00 35.57 3.02
670 867 2.099756 GCTGGACAACTTAATCATGGGC 59.900 50.000 0.00 0.00 0.00 5.36
671 868 2.355756 CGCTGGACAACTTAATCATGGG 59.644 50.000 0.00 0.00 0.00 4.00
672 869 3.270027 TCGCTGGACAACTTAATCATGG 58.730 45.455 0.00 0.00 0.00 3.66
673 870 4.631377 TCTTCGCTGGACAACTTAATCATG 59.369 41.667 0.00 0.00 0.00 3.07
674 871 4.832248 TCTTCGCTGGACAACTTAATCAT 58.168 39.130 0.00 0.00 0.00 2.45
675 872 4.245660 CTCTTCGCTGGACAACTTAATCA 58.754 43.478 0.00 0.00 0.00 2.57
676 873 3.062774 GCTCTTCGCTGGACAACTTAATC 59.937 47.826 0.00 0.00 35.14 1.75
677 874 3.003480 GCTCTTCGCTGGACAACTTAAT 58.997 45.455 0.00 0.00 35.14 1.40
698 950 3.775661 AAAATCCCCGTTTAAGATGCG 57.224 42.857 0.00 0.00 0.00 4.73
699 951 4.862574 GTGAAAAATCCCCGTTTAAGATGC 59.137 41.667 0.00 0.00 0.00 3.91
710 962 3.953712 AAATGACGGTGAAAAATCCCC 57.046 42.857 0.00 0.00 0.00 4.81
716 968 9.043079 GGGTTAATTTTAAAATGACGGTGAAAA 57.957 29.630 14.04 0.00 0.00 2.29
717 969 8.422566 AGGGTTAATTTTAAAATGACGGTGAAA 58.577 29.630 14.04 0.00 0.00 2.69
718 970 7.953752 AGGGTTAATTTTAAAATGACGGTGAA 58.046 30.769 14.04 0.00 0.00 3.18
719 971 7.527568 AGGGTTAATTTTAAAATGACGGTGA 57.472 32.000 14.04 0.00 0.00 4.02
720 972 7.359681 GCAAGGGTTAATTTTAAAATGACGGTG 60.360 37.037 14.04 13.36 0.00 4.94
721 973 6.647481 GCAAGGGTTAATTTTAAAATGACGGT 59.353 34.615 14.04 1.13 0.00 4.83
722 974 6.871492 AGCAAGGGTTAATTTTAAAATGACGG 59.129 34.615 14.04 7.96 0.00 4.79
724 976 8.601845 ACAGCAAGGGTTAATTTTAAAATGAC 57.398 30.769 14.04 14.44 0.00 3.06
733 985 8.811994 ACACATAATTACAGCAAGGGTTAATTT 58.188 29.630 0.00 0.00 0.00 1.82
734 986 8.361169 ACACATAATTACAGCAAGGGTTAATT 57.639 30.769 0.00 0.00 0.00 1.40
735 987 7.834181 AGACACATAATTACAGCAAGGGTTAAT 59.166 33.333 0.00 0.00 0.00 1.40
736 988 7.172342 AGACACATAATTACAGCAAGGGTTAA 58.828 34.615 0.00 0.00 0.00 2.01
737 989 6.717289 AGACACATAATTACAGCAAGGGTTA 58.283 36.000 0.00 0.00 0.00 2.85
739 991 5.179452 AGACACATAATTACAGCAAGGGT 57.821 39.130 0.00 0.00 0.00 4.34
740 992 5.647658 TGAAGACACATAATTACAGCAAGGG 59.352 40.000 0.00 0.00 0.00 3.95
741 993 6.741992 TGAAGACACATAATTACAGCAAGG 57.258 37.500 0.00 0.00 0.00 3.61
743 995 7.661437 AGAGTTGAAGACACATAATTACAGCAA 59.339 33.333 0.00 0.00 0.00 3.91
744 996 7.161404 AGAGTTGAAGACACATAATTACAGCA 58.839 34.615 0.00 0.00 0.00 4.41
746 998 9.208022 TCAAGAGTTGAAGACACATAATTACAG 57.792 33.333 0.00 0.00 36.59 2.74
747 999 9.725019 ATCAAGAGTTGAAGACACATAATTACA 57.275 29.630 0.00 0.00 43.95 2.41
749 1001 9.942850 TGATCAAGAGTTGAAGACACATAATTA 57.057 29.630 0.00 0.00 43.95 1.40
750 1002 8.853077 TGATCAAGAGTTGAAGACACATAATT 57.147 30.769 0.00 0.00 43.95 1.40
751 1003 8.853077 TTGATCAAGAGTTGAAGACACATAAT 57.147 30.769 3.38 0.00 43.95 1.28
753 1005 7.670364 TCTTGATCAAGAGTTGAAGACACATA 58.330 34.615 30.05 6.20 43.95 2.29
847 1215 8.470002 TCTTCTCTCAAAAAGAAAAGGAAAAGG 58.530 33.333 0.00 0.00 32.60 3.11
865 1233 4.651962 AGGGGTTATAACTGCTCTTCTCTC 59.348 45.833 15.05 0.00 0.00 3.20
866 1234 4.407296 CAGGGGTTATAACTGCTCTTCTCT 59.593 45.833 15.05 0.00 0.00 3.10
874 1242 7.582667 ACATTAATTCAGGGGTTATAACTGC 57.417 36.000 15.05 0.00 32.42 4.40
885 1253 8.430801 TCACAAACAAAAACATTAATTCAGGG 57.569 30.769 0.00 0.00 0.00 4.45
893 1261 8.376203 CAACGTTCATCACAAACAAAAACATTA 58.624 29.630 0.00 0.00 0.00 1.90
894 1262 6.959671 ACGTTCATCACAAACAAAAACATT 57.040 29.167 0.00 0.00 0.00 2.71
895 1263 6.367422 ACAACGTTCATCACAAACAAAAACAT 59.633 30.769 0.00 0.00 0.00 2.71
937 1305 6.712095 AGTTCAGAACAAATGCACTATTCTCA 59.288 34.615 15.85 0.00 0.00 3.27
940 1308 7.536622 CAGAAGTTCAGAACAAATGCACTATTC 59.463 37.037 15.85 6.33 0.00 1.75
941 1309 7.229306 TCAGAAGTTCAGAACAAATGCACTATT 59.771 33.333 15.85 0.00 0.00 1.73
944 1312 4.883585 TCAGAAGTTCAGAACAAATGCACT 59.116 37.500 15.85 1.58 0.00 4.40
1150 1530 1.378778 CGGAAGAGGAGTCGGGAGT 60.379 63.158 0.00 0.00 0.00 3.85
1153 1533 2.416432 GGTCGGAAGAGGAGTCGGG 61.416 68.421 0.00 0.00 43.49 5.14
1437 1817 1.836391 CGGGGCATTATCAGGTGGA 59.164 57.895 0.00 0.00 0.00 4.02
1482 1862 0.322008 CCTGAGTGGGAGAAGTTGGC 60.322 60.000 0.00 0.00 0.00 4.52
1486 1866 2.948720 GCGCCTGAGTGGGAGAAGT 61.949 63.158 0.00 0.00 36.00 3.01
1707 2087 1.065102 GTCACGCTTCTATCAGCCGTA 59.935 52.381 0.00 0.00 36.31 4.02
1848 2228 1.505353 CGAGTACTTCCGCTTCCGT 59.495 57.895 0.00 0.00 0.00 4.69
2031 2411 0.608640 GCTGCTGGTACTGGTACTGT 59.391 55.000 10.19 0.00 44.39 3.55
2493 2882 0.539438 TGAAATGGAGGTGGTGGTGC 60.539 55.000 0.00 0.00 0.00 5.01
2500 2893 5.452078 TTTTAGCAAGTGAAATGGAGGTG 57.548 39.130 0.00 0.00 0.00 4.00
2516 2909 5.571741 GGCCGTTCAAGAAGTTAATTTTAGC 59.428 40.000 0.00 0.00 0.00 3.09
2519 2912 5.523438 TGGCCGTTCAAGAAGTTAATTTT 57.477 34.783 0.00 0.00 0.00 1.82
2555 2948 4.300803 CTGCAAGCAAAGCAATTTAGACA 58.699 39.130 0.00 0.00 42.17 3.41
2588 2981 3.717294 GGCCAGTCCATCACCGGT 61.717 66.667 0.00 0.00 34.01 5.28
2672 3070 4.782156 AGCAACCAAATTAATCCCATCCAA 59.218 37.500 0.00 0.00 0.00 3.53
2680 3078 6.751888 ACGCAGAAATAGCAACCAAATTAATC 59.248 34.615 0.00 0.00 0.00 1.75
2681 3079 6.630071 ACGCAGAAATAGCAACCAAATTAAT 58.370 32.000 0.00 0.00 0.00 1.40
2689 3087 4.318121 CGAATAGACGCAGAAATAGCAACC 60.318 45.833 0.00 0.00 0.00 3.77
2719 3119 6.385033 AGAGCATACAAAATCAGCTGAAAAC 58.615 36.000 22.50 3.12 35.36 2.43
2735 3135 9.326413 ACCTATATACAACACAAAAGAGCATAC 57.674 33.333 0.00 0.00 0.00 2.39
2750 3150 8.685257 ATGATCCTTGGATGACCTATATACAA 57.315 34.615 6.92 0.00 37.04 2.41
2838 3361 7.174946 ACAACGACATCCATTTATTCAGAAAGT 59.825 33.333 0.00 0.00 0.00 2.66
2861 3384 7.758076 CAGTAACTTAACATACCATCTCGACAA 59.242 37.037 0.00 0.00 0.00 3.18
2863 3386 7.431668 GTCAGTAACTTAACATACCATCTCGAC 59.568 40.741 0.00 0.00 0.00 4.20
2867 3390 7.400599 TCGTCAGTAACTTAACATACCATCT 57.599 36.000 0.00 0.00 0.00 2.90
3025 3549 0.924090 GACGTGCCGAGATGAATGAC 59.076 55.000 0.00 0.00 0.00 3.06
3054 3578 8.062065 ACACAGATTTTGACAAGTTTTCCTAA 57.938 30.769 0.00 0.00 0.00 2.69
3055 3579 7.639113 ACACAGATTTTGACAAGTTTTCCTA 57.361 32.000 0.00 0.00 0.00 2.94
3063 3587 5.005012 CAGCACAAACACAGATTTTGACAAG 59.995 40.000 1.97 0.00 37.39 3.16
3073 3597 1.093972 CACCACAGCACAAACACAGA 58.906 50.000 0.00 0.00 0.00 3.41
3074 3598 1.093972 TCACCACAGCACAAACACAG 58.906 50.000 0.00 0.00 0.00 3.66
3075 3599 0.808125 GTCACCACAGCACAAACACA 59.192 50.000 0.00 0.00 0.00 3.72
3076 3600 1.064060 GAGTCACCACAGCACAAACAC 59.936 52.381 0.00 0.00 0.00 3.32
3077 3601 1.339535 TGAGTCACCACAGCACAAACA 60.340 47.619 0.00 0.00 0.00 2.83
3078 3602 1.378531 TGAGTCACCACAGCACAAAC 58.621 50.000 0.00 0.00 0.00 2.93
3079 3603 2.121291 TTGAGTCACCACAGCACAAA 57.879 45.000 0.00 0.00 0.00 2.83
3082 3606 1.268032 CGTTTTGAGTCACCACAGCAC 60.268 52.381 0.00 0.00 0.00 4.40
3083 3607 1.013596 CGTTTTGAGTCACCACAGCA 58.986 50.000 0.00 0.00 0.00 4.41
3084 3608 1.295792 TCGTTTTGAGTCACCACAGC 58.704 50.000 0.00 0.00 0.00 4.40
3085 3609 2.675844 TGTTCGTTTTGAGTCACCACAG 59.324 45.455 0.00 0.00 0.00 3.66
3096 3620 2.601266 CGCCAAGTACCTGTTCGTTTTG 60.601 50.000 0.00 0.00 0.00 2.44
3183 3707 2.503061 CCGGTGATGAGCTCCAGG 59.497 66.667 12.15 1.64 0.00 4.45
3273 3797 0.951040 GTACTGCCGTTCTGCTGCTT 60.951 55.000 0.00 0.00 33.92 3.91
3282 3806 1.673626 CGGTGGTATTGTACTGCCGTT 60.674 52.381 0.00 0.00 39.30 4.44
3285 3809 2.965572 TACGGTGGTATTGTACTGCC 57.034 50.000 0.00 0.00 0.00 4.85
3318 3846 2.736236 CGAGCAAGAGCAGCACGT 60.736 61.111 0.00 0.00 45.49 4.49
3512 4049 0.037232 AAGGTTCTTCTTCCTCGCCG 60.037 55.000 0.00 0.00 33.09 6.46
3538 4094 3.112709 GCGAGACGTTGCCAGGTC 61.113 66.667 2.56 2.56 37.97 3.85
3731 4288 0.450983 CGTACTCGGAGGAGGTGAAC 59.549 60.000 10.23 0.00 44.93 3.18
3736 4293 3.217743 GGGCGTACTCGGAGGAGG 61.218 72.222 10.23 7.81 44.93 4.30
3777 4334 1.742768 GTGGCTACAGATCCCTCCG 59.257 63.158 0.00 0.00 0.00 4.63
3799 4356 6.496571 CAAGCTCTCATGGATCTTCAATTTC 58.503 40.000 0.00 0.00 29.11 2.17
3800 4357 5.163540 GCAAGCTCTCATGGATCTTCAATTT 60.164 40.000 0.00 0.00 29.11 1.82
3803 4360 3.054582 AGCAAGCTCTCATGGATCTTCAA 60.055 43.478 0.00 0.00 29.11 2.69
3804 4361 2.504585 AGCAAGCTCTCATGGATCTTCA 59.495 45.455 0.00 0.00 29.11 3.02
3805 4362 3.196939 AGCAAGCTCTCATGGATCTTC 57.803 47.619 0.00 0.00 29.11 2.87
3873 4876 5.418676 AGACACCAAACAAAAATTCACTGG 58.581 37.500 0.00 0.00 0.00 4.00
3884 4887 7.934665 ACACACATATAGTAAGACACCAAACAA 59.065 33.333 0.00 0.00 0.00 2.83
3886 4889 7.623506 GCACACACATATAGTAAGACACCAAAC 60.624 40.741 0.00 0.00 0.00 2.93
3891 4894 5.661458 AGGCACACACATATAGTAAGACAC 58.339 41.667 0.00 0.00 0.00 3.67
3901 4904 5.039920 ACACATCATAGGCACACACATAT 57.960 39.130 0.00 0.00 0.00 1.78
3907 4910 6.761242 TCTTAATGTACACATCATAGGCACAC 59.239 38.462 0.00 0.00 35.10 3.82
3915 4918 6.936900 GCATACCCTCTTAATGTACACATCAT 59.063 38.462 0.00 0.00 35.10 2.45
3983 4989 3.680490 TCGGAGCATATGACAAAACCAA 58.320 40.909 6.97 0.00 0.00 3.67
3985 4991 4.156008 AGTTTCGGAGCATATGACAAAACC 59.844 41.667 6.97 0.00 0.00 3.27
3991 4997 6.043411 AGTTCTTAGTTTCGGAGCATATGAC 58.957 40.000 6.97 0.00 0.00 3.06
3992 4998 6.222038 AGTTCTTAGTTTCGGAGCATATGA 57.778 37.500 6.97 0.00 0.00 2.15
3993 4999 7.169982 CCTTAGTTCTTAGTTTCGGAGCATATG 59.830 40.741 0.00 0.00 0.00 1.78
3994 5000 7.147707 ACCTTAGTTCTTAGTTTCGGAGCATAT 60.148 37.037 0.00 0.00 0.00 1.78
3995 5001 6.154021 ACCTTAGTTCTTAGTTTCGGAGCATA 59.846 38.462 0.00 0.00 0.00 3.14
3996 5002 5.046520 ACCTTAGTTCTTAGTTTCGGAGCAT 60.047 40.000 0.00 0.00 0.00 3.79
3997 5003 4.282703 ACCTTAGTTCTTAGTTTCGGAGCA 59.717 41.667 0.00 0.00 0.00 4.26
3998 5004 4.818642 ACCTTAGTTCTTAGTTTCGGAGC 58.181 43.478 0.00 0.00 0.00 4.70
3999 5005 6.094061 CAGACCTTAGTTCTTAGTTTCGGAG 58.906 44.000 0.00 0.00 0.00 4.63
4000 5006 5.047519 CCAGACCTTAGTTCTTAGTTTCGGA 60.048 44.000 0.00 0.00 0.00 4.55
4004 5012 7.607615 TGTACCAGACCTTAGTTCTTAGTTT 57.392 36.000 0.00 0.00 0.00 2.66
4020 5028 1.533625 GCACCTTGCATTGTACCAGA 58.466 50.000 0.00 0.00 44.26 3.86
4031 5039 1.308783 GCCACCTCTAAGCACCTTGC 61.309 60.000 0.00 0.00 45.46 4.01
4032 5040 1.021390 CGCCACCTCTAAGCACCTTG 61.021 60.000 0.00 0.00 0.00 3.61
4033 5041 1.296715 CGCCACCTCTAAGCACCTT 59.703 57.895 0.00 0.00 0.00 3.50
4034 5042 2.982130 CGCCACCTCTAAGCACCT 59.018 61.111 0.00 0.00 0.00 4.00
4035 5043 2.804828 AAGCGCCACCTCTAAGCACC 62.805 60.000 2.29 0.00 0.00 5.01
4036 5044 0.108329 TAAGCGCCACCTCTAAGCAC 60.108 55.000 2.29 0.00 0.00 4.40
4037 5045 0.175760 CTAAGCGCCACCTCTAAGCA 59.824 55.000 2.29 0.00 0.00 3.91
4038 5046 0.460311 TCTAAGCGCCACCTCTAAGC 59.540 55.000 2.29 0.00 0.00 3.09
4039 5047 4.585955 TTATCTAAGCGCCACCTCTAAG 57.414 45.455 2.29 0.00 0.00 2.18
4040 5048 4.404715 AGTTTATCTAAGCGCCACCTCTAA 59.595 41.667 2.29 0.00 0.00 2.10
4041 5049 3.958798 AGTTTATCTAAGCGCCACCTCTA 59.041 43.478 2.29 0.00 0.00 2.43
4042 5050 2.766828 AGTTTATCTAAGCGCCACCTCT 59.233 45.455 2.29 0.00 0.00 3.69
4043 5051 2.866762 CAGTTTATCTAAGCGCCACCTC 59.133 50.000 2.29 0.00 0.00 3.85
4044 5052 2.420129 CCAGTTTATCTAAGCGCCACCT 60.420 50.000 2.29 0.00 0.00 4.00
4045 5053 1.940613 CCAGTTTATCTAAGCGCCACC 59.059 52.381 2.29 0.00 0.00 4.61
4046 5054 2.629051 ACCAGTTTATCTAAGCGCCAC 58.371 47.619 2.29 0.00 0.00 5.01
4047 5055 3.343941 AACCAGTTTATCTAAGCGCCA 57.656 42.857 2.29 0.00 0.00 5.69
4048 5056 4.696899 AAAACCAGTTTATCTAAGCGCC 57.303 40.909 2.29 0.00 31.63 6.53
4078 5086 5.482908 ACTCTCTACAAATAAGCACTGGTG 58.517 41.667 0.00 0.00 0.00 4.17
4079 5087 5.746990 ACTCTCTACAAATAAGCACTGGT 57.253 39.130 0.00 0.00 0.00 4.00
4080 5088 6.975772 GTCTACTCTCTACAAATAAGCACTGG 59.024 42.308 0.00 0.00 0.00 4.00
4081 5089 6.689241 CGTCTACTCTCTACAAATAAGCACTG 59.311 42.308 0.00 0.00 0.00 3.66
4082 5090 6.374894 ACGTCTACTCTCTACAAATAAGCACT 59.625 38.462 0.00 0.00 0.00 4.40
4083 5091 6.469595 CACGTCTACTCTCTACAAATAAGCAC 59.530 42.308 0.00 0.00 0.00 4.40
4084 5092 6.150641 ACACGTCTACTCTCTACAAATAAGCA 59.849 38.462 0.00 0.00 0.00 3.91
4085 5093 6.553524 ACACGTCTACTCTCTACAAATAAGC 58.446 40.000 0.00 0.00 0.00 3.09
4090 5098 8.671921 CCTAATTACACGTCTACTCTCTACAAA 58.328 37.037 0.00 0.00 0.00 2.83
4091 5099 7.201679 GCCTAATTACACGTCTACTCTCTACAA 60.202 40.741 0.00 0.00 0.00 2.41
4092 5100 6.259608 GCCTAATTACACGTCTACTCTCTACA 59.740 42.308 0.00 0.00 0.00 2.74
4093 5101 6.259608 TGCCTAATTACACGTCTACTCTCTAC 59.740 42.308 0.00 0.00 0.00 2.59
4094 5102 6.259608 GTGCCTAATTACACGTCTACTCTCTA 59.740 42.308 0.00 0.00 0.00 2.43
4095 5103 5.066246 GTGCCTAATTACACGTCTACTCTCT 59.934 44.000 0.00 0.00 0.00 3.10
4096 5104 5.272397 GTGCCTAATTACACGTCTACTCTC 58.728 45.833 0.00 0.00 0.00 3.20
4097 5105 4.097589 GGTGCCTAATTACACGTCTACTCT 59.902 45.833 0.00 0.00 37.68 3.24
4098 5106 4.357996 GGTGCCTAATTACACGTCTACTC 58.642 47.826 0.00 0.00 37.68 2.59
4099 5107 3.131755 GGGTGCCTAATTACACGTCTACT 59.868 47.826 0.00 0.00 37.68 2.57
4100 5108 3.451526 GGGTGCCTAATTACACGTCTAC 58.548 50.000 0.00 0.00 37.68 2.59
4101 5109 2.431782 GGGGTGCCTAATTACACGTCTA 59.568 50.000 0.00 0.00 37.68 2.59
4102 5110 1.208776 GGGGTGCCTAATTACACGTCT 59.791 52.381 0.00 0.00 37.68 4.18
4103 5111 1.208776 AGGGGTGCCTAATTACACGTC 59.791 52.381 0.00 0.00 37.68 4.34
4104 5112 1.208776 GAGGGGTGCCTAATTACACGT 59.791 52.381 1.41 0.00 37.68 4.49
4105 5113 1.474498 GGAGGGGTGCCTAATTACACG 60.474 57.143 1.41 0.00 37.68 4.49
4106 5114 1.844497 AGGAGGGGTGCCTAATTACAC 59.156 52.381 0.00 0.00 32.92 2.90
4107 5115 2.280308 AGGAGGGGTGCCTAATTACA 57.720 50.000 0.00 0.00 32.92 2.41
4108 5116 3.043418 TGTAGGAGGGGTGCCTAATTAC 58.957 50.000 0.00 0.00 39.58 1.89
4109 5117 3.424724 TGTAGGAGGGGTGCCTAATTA 57.575 47.619 0.00 0.00 39.58 1.40
4110 5118 2.280308 TGTAGGAGGGGTGCCTAATT 57.720 50.000 0.00 0.00 39.58 1.40
4111 5119 2.280308 TTGTAGGAGGGGTGCCTAAT 57.720 50.000 0.00 0.00 39.58 1.73
4112 5120 1.913419 CTTTGTAGGAGGGGTGCCTAA 59.087 52.381 0.00 0.00 39.58 2.69
4113 5121 1.580059 CTTTGTAGGAGGGGTGCCTA 58.420 55.000 0.00 0.00 36.96 3.93
4114 5122 1.853250 GCTTTGTAGGAGGGGTGCCT 61.853 60.000 0.00 0.00 39.56 4.75
4115 5123 1.378646 GCTTTGTAGGAGGGGTGCC 60.379 63.158 0.00 0.00 0.00 5.01
4116 5124 1.378646 GGCTTTGTAGGAGGGGTGC 60.379 63.158 0.00 0.00 0.00 5.01
4117 5125 0.404040 TTGGCTTTGTAGGAGGGGTG 59.596 55.000 0.00 0.00 0.00 4.61
4118 5126 0.698818 CTTGGCTTTGTAGGAGGGGT 59.301 55.000 0.00 0.00 0.00 4.95
4119 5127 0.681243 GCTTGGCTTTGTAGGAGGGG 60.681 60.000 0.00 0.00 0.00 4.79
4120 5128 0.038166 TGCTTGGCTTTGTAGGAGGG 59.962 55.000 0.00 0.00 0.00 4.30
4121 5129 1.168714 GTGCTTGGCTTTGTAGGAGG 58.831 55.000 0.00 0.00 0.00 4.30
4122 5130 1.808945 CAGTGCTTGGCTTTGTAGGAG 59.191 52.381 0.00 0.00 0.00 3.69
4123 5131 1.545428 CCAGTGCTTGGCTTTGTAGGA 60.545 52.381 0.00 0.00 40.87 2.94
4124 5132 0.883833 CCAGTGCTTGGCTTTGTAGG 59.116 55.000 0.00 0.00 40.87 3.18
4138 5146 1.871080 ACTTTTCTCGAGCACCAGTG 58.129 50.000 7.81 0.00 0.00 3.66
4139 5147 2.614057 CAAACTTTTCTCGAGCACCAGT 59.386 45.455 7.81 4.12 0.00 4.00
4140 5148 2.031682 CCAAACTTTTCTCGAGCACCAG 60.032 50.000 7.81 3.46 0.00 4.00
4141 5149 1.946768 CCAAACTTTTCTCGAGCACCA 59.053 47.619 7.81 0.00 0.00 4.17
4142 5150 1.335051 GCCAAACTTTTCTCGAGCACC 60.335 52.381 7.81 0.00 0.00 5.01
4143 5151 1.604278 AGCCAAACTTTTCTCGAGCAC 59.396 47.619 7.81 0.00 0.00 4.40
4144 5152 1.967319 AGCCAAACTTTTCTCGAGCA 58.033 45.000 7.81 0.00 0.00 4.26
4145 5153 4.393371 AGATAAGCCAAACTTTTCTCGAGC 59.607 41.667 7.81 0.00 41.24 5.03
4146 5154 6.487689 AAGATAAGCCAAACTTTTCTCGAG 57.512 37.500 5.93 5.93 43.40 4.04
4147 5155 7.159372 AGTAAGATAAGCCAAACTTTTCTCGA 58.841 34.615 0.00 0.00 43.40 4.04
4148 5156 7.365840 AGTAAGATAAGCCAAACTTTTCTCG 57.634 36.000 0.00 0.00 43.40 4.04
4150 5158 9.794719 ACTTAGTAAGATAAGCCAAACTTTTCT 57.205 29.630 16.89 0.00 45.31 2.52
4153 5161 9.445878 GGTACTTAGTAAGATAAGCCAAACTTT 57.554 33.333 16.89 0.00 39.97 2.66
4154 5162 8.823794 AGGTACTTAGTAAGATAAGCCAAACTT 58.176 33.333 16.89 0.00 37.78 2.66
4155 5163 8.376803 AGGTACTTAGTAAGATAAGCCAAACT 57.623 34.615 16.89 0.00 36.42 2.66
4156 5164 7.710044 GGAGGTACTTAGTAAGATAAGCCAAAC 59.290 40.741 16.89 6.60 41.55 2.93
4157 5165 7.622479 AGGAGGTACTTAGTAAGATAAGCCAAA 59.378 37.037 16.89 0.00 41.55 3.28
4158 5166 7.130775 AGGAGGTACTTAGTAAGATAAGCCAA 58.869 38.462 16.89 0.00 41.55 4.52
4159 5167 6.680540 AGGAGGTACTTAGTAAGATAAGCCA 58.319 40.000 16.89 0.00 41.55 4.75
4160 5168 7.005902 AGAGGAGGTACTTAGTAAGATAAGCC 58.994 42.308 16.89 11.17 41.55 4.35
4161 5169 9.571816 TTAGAGGAGGTACTTAGTAAGATAAGC 57.428 37.037 16.89 10.39 41.55 3.09
4163 5171 9.571816 GCTTAGAGGAGGTACTTAGTAAGATAA 57.428 37.037 16.89 0.00 41.55 1.75
4164 5172 8.721479 TGCTTAGAGGAGGTACTTAGTAAGATA 58.279 37.037 16.89 2.98 41.55 1.98
4165 5173 7.503230 GTGCTTAGAGGAGGTACTTAGTAAGAT 59.497 40.741 16.89 3.90 41.55 2.40
4166 5174 6.827762 GTGCTTAGAGGAGGTACTTAGTAAGA 59.172 42.308 16.89 0.00 41.55 2.10
4167 5175 6.039605 GGTGCTTAGAGGAGGTACTTAGTAAG 59.960 46.154 8.41 8.41 41.55 2.34
4168 5176 5.890419 GGTGCTTAGAGGAGGTACTTAGTAA 59.110 44.000 0.00 0.00 41.55 2.24
4169 5177 5.193325 AGGTGCTTAGAGGAGGTACTTAGTA 59.807 44.000 0.00 0.00 41.55 1.82
4170 5178 4.017314 AGGTGCTTAGAGGAGGTACTTAGT 60.017 45.833 0.00 0.00 41.55 2.24
4171 5179 4.538738 AGGTGCTTAGAGGAGGTACTTAG 58.461 47.826 0.00 0.00 41.55 2.18
4172 5180 4.604784 AGGTGCTTAGAGGAGGTACTTA 57.395 45.455 0.00 0.00 41.55 2.24
4173 5181 3.476485 AGGTGCTTAGAGGAGGTACTT 57.524 47.619 0.00 0.00 41.55 2.24
4174 5182 4.696596 GCAAGGTGCTTAGAGGAGGTACT 61.697 52.174 0.00 0.00 41.13 2.73
4175 5183 2.418884 GCAAGGTGCTTAGAGGAGGTAC 60.419 54.545 0.00 0.00 40.96 3.34
4176 5184 1.831736 GCAAGGTGCTTAGAGGAGGTA 59.168 52.381 0.00 0.00 40.96 3.08
4177 5185 0.615850 GCAAGGTGCTTAGAGGAGGT 59.384 55.000 0.00 0.00 40.96 3.85
4178 5186 0.615331 TGCAAGGTGCTTAGAGGAGG 59.385 55.000 1.43 0.00 45.31 4.30
4179 5187 2.021355 CTGCAAGGTGCTTAGAGGAG 57.979 55.000 1.43 0.00 45.31 3.69
4200 5208 8.755018 CCTATTCACAACACTTTGCTTTTTAAG 58.245 33.333 0.00 0.00 36.00 1.85
4201 5209 8.470805 TCCTATTCACAACACTTTGCTTTTTAA 58.529 29.630 0.00 0.00 36.00 1.52
4202 5210 8.001881 TCCTATTCACAACACTTTGCTTTTTA 57.998 30.769 0.00 0.00 36.00 1.52
4203 5211 6.872920 TCCTATTCACAACACTTTGCTTTTT 58.127 32.000 0.00 0.00 36.00 1.94
4204 5212 6.463995 TCCTATTCACAACACTTTGCTTTT 57.536 33.333 0.00 0.00 36.00 2.27
4205 5213 6.655078 ATCCTATTCACAACACTTTGCTTT 57.345 33.333 0.00 0.00 36.00 3.51
4206 5214 6.375455 CCTATCCTATTCACAACACTTTGCTT 59.625 38.462 0.00 0.00 36.00 3.91
4207 5215 5.882557 CCTATCCTATTCACAACACTTTGCT 59.117 40.000 0.00 0.00 36.00 3.91
4208 5216 5.066505 CCCTATCCTATTCACAACACTTTGC 59.933 44.000 0.00 0.00 36.00 3.68
4209 5217 6.180472 ACCCTATCCTATTCACAACACTTTG 58.820 40.000 0.00 0.00 38.83 2.77
4210 5218 6.215636 AGACCCTATCCTATTCACAACACTTT 59.784 38.462 0.00 0.00 0.00 2.66
4211 5219 5.726793 AGACCCTATCCTATTCACAACACTT 59.273 40.000 0.00 0.00 0.00 3.16
4212 5220 5.281314 AGACCCTATCCTATTCACAACACT 58.719 41.667 0.00 0.00 0.00 3.55
4213 5221 5.615925 AGACCCTATCCTATTCACAACAC 57.384 43.478 0.00 0.00 0.00 3.32
4214 5222 5.487488 ACAAGACCCTATCCTATTCACAACA 59.513 40.000 0.00 0.00 0.00 3.33
4215 5223 5.817816 CACAAGACCCTATCCTATTCACAAC 59.182 44.000 0.00 0.00 0.00 3.32
4216 5224 5.724370 TCACAAGACCCTATCCTATTCACAA 59.276 40.000 0.00 0.00 0.00 3.33
4217 5225 5.277250 TCACAAGACCCTATCCTATTCACA 58.723 41.667 0.00 0.00 0.00 3.58
4218 5226 5.871396 TCACAAGACCCTATCCTATTCAC 57.129 43.478 0.00 0.00 0.00 3.18
4219 5227 5.724370 TGTTCACAAGACCCTATCCTATTCA 59.276 40.000 0.00 0.00 0.00 2.57
4220 5228 6.049790 GTGTTCACAAGACCCTATCCTATTC 58.950 44.000 0.00 0.00 0.00 1.75
4221 5229 5.395324 CGTGTTCACAAGACCCTATCCTATT 60.395 44.000 3.87 0.00 0.00 1.73
4222 5230 4.099573 CGTGTTCACAAGACCCTATCCTAT 59.900 45.833 3.87 0.00 0.00 2.57
4223 5231 3.446161 CGTGTTCACAAGACCCTATCCTA 59.554 47.826 3.87 0.00 0.00 2.94
4224 5232 2.233922 CGTGTTCACAAGACCCTATCCT 59.766 50.000 3.87 0.00 0.00 3.24
4225 5233 2.232941 TCGTGTTCACAAGACCCTATCC 59.767 50.000 3.87 0.00 29.71 2.59
4226 5234 3.587797 TCGTGTTCACAAGACCCTATC 57.412 47.619 3.87 0.00 29.71 2.08
4227 5235 4.202326 ACTTTCGTGTTCACAAGACCCTAT 60.202 41.667 9.08 0.00 34.26 2.57
4228 5236 3.133362 ACTTTCGTGTTCACAAGACCCTA 59.867 43.478 9.08 0.00 34.26 3.53
4229 5237 2.093128 ACTTTCGTGTTCACAAGACCCT 60.093 45.455 9.08 0.00 34.26 4.34
4230 5238 2.031683 CACTTTCGTGTTCACAAGACCC 59.968 50.000 9.08 0.00 34.26 4.46
4231 5239 2.933906 TCACTTTCGTGTTCACAAGACC 59.066 45.455 9.08 0.00 41.89 3.85
4232 5240 4.270084 TCATCACTTTCGTGTTCACAAGAC 59.730 41.667 9.08 0.00 41.89 3.01
4233 5241 4.438148 TCATCACTTTCGTGTTCACAAGA 58.562 39.130 9.08 0.00 41.89 3.02
4234 5242 4.766007 CTCATCACTTTCGTGTTCACAAG 58.234 43.478 3.87 3.27 41.89 3.16
4235 5243 3.002246 GCTCATCACTTTCGTGTTCACAA 59.998 43.478 3.87 0.00 41.89 3.33
4236 5244 2.543848 GCTCATCACTTTCGTGTTCACA 59.456 45.455 3.87 0.00 41.89 3.58
4237 5245 2.802816 AGCTCATCACTTTCGTGTTCAC 59.197 45.455 0.00 0.00 41.89 3.18
4238 5246 3.059884 GAGCTCATCACTTTCGTGTTCA 58.940 45.455 9.40 0.00 41.89 3.18
4239 5247 2.091277 CGAGCTCATCACTTTCGTGTTC 59.909 50.000 15.40 0.00 41.89 3.18
4240 5248 2.061773 CGAGCTCATCACTTTCGTGTT 58.938 47.619 15.40 0.00 41.89 3.32
4241 5249 1.269723 TCGAGCTCATCACTTTCGTGT 59.730 47.619 15.40 0.00 41.89 4.49
4242 5250 1.916651 CTCGAGCTCATCACTTTCGTG 59.083 52.381 15.40 0.00 42.59 4.35
4243 5251 1.734047 GCTCGAGCTCATCACTTTCGT 60.734 52.381 29.88 0.00 38.21 3.85
4244 5252 0.919981 GCTCGAGCTCATCACTTTCG 59.080 55.000 29.88 0.00 38.21 3.46
4263 5271 2.289882 TGTTCATCCAAGCTCCTGTGAG 60.290 50.000 0.00 0.00 41.84 3.51
4264 5272 1.699083 TGTTCATCCAAGCTCCTGTGA 59.301 47.619 0.00 0.00 0.00 3.58
4265 5273 2.082231 CTGTTCATCCAAGCTCCTGTG 58.918 52.381 0.00 0.00 0.00 3.66
4266 5274 1.701847 ACTGTTCATCCAAGCTCCTGT 59.298 47.619 0.00 0.00 0.00 4.00
4267 5275 2.486472 ACTGTTCATCCAAGCTCCTG 57.514 50.000 0.00 0.00 0.00 3.86
4268 5276 4.640771 TTTACTGTTCATCCAAGCTCCT 57.359 40.909 0.00 0.00 0.00 3.69
4269 5277 5.649831 AGAATTTACTGTTCATCCAAGCTCC 59.350 40.000 0.00 0.00 0.00 4.70
4270 5278 6.549952 CAGAATTTACTGTTCATCCAAGCTC 58.450 40.000 0.00 0.00 33.73 4.09
4271 5279 5.105997 GCAGAATTTACTGTTCATCCAAGCT 60.106 40.000 0.00 0.00 39.73 3.74
4272 5280 5.098211 GCAGAATTTACTGTTCATCCAAGC 58.902 41.667 0.00 0.00 39.73 4.01
4275 5283 6.647334 TTTGCAGAATTTACTGTTCATCCA 57.353 33.333 0.00 0.00 39.73 3.41
4293 5301 5.155278 TCGAAGGGAGTACTATTTTTGCA 57.845 39.130 0.00 0.00 0.00 4.08
4295 5303 7.668525 ACTTTCGAAGGGAGTACTATTTTTG 57.331 36.000 12.29 0.00 0.00 2.44
4303 5311 5.131594 AGTACAACTTTCGAAGGGAGTAC 57.868 43.478 24.13 24.13 35.87 2.73
4327 5335 8.534333 TCGATCTAAATTAATTATCGCAGCTT 57.466 30.769 19.89 0.00 29.96 3.74
4330 5338 8.383619 CCCTTCGATCTAAATTAATTATCGCAG 58.616 37.037 19.89 18.58 29.96 5.18
4406 5416 8.945057 GTGAAATTTTGCATGGGTGTATAAAAT 58.055 29.630 0.00 0.00 32.36 1.82
4518 5533 5.698741 ATGAAATCACATCTGTGGAGGTA 57.301 39.130 10.26 0.00 45.65 3.08
4520 5535 5.066117 CAGAATGAAATCACATCTGTGGAGG 59.934 44.000 10.26 0.00 42.37 4.30
4541 5556 5.478407 TCTACATGCGTTCAGATTTTCAGA 58.522 37.500 0.00 0.00 0.00 3.27
4543 5558 5.931724 TCTTCTACATGCGTTCAGATTTTCA 59.068 36.000 0.00 0.00 0.00 2.69
4544 5559 6.408858 TCTTCTACATGCGTTCAGATTTTC 57.591 37.500 0.00 0.00 0.00 2.29
4550 5565 4.990543 TGTTTCTTCTACATGCGTTCAG 57.009 40.909 0.00 0.00 0.00 3.02
4553 5568 5.940192 TTGATGTTTCTTCTACATGCGTT 57.060 34.783 0.00 0.00 36.41 4.84
4613 5636 6.148811 GTCGGATGAACAGTAAAATCCAGAAA 59.851 38.462 8.91 0.00 38.85 2.52
4617 5640 4.019681 AGGTCGGATGAACAGTAAAATCCA 60.020 41.667 8.91 0.00 38.85 3.41
4618 5641 4.514401 AGGTCGGATGAACAGTAAAATCC 58.486 43.478 0.00 0.00 32.76 3.01
4621 5644 3.006110 ACGAGGTCGGATGAACAGTAAAA 59.994 43.478 4.13 0.00 44.95 1.52
4638 5661 1.444553 GGTTCGAGCTCACACGAGG 60.445 63.158 15.40 0.00 40.02 4.63
4642 5665 0.320771 ACATGGGTTCGAGCTCACAC 60.321 55.000 15.40 7.04 0.00 3.82
4643 5666 1.067142 GTACATGGGTTCGAGCTCACA 60.067 52.381 15.40 4.59 0.00 3.58
4659 5682 2.209690 TCACGGAGACATGGAGTACA 57.790 50.000 0.00 0.00 0.00 2.90
4660 5683 3.802948 ATTCACGGAGACATGGAGTAC 57.197 47.619 0.00 0.00 0.00 2.73
4661 5684 7.776618 ATAATATTCACGGAGACATGGAGTA 57.223 36.000 0.00 0.00 0.00 2.59
4672 5695 6.044046 AGCGTACAACAATAATATTCACGGA 58.956 36.000 0.00 0.00 0.00 4.69
4674 5697 7.161829 AGAGCGTACAACAATAATATTCACG 57.838 36.000 0.00 0.00 0.00 4.35
4696 5719 3.070476 TGACATGGCTTGTGCATAAGA 57.930 42.857 25.48 7.19 39.18 2.10
4742 5765 0.325484 CATTTCATTGGCCCCCTCCA 60.325 55.000 0.00 0.00 0.00 3.86
4743 5766 1.050421 CCATTTCATTGGCCCCCTCC 61.050 60.000 0.00 0.00 0.00 4.30
4749 5772 3.189285 CGTTGATTCCATTTCATTGGCC 58.811 45.455 0.00 0.00 36.66 5.36
4751 5774 3.784338 CCCGTTGATTCCATTTCATTGG 58.216 45.455 0.00 0.00 38.18 3.16
4753 5776 2.168313 GGCCCGTTGATTCCATTTCATT 59.832 45.455 0.00 0.00 0.00 2.57
4754 5777 1.756538 GGCCCGTTGATTCCATTTCAT 59.243 47.619 0.00 0.00 0.00 2.57
4770 5793 2.168728 AGAAGATGTCTTACTTCGGCCC 59.831 50.000 0.00 0.00 44.65 5.80



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.