Multiple sequence alignment - TraesCS7B01G129800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G129800 chr7B 100.000 8722 0 0 1 8722 155908469 155899748 0.000000e+00 16107.0
1 TraesCS7B01G129800 chr7B 92.038 314 19 2 1070 1383 161323799 161323492 3.740000e-118 436.0
2 TraesCS7B01G129800 chr7D 96.598 5732 148 13 675 6392 192685548 192679850 0.000000e+00 9461.0
3 TraesCS7B01G129800 chr7D 93.809 1276 67 11 6408 7675 192679490 192678219 0.000000e+00 1908.0
4 TraesCS7B01G129800 chr7D 86.143 967 108 18 6742 7701 192677074 192676127 0.000000e+00 1020.0
5 TraesCS7B01G129800 chr7D 82.019 1040 129 31 7717 8718 192678223 192677204 0.000000e+00 832.0
6 TraesCS7B01G129800 chr7D 78.409 616 68 31 2 576 313702358 313702949 3.020000e-89 340.0
7 TraesCS7B01G129800 chr7D 75.561 757 135 32 7814 8546 192675988 192675258 2.350000e-85 327.0
8 TraesCS7B01G129800 chr7D 98.077 52 1 0 6488 6539 192679382 192679331 3.350000e-14 91.6
9 TraesCS7B01G129800 chr7A 96.475 5645 160 16 763 6398 202371975 202366361 0.000000e+00 9286.0
10 TraesCS7B01G129800 chr7A 93.880 817 37 8 6945 7757 202363840 202363033 0.000000e+00 1219.0
11 TraesCS7B01G129800 chr7A 92.837 726 47 5 8001 8722 202362157 202361433 0.000000e+00 1048.0
12 TraesCS7B01G129800 chr7A 85.776 689 45 19 1 668 202375986 202375330 0.000000e+00 680.0
13 TraesCS7B01G129800 chr7A 91.864 381 18 5 6506 6883 202366150 202365780 3.610000e-143 520.0
14 TraesCS7B01G129800 chr7A 80.684 585 84 23 1 572 58006990 58006422 2.250000e-115 427.0
15 TraesCS7B01G129800 chr7A 79.343 639 85 29 5 602 148663042 148663674 1.050000e-108 405.0
16 TraesCS7B01G129800 chr7A 97.059 102 3 0 6408 6509 202366277 202366176 1.160000e-38 172.0
17 TraesCS7B01G129800 chr7A 98.901 91 1 0 681 771 202373451 202373361 7.010000e-36 163.0
18 TraesCS7B01G129800 chr7A 80.526 190 24 9 6550 6737 202358807 202358629 5.490000e-27 134.0
19 TraesCS7B01G129800 chr2B 81.775 631 80 22 1 604 47527237 47526615 6.080000e-136 496.0
20 TraesCS7B01G129800 chr2B 85.714 259 33 4 1 259 47623674 47623420 4.010000e-68 270.0
21 TraesCS7B01G129800 chr6D 81.661 638 71 21 1 602 69294383 69293756 1.020000e-133 488.0
22 TraesCS7B01G129800 chr2D 87.854 247 29 1 6 252 29525661 29525416 1.110000e-73 289.0
23 TraesCS7B01G129800 chr4D 85.657 251 35 1 2 252 99366012 99366261 6.710000e-66 263.0
24 TraesCS7B01G129800 chr4D 86.364 132 16 2 115 246 206102464 206102593 9.130000e-30 143.0
25 TraesCS7B01G129800 chr3D 81.855 248 35 4 5 252 314113630 314113393 5.340000e-47 200.0
26 TraesCS7B01G129800 chr3D 77.778 252 34 13 98 332 545795332 545795086 1.530000e-27 135.0
27 TraesCS7B01G129800 chr3B 97.872 47 0 1 4323 4368 335136523 335136477 7.260000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G129800 chr7B 155899748 155908469 8721 True 16107.000000 16107 100.000000 1 8722 1 chr7B.!!$R1 8721
1 TraesCS7B01G129800 chr7D 192675258 192685548 10290 True 2273.266667 9461 88.701167 675 8718 6 chr7D.!!$R1 8043
2 TraesCS7B01G129800 chr7D 313702358 313702949 591 False 340.000000 340 78.409000 2 576 1 chr7D.!!$F1 574
3 TraesCS7B01G129800 chr7A 202358629 202375986 17357 True 1652.750000 9286 92.164750 1 8722 8 chr7A.!!$R2 8721
4 TraesCS7B01G129800 chr7A 58006422 58006990 568 True 427.000000 427 80.684000 1 572 1 chr7A.!!$R1 571
5 TraesCS7B01G129800 chr7A 148663042 148663674 632 False 405.000000 405 79.343000 5 602 1 chr7A.!!$F1 597
6 TraesCS7B01G129800 chr2B 47526615 47527237 622 True 496.000000 496 81.775000 1 604 1 chr2B.!!$R1 603
7 TraesCS7B01G129800 chr6D 69293756 69294383 627 True 488.000000 488 81.661000 1 602 1 chr6D.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 91 0.179045 GCAGGGCCTCGAATACATGT 60.179 55.000 0.95 2.69 0.00 3.21 F
1607 4954 0.036105 TGGCACTAGCTGTGGACATG 60.036 55.000 15.16 0.00 46.27 3.21 F
2017 5367 1.202627 AGCGATCTGATGAAAGGGAGC 60.203 52.381 0.00 0.00 0.00 4.70 F
3467 6823 0.540454 AGCGGAACTTACTAAGGCCC 59.460 55.000 0.00 0.85 0.00 5.80 F
4276 7632 1.272490 CAAGAGACCTGTAAGACGGCA 59.728 52.381 0.00 0.00 34.07 5.69 F
4904 8260 2.305927 GGAATCTCAACTCAGGGTTCCA 59.694 50.000 0.00 0.00 35.74 3.53 F
6207 9563 2.514726 AGCTGGGTTAGGTATGGGAT 57.485 50.000 0.00 0.00 34.81 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 5359 0.832135 TCACTCCTGTCGCTCCCTTT 60.832 55.000 0.00 0.0 0.00 3.11 R
2700 6056 0.541392 TTGCTGGTCCACATCGCTAT 59.459 50.000 2.82 0.0 0.00 2.97 R
3601 6957 0.599991 CAACCGCAGTGTCACTAGCA 60.600 55.000 20.21 0.0 0.00 3.49 R
4315 7671 0.471780 TGGGTGTCTGAGAGGCTGAA 60.472 55.000 0.00 0.0 0.00 3.02 R
6207 9563 8.196378 TGTGCTACATGGTAATATGGTATACA 57.804 34.615 5.01 0.0 32.32 2.29 R
6410 10110 1.986882 GGGCATACCTTGAAGATGGG 58.013 55.000 0.00 0.0 35.85 4.00 R
7952 14014 0.671251 GAAACCATGTGCCCGTCAAA 59.329 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 2.113243 GACTCCCTCCACACCCACAC 62.113 65.000 0.00 0.00 0.00 3.82
89 91 0.179045 GCAGGGCCTCGAATACATGT 60.179 55.000 0.95 2.69 0.00 3.21
147 149 1.914531 TTCGACGTCGCGATGAAGGA 61.915 55.000 33.54 22.20 40.35 3.36
148 150 1.513373 CGACGTCGCGATGAAGGAA 60.513 57.895 33.54 0.00 0.00 3.36
149 151 1.464429 CGACGTCGCGATGAAGGAAG 61.464 60.000 33.54 13.63 0.00 3.46
150 152 0.179171 GACGTCGCGATGAAGGAAGA 60.179 55.000 33.54 0.00 0.00 2.87
151 153 0.456312 ACGTCGCGATGAAGGAAGAC 60.456 55.000 33.54 6.25 0.00 3.01
152 154 1.464429 CGTCGCGATGAAGGAAGACG 61.464 60.000 23.83 8.94 43.79 4.18
153 155 1.516386 TCGCGATGAAGGAAGACGC 60.516 57.895 3.71 0.00 44.64 5.19
154 156 2.517450 CGCGATGAAGGAAGACGCC 61.517 63.158 0.00 0.00 45.15 5.68
155 157 1.447838 GCGATGAAGGAAGACGCCA 60.448 57.895 0.00 0.00 42.79 5.69
156 158 0.811616 GCGATGAAGGAAGACGCCAT 60.812 55.000 0.00 0.00 42.79 4.40
157 159 0.933097 CGATGAAGGAAGACGCCATG 59.067 55.000 0.00 0.00 0.00 3.66
158 160 1.303309 GATGAAGGAAGACGCCATGG 58.697 55.000 7.63 7.63 0.00 3.66
159 161 0.911769 ATGAAGGAAGACGCCATGGA 59.088 50.000 18.40 0.00 0.00 3.41
160 162 0.250234 TGAAGGAAGACGCCATGGAG 59.750 55.000 18.40 16.40 0.00 3.86
161 163 0.462759 GAAGGAAGACGCCATGGAGG 60.463 60.000 18.40 8.99 41.84 4.30
162 164 0.909610 AAGGAAGACGCCATGGAGGA 60.910 55.000 18.40 0.00 41.22 3.71
163 165 1.153349 GGAAGACGCCATGGAGGAC 60.153 63.158 18.40 11.31 41.22 3.85
164 166 1.519455 GAAGACGCCATGGAGGACG 60.519 63.158 18.40 12.21 41.22 4.79
166 168 2.507110 AAGACGCCATGGAGGACGTG 62.507 60.000 18.40 0.00 45.59 4.49
167 169 4.760047 ACGCCATGGAGGACGTGC 62.760 66.667 18.40 0.00 44.52 5.34
168 170 4.758251 CGCCATGGAGGACGTGCA 62.758 66.667 18.40 0.00 41.22 4.57
169 171 2.124570 GCCATGGAGGACGTGCAT 60.125 61.111 18.40 0.00 41.22 3.96
170 172 2.182842 GCCATGGAGGACGTGCATC 61.183 63.158 18.40 3.91 41.22 3.91
171 173 1.221566 CCATGGAGGACGTGCATCA 59.778 57.895 5.56 7.34 41.22 3.07
172 174 0.812811 CCATGGAGGACGTGCATCAG 60.813 60.000 5.56 1.83 41.22 2.90
173 175 1.153289 ATGGAGGACGTGCATCAGC 60.153 57.895 10.52 0.00 29.52 4.26
202 234 4.910585 GATCCCGCGCCGTGGAAT 62.911 66.667 20.10 1.85 34.74 3.01
214 246 1.303317 GTGGAATCCGGCACTGGTT 60.303 57.895 0.00 0.00 0.00 3.67
335 384 0.683504 TTCCGGCTGAGACTCCTACC 60.684 60.000 0.00 0.00 0.00 3.18
506 583 4.158949 GGACTTGGGCCGTTTATGTTAATT 59.841 41.667 0.00 0.00 0.00 1.40
559 636 5.067805 GCCTATTTGGGTTAGATTTGAGTGG 59.932 44.000 0.00 0.00 36.00 4.00
560 637 6.187682 CCTATTTGGGTTAGATTTGAGTGGT 58.812 40.000 0.00 0.00 0.00 4.16
623 702 2.158959 CGAACGACTGCATCCGGAC 61.159 63.158 6.12 0.00 0.00 4.79
630 709 4.214327 TGCATCCGGACGCGCATA 62.214 61.111 18.86 0.00 0.00 3.14
638 717 2.222213 TCCGGACGCGCATATTTATTTG 59.778 45.455 5.73 0.00 0.00 2.32
640 719 3.184783 CCGGACGCGCATATTTATTTGTA 59.815 43.478 5.73 0.00 0.00 2.41
651 730 7.474332 CGCATATTTATTTGTAATCCTCGAACG 59.526 37.037 0.00 0.00 0.00 3.95
654 733 6.651755 TTTATTTGTAATCCTCGAACGGAC 57.348 37.500 0.00 0.00 35.52 4.79
668 747 3.242248 CGAACGGACGAAATCTGGATAAC 59.758 47.826 0.00 0.00 38.12 1.89
669 748 3.175109 ACGGACGAAATCTGGATAACC 57.825 47.619 0.00 0.00 38.12 2.85
671 750 3.197116 ACGGACGAAATCTGGATAACCTT 59.803 43.478 0.00 0.00 38.12 3.50
672 751 3.555956 CGGACGAAATCTGGATAACCTTG 59.444 47.826 0.00 0.00 37.04 3.61
673 752 4.514401 GGACGAAATCTGGATAACCTTGT 58.486 43.478 0.00 0.00 37.04 3.16
919 4266 2.676471 GTGGCGCCCAATCCAAGT 60.676 61.111 26.77 0.00 34.18 3.16
955 4302 1.303888 ACAGCAGGGGAAGCATGTG 60.304 57.895 0.00 0.00 0.00 3.21
1183 4530 4.375313 CCTATAGCTCCCATTCCCCTTAT 58.625 47.826 0.00 0.00 0.00 1.73
1207 4554 4.560743 TCGCACCACTGCAGCCAA 62.561 61.111 15.27 0.00 44.50 4.52
1330 4677 2.600731 CTCCTCCTCCTCTCCGCT 59.399 66.667 0.00 0.00 0.00 5.52
1450 4797 3.470709 CGGAAGGTCATATGTTCAGCAT 58.529 45.455 1.90 0.00 41.42 3.79
1516 4863 2.893398 GCTGGACGGTCGGATCTT 59.107 61.111 1.43 0.00 0.00 2.40
1588 4935 1.296715 CAGCGGCAGGTTAGGTCTT 59.703 57.895 1.45 0.00 0.00 3.01
1591 4938 1.745489 CGGCAGGTTAGGTCTTGGC 60.745 63.158 0.00 0.00 36.82 4.52
1607 4954 0.036105 TGGCACTAGCTGTGGACATG 60.036 55.000 15.16 0.00 46.27 3.21
1627 4974 1.591863 GGATACGCCGAGGTTGCTC 60.592 63.158 0.00 0.00 0.00 4.26
1978 5328 1.681793 CAGAGGGGTTACATCGACGAT 59.318 52.381 4.05 4.05 34.44 3.73
2003 5353 1.922570 TACAAGGCGAAGAAGCGATC 58.077 50.000 0.00 0.00 38.18 3.69
2009 5359 1.536922 GGCGAAGAAGCGATCTGATGA 60.537 52.381 0.00 0.00 38.79 2.92
2017 5367 1.202627 AGCGATCTGATGAAAGGGAGC 60.203 52.381 0.00 0.00 0.00 4.70
2077 5427 4.382040 GCTGGTGCTAGAAGATACAGTGAA 60.382 45.833 0.00 0.00 36.03 3.18
2150 5500 6.496218 TGAGGATGTGTATGATGCTAGAAGAT 59.504 38.462 0.00 0.00 0.00 2.40
2362 5718 4.388378 GAACTACTCACATGGTAGGTCC 57.612 50.000 12.28 0.00 43.98 4.46
2404 5760 5.945144 TTCATGAGGATGATTCACAGAGA 57.055 39.130 0.00 0.00 38.43 3.10
2586 5942 8.899427 AAAGATGAGTACAGTTATGATGATGG 57.101 34.615 0.00 0.00 0.00 3.51
2700 6056 5.360714 AGAACTCTTCCATTTTGAAGCACAA 59.639 36.000 0.00 0.00 41.23 3.33
2792 6148 5.694910 ACATCAGTAAACAGAGGTAACAACG 59.305 40.000 0.00 0.00 41.41 4.10
2817 6173 3.703001 ACTGGATTCAGAAACACGGAT 57.297 42.857 8.39 0.00 43.49 4.18
2956 6312 0.681733 AGGTTGTCGCACTCACTGAT 59.318 50.000 0.00 0.00 0.00 2.90
3240 6596 3.369892 GCCTCTAGGAGCTCACAAAATCA 60.370 47.826 17.19 0.00 37.39 2.57
3247 6603 5.507637 AGGAGCTCACAAAATCATTCTGAT 58.492 37.500 17.19 0.00 39.09 2.90
3295 6651 4.887655 TCTAGCATAAGTCTCATTGACCGA 59.112 41.667 0.00 0.00 46.46 4.69
3343 6699 3.295093 TCAAAACAAGGTCATTGCTGGA 58.705 40.909 0.00 0.00 43.15 3.86
3467 6823 0.540454 AGCGGAACTTACTAAGGCCC 59.460 55.000 0.00 0.85 0.00 5.80
3471 6827 2.363359 CGGAACTTACTAAGGCCCGTAT 59.637 50.000 16.72 0.00 40.38 3.06
3480 6836 5.106876 ACTAAGGCCCGTATTAACAATGT 57.893 39.130 0.00 0.00 0.00 2.71
3629 6985 2.739913 GACACTGCGGTTGTTAGCAATA 59.260 45.455 0.00 0.00 43.31 1.90
3637 6993 5.090652 CGGTTGTTAGCAATACGCATAAT 57.909 39.130 0.00 0.00 46.13 1.28
3684 7040 3.266772 ACTTCAGCCCTCAATATTGTGGA 59.733 43.478 29.69 13.03 42.82 4.02
3772 7128 2.962421 TCAAGTTGGGACCACATTTTCC 59.038 45.455 2.34 0.00 0.00 3.13
3835 7191 2.093447 AGAAACCGGGAGATTAGTGCAG 60.093 50.000 6.32 0.00 0.00 4.41
3853 7209 2.791004 GCAGCATGACACAGTTTTGAAC 59.209 45.455 0.00 0.00 39.69 3.18
3871 7227 2.125147 TCGCAGCATACAGGCACC 60.125 61.111 0.00 0.00 35.83 5.01
3872 7228 2.436469 CGCAGCATACAGGCACCA 60.436 61.111 0.00 0.00 35.83 4.17
3939 7295 2.748605 CACCGAAGAGGCATCTATCAC 58.251 52.381 0.00 0.00 46.52 3.06
3978 7334 4.156739 GCAAAGAGGAACAATACTGGGAAG 59.843 45.833 0.00 0.00 0.00 3.46
4046 7402 2.540101 AGAAAGTCTGTCAACGAAAGCG 59.460 45.455 0.00 0.00 44.79 4.68
4172 7528 5.469084 ACAAAGAAAACCGAGAAGTCCATAC 59.531 40.000 0.00 0.00 0.00 2.39
4266 7622 6.827586 AAGTACTACTTCTCAAGAGACCTG 57.172 41.667 0.00 0.00 31.77 4.00
4276 7632 1.272490 CAAGAGACCTGTAAGACGGCA 59.728 52.381 0.00 0.00 34.07 5.69
4651 8007 3.154589 GCCTACAGGTACACAAGGC 57.845 57.895 10.74 10.74 45.37 4.35
4904 8260 2.305927 GGAATCTCAACTCAGGGTTCCA 59.694 50.000 0.00 0.00 35.74 3.53
5098 8454 6.596888 CCTCATCTGCTTTCTCAGAATTAACA 59.403 38.462 0.00 0.00 45.17 2.41
5701 9057 5.994668 CCTCCTATTAAGTCATTTCCTCTGC 59.005 44.000 0.00 0.00 0.00 4.26
6207 9563 2.514726 AGCTGGGTTAGGTATGGGAT 57.485 50.000 0.00 0.00 34.81 3.85
6364 9720 2.998670 GGGCTGTAGTTAGTCGTTTTCC 59.001 50.000 0.00 0.00 0.00 3.13
6405 9761 7.171630 GGAGAAAATCCTAGTCAAGTAGTCA 57.828 40.000 0.00 0.00 45.64 3.41
6410 10110 6.980416 AATCCTAGTCAAGTAGTCATACCC 57.020 41.667 0.00 0.00 31.78 3.69
6440 10140 6.279513 TCAAGGTATGCCCTAACATTTTTG 57.720 37.500 0.00 0.00 45.47 2.44
6498 10198 6.509677 CGATAAATAGAAACCCAAGTTCGAGC 60.510 42.308 0.00 0.00 34.19 5.03
6559 10289 7.121315 GGTGTATCTTGTTAGCCTTTTCTGAAT 59.879 37.037 0.00 0.00 0.00 2.57
6672 10403 4.036262 TCAAATGGTTATTAGGTCGCATGC 59.964 41.667 7.91 7.91 0.00 4.06
6698 10429 5.083533 ACATGTTGCAGAAAAAGGTGAAA 57.916 34.783 0.00 0.00 0.00 2.69
6896 12557 3.603532 TCCATCTCAGACACAAATCAGC 58.396 45.455 0.00 0.00 0.00 4.26
6912 12573 7.443272 CACAAATCAGCTTGATATACATCTGGA 59.557 37.037 0.00 0.00 35.76 3.86
6953 12614 8.375506 ACTTCAGTTAGACATTCCAGTTGATAA 58.624 33.333 0.00 0.00 0.00 1.75
6991 12652 4.159879 ACCTACAAATAGTTCCCAGAGTCG 59.840 45.833 0.00 0.00 0.00 4.18
7246 12908 0.113190 TCCTCTCCACTGAGTGCTCA 59.887 55.000 7.16 1.69 39.75 4.26
7287 12952 1.905215 CCAGCTGAGGAGGAAGAAGAA 59.095 52.381 17.39 0.00 0.00 2.52
7288 12953 2.093553 CCAGCTGAGGAGGAAGAAGAAG 60.094 54.545 17.39 0.00 0.00 2.85
7289 12954 2.830923 CAGCTGAGGAGGAAGAAGAAGA 59.169 50.000 8.42 0.00 0.00 2.87
7297 12962 1.905894 AGGAAGAAGAAGAGGGCAGAC 59.094 52.381 0.00 0.00 0.00 3.51
7309 12974 4.057428 GCAGACTCGCCACCTCGT 62.057 66.667 0.00 0.00 0.00 4.18
7378 13043 1.371635 GCAACACATGTTCGGCACC 60.372 57.895 0.00 0.00 35.83 5.01
7489 13154 4.119862 GCTTCTATGCAACGTCATCCTTA 58.880 43.478 0.00 0.00 0.00 2.69
7510 13175 7.728083 TCCTTATTTCCTTCTTTGGATGTCAAA 59.272 33.333 0.00 0.00 42.50 2.69
7638 13304 6.312180 CAGAGCCTGCAAATAATTTCCTTTTC 59.688 38.462 0.00 0.00 0.00 2.29
7662 13329 7.007723 TCTGGAGAGAAGAGAACTTAGAACTT 58.992 38.462 0.00 0.00 36.39 2.66
7664 13331 6.015010 TGGAGAGAAGAGAACTTAGAACTTGG 60.015 42.308 0.00 0.00 36.39 3.61
7724 13391 6.249951 AGAGAGTACAAGGTTATCACTGAGT 58.750 40.000 0.00 0.00 0.00 3.41
7740 13407 5.009110 TCACTGAGTCAGTTCGATATGGATC 59.991 44.000 23.33 0.00 42.59 3.36
7772 13439 6.267496 ACAGTGCATTATGTCTTTTTACCC 57.733 37.500 0.00 0.00 0.00 3.69
7773 13440 5.772672 ACAGTGCATTATGTCTTTTTACCCA 59.227 36.000 0.00 0.00 0.00 4.51
7822 13883 3.495629 GCATGGAGATGGATGCAGAGTTA 60.496 47.826 0.00 0.00 43.75 2.24
7829 13890 0.108138 GGATGCAGAGTTACGCACCT 60.108 55.000 0.00 0.00 41.79 4.00
7830 13891 1.002366 GATGCAGAGTTACGCACCTG 58.998 55.000 0.00 0.00 41.79 4.00
7860 13921 4.913335 TGGCTTCTACGTGTTCCTATAG 57.087 45.455 0.00 0.00 0.00 1.31
7872 13933 5.593010 GTGTTCCTATAGACACCACTCATC 58.407 45.833 11.81 0.00 40.11 2.92
7880 13941 6.805016 ATAGACACCACTCATCTTCAGAAT 57.195 37.500 0.00 0.00 0.00 2.40
7892 13953 6.691508 TCATCTTCAGAATTCAACGAGAAGA 58.308 36.000 19.74 19.74 43.63 2.87
7910 13971 6.904011 CGAGAAGAATGACAACAAGCATAATC 59.096 38.462 0.00 0.00 0.00 1.75
7911 13972 7.201591 CGAGAAGAATGACAACAAGCATAATCT 60.202 37.037 0.00 0.00 0.00 2.40
7913 13974 7.609146 AGAAGAATGACAACAAGCATAATCTCA 59.391 33.333 0.00 0.00 0.00 3.27
7914 13975 7.317842 AGAATGACAACAAGCATAATCTCAG 57.682 36.000 0.00 0.00 0.00 3.35
7919 13981 3.589951 ACAAGCATAATCTCAGGCCAT 57.410 42.857 5.01 0.00 0.00 4.40
7920 13982 3.220110 ACAAGCATAATCTCAGGCCATG 58.780 45.455 5.01 0.00 0.00 3.66
7929 13991 1.135094 CTCAGGCCATGGGTACATCT 58.865 55.000 15.13 0.00 34.35 2.90
7952 14014 3.140623 GCATTGAAGCCACACCAAATTT 58.859 40.909 0.00 0.00 0.00 1.82
7956 14018 4.478206 TGAAGCCACACCAAATTTTTGA 57.522 36.364 4.63 0.00 40.55 2.69
7957 14019 4.187694 TGAAGCCACACCAAATTTTTGAC 58.812 39.130 4.63 0.00 40.55 3.18
7978 14040 1.175983 GGCACATGGTTTCCGTTCCA 61.176 55.000 0.00 0.00 38.14 3.53
8010 14316 3.378512 AGGCAGACACTAATGATGAGGA 58.621 45.455 0.00 0.00 0.00 3.71
8014 14320 5.121811 GCAGACACTAATGATGAGGAACAT 58.878 41.667 0.00 0.00 42.47 2.71
8025 14331 2.107366 TGAGGAACATCGTGATGGCTA 58.893 47.619 13.95 0.00 42.91 3.93
8052 14358 3.904339 AGTACATTATCCCGATGCCTCTT 59.096 43.478 0.00 0.00 0.00 2.85
8075 14381 5.353394 AAACCTATGAATCCGCTAGACAA 57.647 39.130 0.00 0.00 0.00 3.18
8105 14412 6.144563 ACTTGACATCATTATCACTATTCGCG 59.855 38.462 0.00 0.00 0.00 5.87
8117 14424 4.619760 TCACTATTCGCGTAGAACAACAAG 59.380 41.667 5.77 0.00 42.39 3.16
8122 14429 2.292569 TCGCGTAGAACAACAAGAGTCT 59.707 45.455 5.77 0.00 0.00 3.24
8125 14432 4.049186 GCGTAGAACAACAAGAGTCTTCA 58.951 43.478 1.26 0.00 0.00 3.02
8146 14453 3.254166 CAGATCAGAGGCTAGCTTCTCTC 59.746 52.174 25.23 22.29 38.19 3.20
8176 14486 9.774742 GCAGTTTTATGTATAGTTCCAAAAGAG 57.225 33.333 0.00 0.00 0.00 2.85
8331 14645 4.260139 TGCAATACGTTGTCCTGTCTAA 57.740 40.909 0.00 0.00 37.65 2.10
8368 14686 5.995446 AGTAATTGCCCTCTCTTTTCTAGG 58.005 41.667 0.00 0.00 0.00 3.02
8403 14721 6.767902 TGAGGCTCTGGATTCATACATTAAAC 59.232 38.462 16.72 0.00 0.00 2.01
8499 14820 1.274728 AGTGCATCCGCTCATCCTATC 59.725 52.381 0.00 0.00 39.64 2.08
8622 14962 2.983898 TGTTAAGGGGAAAGTAGTGGCT 59.016 45.455 0.00 0.00 0.00 4.75
8623 14963 3.396611 TGTTAAGGGGAAAGTAGTGGCTT 59.603 43.478 0.00 0.00 0.00 4.35
8668 15009 4.412060 TTGGTTGGGGACAGGAAATTAT 57.588 40.909 0.00 0.00 44.54 1.28
8678 15019 4.706962 GGACAGGAAATTATGCAGGAAAGT 59.293 41.667 0.00 0.00 0.00 2.66
8679 15020 5.185828 GGACAGGAAATTATGCAGGAAAGTT 59.814 40.000 0.00 0.00 0.00 2.66
8680 15021 6.295292 GGACAGGAAATTATGCAGGAAAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
8692 15036 8.962884 ATGCAGGAAAGTTTAAAAGTGAATTT 57.037 26.923 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 140 0.933097 CATGGCGTCTTCCTTCATCG 59.067 55.000 0.00 0.00 0.00 3.84
147 149 2.283529 ACGTCCTCCATGGCGTCTT 61.284 57.895 6.96 0.00 41.97 3.01
148 150 2.680352 ACGTCCTCCATGGCGTCT 60.680 61.111 6.96 0.00 41.97 4.18
149 151 2.509336 CACGTCCTCCATGGCGTC 60.509 66.667 6.96 0.00 43.11 5.19
150 152 4.760047 GCACGTCCTCCATGGCGT 62.760 66.667 6.96 8.20 44.78 5.68
151 153 4.758251 TGCACGTCCTCCATGGCG 62.758 66.667 6.96 7.46 39.83 5.69
152 154 2.124570 ATGCACGTCCTCCATGGC 60.125 61.111 6.96 0.00 35.26 4.40
153 155 0.812811 CTGATGCACGTCCTCCATGG 60.813 60.000 4.97 4.97 37.10 3.66
154 156 1.434622 GCTGATGCACGTCCTCCATG 61.435 60.000 0.00 0.00 39.41 3.66
155 157 1.153289 GCTGATGCACGTCCTCCAT 60.153 57.895 0.00 0.00 39.41 3.41
156 158 2.265739 GCTGATGCACGTCCTCCA 59.734 61.111 0.00 0.00 39.41 3.86
157 159 1.812922 CTGCTGATGCACGTCCTCC 60.813 63.158 0.00 0.00 45.31 4.30
158 160 2.459442 GCTGCTGATGCACGTCCTC 61.459 63.158 0.00 0.00 45.31 3.71
159 161 2.435586 GCTGCTGATGCACGTCCT 60.436 61.111 0.00 0.00 45.31 3.85
160 162 2.743538 TGCTGCTGATGCACGTCC 60.744 61.111 0.00 0.00 45.31 4.79
161 163 2.747822 CCTGCTGCTGATGCACGTC 61.748 63.158 8.20 0.00 45.31 4.34
162 164 2.745100 CCTGCTGCTGATGCACGT 60.745 61.111 8.20 0.00 45.31 4.49
163 165 2.435410 TCCTGCTGCTGATGCACG 60.435 61.111 8.20 0.00 45.31 5.34
164 166 2.113433 CCTCCTGCTGCTGATGCAC 61.113 63.158 8.20 0.00 45.31 4.57
166 168 1.524165 CTCCTCCTGCTGCTGATGC 60.524 63.158 8.20 0.00 40.20 3.91
167 169 1.146485 CCTCCTCCTGCTGCTGATG 59.854 63.158 8.20 0.00 0.00 3.07
168 170 0.400237 ATCCTCCTCCTGCTGCTGAT 60.400 55.000 8.20 0.00 0.00 2.90
169 171 1.002662 ATCCTCCTCCTGCTGCTGA 59.997 57.895 8.20 0.26 0.00 4.26
170 172 1.446791 GATCCTCCTCCTGCTGCTG 59.553 63.158 0.00 0.00 0.00 4.41
171 173 1.765657 GGATCCTCCTCCTGCTGCT 60.766 63.158 3.84 0.00 32.53 4.24
172 174 2.817056 GGGATCCTCCTCCTGCTGC 61.817 68.421 12.58 0.00 36.57 5.25
173 175 2.506061 CGGGATCCTCCTCCTGCTG 61.506 68.421 12.58 0.00 36.57 4.41
174 176 2.123077 CGGGATCCTCCTCCTGCT 60.123 66.667 12.58 0.00 36.57 4.24
176 178 3.610669 CGCGGGATCCTCCTCCTG 61.611 72.222 12.58 0.00 43.50 3.86
214 246 2.528818 CCAGGACCACTTCTGGCCA 61.529 63.158 4.71 4.71 43.22 5.36
385 455 2.417257 GCCTTCATTGCCGCCATCA 61.417 57.895 0.00 0.00 0.00 3.07
530 607 5.535753 AATCTAACCCAAATAGGCATTGC 57.464 39.130 0.00 0.00 35.39 3.56
536 613 6.187682 ACCACTCAAATCTAACCCAAATAGG 58.812 40.000 0.00 0.00 37.03 2.57
613 692 2.987282 AATATGCGCGTCCGGATGCA 62.987 55.000 39.79 32.18 45.38 3.96
623 702 5.728049 CGAGGATTACAAATAAATATGCGCG 59.272 40.000 0.00 0.00 0.00 6.86
626 705 7.744715 CCGTTCGAGGATTACAAATAAATATGC 59.255 37.037 0.00 0.00 0.00 3.14
629 708 7.167968 CGTCCGTTCGAGGATTACAAATAAATA 59.832 37.037 0.00 0.00 43.04 1.40
630 709 6.019318 CGTCCGTTCGAGGATTACAAATAAAT 60.019 38.462 0.00 0.00 43.04 1.40
638 717 2.549633 TTCGTCCGTTCGAGGATTAC 57.450 50.000 0.00 0.00 43.04 1.89
640 719 2.165845 AGATTTCGTCCGTTCGAGGATT 59.834 45.455 0.00 0.00 43.04 3.01
651 730 4.332819 CACAAGGTTATCCAGATTTCGTCC 59.667 45.833 0.00 0.00 35.89 4.79
654 733 4.572389 CCTCACAAGGTTATCCAGATTTCG 59.428 45.833 0.00 0.00 37.94 3.46
668 747 1.856539 ATGGCCTCACCCTCACAAGG 61.857 60.000 3.32 0.00 42.95 3.61
669 748 0.679002 CATGGCCTCACCCTCACAAG 60.679 60.000 3.32 0.00 37.83 3.16
671 750 0.915872 ATCATGGCCTCACCCTCACA 60.916 55.000 3.32 0.00 37.83 3.58
672 751 1.131638 TATCATGGCCTCACCCTCAC 58.868 55.000 3.32 0.00 37.83 3.51
673 752 1.131638 GTATCATGGCCTCACCCTCA 58.868 55.000 3.32 0.00 37.83 3.86
919 4266 2.495809 TCCGATCGGAAATGGACGA 58.504 52.632 33.96 8.44 42.05 4.20
955 4302 2.521708 AGCTGCCAAACCCACCAC 60.522 61.111 0.00 0.00 0.00 4.16
1024 4371 3.670377 GCGTGGGGTTTGAGGTGC 61.670 66.667 0.00 0.00 0.00 5.01
1107 4454 2.298610 CGGAGTAGGAGCTGTACATGA 58.701 52.381 0.00 0.00 0.00 3.07
1207 4554 1.285023 GTCACCGTCGTAGTGCTGT 59.715 57.895 0.00 0.00 35.14 4.40
1359 4706 4.827087 AGCTGTGCGGCGGATGAG 62.827 66.667 9.78 7.56 37.29 2.90
1438 4785 4.889409 CCCCAAGTAACATGCTGAACATAT 59.111 41.667 0.00 0.00 36.64 1.78
1450 4797 1.638589 CCCTCCAATCCCCAAGTAACA 59.361 52.381 0.00 0.00 0.00 2.41
1573 4920 1.745489 GCCAAGACCTAACCTGCCG 60.745 63.158 0.00 0.00 0.00 5.69
1607 4954 2.108362 CAACCTCGGCGTATCCCC 59.892 66.667 6.85 0.00 0.00 4.81
1708 5055 1.486310 TCCTCTTCACCATCCCAATCG 59.514 52.381 0.00 0.00 0.00 3.34
1978 5328 2.418746 GCTTCTTCGCCTTGTATCCTCA 60.419 50.000 0.00 0.00 0.00 3.86
2003 5353 1.649664 CTGTCGCTCCCTTTCATCAG 58.350 55.000 0.00 0.00 0.00 2.90
2009 5359 0.832135 TCACTCCTGTCGCTCCCTTT 60.832 55.000 0.00 0.00 0.00 3.11
2017 5367 3.677121 CAGATTCAAACTCACTCCTGTCG 59.323 47.826 0.00 0.00 0.00 4.35
2077 5427 6.830912 TCTCCGATCATATTTCCTGTCATTT 58.169 36.000 0.00 0.00 0.00 2.32
2150 5500 1.590591 TTATACCTGCCAGCTCCCAA 58.409 50.000 0.00 0.00 0.00 4.12
2362 5718 4.536316 GCAGATGCAGACCTCTGG 57.464 61.111 15.08 0.00 43.94 3.86
2404 5760 2.103263 AGTGTTCCTTGAACTCGAAGCT 59.897 45.455 8.30 0.00 42.39 3.74
2700 6056 0.541392 TTGCTGGTCCACATCGCTAT 59.459 50.000 2.82 0.00 0.00 2.97
2956 6312 4.462483 AGCTTTTCTGTGTTTGTCCTTGAA 59.538 37.500 0.00 0.00 0.00 2.69
3096 6452 9.219603 TCCTTTTGTCTCTTGTAATATGAGTTG 57.780 33.333 0.00 0.00 33.50 3.16
3295 6651 3.196207 TTCTTGCTCGCCCCTTGCT 62.196 57.895 0.00 0.00 38.05 3.91
3343 6699 7.347222 TGTGAACCCCTGACTATTGTATTATCT 59.653 37.037 0.00 0.00 0.00 1.98
3395 6751 1.138069 TGAAGCCGAGTGAACTTGACA 59.862 47.619 0.00 0.00 0.00 3.58
3467 6823 7.801315 ACTTGTTGTAGCAACATTGTTAATACG 59.199 33.333 14.31 0.00 34.97 3.06
3471 6827 8.215926 AGTACTTGTTGTAGCAACATTGTTAA 57.784 30.769 14.31 0.00 34.97 2.01
3480 6836 6.238374 GCTTTCTGAAGTACTTGTTGTAGCAA 60.238 38.462 14.14 0.14 35.25 3.91
3601 6957 0.599991 CAACCGCAGTGTCACTAGCA 60.600 55.000 20.21 0.00 0.00 3.49
3629 6985 3.373748 TCATTGTTGCTTCGATTATGCGT 59.626 39.130 0.00 0.00 0.00 5.24
3637 6993 1.460743 CGAGCTTCATTGTTGCTTCGA 59.539 47.619 7.37 0.00 37.16 3.71
3684 7040 1.056700 ATCACGGCTATCCCTTGCCT 61.057 55.000 0.00 0.00 46.42 4.75
3835 7191 3.291585 CGAGTTCAAAACTGTGTCATGC 58.708 45.455 0.00 0.00 43.03 4.06
3853 7209 2.176273 GGTGCCTGTATGCTGCGAG 61.176 63.158 0.00 0.00 0.00 5.03
3871 7227 5.176592 TCTTTGTCATCAGAGATTCTGCTG 58.823 41.667 4.07 4.07 43.95 4.41
3872 7228 5.417754 TCTTTGTCATCAGAGATTCTGCT 57.582 39.130 1.23 0.00 43.95 4.24
3939 7295 7.901029 TCCTCTTTGCTCCATATCTACATTAG 58.099 38.462 0.00 0.00 0.00 1.73
3978 7334 2.029290 TCTCTTGCGGTAGTTTCAGACC 60.029 50.000 0.00 0.00 0.00 3.85
4046 7402 2.881074 TCGAGCAGCTGATTCTAACAC 58.119 47.619 20.43 0.00 0.00 3.32
4172 7528 4.082190 TGAAGATCTCGTTGTACCTTCCAG 60.082 45.833 0.00 0.00 31.64 3.86
4266 7622 2.957006 TCCTCCTTATCTGCCGTCTTAC 59.043 50.000 0.00 0.00 0.00 2.34
4276 7632 4.294347 CTGAGAACCCTTCCTCCTTATCT 58.706 47.826 0.00 0.00 0.00 1.98
4315 7671 0.471780 TGGGTGTCTGAGAGGCTGAA 60.472 55.000 0.00 0.00 0.00 3.02
4573 7929 4.832823 TCTGATTCTCCACTGTGTGACTTA 59.167 41.667 7.08 0.00 35.23 2.24
4651 8007 1.605710 CCGGCTCCTGATATTTGCAAG 59.394 52.381 0.00 0.00 0.00 4.01
4691 8047 3.430513 GGTACGGAGTCTCTTTTGGATCC 60.431 52.174 4.20 4.20 43.93 3.36
4904 8260 6.494835 ACTCCTTTTCCAGCATTAATTTCAGT 59.505 34.615 0.00 0.00 0.00 3.41
5444 8800 9.935241 CAGTTGGCTACATCATACTATAAATCT 57.065 33.333 1.24 0.00 0.00 2.40
5445 8801 9.712305 ACAGTTGGCTACATCATACTATAAATC 57.288 33.333 1.24 0.00 0.00 2.17
5447 8803 9.325198 CAACAGTTGGCTACATCATACTATAAA 57.675 33.333 5.25 0.00 0.00 1.40
5487 8843 9.567776 TGGACACAAAGTTAAGATTTCAGATTA 57.432 29.630 0.00 0.00 0.00 1.75
6207 9563 8.196378 TGTGCTACATGGTAATATGGTATACA 57.804 34.615 5.01 0.00 32.32 2.29
6292 9648 8.366401 TGAGAAGTTAAATTGCCAAATGAATCA 58.634 29.630 0.00 0.00 0.00 2.57
6300 9656 7.523293 TCATCTTGAGAAGTTAAATTGCCAA 57.477 32.000 0.00 0.00 0.00 4.52
6364 9720 5.640189 TTCTCCTTAACTCACTAAGACCG 57.360 43.478 0.00 0.00 31.59 4.79
6398 9754 4.280789 TGAAGATGGGGGTATGACTACT 57.719 45.455 0.00 0.00 0.00 2.57
6399 9755 4.202367 CCTTGAAGATGGGGGTATGACTAC 60.202 50.000 0.00 0.00 0.00 2.73
6400 9756 3.973973 CCTTGAAGATGGGGGTATGACTA 59.026 47.826 0.00 0.00 0.00 2.59
6401 9757 2.780010 CCTTGAAGATGGGGGTATGACT 59.220 50.000 0.00 0.00 0.00 3.41
6402 9758 2.509964 ACCTTGAAGATGGGGGTATGAC 59.490 50.000 0.00 0.00 0.00 3.06
6403 9759 2.858644 ACCTTGAAGATGGGGGTATGA 58.141 47.619 0.00 0.00 0.00 2.15
6405 9761 3.074538 GCATACCTTGAAGATGGGGGTAT 59.925 47.826 0.00 0.00 0.00 2.73
6410 10110 1.986882 GGGCATACCTTGAAGATGGG 58.013 55.000 0.00 0.00 35.85 4.00
6440 10140 3.502595 GCCTCCCTTGTAGTTTTTCTGTC 59.497 47.826 0.00 0.00 0.00 3.51
6498 10198 5.642063 ACTCCAACTAACGTGTATTCATTGG 59.358 40.000 0.00 0.00 37.32 3.16
6559 10289 2.378547 GGCCATATTATCCCCTTCCACA 59.621 50.000 0.00 0.00 0.00 4.17
6672 10403 3.052036 CCTTTTTCTGCAACATGTTCCG 58.948 45.455 8.48 0.00 0.00 4.30
6912 12573 8.390921 TCTAACTGAAGTCCCCATCTAAAATTT 58.609 33.333 0.00 0.00 0.00 1.82
7076 12738 7.047891 TGTCTCTTAAGTTTTCATGTCTGTGT 58.952 34.615 1.63 0.00 0.00 3.72
7079 12741 6.426328 AGCTGTCTCTTAAGTTTTCATGTCTG 59.574 38.462 1.63 0.00 0.00 3.51
7237 12899 3.740452 GCTGCATTATCTCTGAGCACTCA 60.740 47.826 0.00 0.00 38.06 3.41
7246 12908 4.080695 TGGAAGAACTGCTGCATTATCTCT 60.081 41.667 1.31 0.00 0.00 3.10
7378 13043 8.240883 AGAAGTGCTACTATAAACAGAAAACG 57.759 34.615 0.00 0.00 0.00 3.60
7489 13154 6.983906 AGTTTGACATCCAAAGAAGGAAAT 57.016 33.333 0.00 0.00 44.64 2.17
7510 13175 6.653320 ACCGATACACAAAATGACACATTAGT 59.347 34.615 0.00 0.00 0.00 2.24
7585 13250 6.187682 ACATAACCTTCCAGGGAACTTATTG 58.812 40.000 0.00 0.00 40.58 1.90
7595 13260 4.442192 GCTCTGTAGACATAACCTTCCAGG 60.442 50.000 0.00 0.00 42.49 4.45
7600 13265 3.118592 GCAGGCTCTGTAGACATAACCTT 60.119 47.826 4.45 0.00 33.43 3.50
7638 13304 6.834168 AGTTCTAAGTTCTCTTCTCTCCAG 57.166 41.667 0.00 0.00 35.36 3.86
7662 13329 4.704540 CCACTAGTACAAATGAAATGGCCA 59.295 41.667 8.56 8.56 0.00 5.36
7664 13331 4.672409 GCCACTAGTACAAATGAAATGGC 58.328 43.478 0.00 0.00 42.93 4.40
7706 13373 6.569801 CGAACTGACTCAGTGATAACCTTGTA 60.570 42.308 12.59 0.00 44.62 2.41
7719 13386 5.009510 ACAGATCCATATCGAACTGACTCAG 59.990 44.000 13.25 4.36 36.46 3.35
7802 13863 3.244009 CGTAACTCTGCATCCATCTCCAT 60.244 47.826 0.00 0.00 0.00 3.41
7822 13883 1.004560 CATCTCCACACAGGTGCGT 60.005 57.895 0.00 0.00 43.88 5.24
7829 13890 1.204704 CGTAGAAGCCATCTCCACACA 59.795 52.381 0.00 0.00 39.71 3.72
7830 13891 1.204941 ACGTAGAAGCCATCTCCACAC 59.795 52.381 0.00 0.00 39.71 3.82
7860 13921 5.240891 TGAATTCTGAAGATGAGTGGTGTC 58.759 41.667 7.05 0.00 0.00 3.67
7872 13933 7.095481 TGTCATTCTTCTCGTTGAATTCTGAAG 60.095 37.037 7.05 11.56 33.71 3.02
7880 13941 5.504010 GCTTGTTGTCATTCTTCTCGTTGAA 60.504 40.000 0.00 0.00 0.00 2.69
7892 13953 5.163581 GCCTGAGATTATGCTTGTTGTCATT 60.164 40.000 0.00 0.00 0.00 2.57
7910 13971 1.135094 AGATGTACCCATGGCCTGAG 58.865 55.000 6.09 0.00 0.00 3.35
7911 13972 2.329267 CTAGATGTACCCATGGCCTGA 58.671 52.381 6.09 0.00 0.00 3.86
7913 13974 1.059913 GCTAGATGTACCCATGGCCT 58.940 55.000 6.09 0.00 0.00 5.19
7914 13975 0.764890 TGCTAGATGTACCCATGGCC 59.235 55.000 6.09 0.00 0.00 5.36
7919 13981 3.433598 GGCTTCAATGCTAGATGTACCCA 60.434 47.826 0.00 0.00 0.00 4.51
7920 13982 3.142174 GGCTTCAATGCTAGATGTACCC 58.858 50.000 0.00 0.00 0.00 3.69
7929 13991 2.284754 TTGGTGTGGCTTCAATGCTA 57.715 45.000 0.00 0.00 0.00 3.49
7952 14014 0.671251 GAAACCATGTGCCCGTCAAA 59.329 50.000 0.00 0.00 0.00 2.69
7956 14018 2.671619 CGGAAACCATGTGCCCGT 60.672 61.111 0.00 0.00 35.83 5.28
7957 14019 2.195123 GAACGGAAACCATGTGCCCG 62.195 60.000 10.27 10.27 45.09 6.13
7978 14040 1.067495 GTGTCTGCCTCTTTCTAGCGT 60.067 52.381 0.00 0.00 0.00 5.07
8010 14316 2.363680 CTCTCCTAGCCATCACGATGTT 59.636 50.000 6.30 0.00 37.11 2.71
8014 14320 2.092592 TGTACTCTCCTAGCCATCACGA 60.093 50.000 0.00 0.00 0.00 4.35
8015 14321 2.298610 TGTACTCTCCTAGCCATCACG 58.701 52.381 0.00 0.00 0.00 4.35
8022 14328 4.333690 TCGGGATAATGTACTCTCCTAGC 58.666 47.826 0.00 0.00 0.00 3.42
8025 14331 3.511934 GCATCGGGATAATGTACTCTCCT 59.488 47.826 0.00 0.00 0.00 3.69
8052 14358 6.474140 TTGTCTAGCGGATTCATAGGTTTA 57.526 37.500 0.00 0.00 0.00 2.01
8105 14412 7.148641 TGATCTGAAGACTCTTGTTGTTCTAC 58.851 38.462 0.00 0.00 0.00 2.59
8117 14424 3.004734 GCTAGCCTCTGATCTGAAGACTC 59.995 52.174 2.29 0.00 0.00 3.36
8122 14429 3.636300 GAGAAGCTAGCCTCTGATCTGAA 59.364 47.826 20.56 0.00 0.00 3.02
8125 14432 3.490348 GAGAGAAGCTAGCCTCTGATCT 58.510 50.000 23.28 13.95 39.64 2.75
8146 14453 6.046593 TGGAACTATACATAAAACTGCGAGG 58.953 40.000 0.00 0.00 0.00 4.63
8176 14486 6.417044 CGTGCATTAGTAGATTGGTAGTACAC 59.583 42.308 2.06 0.00 0.00 2.90
8368 14686 1.915769 AGAGCCTCAGTCCACCCAC 60.916 63.158 0.00 0.00 0.00 4.61
8403 14721 8.303156 TGTATTTTGTGTGAACTAATTCATGGG 58.697 33.333 0.00 0.00 46.43 4.00
8462 14780 2.754552 GCACTATTGACCTTGGCATTGA 59.245 45.455 0.00 0.00 0.00 2.57
8622 14962 4.402616 ACCTTCCAAAATCTCATCCCAA 57.597 40.909 0.00 0.00 0.00 4.12
8623 14963 5.732331 ATACCTTCCAAAATCTCATCCCA 57.268 39.130 0.00 0.00 0.00 4.37
8668 15009 9.528018 CTAAATTCACTTTTAAACTTTCCTGCA 57.472 29.630 0.00 0.00 0.00 4.41
8692 15036 8.948401 AAGAGATATGTGAGAATTAGCCTCTA 57.052 34.615 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.