Multiple sequence alignment - TraesCS7B01G130300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G130300 chr7B 100.000 5520 0 0 1 5520 156703141 156708660 0.000000e+00 10194
1 TraesCS7B01G130300 chr7B 86.822 258 27 5 3421 3674 297400453 297400707 1.170000e-71 281
2 TraesCS7B01G130300 chr7A 95.123 4162 177 13 756 4898 202744465 202748619 0.000000e+00 6538
3 TraesCS7B01G130300 chr7A 84.911 338 34 8 4904 5228 202751207 202751540 5.330000e-85 326
4 TraesCS7B01G130300 chr7A 86.047 258 29 5 3421 3674 391906776 391906522 2.530000e-68 270
5 TraesCS7B01G130300 chr7A 89.565 115 6 3 4294 4407 264091846 264091737 2.070000e-29 141
6 TraesCS7B01G130300 chr7A 87.912 91 9 2 5237 5326 202764046 202764135 7.560000e-19 106
7 TraesCS7B01G130300 chrUn 94.637 4233 163 24 799 5008 92259992 92264183 0.000000e+00 6501
8 TraesCS7B01G130300 chrUn 95.290 276 11 2 5052 5326 92264183 92264457 2.360000e-118 436
9 TraesCS7B01G130300 chrUn 96.685 181 6 0 5340 5520 92274064 92274244 8.990000e-78 302
10 TraesCS7B01G130300 chrUn 89.344 122 5 1 5363 5476 92265844 92265965 4.460000e-31 147
11 TraesCS7B01G130300 chr1B 94.435 611 18 2 1 603 683218523 683219125 0.000000e+00 926
12 TraesCS7B01G130300 chr2A 84.768 604 75 10 7 602 705938 705344 1.710000e-164 590
13 TraesCS7B01G130300 chr2A 84.768 604 75 10 7 602 711509 710915 1.710000e-164 590
14 TraesCS7B01G130300 chr2D 87.234 235 28 1 3428 3660 139025738 139025504 3.280000e-67 267
15 TraesCS7B01G130300 chr6A 85.897 234 23 8 3445 3675 63594072 63594298 1.990000e-59 241
16 TraesCS7B01G130300 chr4B 88.060 201 20 3 3462 3660 122218068 122218266 9.240000e-58 235
17 TraesCS7B01G130300 chr3D 83.468 248 35 5 3430 3675 330286191 330286434 5.560000e-55 226
18 TraesCS7B01G130300 chr3D 89.565 115 6 3 4294 4407 21902186 21902295 2.070000e-29 141
19 TraesCS7B01G130300 chr2B 85.135 222 25 6 3443 3660 508959388 508959605 2.590000e-53 220
20 TraesCS7B01G130300 chr2B 89.565 115 6 3 4294 4407 474898038 474897929 2.070000e-29 141
21 TraesCS7B01G130300 chr5D 89.565 115 6 3 4294 4407 240135265 240135374 2.070000e-29 141
22 TraesCS7B01G130300 chr3B 89.565 115 6 3 4294 4407 201510688 201510797 2.070000e-29 141
23 TraesCS7B01G130300 chr3A 89.565 115 6 3 4294 4407 482819345 482819454 2.070000e-29 141
24 TraesCS7B01G130300 chr1D 89.565 115 6 3 4294 4407 254495570 254495679 2.070000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G130300 chr7B 156703141 156708660 5519 False 10194.000000 10194 100.000000 1 5520 1 chr7B.!!$F1 5519
1 TraesCS7B01G130300 chr7A 202744465 202751540 7075 False 3432.000000 6538 90.017000 756 5228 2 chr7A.!!$F2 4472
2 TraesCS7B01G130300 chrUn 92259992 92265965 5973 False 2361.333333 6501 93.090333 799 5476 3 chrUn.!!$F2 4677
3 TraesCS7B01G130300 chr1B 683218523 683219125 602 False 926.000000 926 94.435000 1 603 1 chr1B.!!$F1 602
4 TraesCS7B01G130300 chr2A 705344 705938 594 True 590.000000 590 84.768000 7 602 1 chr2A.!!$R1 595
5 TraesCS7B01G130300 chr2A 710915 711509 594 True 590.000000 590 84.768000 7 602 1 chr2A.!!$R2 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 684 0.310543 AAGCGTTTGCAGCGATTTCA 59.689 45.000 15.36 0.0 46.23 2.69 F
1800 1826 0.173481 TGAGACAGTACGAGGCATGC 59.827 55.000 9.90 9.9 0.00 4.06 F
1938 1964 2.029739 CACATGTTCATGCAAGGCTTCA 60.030 45.455 12.00 0.0 0.00 3.02 F
3143 3173 0.249120 TGGGCATGAGGTAAGACACG 59.751 55.000 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1940 1.403249 GCCTTGCATGAACATGTGACC 60.403 52.381 14.82 0.0 40.80 4.02 R
2713 2743 3.126514 CGAAGTTCGAGCTGGTAACTAGA 59.873 47.826 20.58 0.0 43.74 2.43 R
3861 3892 1.093496 TCAATGAGCAGCGGCAGATG 61.093 55.000 12.44 0.0 44.61 2.90 R
5029 7663 0.036388 ACCTTGATGTAGCCCACACG 60.036 55.000 0.00 0.0 40.86 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 173 1.592400 TTGTAGTCGTCGGCCCTCAG 61.592 60.000 0.00 0.00 0.00 3.35
196 197 5.567423 GCCACATAGCCTCAAATTTGAAACT 60.567 40.000 20.82 20.59 36.64 2.66
250 251 3.378742 TCGCTGCAAACTAAAGAAACCAA 59.621 39.130 0.00 0.00 0.00 3.67
370 371 0.320683 CACTTGACATGACAGCCCGA 60.321 55.000 0.00 0.00 0.00 5.14
475 484 1.152798 GACTCGGACCGGTCCCTAT 60.153 63.158 41.24 28.70 46.96 2.57
492 501 3.369471 CCCTATGACCACAATGTTCGTCT 60.369 47.826 10.55 1.80 0.00 4.18
533 542 0.321210 TCACCACAACATAGCCACGG 60.321 55.000 0.00 0.00 0.00 4.94
534 543 0.605319 CACCACAACATAGCCACGGT 60.605 55.000 0.00 0.00 0.00 4.83
535 544 0.605319 ACCACAACATAGCCACGGTG 60.605 55.000 0.00 0.00 0.00 4.94
536 545 1.305219 CCACAACATAGCCACGGTGG 61.305 60.000 22.87 22.87 41.55 4.61
603 612 4.952957 AGAATTGAGGTCGATCTTCTCTCA 59.047 41.667 0.00 0.00 33.30 3.27
604 613 4.916983 ATTGAGGTCGATCTTCTCTCAG 57.083 45.455 0.00 0.00 36.11 3.35
605 614 3.636153 TGAGGTCGATCTTCTCTCAGA 57.364 47.619 0.00 0.00 31.73 3.27
606 615 3.275143 TGAGGTCGATCTTCTCTCAGAC 58.725 50.000 0.00 0.00 31.73 3.51
607 616 2.616842 GAGGTCGATCTTCTCTCAGACC 59.383 54.545 0.00 4.42 46.06 3.85
608 617 2.650322 GGTCGATCTTCTCTCAGACCT 58.350 52.381 5.30 0.00 43.34 3.85
609 618 3.020984 GGTCGATCTTCTCTCAGACCTT 58.979 50.000 5.30 0.00 43.34 3.50
610 619 3.445805 GGTCGATCTTCTCTCAGACCTTT 59.554 47.826 5.30 0.00 43.34 3.11
611 620 4.439563 GGTCGATCTTCTCTCAGACCTTTC 60.440 50.000 5.30 0.00 43.34 2.62
612 621 4.156922 GTCGATCTTCTCTCAGACCTTTCA 59.843 45.833 0.00 0.00 0.00 2.69
613 622 4.397730 TCGATCTTCTCTCAGACCTTTCAG 59.602 45.833 0.00 0.00 0.00 3.02
614 623 3.951775 TCTTCTCTCAGACCTTTCAGC 57.048 47.619 0.00 0.00 0.00 4.26
615 624 3.234353 TCTTCTCTCAGACCTTTCAGCA 58.766 45.455 0.00 0.00 0.00 4.41
616 625 3.643320 TCTTCTCTCAGACCTTTCAGCAA 59.357 43.478 0.00 0.00 0.00 3.91
617 626 4.285517 TCTTCTCTCAGACCTTTCAGCAAT 59.714 41.667 0.00 0.00 0.00 3.56
618 627 3.935315 TCTCTCAGACCTTTCAGCAATG 58.065 45.455 0.00 0.00 0.00 2.82
619 628 3.326006 TCTCTCAGACCTTTCAGCAATGT 59.674 43.478 0.00 0.00 0.00 2.71
620 629 3.668447 TCTCAGACCTTTCAGCAATGTC 58.332 45.455 0.00 0.00 31.77 3.06
621 630 2.746362 CTCAGACCTTTCAGCAATGTCC 59.254 50.000 0.00 0.00 31.94 4.02
622 631 1.466167 CAGACCTTTCAGCAATGTCCG 59.534 52.381 0.00 0.00 31.94 4.79
623 632 1.072331 AGACCTTTCAGCAATGTCCGT 59.928 47.619 0.00 0.00 31.94 4.69
624 633 1.880027 GACCTTTCAGCAATGTCCGTT 59.120 47.619 0.00 0.00 0.00 4.44
625 634 1.880027 ACCTTTCAGCAATGTCCGTTC 59.120 47.619 0.00 0.00 0.00 3.95
626 635 1.879380 CCTTTCAGCAATGTCCGTTCA 59.121 47.619 0.00 0.00 0.00 3.18
627 636 2.095567 CCTTTCAGCAATGTCCGTTCAG 60.096 50.000 0.00 0.00 0.00 3.02
628 637 2.254546 TTCAGCAATGTCCGTTCAGT 57.745 45.000 0.00 0.00 0.00 3.41
629 638 3.394674 TTCAGCAATGTCCGTTCAGTA 57.605 42.857 0.00 0.00 0.00 2.74
630 639 2.959516 TCAGCAATGTCCGTTCAGTAG 58.040 47.619 0.00 0.00 0.00 2.57
631 640 2.560981 TCAGCAATGTCCGTTCAGTAGA 59.439 45.455 0.00 0.00 0.00 2.59
632 641 3.006430 TCAGCAATGTCCGTTCAGTAGAA 59.994 43.478 0.00 0.00 0.00 2.10
633 642 3.369147 CAGCAATGTCCGTTCAGTAGAAG 59.631 47.826 0.00 0.00 33.63 2.85
634 643 3.258372 AGCAATGTCCGTTCAGTAGAAGA 59.742 43.478 0.00 0.00 33.63 2.87
635 644 3.994392 GCAATGTCCGTTCAGTAGAAGAA 59.006 43.478 0.00 0.00 33.63 2.52
636 645 4.092091 GCAATGTCCGTTCAGTAGAAGAAG 59.908 45.833 0.00 0.00 33.63 2.85
637 646 5.470368 CAATGTCCGTTCAGTAGAAGAAGA 58.530 41.667 0.00 0.00 33.63 2.87
638 647 5.923733 ATGTCCGTTCAGTAGAAGAAGAT 57.076 39.130 0.00 0.00 33.63 2.40
639 648 5.060662 TGTCCGTTCAGTAGAAGAAGATG 57.939 43.478 0.00 0.00 33.63 2.90
640 649 4.523173 TGTCCGTTCAGTAGAAGAAGATGT 59.477 41.667 0.00 0.00 33.63 3.06
641 650 5.010719 TGTCCGTTCAGTAGAAGAAGATGTT 59.989 40.000 0.00 0.00 33.63 2.71
642 651 5.573669 GTCCGTTCAGTAGAAGAAGATGTTC 59.426 44.000 0.00 0.00 33.63 3.18
643 652 4.865365 CCGTTCAGTAGAAGAAGATGTTCC 59.135 45.833 0.00 0.00 33.63 3.62
644 653 5.336849 CCGTTCAGTAGAAGAAGATGTTCCT 60.337 44.000 0.00 0.00 33.63 3.36
645 654 6.127703 CCGTTCAGTAGAAGAAGATGTTCCTA 60.128 42.308 0.00 0.00 33.63 2.94
646 655 7.416890 CCGTTCAGTAGAAGAAGATGTTCCTAT 60.417 40.741 0.00 0.00 33.63 2.57
647 656 7.646130 CGTTCAGTAGAAGAAGATGTTCCTATC 59.354 40.741 0.00 0.00 33.63 2.08
648 657 7.265647 TCAGTAGAAGAAGATGTTCCTATCG 57.734 40.000 0.00 0.00 32.48 2.92
649 658 7.054751 TCAGTAGAAGAAGATGTTCCTATCGA 58.945 38.462 0.00 0.00 32.48 3.59
650 659 7.012515 TCAGTAGAAGAAGATGTTCCTATCGAC 59.987 40.741 0.00 3.07 32.48 4.20
651 660 7.012894 CAGTAGAAGAAGATGTTCCTATCGACT 59.987 40.741 0.00 5.11 31.93 4.18
652 661 8.212312 AGTAGAAGAAGATGTTCCTATCGACTA 58.788 37.037 11.69 0.00 30.98 2.59
653 662 7.266922 AGAAGAAGATGTTCCTATCGACTAC 57.733 40.000 0.00 0.00 32.48 2.73
654 663 5.676532 AGAAGATGTTCCTATCGACTACG 57.323 43.478 0.00 0.00 35.59 3.51
655 664 5.366460 AGAAGATGTTCCTATCGACTACGA 58.634 41.667 0.00 0.00 42.17 3.43
656 665 5.821470 AGAAGATGTTCCTATCGACTACGAA 59.179 40.000 0.00 0.00 41.69 3.85
657 666 6.318144 AGAAGATGTTCCTATCGACTACGAAA 59.682 38.462 0.00 0.00 41.69 3.46
658 667 7.467539 AGAAGATGTTCCTATCGACTACGAAAG 60.468 40.741 0.00 0.00 41.69 2.62
670 679 2.248140 CGAAAGCGTTTGCAGCGA 59.752 55.556 15.36 0.00 46.23 4.93
671 680 1.154413 CGAAAGCGTTTGCAGCGAT 60.154 52.632 15.36 7.25 46.23 4.58
672 681 0.725784 CGAAAGCGTTTGCAGCGATT 60.726 50.000 15.36 12.56 46.23 3.34
673 682 3.568093 AAAGCGTTTGCAGCGATTT 57.432 42.105 18.51 18.51 46.23 2.17
674 683 1.408422 AAAGCGTTTGCAGCGATTTC 58.592 45.000 18.51 2.74 43.00 2.17
675 684 0.310543 AAGCGTTTGCAGCGATTTCA 59.689 45.000 15.36 0.00 46.23 2.69
676 685 0.523072 AGCGTTTGCAGCGATTTCAT 59.477 45.000 15.36 0.00 46.23 2.57
677 686 0.909843 GCGTTTGCAGCGATTTCATC 59.090 50.000 15.36 0.00 42.15 2.92
678 687 1.728825 GCGTTTGCAGCGATTTCATCA 60.729 47.619 15.36 0.00 42.15 3.07
679 688 2.583739 CGTTTGCAGCGATTTCATCAA 58.416 42.857 6.89 0.00 0.00 2.57
680 689 3.173599 CGTTTGCAGCGATTTCATCAAT 58.826 40.909 6.89 0.00 0.00 2.57
681 690 3.239026 CGTTTGCAGCGATTTCATCAATC 59.761 43.478 6.89 0.00 38.41 2.67
682 691 3.425577 TTGCAGCGATTTCATCAATCC 57.574 42.857 0.00 0.00 38.54 3.01
683 692 1.677576 TGCAGCGATTTCATCAATCCC 59.322 47.619 0.00 0.00 38.54 3.85
684 693 1.677576 GCAGCGATTTCATCAATCCCA 59.322 47.619 0.00 0.00 38.54 4.37
685 694 2.099592 GCAGCGATTTCATCAATCCCAA 59.900 45.455 0.00 0.00 38.54 4.12
686 695 3.429272 GCAGCGATTTCATCAATCCCAAA 60.429 43.478 0.00 0.00 38.54 3.28
687 696 4.746729 CAGCGATTTCATCAATCCCAAAA 58.253 39.130 0.00 0.00 38.54 2.44
688 697 5.353938 CAGCGATTTCATCAATCCCAAAAT 58.646 37.500 0.00 0.00 38.54 1.82
689 698 5.233476 CAGCGATTTCATCAATCCCAAAATG 59.767 40.000 0.00 0.00 38.54 2.32
690 699 5.127519 AGCGATTTCATCAATCCCAAAATGA 59.872 36.000 0.00 0.00 38.54 2.57
691 700 5.987347 GCGATTTCATCAATCCCAAAATGAT 59.013 36.000 0.00 0.00 38.54 2.45
693 702 6.982141 CGATTTCATCAATCCCAAAATGATGT 59.018 34.615 12.98 0.00 46.61 3.06
694 703 7.042992 CGATTTCATCAATCCCAAAATGATGTG 60.043 37.037 12.98 0.00 46.61 3.21
695 704 6.608539 TTCATCAATCCCAAAATGATGTGT 57.391 33.333 12.98 0.00 46.61 3.72
696 705 7.715266 TTCATCAATCCCAAAATGATGTGTA 57.285 32.000 12.98 0.98 46.61 2.90
697 706 7.337480 TCATCAATCCCAAAATGATGTGTAG 57.663 36.000 12.98 0.00 46.61 2.74
698 707 5.581126 TCAATCCCAAAATGATGTGTAGC 57.419 39.130 0.00 0.00 0.00 3.58
699 708 4.402155 TCAATCCCAAAATGATGTGTAGCC 59.598 41.667 0.00 0.00 0.00 3.93
700 709 3.737559 TCCCAAAATGATGTGTAGCCT 57.262 42.857 0.00 0.00 0.00 4.58
701 710 3.620488 TCCCAAAATGATGTGTAGCCTC 58.380 45.455 0.00 0.00 0.00 4.70
702 711 3.266772 TCCCAAAATGATGTGTAGCCTCT 59.733 43.478 0.00 0.00 0.00 3.69
703 712 3.379372 CCCAAAATGATGTGTAGCCTCTG 59.621 47.826 0.00 0.00 0.00 3.35
704 713 4.012374 CCAAAATGATGTGTAGCCTCTGT 58.988 43.478 0.00 0.00 0.00 3.41
705 714 4.095483 CCAAAATGATGTGTAGCCTCTGTC 59.905 45.833 0.00 0.00 0.00 3.51
706 715 4.833478 AAATGATGTGTAGCCTCTGTCT 57.167 40.909 0.00 0.00 0.00 3.41
707 716 4.399004 AATGATGTGTAGCCTCTGTCTC 57.601 45.455 0.00 0.00 0.00 3.36
708 717 3.093057 TGATGTGTAGCCTCTGTCTCT 57.907 47.619 0.00 0.00 0.00 3.10
709 718 3.020274 TGATGTGTAGCCTCTGTCTCTC 58.980 50.000 0.00 0.00 0.00 3.20
710 719 2.586648 TGTGTAGCCTCTGTCTCTCA 57.413 50.000 0.00 0.00 0.00 3.27
711 720 2.876581 TGTGTAGCCTCTGTCTCTCAA 58.123 47.619 0.00 0.00 0.00 3.02
712 721 3.230976 TGTGTAGCCTCTGTCTCTCAAA 58.769 45.455 0.00 0.00 0.00 2.69
713 722 3.256879 TGTGTAGCCTCTGTCTCTCAAAG 59.743 47.826 0.00 0.00 0.00 2.77
714 723 3.508012 GTGTAGCCTCTGTCTCTCAAAGA 59.492 47.826 0.00 0.00 0.00 2.52
715 724 4.159506 GTGTAGCCTCTGTCTCTCAAAGAT 59.840 45.833 0.00 0.00 36.11 2.40
716 725 3.891422 AGCCTCTGTCTCTCAAAGATG 57.109 47.619 0.00 0.00 36.11 2.90
717 726 2.093553 AGCCTCTGTCTCTCAAAGATGC 60.094 50.000 0.00 0.00 36.11 3.91
718 727 2.093553 GCCTCTGTCTCTCAAAGATGCT 60.094 50.000 0.00 0.00 36.11 3.79
719 728 3.784338 CCTCTGTCTCTCAAAGATGCTC 58.216 50.000 0.00 0.00 36.11 4.26
720 729 3.437428 CTCTGTCTCTCAAAGATGCTCG 58.563 50.000 0.00 0.00 36.11 5.03
721 730 2.822561 TCTGTCTCTCAAAGATGCTCGT 59.177 45.455 0.00 0.00 36.11 4.18
722 731 4.010349 TCTGTCTCTCAAAGATGCTCGTA 58.990 43.478 0.00 0.00 36.11 3.43
723 732 4.095632 TCTGTCTCTCAAAGATGCTCGTAG 59.904 45.833 0.00 0.00 36.11 3.51
724 733 3.129462 TGTCTCTCAAAGATGCTCGTAGG 59.871 47.826 0.00 0.00 36.11 3.18
725 734 2.690497 TCTCTCAAAGATGCTCGTAGGG 59.310 50.000 0.00 0.00 0.00 3.53
726 735 2.690497 CTCTCAAAGATGCTCGTAGGGA 59.310 50.000 0.00 0.00 0.00 4.20
727 736 3.300388 TCTCAAAGATGCTCGTAGGGAT 58.700 45.455 0.00 0.00 0.00 3.85
728 737 3.068732 TCTCAAAGATGCTCGTAGGGATG 59.931 47.826 0.00 0.00 0.00 3.51
729 738 2.103094 TCAAAGATGCTCGTAGGGATGG 59.897 50.000 0.00 0.00 0.00 3.51
730 739 2.088104 AAGATGCTCGTAGGGATGGA 57.912 50.000 0.00 0.00 0.00 3.41
731 740 1.626686 AGATGCTCGTAGGGATGGAG 58.373 55.000 0.00 0.00 0.00 3.86
733 742 2.336809 GCTCGTAGGGATGGAGCG 59.663 66.667 0.00 0.00 43.10 5.03
734 743 2.491022 GCTCGTAGGGATGGAGCGT 61.491 63.158 0.00 0.00 43.10 5.07
735 744 1.360551 CTCGTAGGGATGGAGCGTG 59.639 63.158 0.00 0.00 0.00 5.34
736 745 1.379443 TCGTAGGGATGGAGCGTGT 60.379 57.895 0.00 0.00 0.00 4.49
737 746 1.226974 CGTAGGGATGGAGCGTGTG 60.227 63.158 0.00 0.00 0.00 3.82
738 747 1.898154 GTAGGGATGGAGCGTGTGT 59.102 57.895 0.00 0.00 0.00 3.72
739 748 1.108776 GTAGGGATGGAGCGTGTGTA 58.891 55.000 0.00 0.00 0.00 2.90
740 749 1.108776 TAGGGATGGAGCGTGTGTAC 58.891 55.000 0.00 0.00 0.00 2.90
753 762 4.288132 CGTGTGTACGTGTGTTCATAAG 57.712 45.455 0.00 0.00 44.99 1.73
754 763 3.976306 CGTGTGTACGTGTGTTCATAAGA 59.024 43.478 0.00 0.00 44.99 2.10
761 770 4.245660 ACGTGTGTTCATAAGATGTGAGG 58.754 43.478 0.00 0.00 0.00 3.86
768 777 6.258727 GTGTTCATAAGATGTGAGGGTATGTG 59.741 42.308 0.00 0.00 0.00 3.21
770 779 4.655649 TCATAAGATGTGAGGGTATGTGCT 59.344 41.667 0.00 0.00 0.00 4.40
775 784 6.102897 AGATGTGAGGGTATGTGCTTATAC 57.897 41.667 3.28 3.28 33.71 1.47
777 786 5.887214 TGTGAGGGTATGTGCTTATACAT 57.113 39.130 11.32 0.00 43.34 2.29
787 796 4.183865 TGTGCTTATACATGAGTGTCTGC 58.816 43.478 0.00 0.00 39.77 4.26
791 800 4.734989 GCTTATACATGAGTGTCTGCGTCT 60.735 45.833 0.00 0.00 39.77 4.18
794 803 1.202582 ACATGAGTGTCTGCGTCTACC 59.797 52.381 0.00 0.00 31.41 3.18
795 804 1.202348 CATGAGTGTCTGCGTCTACCA 59.798 52.381 0.00 0.00 0.00 3.25
801 810 3.390521 CTGCGTCTACCAGGCCCA 61.391 66.667 0.00 0.00 34.78 5.36
832 841 1.922545 GCATTTTTGGCTGATCTTCGC 59.077 47.619 0.00 0.00 0.00 4.70
837 846 0.737367 TTGGCTGATCTTCGCTCGTG 60.737 55.000 0.00 0.00 0.00 4.35
861 871 2.038689 AGATCGGACGAGTAGCCTGATA 59.961 50.000 0.00 0.00 0.00 2.15
909 919 3.130516 CGATAGGAAGCACAGGTCACTAA 59.869 47.826 0.00 0.00 0.00 2.24
929 939 2.726180 CGATCCGTAGCGCTTCCG 60.726 66.667 18.68 18.77 37.57 4.30
1090 1106 4.778415 CCCGCGTGAGTCACCGAG 62.778 72.222 25.92 18.33 32.71 4.63
1102 1119 0.251653 TCACCGAGCCACCTTCTAGT 60.252 55.000 0.00 0.00 0.00 2.57
1224 1250 1.819632 GCCGCCCACAGATTCGATT 60.820 57.895 0.00 0.00 0.00 3.34
1248 1274 2.224769 TGTTGGACCTCTTAGGGCTTTG 60.225 50.000 0.00 0.00 45.15 2.77
1253 1279 1.073923 ACCTCTTAGGGCTTTGTGGTG 59.926 52.381 0.00 0.00 40.58 4.17
1264 1290 0.184933 TTTGTGGTGGTTCTGGGAGG 59.815 55.000 0.00 0.00 0.00 4.30
1418 1444 1.213013 CTCGAGTCCAGGGTTCGTG 59.787 63.158 3.62 7.12 35.90 4.35
1471 1497 5.090139 CCCATCCAGTAGAGATTATCCTGT 58.910 45.833 0.00 0.00 0.00 4.00
1515 1541 5.144159 TGGGGCCATTTAAACCATACATA 57.856 39.130 4.39 0.00 0.00 2.29
1565 1591 6.835819 ACTGAGTAGACATAAGCAACACTA 57.164 37.500 0.00 0.00 0.00 2.74
1664 1690 4.634199 ACTGGGAGTCATTGCAATTTTTG 58.366 39.130 9.83 0.00 0.00 2.44
1666 1692 5.033589 TGGGAGTCATTGCAATTTTTGTT 57.966 34.783 9.83 0.00 0.00 2.83
1711 1737 6.165700 AGTGCCTTGAAAATGAAAATGAGT 57.834 33.333 0.00 0.00 0.00 3.41
1800 1826 0.173481 TGAGACAGTACGAGGCATGC 59.827 55.000 9.90 9.90 0.00 4.06
1851 1877 4.202377 TGGGCTGTTGTTACTGCTAAGTTA 60.202 41.667 7.02 0.00 45.44 2.24
1869 1895 9.515020 GCTAAGTTAAATTTGCTGCATTGTATA 57.485 29.630 13.49 0.00 0.00 1.47
1898 1924 8.821147 TCAGTATAAAACTTCGCTGAACTTAA 57.179 30.769 0.00 0.00 35.76 1.85
1912 1938 7.327761 TCGCTGAACTTAAAGTCTGTGTAATAC 59.672 37.037 0.00 0.00 0.00 1.89
1914 1940 8.436200 GCTGAACTTAAAGTCTGTGTAATACTG 58.564 37.037 0.00 0.00 0.00 2.74
1938 1964 2.029739 CACATGTTCATGCAAGGCTTCA 60.030 45.455 12.00 0.00 0.00 3.02
1940 1966 3.119245 ACATGTTCATGCAAGGCTTCATC 60.119 43.478 12.00 0.00 0.00 2.92
1943 1969 2.429610 GTTCATGCAAGGCTTCATCCAT 59.570 45.455 0.00 0.00 0.00 3.41
2024 2054 6.703607 GTGGAAGATGATAGATGTACCACTTG 59.296 42.308 0.00 0.00 41.03 3.16
2158 2188 2.686235 TGCCACATTACTTTTGCATGC 58.314 42.857 11.82 11.82 0.00 4.06
2170 2200 5.302360 ACTTTTGCATGCATGAAGAATGTT 58.698 33.333 33.39 18.29 38.65 2.71
2179 2209 4.202233 TGCATGAAGAATGTTGGCTTGAAA 60.202 37.500 0.00 0.00 38.65 2.69
2369 2399 3.440228 GAAGTTGCTGCGGTAAAACAAA 58.560 40.909 0.00 0.00 0.00 2.83
2599 2629 9.679661 TGTAATATGGCTTCATTAGTTTCAGAA 57.320 29.630 0.00 0.00 32.59 3.02
2979 3009 6.003326 TGATTTCAGATAAGCAGGTTGTTCA 58.997 36.000 0.00 0.00 0.00 3.18
2996 3026 8.157476 AGGTTGTTCAGTTAAGATGTTCATAGT 58.843 33.333 0.00 0.00 0.00 2.12
3032 3062 7.006509 TCTCTGGAACTCCAAAATCTCAAATT 58.993 34.615 0.00 0.00 46.97 1.82
3143 3173 0.249120 TGGGCATGAGGTAAGACACG 59.751 55.000 0.00 0.00 0.00 4.49
3198 3228 9.050601 GTAATCAGTCTTGCAATTCTTAGCTAT 57.949 33.333 0.00 0.00 0.00 2.97
3452 3482 4.957684 AGTCCCTCCTATCCAAAATACG 57.042 45.455 0.00 0.00 0.00 3.06
3700 3731 5.026121 TCAAGGGAGTACTCATCTGTGAAT 58.974 41.667 23.91 3.53 33.05 2.57
3818 3849 7.096230 CGTTGTTTCCAACCACATAGAAATTTC 60.096 37.037 10.33 10.33 46.71 2.17
3828 3859 7.128077 ACCACATAGAAATTTCATCCTTGGAT 58.872 34.615 19.99 0.00 0.00 3.41
3831 3862 9.347240 CACATAGAAATTTCATCCTTGGATAGT 57.653 33.333 19.99 0.00 0.00 2.12
3966 3997 8.635765 TTTTTAATCTCTTCTACAGCCAATGT 57.364 30.769 0.00 0.00 46.45 2.71
3982 4013 9.019656 ACAGCCAATGTAAATGTAGAATGTAAA 57.980 29.630 0.00 0.00 41.60 2.01
4027 4058 0.763035 AAGTACAAAGCCCACCGTCT 59.237 50.000 0.00 0.00 0.00 4.18
4046 4077 4.142513 CGTCTCTTAAGGTAAGTAGCCGTT 60.143 45.833 1.85 0.00 37.10 4.44
4070 4101 6.291648 TGATTCTGTTGATTCTCTAGCACT 57.708 37.500 0.00 0.00 0.00 4.40
4182 4214 6.312672 ACCTGTAACTGCAAATGTTGAAAAAC 59.687 34.615 0.35 0.00 0.00 2.43
4270 4303 5.981174 TGTTTTCGTGTGCTATTCAACTAC 58.019 37.500 0.00 0.00 0.00 2.73
4307 4340 6.146760 TCAGGAGAATAAGGAGAATAAGCCT 58.853 40.000 0.00 0.00 35.61 4.58
4367 4401 4.141597 TGGATAACATTTGCTACCGATGGA 60.142 41.667 0.00 0.00 0.00 3.41
4486 4520 2.541383 CGAACAGCAAACACATTCTGCA 60.541 45.455 0.00 0.00 38.58 4.41
4661 4708 4.398319 AGTTAGACACAAAAGATGGGGTG 58.602 43.478 0.00 0.00 36.45 4.61
4674 4721 2.143419 GGGGTGGATGGAGCGAGAT 61.143 63.158 0.00 0.00 0.00 2.75
4727 4775 3.937814 TGTTGTTGTCACACTTCTCTGT 58.062 40.909 0.00 0.00 30.32 3.41
4767 4817 5.414789 AGAAAACTCCTAGAGCTCTTTCC 57.585 43.478 23.84 5.57 31.91 3.13
4784 4834 8.588472 AGCTCTTTCCTTTTAAGCATACAAAAT 58.412 29.630 0.00 0.00 35.42 1.82
4806 4856 6.672946 ATCTCAGATATCTGTATCCCTCCT 57.327 41.667 27.80 5.61 44.12 3.69
4813 4863 1.006758 TCTGTATCCCTCCTTGTCCGT 59.993 52.381 0.00 0.00 0.00 4.69
4828 4878 2.461110 CCGTCATGGCCAGCGTAAC 61.461 63.158 13.05 3.62 0.00 2.50
4852 4902 1.288350 CTGCTGCTCCAGAAATCGAG 58.712 55.000 0.00 0.00 34.77 4.04
4865 4915 0.176680 AATCGAGCTCGGCATGTTCT 59.823 50.000 33.98 5.17 40.29 3.01
4890 4940 2.353958 CATGCTGTGGCTCCACCT 59.646 61.111 15.76 0.00 45.63 4.00
4899 4949 1.134371 GTGGCTCCACCTTATGAGTCC 60.134 57.143 7.82 0.00 40.79 3.85
4900 4950 1.273838 TGGCTCCACCTTATGAGTCCT 60.274 52.381 0.00 0.00 40.22 3.85
4901 4951 1.840635 GGCTCCACCTTATGAGTCCTT 59.159 52.381 0.00 0.00 34.51 3.36
4969 7601 0.834612 TTCAGGTGAACCAGACCGTT 59.165 50.000 1.62 0.00 38.64 4.44
5016 7650 8.870075 ATTTATTAATAGCACCCTCTTGGATC 57.130 34.615 0.00 0.00 38.00 3.36
5017 7651 4.706842 TTAATAGCACCCTCTTGGATCC 57.293 45.455 4.20 4.20 38.00 3.36
5026 7660 1.611673 CCTCTTGGATCCGTTTGCACT 60.612 52.381 7.39 0.00 34.57 4.40
5029 7663 1.523154 TTGGATCCGTTTGCACTGCC 61.523 55.000 7.39 0.00 0.00 4.85
5031 7665 2.281484 ATCCGTTTGCACTGCCGT 60.281 55.556 0.00 0.00 0.00 5.68
5032 7666 2.513065 GATCCGTTTGCACTGCCGTG 62.513 60.000 3.57 3.57 44.07 4.94
5062 7696 0.252467 CAAGGTGACCCCCTCTCTCT 60.252 60.000 0.00 0.00 32.13 3.10
5136 7770 4.089493 GGCGAAGGAAAACGAAATTTTAGC 59.911 41.667 0.00 0.00 40.73 3.09
5252 7897 0.394565 GGACTTGTGAGAGTGCCACT 59.605 55.000 0.00 0.00 35.66 4.00
5270 7915 3.746492 CCACTGTAGCTTATTAATCCCGC 59.254 47.826 0.00 0.00 0.00 6.13
5283 7928 4.124351 CCCGCCAAGTGCAGCATG 62.124 66.667 0.00 0.00 41.33 4.06
5315 7961 1.349688 AGCGTATCCAGGAAACAACCA 59.650 47.619 0.00 0.00 0.00 3.67
5326 7972 5.131142 CCAGGAAACAACCAGGAGAGTATAT 59.869 44.000 0.00 0.00 38.63 0.86
5329 7975 6.049790 GGAAACAACCAGGAGAGTATATGTC 58.950 44.000 0.00 0.00 0.00 3.06
5331 7977 6.472686 AACAACCAGGAGAGTATATGTCTC 57.527 41.667 0.00 7.94 39.92 3.36
5342 7988 8.271312 GAGAGTATATGTCTCCTATGTGGTAC 57.729 42.308 5.87 0.00 35.35 3.34
5343 7989 6.879993 AGAGTATATGTCTCCTATGTGGTACG 59.120 42.308 6.25 0.00 37.07 3.67
5344 7990 5.944599 AGTATATGTCTCCTATGTGGTACGG 59.055 44.000 0.00 0.00 37.07 4.02
5345 7991 2.519771 TGTCTCCTATGTGGTACGGT 57.480 50.000 0.00 0.00 37.07 4.83
5361 8007 3.780624 GGTACGATGGCTTCCATGT 57.219 52.632 2.64 4.96 45.26 3.21
5389 9385 1.492176 AGATACCCATGTGCCAAGGAG 59.508 52.381 0.00 0.00 0.00 3.69
5448 9452 0.179181 ATCGACGACGTACGCAACAT 60.179 50.000 16.72 0.00 46.94 2.71
5449 9453 1.061262 TCGACGACGTACGCAACATG 61.061 55.000 16.72 1.23 46.94 3.21
5476 9480 0.388649 AGTAGCTCTTTGGCGTGTCG 60.389 55.000 0.00 0.00 37.29 4.35
5477 9481 1.080093 TAGCTCTTTGGCGTGTCGG 60.080 57.895 0.00 0.00 37.29 4.79
5478 9482 1.529152 TAGCTCTTTGGCGTGTCGGA 61.529 55.000 0.00 0.00 37.29 4.55
5479 9483 2.383527 GCTCTTTGGCGTGTCGGAG 61.384 63.158 0.00 0.00 0.00 4.63
5480 9484 2.357034 TCTTTGGCGTGTCGGAGC 60.357 61.111 0.00 0.00 0.00 4.70
5486 9490 4.699522 GCGTGTCGGAGCCCCTTT 62.700 66.667 0.00 0.00 0.00 3.11
5487 9491 2.434359 CGTGTCGGAGCCCCTTTC 60.434 66.667 0.00 0.00 0.00 2.62
5488 9492 2.747686 GTGTCGGAGCCCCTTTCA 59.252 61.111 0.00 0.00 0.00 2.69
5489 9493 1.376037 GTGTCGGAGCCCCTTTCAG 60.376 63.158 0.00 0.00 0.00 3.02
5490 9494 2.269241 GTCGGAGCCCCTTTCAGG 59.731 66.667 0.00 0.00 34.30 3.86
5491 9495 2.121832 TCGGAGCCCCTTTCAGGA 59.878 61.111 0.00 0.00 37.67 3.86
5492 9496 1.537889 TCGGAGCCCCTTTCAGGAA 60.538 57.895 0.00 0.00 37.67 3.36
5493 9497 0.914417 TCGGAGCCCCTTTCAGGAAT 60.914 55.000 0.00 0.00 37.67 3.01
5494 9498 0.749454 CGGAGCCCCTTTCAGGAATG 60.749 60.000 0.00 0.00 37.67 2.67
5495 9499 0.625849 GGAGCCCCTTTCAGGAATGA 59.374 55.000 0.00 0.00 37.67 2.57
5496 9500 1.683319 GGAGCCCCTTTCAGGAATGAC 60.683 57.143 0.00 0.00 37.67 3.06
5497 9501 1.283321 GAGCCCCTTTCAGGAATGACT 59.717 52.381 0.00 0.00 37.67 3.41
5498 9502 1.005215 AGCCCCTTTCAGGAATGACTG 59.995 52.381 0.00 0.00 37.67 3.51
5499 9503 1.957113 GCCCCTTTCAGGAATGACTGG 60.957 57.143 0.00 0.00 37.67 4.00
5500 9504 1.467920 CCCTTTCAGGAATGACTGGC 58.532 55.000 0.00 0.00 37.67 4.85
5501 9505 1.272092 CCCTTTCAGGAATGACTGGCA 60.272 52.381 0.00 0.00 37.67 4.92
5502 9506 2.089980 CCTTTCAGGAATGACTGGCAG 58.910 52.381 14.16 14.16 37.67 4.85
5503 9507 2.089980 CTTTCAGGAATGACTGGCAGG 58.910 52.381 20.34 0.58 38.98 4.85
5504 9508 0.329261 TTCAGGAATGACTGGCAGGG 59.671 55.000 20.34 0.00 38.98 4.45
5505 9509 0.842030 TCAGGAATGACTGGCAGGGT 60.842 55.000 20.34 0.00 38.98 4.34
5506 9510 0.679002 CAGGAATGACTGGCAGGGTG 60.679 60.000 20.34 1.34 34.84 4.61
5507 9511 1.379044 GGAATGACTGGCAGGGTGG 60.379 63.158 20.34 0.00 0.00 4.61
5508 9512 1.380302 GAATGACTGGCAGGGTGGT 59.620 57.895 20.34 0.00 0.00 4.16
5509 9513 0.962356 GAATGACTGGCAGGGTGGTG 60.962 60.000 20.34 0.00 0.00 4.17
5510 9514 3.574074 ATGACTGGCAGGGTGGTGC 62.574 63.158 20.34 0.00 43.19 5.01
5511 9515 3.958860 GACTGGCAGGGTGGTGCT 61.959 66.667 20.34 0.00 43.45 4.40
5512 9516 3.909086 GACTGGCAGGGTGGTGCTC 62.909 68.421 20.34 0.20 43.45 4.26
5513 9517 3.957586 CTGGCAGGGTGGTGCTCA 61.958 66.667 6.61 0.00 43.45 4.26
5514 9518 3.259314 TGGCAGGGTGGTGCTCAT 61.259 61.111 0.00 0.00 43.45 2.90
5515 9519 2.753043 GGCAGGGTGGTGCTCATG 60.753 66.667 0.00 0.00 43.45 3.07
5516 9520 2.352422 GCAGGGTGGTGCTCATGA 59.648 61.111 0.00 0.00 40.54 3.07
5517 9521 2.042831 GCAGGGTGGTGCTCATGAC 61.043 63.158 0.00 0.00 40.54 3.06
5518 9522 1.377725 CAGGGTGGTGCTCATGACC 60.378 63.158 0.00 0.00 0.00 4.02
5519 9523 1.539869 AGGGTGGTGCTCATGACCT 60.540 57.895 3.91 0.00 34.26 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.815095 TCGCTGGCTCTTTACGATCA 59.185 50.000 0.00 0.00 0.00 2.92
123 124 0.868406 GAACAAGCTTGGTCTGACGG 59.132 55.000 32.62 5.20 41.62 4.79
172 173 4.454728 TTCAAATTTGAGGCTATGTGGC 57.545 40.909 19.64 0.00 38.61 5.01
196 197 2.103094 CGGATATCTCCTGTCCAGCAAA 59.897 50.000 2.05 0.00 39.65 3.68
250 251 3.779444 TCTTCTGATCACTACCCTGTGT 58.221 45.455 0.00 0.00 38.90 3.72
370 371 2.825532 ACTTGGTGCAACAAACAAGAGT 59.174 40.909 19.51 8.75 42.07 3.24
475 484 3.130633 CTCAAGACGAACATTGTGGTCA 58.869 45.455 18.15 3.27 32.48 4.02
492 501 2.275134 TCAATGAGGTGCTTGCTCAA 57.725 45.000 0.00 0.00 0.00 3.02
533 542 4.028490 TGGGATGGACCGTGCCAC 62.028 66.667 22.29 0.00 41.56 5.01
534 543 4.028490 GTGGGATGGACCGTGCCA 62.028 66.667 22.29 22.29 38.51 4.92
535 544 1.978455 TATGTGGGATGGACCGTGCC 61.978 60.000 17.16 17.16 40.11 5.01
536 545 0.532862 CTATGTGGGATGGACCGTGC 60.533 60.000 0.00 0.00 40.11 5.34
537 546 0.106708 CCTATGTGGGATGGACCGTG 59.893 60.000 0.00 0.00 40.11 4.94
538 547 0.326238 ACCTATGTGGGATGGACCGT 60.326 55.000 0.00 0.00 41.11 4.83
539 548 0.837272 AACCTATGTGGGATGGACCG 59.163 55.000 0.00 0.00 41.11 4.79
540 549 1.750682 GCAACCTATGTGGGATGGACC 60.751 57.143 0.00 0.00 41.11 4.46
603 612 1.072331 ACGGACATTGCTGAAAGGTCT 59.928 47.619 12.47 0.00 46.44 3.85
604 613 1.523758 ACGGACATTGCTGAAAGGTC 58.476 50.000 4.60 4.60 46.49 3.85
605 614 1.880027 GAACGGACATTGCTGAAAGGT 59.120 47.619 0.00 0.00 34.93 3.50
606 615 1.879380 TGAACGGACATTGCTGAAAGG 59.121 47.619 0.00 0.00 0.00 3.11
607 616 2.549754 ACTGAACGGACATTGCTGAAAG 59.450 45.455 0.00 0.00 0.00 2.62
608 617 2.571212 ACTGAACGGACATTGCTGAAA 58.429 42.857 0.00 0.00 0.00 2.69
609 618 2.254546 ACTGAACGGACATTGCTGAA 57.745 45.000 0.00 0.00 0.00 3.02
610 619 2.560981 TCTACTGAACGGACATTGCTGA 59.439 45.455 0.00 0.00 0.00 4.26
611 620 2.959516 TCTACTGAACGGACATTGCTG 58.040 47.619 0.00 0.00 0.00 4.41
612 621 3.258372 TCTTCTACTGAACGGACATTGCT 59.742 43.478 0.00 0.00 0.00 3.91
613 622 3.585862 TCTTCTACTGAACGGACATTGC 58.414 45.455 0.00 0.00 0.00 3.56
614 623 5.470368 TCTTCTTCTACTGAACGGACATTG 58.530 41.667 0.00 0.00 0.00 2.82
615 624 5.723672 TCTTCTTCTACTGAACGGACATT 57.276 39.130 0.00 0.00 0.00 2.71
616 625 5.186021 ACATCTTCTTCTACTGAACGGACAT 59.814 40.000 0.00 0.00 0.00 3.06
617 626 4.523173 ACATCTTCTTCTACTGAACGGACA 59.477 41.667 0.00 0.00 0.00 4.02
618 627 5.061920 ACATCTTCTTCTACTGAACGGAC 57.938 43.478 0.00 0.00 0.00 4.79
619 628 5.336531 GGAACATCTTCTTCTACTGAACGGA 60.337 44.000 0.00 0.00 0.00 4.69
620 629 4.865365 GGAACATCTTCTTCTACTGAACGG 59.135 45.833 0.00 0.00 0.00 4.44
621 630 5.715070 AGGAACATCTTCTTCTACTGAACG 58.285 41.667 0.00 0.00 0.00 3.95
622 631 7.646130 CGATAGGAACATCTTCTTCTACTGAAC 59.354 40.741 0.00 0.00 0.00 3.18
623 632 7.556635 TCGATAGGAACATCTTCTTCTACTGAA 59.443 37.037 0.00 0.00 0.00 3.02
624 633 7.012515 GTCGATAGGAACATCTTCTTCTACTGA 59.987 40.741 0.00 0.00 0.00 3.41
625 634 7.012894 AGTCGATAGGAACATCTTCTTCTACTG 59.987 40.741 0.00 0.00 0.00 2.74
626 635 7.057894 AGTCGATAGGAACATCTTCTTCTACT 58.942 38.462 0.00 0.00 0.00 2.57
627 636 7.266922 AGTCGATAGGAACATCTTCTTCTAC 57.733 40.000 0.00 0.00 0.00 2.59
628 637 7.171167 CGTAGTCGATAGGAACATCTTCTTCTA 59.829 40.741 0.00 0.00 39.71 2.10
629 638 6.017770 CGTAGTCGATAGGAACATCTTCTTCT 60.018 42.308 0.00 0.00 39.71 2.85
630 639 6.018098 TCGTAGTCGATAGGAACATCTTCTTC 60.018 42.308 0.00 0.00 41.35 2.87
631 640 5.821470 TCGTAGTCGATAGGAACATCTTCTT 59.179 40.000 0.00 0.00 41.35 2.52
632 641 5.366460 TCGTAGTCGATAGGAACATCTTCT 58.634 41.667 0.00 0.00 41.35 2.85
633 642 5.670149 TCGTAGTCGATAGGAACATCTTC 57.330 43.478 0.00 0.00 41.35 2.87
634 643 6.446781 TTTCGTAGTCGATAGGAACATCTT 57.553 37.500 0.00 0.00 45.65 2.40
635 644 5.505985 GCTTTCGTAGTCGATAGGAACATCT 60.506 44.000 9.26 0.00 45.65 2.90
636 645 4.676018 GCTTTCGTAGTCGATAGGAACATC 59.324 45.833 9.26 0.00 45.65 3.06
637 646 4.608951 GCTTTCGTAGTCGATAGGAACAT 58.391 43.478 9.26 0.00 45.65 2.71
638 647 3.486375 CGCTTTCGTAGTCGATAGGAACA 60.486 47.826 9.26 0.00 45.65 3.18
639 648 3.034562 CGCTTTCGTAGTCGATAGGAAC 58.965 50.000 9.26 0.00 45.65 3.62
640 649 3.329743 CGCTTTCGTAGTCGATAGGAA 57.670 47.619 9.26 0.00 45.65 3.36
653 662 0.725784 AATCGCTGCAAACGCTTTCG 60.726 50.000 0.00 0.00 42.43 3.46
654 663 1.383412 GAAATCGCTGCAAACGCTTTC 59.617 47.619 17.06 17.06 38.12 2.62
655 664 1.268999 TGAAATCGCTGCAAACGCTTT 60.269 42.857 9.54 9.54 32.19 3.51
656 665 0.310543 TGAAATCGCTGCAAACGCTT 59.689 45.000 0.00 0.00 0.00 4.68
657 666 0.523072 ATGAAATCGCTGCAAACGCT 59.477 45.000 0.00 0.00 0.00 5.07
658 667 0.909843 GATGAAATCGCTGCAAACGC 59.090 50.000 0.00 0.00 31.13 4.84
669 678 7.767198 ACACATCATTTTGGGATTGATGAAATC 59.233 33.333 16.55 0.00 43.75 2.17
670 679 7.626390 ACACATCATTTTGGGATTGATGAAAT 58.374 30.769 16.55 1.91 43.75 2.17
671 680 7.006865 ACACATCATTTTGGGATTGATGAAA 57.993 32.000 16.55 0.00 43.75 2.69
672 681 6.608539 ACACATCATTTTGGGATTGATGAA 57.391 33.333 16.55 0.00 43.75 2.57
673 682 6.183360 GCTACACATCATTTTGGGATTGATGA 60.183 38.462 16.55 0.33 43.75 2.92
674 683 5.981315 GCTACACATCATTTTGGGATTGATG 59.019 40.000 9.85 9.85 45.27 3.07
675 684 5.069516 GGCTACACATCATTTTGGGATTGAT 59.930 40.000 0.00 0.00 0.00 2.57
676 685 4.402155 GGCTACACATCATTTTGGGATTGA 59.598 41.667 0.00 0.00 0.00 2.57
677 686 4.403432 AGGCTACACATCATTTTGGGATTG 59.597 41.667 0.00 0.00 0.00 2.67
678 687 4.613437 AGGCTACACATCATTTTGGGATT 58.387 39.130 0.00 0.00 0.00 3.01
679 688 4.079558 AGAGGCTACACATCATTTTGGGAT 60.080 41.667 0.00 0.00 0.00 3.85
680 689 3.266772 AGAGGCTACACATCATTTTGGGA 59.733 43.478 0.00 0.00 0.00 4.37
681 690 3.379372 CAGAGGCTACACATCATTTTGGG 59.621 47.826 0.00 0.00 0.00 4.12
682 691 4.012374 ACAGAGGCTACACATCATTTTGG 58.988 43.478 0.00 0.00 0.00 3.28
683 692 4.940046 AGACAGAGGCTACACATCATTTTG 59.060 41.667 0.00 0.00 0.00 2.44
684 693 5.046014 AGAGACAGAGGCTACACATCATTTT 60.046 40.000 0.00 0.00 0.00 1.82
685 694 4.469227 AGAGACAGAGGCTACACATCATTT 59.531 41.667 0.00 0.00 0.00 2.32
686 695 4.029520 AGAGACAGAGGCTACACATCATT 58.970 43.478 0.00 0.00 0.00 2.57
687 696 3.636300 GAGAGACAGAGGCTACACATCAT 59.364 47.826 0.00 0.00 0.00 2.45
688 697 3.020274 GAGAGACAGAGGCTACACATCA 58.980 50.000 0.00 0.00 0.00 3.07
689 698 3.020274 TGAGAGACAGAGGCTACACATC 58.980 50.000 0.00 0.00 0.00 3.06
690 699 3.093057 TGAGAGACAGAGGCTACACAT 57.907 47.619 0.00 0.00 0.00 3.21
691 700 2.586648 TGAGAGACAGAGGCTACACA 57.413 50.000 0.00 0.00 0.00 3.72
692 701 3.508012 TCTTTGAGAGACAGAGGCTACAC 59.492 47.826 0.00 0.00 32.49 2.90
693 702 3.767711 TCTTTGAGAGACAGAGGCTACA 58.232 45.455 0.00 0.00 32.49 2.74
694 703 4.681744 CATCTTTGAGAGACAGAGGCTAC 58.318 47.826 0.00 0.00 37.17 3.58
695 704 3.131933 GCATCTTTGAGAGACAGAGGCTA 59.868 47.826 0.00 0.00 37.17 3.93
696 705 2.093553 GCATCTTTGAGAGACAGAGGCT 60.094 50.000 0.00 0.00 37.17 4.58
697 706 2.093553 AGCATCTTTGAGAGACAGAGGC 60.094 50.000 0.00 0.00 37.17 4.70
698 707 3.734597 CGAGCATCTTTGAGAGACAGAGG 60.735 52.174 0.00 0.00 37.17 3.69
699 708 3.119531 ACGAGCATCTTTGAGAGACAGAG 60.120 47.826 0.00 0.00 37.17 3.35
700 709 2.822561 ACGAGCATCTTTGAGAGACAGA 59.177 45.455 0.00 0.00 37.17 3.41
701 710 3.229276 ACGAGCATCTTTGAGAGACAG 57.771 47.619 0.00 0.00 37.17 3.51
702 711 3.129462 CCTACGAGCATCTTTGAGAGACA 59.871 47.826 0.00 0.00 37.17 3.41
703 712 3.490078 CCCTACGAGCATCTTTGAGAGAC 60.490 52.174 0.00 0.00 37.17 3.36
704 713 2.690497 CCCTACGAGCATCTTTGAGAGA 59.310 50.000 0.00 0.00 39.13 3.10
705 714 2.690497 TCCCTACGAGCATCTTTGAGAG 59.310 50.000 0.00 0.00 0.00 3.20
706 715 2.735151 TCCCTACGAGCATCTTTGAGA 58.265 47.619 0.00 0.00 0.00 3.27
707 716 3.388308 CATCCCTACGAGCATCTTTGAG 58.612 50.000 0.00 0.00 0.00 3.02
708 717 2.103094 CCATCCCTACGAGCATCTTTGA 59.897 50.000 0.00 0.00 0.00 2.69
709 718 2.103094 TCCATCCCTACGAGCATCTTTG 59.897 50.000 0.00 0.00 0.00 2.77
710 719 2.366916 CTCCATCCCTACGAGCATCTTT 59.633 50.000 0.00 0.00 0.00 2.52
711 720 1.967066 CTCCATCCCTACGAGCATCTT 59.033 52.381 0.00 0.00 0.00 2.40
712 721 1.626686 CTCCATCCCTACGAGCATCT 58.373 55.000 0.00 0.00 0.00 2.90
713 722 0.037790 GCTCCATCCCTACGAGCATC 60.038 60.000 3.51 0.00 46.63 3.91
714 723 2.053618 GCTCCATCCCTACGAGCAT 58.946 57.895 3.51 0.00 46.63 3.79
715 724 3.538614 GCTCCATCCCTACGAGCA 58.461 61.111 3.51 0.00 46.63 4.26
716 725 2.336809 CGCTCCATCCCTACGAGC 59.663 66.667 0.00 0.00 44.48 5.03
717 726 1.360551 CACGCTCCATCCCTACGAG 59.639 63.158 0.00 0.00 0.00 4.18
718 727 1.379443 ACACGCTCCATCCCTACGA 60.379 57.895 0.00 0.00 0.00 3.43
719 728 1.226974 CACACGCTCCATCCCTACG 60.227 63.158 0.00 0.00 0.00 3.51
720 729 1.108776 TACACACGCTCCATCCCTAC 58.891 55.000 0.00 0.00 0.00 3.18
721 730 1.108776 GTACACACGCTCCATCCCTA 58.891 55.000 0.00 0.00 0.00 3.53
722 731 1.898154 GTACACACGCTCCATCCCT 59.102 57.895 0.00 0.00 0.00 4.20
723 732 1.518572 CGTACACACGCTCCATCCC 60.519 63.158 0.00 0.00 42.05 3.85
724 733 4.088421 CGTACACACGCTCCATCC 57.912 61.111 0.00 0.00 42.05 3.51
733 742 5.404366 ACATCTTATGAACACACGTACACAC 59.596 40.000 0.00 0.00 0.00 3.82
734 743 5.404066 CACATCTTATGAACACACGTACACA 59.596 40.000 0.00 0.00 0.00 3.72
735 744 5.631929 TCACATCTTATGAACACACGTACAC 59.368 40.000 0.00 0.00 0.00 2.90
736 745 5.774630 TCACATCTTATGAACACACGTACA 58.225 37.500 0.00 0.00 0.00 2.90
737 746 5.288712 CCTCACATCTTATGAACACACGTAC 59.711 44.000 0.00 0.00 0.00 3.67
738 747 5.407502 CCTCACATCTTATGAACACACGTA 58.592 41.667 0.00 0.00 0.00 3.57
739 748 4.245660 CCTCACATCTTATGAACACACGT 58.754 43.478 0.00 0.00 0.00 4.49
740 749 3.618594 CCCTCACATCTTATGAACACACG 59.381 47.826 0.00 0.00 0.00 4.49
741 750 4.579869 ACCCTCACATCTTATGAACACAC 58.420 43.478 0.00 0.00 0.00 3.82
742 751 4.908601 ACCCTCACATCTTATGAACACA 57.091 40.909 0.00 0.00 0.00 3.72
743 752 6.258727 CACATACCCTCACATCTTATGAACAC 59.741 42.308 0.00 0.00 0.00 3.32
744 753 6.348498 CACATACCCTCACATCTTATGAACA 58.652 40.000 0.00 0.00 0.00 3.18
745 754 5.237344 GCACATACCCTCACATCTTATGAAC 59.763 44.000 0.00 0.00 0.00 3.18
746 755 5.130975 AGCACATACCCTCACATCTTATGAA 59.869 40.000 0.00 0.00 0.00 2.57
747 756 4.655649 AGCACATACCCTCACATCTTATGA 59.344 41.667 0.00 0.00 0.00 2.15
748 757 4.965814 AGCACATACCCTCACATCTTATG 58.034 43.478 0.00 0.00 0.00 1.90
749 758 5.636903 AAGCACATACCCTCACATCTTAT 57.363 39.130 0.00 0.00 0.00 1.73
750 759 6.747414 ATAAGCACATACCCTCACATCTTA 57.253 37.500 0.00 0.00 0.00 2.10
751 760 5.636903 ATAAGCACATACCCTCACATCTT 57.363 39.130 0.00 0.00 0.00 2.40
752 761 5.602561 TGTATAAGCACATACCCTCACATCT 59.397 40.000 5.54 0.00 31.52 2.90
753 762 5.853936 TGTATAAGCACATACCCTCACATC 58.146 41.667 5.54 0.00 31.52 3.06
754 763 5.887214 TGTATAAGCACATACCCTCACAT 57.113 39.130 5.54 0.00 31.52 3.21
761 770 6.422100 CAGACACTCATGTATAAGCACATACC 59.578 42.308 0.00 0.00 39.95 2.73
768 777 3.448686 ACGCAGACACTCATGTATAAGC 58.551 45.455 0.00 0.00 39.95 3.09
770 779 4.983671 AGACGCAGACACTCATGTATAA 57.016 40.909 0.00 0.00 39.95 0.98
775 784 1.202348 TGGTAGACGCAGACACTCATG 59.798 52.381 0.00 0.00 0.00 3.07
777 786 0.881796 CTGGTAGACGCAGACACTCA 59.118 55.000 0.00 0.00 0.00 3.41
787 796 4.162690 GGCTGGGCCTGGTAGACG 62.163 72.222 12.70 0.00 46.69 4.18
806 815 0.539438 TCAGCCAAAAATGCCGAGGT 60.539 50.000 0.00 0.00 0.00 3.85
808 817 1.747355 AGATCAGCCAAAAATGCCGAG 59.253 47.619 0.00 0.00 0.00 4.63
810 819 2.533266 GAAGATCAGCCAAAAATGCCG 58.467 47.619 0.00 0.00 0.00 5.69
832 841 2.308344 TCGTCCGATCTAGCACGAG 58.692 57.895 9.32 0.00 36.39 4.18
837 846 0.518195 GGCTACTCGTCCGATCTAGC 59.482 60.000 13.91 13.91 33.23 3.42
909 919 1.286260 GAAGCGCTACGGATCGGAT 59.714 57.895 12.05 0.00 0.00 4.18
929 939 3.009301 CGGTGATCCAACGGTAGATAC 57.991 52.381 0.00 0.00 41.23 2.24
1090 1106 1.208293 CTGGAAGGACTAGAAGGTGGC 59.792 57.143 0.00 0.00 0.00 5.01
1122 1139 0.938192 AGAGGAGGGGAGAGTTAGGG 59.062 60.000 0.00 0.00 0.00 3.53
1192 1218 3.842923 CGGCAGACCTCGCTGGAT 61.843 66.667 1.32 0.00 39.71 3.41
1248 1274 1.208165 ATCCCTCCCAGAACCACCAC 61.208 60.000 0.00 0.00 0.00 4.16
1253 1279 0.332972 AAAGCATCCCTCCCAGAACC 59.667 55.000 0.00 0.00 0.00 3.62
1264 1290 3.675467 AATCGCGTTAGAAAAGCATCC 57.325 42.857 5.77 0.00 0.00 3.51
1418 1444 1.074547 ATAATGGGGGCAAAGGGGC 60.075 57.895 0.00 0.00 42.44 5.80
1471 1497 4.775058 AACACAACAACAGTGCAGTAAA 57.225 36.364 0.00 0.00 40.59 2.01
1515 1541 7.614583 ACTCCTCAGATCAAATTTTGTGATGAT 59.385 33.333 8.89 0.00 35.84 2.45
1526 1552 7.284489 GTCTACTCAGTACTCCTCAGATCAAAT 59.716 40.741 0.00 0.00 0.00 2.32
1565 1591 3.035363 TGCATCATGGGCATTCAAGAAT 58.965 40.909 8.61 0.00 36.11 2.40
1642 1668 4.101430 ACAAAAATTGCAATGACTCCCAGT 59.899 37.500 13.82 1.63 0.00 4.00
1711 1737 3.697045 TCCTTTTCGTTTCTTTCCAGCAA 59.303 39.130 0.00 0.00 0.00 3.91
1800 1826 2.546789 GGGGCAAATATTAAGGTCGACG 59.453 50.000 9.92 0.00 0.00 5.12
1851 1877 7.121759 ACTGAGAGTATACAATGCAGCAAATTT 59.878 33.333 0.00 0.00 0.00 1.82
1869 1895 6.268825 TCAGCGAAGTTTTATACTGAGAGT 57.731 37.500 0.00 0.00 37.12 3.24
1888 1914 8.436200 CAGTATTACACAGACTTTAAGTTCAGC 58.564 37.037 0.00 0.00 0.00 4.26
1898 1924 5.801531 TGTGACCAGTATTACACAGACTT 57.198 39.130 0.00 0.00 38.14 3.01
1912 1938 2.094906 CCTTGCATGAACATGTGACCAG 60.095 50.000 14.82 5.65 40.80 4.00
1914 1940 1.403249 GCCTTGCATGAACATGTGACC 60.403 52.381 14.82 0.00 40.80 4.02
1968 1994 9.730705 AGAAGTTATCCATATACATGATGTTGG 57.269 33.333 2.29 5.88 33.67 3.77
1997 2027 6.613271 AGTGGTACATCTATCATCTTCCACTT 59.387 38.462 7.13 0.00 46.97 3.16
2002 2032 6.520272 AGCAAGTGGTACATCTATCATCTTC 58.480 40.000 0.00 0.00 44.52 2.87
2024 2054 6.808212 TGACAGCTGCTAAATAAAATGAAAGC 59.192 34.615 15.27 0.00 0.00 3.51
2115 2145 7.439056 GGCATCCACAAATTGAAATGGTATTAG 59.561 37.037 0.00 0.00 33.67 1.73
2158 2188 6.310467 CAGATTTCAAGCCAACATTCTTCATG 59.690 38.462 0.00 0.00 39.07 3.07
2170 2200 6.294675 CCATAAACAGTTCAGATTTCAAGCCA 60.295 38.462 0.00 0.00 0.00 4.75
2179 2209 5.564550 ACTGCTTCCATAAACAGTTCAGAT 58.435 37.500 2.30 0.00 40.35 2.90
2369 2399 2.102588 GGCATTCCACGTCACCTAGTAT 59.897 50.000 0.00 0.00 0.00 2.12
2601 2631 9.701098 TGATAACCATTATCACCGTAAGATAAC 57.299 33.333 7.09 0.00 45.15 1.89
2713 2743 3.126514 CGAAGTTCGAGCTGGTAACTAGA 59.873 47.826 20.58 0.00 43.74 2.43
2877 2907 4.462508 TGGAAAAGCAACAAACATGACA 57.537 36.364 0.00 0.00 0.00 3.58
2979 3009 9.449719 AATCGGAAAACTATGAACATCTTAACT 57.550 29.630 0.00 0.00 0.00 2.24
2996 3026 4.315803 GAGTTCCAGAGACAATCGGAAAA 58.684 43.478 0.00 0.00 40.14 2.29
3076 3106 5.738619 TCTGTAGAGCAGTTTCCATGTTA 57.261 39.130 0.00 0.00 45.23 2.41
3143 3173 8.597662 AAATGCATAAATGAGTAATGGCATTC 57.402 30.769 17.41 8.63 33.87 2.67
3224 3254 4.949856 TCAGAAACTGGCAGAGAACTTTTT 59.050 37.500 23.66 9.16 31.51 1.94
3429 3459 6.014499 CACGTATTTTGGATAGGAGGGACTAT 60.014 42.308 0.00 0.00 41.55 2.12
3586 3616 9.221933 TGAAAAATATACCAACGTCTACAACAT 57.778 29.630 0.00 0.00 0.00 2.71
3678 3709 4.808414 TTCACAGATGAGTACTCCCTTG 57.192 45.455 20.11 16.00 35.83 3.61
3700 3731 7.048629 TGCCAGAAAGAACATAACATTTCAA 57.951 32.000 0.00 0.00 34.77 2.69
3844 3875 7.095229 GCGGCAGATGTATGACTTGATAAATTA 60.095 37.037 0.00 0.00 0.00 1.40
3861 3892 1.093496 TCAATGAGCAGCGGCAGATG 61.093 55.000 12.44 0.00 44.61 2.90
3982 4013 0.327924 TGCCAGTGTCAATTCCCGAT 59.672 50.000 0.00 0.00 0.00 4.18
4027 4058 5.726980 TCAAACGGCTACTTACCTTAAGA 57.273 39.130 3.36 0.00 39.09 2.10
4046 4077 6.592994 CAGTGCTAGAGAATCAACAGAATCAA 59.407 38.462 0.00 0.00 37.82 2.57
4088 4119 4.439057 GCTTTATCGATGTGGGTGTAGAA 58.561 43.478 8.54 0.00 0.00 2.10
4182 4214 0.179936 GATTCAGGAGGGCACTCAGG 59.820 60.000 19.73 9.16 45.81 3.86
4243 4276 4.068599 TGAATAGCACACGAAAACATGGA 58.931 39.130 0.00 0.00 0.00 3.41
4270 4303 1.694150 TCTCCTGAATGGATAAGGGCG 59.306 52.381 0.00 0.00 45.16 6.13
4335 4368 7.962918 GGTAGCAAATGTTATCCATTATAAGCG 59.037 37.037 0.00 0.00 43.04 4.68
4362 4396 6.322201 TGGAAATAAGAAGCAATTCCTCCATC 59.678 38.462 4.67 0.00 40.15 3.51
4400 4434 8.921670 CAGCATAAGTTTTAATACAACAAACCC 58.078 33.333 0.00 0.00 31.83 4.11
4486 4520 6.642733 TTTTCTATCTCAGGGTCTGGATTT 57.357 37.500 0.00 0.00 31.51 2.17
4754 4802 7.766278 TGTATGCTTAAAAGGAAAGAGCTCTAG 59.234 37.037 18.59 8.34 34.56 2.43
4755 4803 7.620880 TGTATGCTTAAAAGGAAAGAGCTCTA 58.379 34.615 18.59 0.00 34.56 2.43
4784 4834 6.183361 ACAAGGAGGGATACAGATATCTGAGA 60.183 42.308 34.16 22.62 46.59 3.27
4813 4863 4.615901 CAGTTACGCTGGCCATGA 57.384 55.556 5.51 0.00 41.42 3.07
4852 4902 1.014044 TTCACGAGAACATGCCGAGC 61.014 55.000 0.00 0.00 0.00 5.03
4865 4915 4.377370 CCACAGCATGGTTCACGA 57.623 55.556 0.00 0.00 44.46 4.35
4890 4940 3.620488 GTTGGGCATGAAGGACTCATAA 58.380 45.455 0.00 0.00 43.28 1.90
4969 7601 7.984422 AATTTATCAATGTATCATCGGAGCA 57.016 32.000 0.00 0.00 0.00 4.26
5029 7663 0.036388 ACCTTGATGTAGCCCACACG 60.036 55.000 0.00 0.00 40.86 4.49
5031 7665 1.003118 GTCACCTTGATGTAGCCCACA 59.997 52.381 0.00 0.00 42.69 4.17
5032 7666 1.679032 GGTCACCTTGATGTAGCCCAC 60.679 57.143 0.00 0.00 0.00 4.61
5041 7675 0.419459 AGAGAGGGGGTCACCTTGAT 59.581 55.000 0.00 0.00 42.10 2.57
5084 7718 1.236616 CCGTGCCAAGACAGCATCAA 61.237 55.000 0.00 0.00 43.29 2.57
5244 7889 5.368989 GGATTAATAAGCTACAGTGGCACT 58.631 41.667 15.88 15.88 0.00 4.40
5252 7897 4.141574 ACTTGGCGGGATTAATAAGCTACA 60.142 41.667 8.52 0.00 0.00 2.74
5270 7915 2.333926 CAAACATCATGCTGCACTTGG 58.666 47.619 3.57 0.00 0.00 3.61
5283 7928 3.013921 TGGATACGCTTTCCCAAACATC 58.986 45.455 0.00 0.00 42.51 3.06
5326 7972 2.519771 ACCGTACCACATAGGAGACA 57.480 50.000 0.00 0.00 41.22 3.41
5329 7975 2.564771 TCGTACCGTACCACATAGGAG 58.435 52.381 3.04 0.00 41.22 3.69
5331 7977 2.030540 CCATCGTACCGTACCACATAGG 60.031 54.545 3.04 0.00 45.67 2.57
5332 7978 2.606308 GCCATCGTACCGTACCACATAG 60.606 54.545 3.04 0.00 0.00 2.23
5333 7979 1.337703 GCCATCGTACCGTACCACATA 59.662 52.381 3.04 0.00 0.00 2.29
5334 7980 0.103572 GCCATCGTACCGTACCACAT 59.896 55.000 3.04 0.00 0.00 3.21
5335 7981 0.966875 AGCCATCGTACCGTACCACA 60.967 55.000 3.04 0.00 0.00 4.17
5336 7982 0.174162 AAGCCATCGTACCGTACCAC 59.826 55.000 3.04 0.00 0.00 4.16
5337 7983 0.457035 GAAGCCATCGTACCGTACCA 59.543 55.000 3.04 0.00 0.00 3.25
5338 7984 0.249197 GGAAGCCATCGTACCGTACC 60.249 60.000 3.04 0.00 0.00 3.34
5339 7985 0.457035 TGGAAGCCATCGTACCGTAC 59.543 55.000 0.00 0.00 0.00 3.67
5340 7986 1.067974 CATGGAAGCCATCGTACCGTA 59.932 52.381 0.00 0.00 43.15 4.02
5341 7987 0.179084 CATGGAAGCCATCGTACCGT 60.179 55.000 0.00 0.00 43.15 4.83
5342 7988 0.179084 ACATGGAAGCCATCGTACCG 60.179 55.000 0.00 0.00 43.15 4.02
5343 7989 1.134521 TCACATGGAAGCCATCGTACC 60.135 52.381 0.00 0.00 43.15 3.34
5344 7990 2.309528 TCACATGGAAGCCATCGTAC 57.690 50.000 0.00 0.00 43.15 3.67
5345 7991 2.170397 ACATCACATGGAAGCCATCGTA 59.830 45.455 0.00 0.00 43.15 3.43
5348 7994 1.066605 GCACATCACATGGAAGCCATC 59.933 52.381 0.00 0.00 43.15 3.51
5349 7995 1.108776 GCACATCACATGGAAGCCAT 58.891 50.000 0.00 0.00 46.37 4.40
5351 7997 0.454600 CTGCACATCACATGGAAGCC 59.545 55.000 0.00 0.00 33.60 4.35
5352 7998 1.456296 TCTGCACATCACATGGAAGC 58.544 50.000 0.00 0.00 33.60 3.86
5353 7999 3.562973 GGTATCTGCACATCACATGGAAG 59.437 47.826 0.00 0.00 33.60 3.46
5355 8001 2.158769 GGGTATCTGCACATCACATGGA 60.159 50.000 0.00 0.00 33.60 3.41
5356 8002 2.224606 GGGTATCTGCACATCACATGG 58.775 52.381 0.00 0.00 33.60 3.66
5357 8003 2.921821 TGGGTATCTGCACATCACATG 58.078 47.619 0.00 0.00 0.00 3.21
5358 8004 3.117776 ACATGGGTATCTGCACATCACAT 60.118 43.478 0.00 0.00 28.50 3.21
5359 8005 2.239402 ACATGGGTATCTGCACATCACA 59.761 45.455 0.00 0.00 28.50 3.58
5361 8007 2.921821 CACATGGGTATCTGCACATCA 58.078 47.619 0.00 0.00 28.50 3.07
5389 9385 0.249868 TGGACATAGCACGCCATAGC 60.250 55.000 0.00 0.00 0.00 2.97
5429 9425 0.179181 ATGTTGCGTACGTCGTCGAT 60.179 50.000 17.90 0.00 42.13 3.59
5430 9426 1.061262 CATGTTGCGTACGTCGTCGA 61.061 55.000 17.90 0.00 42.13 4.20
5432 9428 0.633733 CTCATGTTGCGTACGTCGTC 59.366 55.000 17.90 6.09 42.13 4.20
5434 9430 1.988409 CCTCATGTTGCGTACGTCG 59.012 57.895 17.90 0.00 43.12 5.12
5435 9431 1.693083 GGCCTCATGTTGCGTACGTC 61.693 60.000 17.90 9.82 0.00 4.34
5436 9432 1.740296 GGCCTCATGTTGCGTACGT 60.740 57.895 17.90 0.00 0.00 3.57
5448 9452 1.552337 CAAAGAGCTACTCTGGCCTCA 59.448 52.381 3.32 0.00 40.28 3.86
5449 9453 1.134551 CCAAAGAGCTACTCTGGCCTC 60.135 57.143 3.32 0.00 40.28 4.70
5483 9487 2.089980 CCTGCCAGTCATTCCTGAAAG 58.910 52.381 0.00 0.00 34.23 2.62
5484 9488 1.272092 CCCTGCCAGTCATTCCTGAAA 60.272 52.381 0.00 0.00 34.23 2.69
5485 9489 0.329261 CCCTGCCAGTCATTCCTGAA 59.671 55.000 0.00 0.00 34.23 3.02
5486 9490 0.842030 ACCCTGCCAGTCATTCCTGA 60.842 55.000 0.00 0.00 34.23 3.86
5487 9491 0.679002 CACCCTGCCAGTCATTCCTG 60.679 60.000 0.00 0.00 0.00 3.86
5488 9492 1.687612 CACCCTGCCAGTCATTCCT 59.312 57.895 0.00 0.00 0.00 3.36
5489 9493 1.379044 CCACCCTGCCAGTCATTCC 60.379 63.158 0.00 0.00 0.00 3.01
5490 9494 0.962356 CACCACCCTGCCAGTCATTC 60.962 60.000 0.00 0.00 0.00 2.67
5491 9495 1.075482 CACCACCCTGCCAGTCATT 59.925 57.895 0.00 0.00 0.00 2.57
5492 9496 2.759114 CACCACCCTGCCAGTCAT 59.241 61.111 0.00 0.00 0.00 3.06
5493 9497 4.269523 GCACCACCCTGCCAGTCA 62.270 66.667 0.00 0.00 0.00 3.41
5494 9498 3.909086 GAGCACCACCCTGCCAGTC 62.909 68.421 0.00 0.00 37.96 3.51
5495 9499 3.958860 GAGCACCACCCTGCCAGT 61.959 66.667 0.00 0.00 37.96 4.00
5496 9500 3.278072 ATGAGCACCACCCTGCCAG 62.278 63.158 0.00 0.00 37.96 4.85
5497 9501 3.259314 ATGAGCACCACCCTGCCA 61.259 61.111 0.00 0.00 37.96 4.92
5498 9502 2.753043 CATGAGCACCACCCTGCC 60.753 66.667 0.00 0.00 37.96 4.85
5499 9503 2.042831 GTCATGAGCACCACCCTGC 61.043 63.158 0.00 0.00 37.44 4.85
5500 9504 1.377725 GGTCATGAGCACCACCCTG 60.378 63.158 19.79 0.00 33.63 4.45
5501 9505 1.539869 AGGTCATGAGCACCACCCT 60.540 57.895 25.71 10.13 36.23 4.34
5502 9506 3.081554 AGGTCATGAGCACCACCC 58.918 61.111 25.71 7.87 36.23 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.