Multiple sequence alignment - TraesCS7B01G129100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G129100 chr7B 100.000 3528 0 0 1 3528 154568696 154565169 0.000000e+00 6516
1 TraesCS7B01G129100 chr7B 100.000 2787 0 0 3986 6772 154564711 154561925 0.000000e+00 5147
2 TraesCS7B01G129100 chr7B 89.894 663 47 12 3986 4632 526712962 526712304 0.000000e+00 835
3 TraesCS7B01G129100 chr7B 87.003 654 56 17 2886 3528 526713603 526712968 0.000000e+00 710
4 TraesCS7B01G129100 chr7B 85.366 656 79 9 844 1495 154278512 154277870 0.000000e+00 664
5 TraesCS7B01G129100 chr7B 83.308 653 89 14 844 1485 154363323 154362680 9.790000e-163 584
6 TraesCS7B01G129100 chr7B 81.277 470 68 13 4831 5288 154362631 154362170 4.990000e-96 363
7 TraesCS7B01G129100 chr7B 85.321 327 38 6 4867 5184 154277698 154277373 5.060000e-86 329
8 TraesCS7B01G129100 chr7B 79.443 467 76 18 4834 5294 333420983 333421435 5.100000e-81 313
9 TraesCS7B01G129100 chr7B 80.387 413 71 8 5493 5901 154361558 154361152 8.530000e-79 305
10 TraesCS7B01G129100 chr7B 79.893 373 65 8 5493 5860 154354800 154354433 1.450000e-66 265
11 TraesCS7B01G129100 chr7B 87.838 148 15 3 2372 2516 526713749 526713602 3.250000e-38 171
12 TraesCS7B01G129100 chr4B 98.747 1357 11 4 2177 3528 665338291 665339646 0.000000e+00 2407
13 TraesCS7B01G129100 chr4B 98.764 647 5 3 3986 4632 665339652 665340295 0.000000e+00 1147
14 TraesCS7B01G129100 chr4B 93.714 175 7 2 6602 6772 543544186 543544012 6.740000e-65 259
15 TraesCS7B01G129100 chr7A 90.659 1820 115 33 4633 6436 191834694 191832914 0.000000e+00 2368
16 TraesCS7B01G129100 chr7A 87.500 1696 123 38 534 2176 191836345 191834686 0.000000e+00 1875
17 TraesCS7B01G129100 chr7A 90.549 656 50 10 3986 4632 724315530 724314878 0.000000e+00 857
18 TraesCS7B01G129100 chr7A 88.545 646 52 16 2894 3528 26786952 26787586 0.000000e+00 763
19 TraesCS7B01G129100 chr7A 91.280 539 40 4 1 538 191848202 191847670 0.000000e+00 728
20 TraesCS7B01G129100 chr7A 85.831 614 74 10 876 1485 195199724 195199120 2.060000e-179 640
21 TraesCS7B01G129100 chr7A 83.926 647 83 8 844 1490 191698098 191697473 3.500000e-167 599
22 TraesCS7B01G129100 chr7A 88.172 465 43 9 3073 3528 29029174 29029635 1.660000e-150 544
23 TraesCS7B01G129100 chr7A 82.511 446 64 11 4841 5280 191697435 191696998 4.960000e-101 379
24 TraesCS7B01G129100 chr7A 79.747 474 69 20 4834 5294 195191046 195190587 1.100000e-82 318
25 TraesCS7B01G129100 chr6B 93.210 1355 81 11 2177 3528 561008548 561007202 0.000000e+00 1982
26 TraesCS7B01G129100 chr6B 93.674 1075 57 9 2460 3528 561143347 561144416 0.000000e+00 1598
27 TraesCS7B01G129100 chr6B 93.151 876 37 17 2569 3441 135132736 135131881 0.000000e+00 1264
28 TraesCS7B01G129100 chr6B 94.028 653 32 5 3986 4634 561007196 561006547 0.000000e+00 983
29 TraesCS7B01G129100 chr6B 92.900 662 35 7 3986 4639 135131861 135131204 0.000000e+00 952
30 TraesCS7B01G129100 chr6B 94.146 615 28 6 3986 4596 561144422 561145032 0.000000e+00 929
31 TraesCS7B01G129100 chr6B 89.866 671 48 12 3986 4640 162565545 162564879 0.000000e+00 845
32 TraesCS7B01G129100 chr6B 91.117 394 34 1 2176 2568 135139040 135138647 3.600000e-147 532
33 TraesCS7B01G129100 chr6B 90.847 295 27 0 2173 2467 561142731 561143025 4.920000e-106 396
34 TraesCS7B01G129100 chr6B 86.842 228 27 2 2270 2494 669538122 669538349 1.130000e-62 252
35 TraesCS7B01G129100 chr7D 91.124 890 45 6 676 1562 184865885 184865027 0.000000e+00 1175
36 TraesCS7B01G129100 chr7D 91.013 879 63 10 5307 6183 184863765 184862901 0.000000e+00 1171
37 TraesCS7B01G129100 chr7D 92.593 675 43 7 4633 5302 184864810 184864138 0.000000e+00 963
38 TraesCS7B01G129100 chr7D 86.667 615 68 11 876 1485 188987349 188987954 0.000000e+00 669
39 TraesCS7B01G129100 chr7D 84.592 649 80 12 844 1485 184588716 184588081 1.600000e-175 627
40 TraesCS7B01G129100 chr7D 85.430 302 37 6 4916 5213 184587854 184587556 2.370000e-79 307
41 TraesCS7B01G129100 chr7D 79.070 473 76 21 4830 5294 188992353 188992810 3.070000e-78 303
42 TraesCS7B01G129100 chr7D 90.952 210 14 4 1940 2146 184865027 184864820 1.860000e-70 278
43 TraesCS7B01G129100 chr7D 84.477 277 37 6 6284 6558 184860250 184859978 1.120000e-67 268
44 TraesCS7B01G129100 chr7D 87.963 216 21 4 163 378 184866282 184866072 4.050000e-62 250
45 TraesCS7B01G129100 chr7D 96.825 63 2 0 4 66 184866584 184866522 9.290000e-19 106
46 TraesCS7B01G129100 chr1D 90.015 661 49 10 3986 4632 298153516 298152859 0.000000e+00 839
47 TraesCS7B01G129100 chr1D 85.985 264 30 3 2177 2437 260224933 260225192 6.690000e-70 276
48 TraesCS7B01G129100 chr1D 94.118 170 8 2 6602 6769 153900172 153900341 2.420000e-64 257
49 TraesCS7B01G129100 chr1D 94.118 170 8 2 6602 6769 240427172 240427341 2.420000e-64 257
50 TraesCS7B01G129100 chr1D 88.172 186 18 1 2569 2750 37436265 37436450 1.140000e-52 219
51 TraesCS7B01G129100 chr5B 89.759 664 48 12 3986 4633 372240276 372240935 0.000000e+00 832
52 TraesCS7B01G129100 chr5B 86.878 663 56 19 2883 3528 372239622 372240270 0.000000e+00 713
53 TraesCS7B01G129100 chr5B 89.759 166 17 0 2177 2342 372239313 372239478 5.320000e-51 213
54 TraesCS7B01G129100 chr5A 87.195 656 54 18 2886 3528 443782072 443781434 0.000000e+00 719
55 TraesCS7B01G129100 chr5A 87.072 263 32 1 2180 2440 443782470 443782208 5.140000e-76 296
56 TraesCS7B01G129100 chr2A 86.207 638 59 20 2898 3520 103574041 103574664 0.000000e+00 664
57 TraesCS7B01G129100 chr2A 85.970 335 44 3 2177 2509 103573690 103574023 8.350000e-94 355
58 TraesCS7B01G129100 chr2A 94.220 173 7 3 6602 6772 533967544 533967373 1.870000e-65 261
59 TraesCS7B01G129100 chr1B 91.497 294 23 2 2508 2801 57022017 57022308 2.940000e-108 403
60 TraesCS7B01G129100 chr1B 92.045 88 6 1 2800 2886 57022367 57022454 9.220000e-24 122
61 TraesCS7B01G129100 chr1A 89.680 281 17 3 2561 2834 31897277 31897002 1.400000e-91 348
62 TraesCS7B01G129100 chr3B 85.714 266 35 2 2254 2516 685433402 685433137 1.860000e-70 278
63 TraesCS7B01G129100 chr6D 94.220 173 8 2 6602 6772 447403070 447402898 5.210000e-66 263
64 TraesCS7B01G129100 chr2D 94.220 173 7 3 6602 6772 417568125 417568296 1.870000e-65 261
65 TraesCS7B01G129100 chr4D 93.642 173 9 2 6602 6772 434671032 434671204 2.420000e-64 257
66 TraesCS7B01G129100 chr6A 91.935 186 9 5 6588 6768 21007402 21007586 8.720000e-64 255
67 TraesCS7B01G129100 chr3D 93.064 173 10 2 6602 6772 547022412 547022240 1.130000e-62 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G129100 chr7B 154561925 154568696 6771 True 5831.500000 6516 100.000000 1 6772 2 chr7B.!!$R4 6771
1 TraesCS7B01G129100 chr7B 526712304 526713749 1445 True 572.000000 835 88.245000 2372 4632 3 chr7B.!!$R5 2260
2 TraesCS7B01G129100 chr7B 154277373 154278512 1139 True 496.500000 664 85.343500 844 5184 2 chr7B.!!$R2 4340
3 TraesCS7B01G129100 chr7B 154361152 154363323 2171 True 417.333333 584 81.657333 844 5901 3 chr7B.!!$R3 5057
4 TraesCS7B01G129100 chr4B 665338291 665340295 2004 False 1777.000000 2407 98.755500 2177 4632 2 chr4B.!!$F1 2455
5 TraesCS7B01G129100 chr7A 191832914 191836345 3431 True 2121.500000 2368 89.079500 534 6436 2 chr7A.!!$R6 5902
6 TraesCS7B01G129100 chr7A 724314878 724315530 652 True 857.000000 857 90.549000 3986 4632 1 chr7A.!!$R4 646
7 TraesCS7B01G129100 chr7A 26786952 26787586 634 False 763.000000 763 88.545000 2894 3528 1 chr7A.!!$F1 634
8 TraesCS7B01G129100 chr7A 191847670 191848202 532 True 728.000000 728 91.280000 1 538 1 chr7A.!!$R1 537
9 TraesCS7B01G129100 chr7A 195199120 195199724 604 True 640.000000 640 85.831000 876 1485 1 chr7A.!!$R3 609
10 TraesCS7B01G129100 chr7A 191696998 191698098 1100 True 489.000000 599 83.218500 844 5280 2 chr7A.!!$R5 4436
11 TraesCS7B01G129100 chr6B 561006547 561008548 2001 True 1482.500000 1982 93.619000 2177 4634 2 chr6B.!!$R4 2457
12 TraesCS7B01G129100 chr6B 135131204 135132736 1532 True 1108.000000 1264 93.025500 2569 4639 2 chr6B.!!$R3 2070
13 TraesCS7B01G129100 chr6B 561142731 561145032 2301 False 974.333333 1598 92.889000 2173 4596 3 chr6B.!!$F2 2423
14 TraesCS7B01G129100 chr6B 162564879 162565545 666 True 845.000000 845 89.866000 3986 4640 1 chr6B.!!$R2 654
15 TraesCS7B01G129100 chr7D 188987349 188987954 605 False 669.000000 669 86.667000 876 1485 1 chr7D.!!$F1 609
16 TraesCS7B01G129100 chr7D 184859978 184866584 6606 True 601.571429 1175 90.706714 4 6558 7 chr7D.!!$R2 6554
17 TraesCS7B01G129100 chr7D 184587556 184588716 1160 True 467.000000 627 85.011000 844 5213 2 chr7D.!!$R1 4369
18 TraesCS7B01G129100 chr1D 298152859 298153516 657 True 839.000000 839 90.015000 3986 4632 1 chr1D.!!$R1 646
19 TraesCS7B01G129100 chr5B 372239313 372240935 1622 False 586.000000 832 88.798667 2177 4633 3 chr5B.!!$F1 2456
20 TraesCS7B01G129100 chr5A 443781434 443782470 1036 True 507.500000 719 87.133500 2180 3528 2 chr5A.!!$R1 1348
21 TraesCS7B01G129100 chr2A 103573690 103574664 974 False 509.500000 664 86.088500 2177 3520 2 chr2A.!!$F1 1343


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 602 0.036577 CTGGACTCTGAACTGGGCTG 60.037 60.000 0.00 0.00 0.00 4.85 F
496 647 0.246635 GACACCAGTATGTGCGTCCT 59.753 55.000 0.00 0.00 39.93 3.85 F
500 651 0.736636 CCAGTATGTGCGTCCTCGTA 59.263 55.000 0.00 0.00 39.49 3.43 F
873 1069 1.077716 ACCCGCACTGGCCTTATTC 60.078 57.895 3.32 0.00 36.38 1.75 F
2146 2395 0.403655 TATTTGCAGGACAGGCCACA 59.596 50.000 5.01 0.00 40.02 4.17 F
2167 2416 2.862541 TGACTGGCTGCTAACAAATGT 58.137 42.857 0.00 0.00 0.00 2.71 F
2169 2418 3.004629 TGACTGGCTGCTAACAAATGTTG 59.995 43.478 8.99 1.12 38.90 3.33 F
4691 5394 1.478105 GTGATGAAGGCATTGGTTCCC 59.522 52.381 0.00 0.00 34.11 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 2375 0.251922 ATGTGGCCTGTCCTGCAAAT 60.252 50.000 3.32 0.0 35.26 2.32 R
2135 2384 1.377725 CCAGTCATGTGGCCTGTCC 60.378 63.158 3.32 0.0 0.00 4.02 R
2146 2395 3.424703 ACATTTGTTAGCAGCCAGTCAT 58.575 40.909 0.00 0.0 0.00 3.06 R
2171 2420 6.977502 CACATGTGGTGTAATTGACTCAAAAA 59.022 34.615 18.51 0.0 42.75 1.94 R
4174 4871 3.751518 GACACCCTACTGACCATTTTGT 58.248 45.455 0.00 0.0 0.00 2.83 R
4668 5369 1.742761 ACCAATGCCTTCATCACTCG 58.257 50.000 0.00 0.0 31.27 4.18 R
4695 5398 7.817478 GTGGGGAACAAAATAATCAAACCTAAG 59.183 37.037 0.00 0.0 0.00 2.18 R
6600 10358 0.034574 TGCATGCTACGTTCCCCAAT 60.035 50.000 20.33 0.0 0.00 3.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 100 6.255887 ACGAGAAATAACCTGCTTCTAAATCG 59.744 38.462 0.00 0.00 29.59 3.34
89 118 3.984749 TACTGCCACAGCACGCGA 61.985 61.111 15.93 0.00 46.52 5.87
92 121 4.908687 TGCCACAGCACGCGACTT 62.909 61.111 15.93 0.00 46.52 3.01
125 154 2.094659 CGCGTTCCTCGTGCTTGAT 61.095 57.895 0.00 0.00 42.93 2.57
132 161 4.265556 CGTTCCTCGTGCTTGATACTTTAG 59.734 45.833 0.00 0.00 34.52 1.85
181 331 4.624125 GCTCCTAATCCACAACTGCTAAGT 60.624 45.833 0.00 0.00 38.71 2.24
230 380 3.215151 TGCTTAAACAACGAATCCCACA 58.785 40.909 0.00 0.00 0.00 4.17
232 382 3.252458 GCTTAAACAACGAATCCCACAGT 59.748 43.478 0.00 0.00 0.00 3.55
242 392 2.610438 ATCCCACAGTCCATGCTTTT 57.390 45.000 0.00 0.00 0.00 2.27
243 393 1.909700 TCCCACAGTCCATGCTTTTC 58.090 50.000 0.00 0.00 0.00 2.29
244 394 0.890683 CCCACAGTCCATGCTTTTCC 59.109 55.000 0.00 0.00 0.00 3.13
245 395 0.523072 CCACAGTCCATGCTTTTCCG 59.477 55.000 0.00 0.00 0.00 4.30
246 396 0.523072 CACAGTCCATGCTTTTCCGG 59.477 55.000 0.00 0.00 0.00 5.14
318 469 1.306148 CGTATACTGTCTCCGGAGCA 58.694 55.000 27.39 24.17 0.00 4.26
319 470 1.264557 CGTATACTGTCTCCGGAGCAG 59.735 57.143 34.78 34.78 0.00 4.24
320 471 1.609555 GTATACTGTCTCCGGAGCAGG 59.390 57.143 36.91 26.57 0.00 4.85
324 475 4.154347 GTCTCCGGAGCAGGGCAG 62.154 72.222 27.39 1.02 0.00 4.85
353 504 1.008194 TGCTTCTTGCTTGCTTGCG 60.008 52.632 0.00 0.00 43.37 4.85
383 534 2.034687 GGCCTCTCTTTGCAGCCA 59.965 61.111 6.04 0.00 43.32 4.75
385 536 1.664321 GGCCTCTCTTTGCAGCCATG 61.664 60.000 6.04 0.00 43.32 3.66
388 539 0.170561 CTCTCTTTGCAGCCATGTGC 59.829 55.000 1.45 1.45 44.27 4.57
395 546 4.476410 CAGCCATGTGCAGCAGCG 62.476 66.667 0.00 0.00 46.23 5.18
397 548 4.471726 GCCATGTGCAGCAGCGTC 62.472 66.667 0.00 0.00 46.23 5.19
398 549 4.156622 CCATGTGCAGCAGCGTCG 62.157 66.667 0.00 0.00 46.23 5.12
399 550 4.806481 CATGTGCAGCAGCGTCGC 62.806 66.667 9.80 9.80 46.23 5.19
408 559 4.504916 CAGCGTCGCAGGAGGAGG 62.505 72.222 21.09 0.00 0.00 4.30
409 560 4.742649 AGCGTCGCAGGAGGAGGA 62.743 66.667 21.09 0.00 0.00 3.71
410 561 4.500116 GCGTCGCAGGAGGAGGAC 62.500 72.222 13.44 0.00 0.00 3.85
411 562 2.752238 CGTCGCAGGAGGAGGACT 60.752 66.667 0.00 0.00 0.00 3.85
412 563 2.888863 GTCGCAGGAGGAGGACTG 59.111 66.667 0.00 0.00 37.76 3.51
413 564 1.679305 GTCGCAGGAGGAGGACTGA 60.679 63.158 0.00 0.00 36.86 3.41
414 565 1.076727 TCGCAGGAGGAGGACTGAA 59.923 57.895 0.00 0.00 36.86 3.02
415 566 0.324738 TCGCAGGAGGAGGACTGAAT 60.325 55.000 0.00 0.00 36.86 2.57
416 567 1.063942 TCGCAGGAGGAGGACTGAATA 60.064 52.381 0.00 0.00 36.86 1.75
417 568 1.757118 CGCAGGAGGAGGACTGAATAA 59.243 52.381 0.00 0.00 36.86 1.40
418 569 2.168521 CGCAGGAGGAGGACTGAATAAA 59.831 50.000 0.00 0.00 36.86 1.40
419 570 3.536570 GCAGGAGGAGGACTGAATAAAC 58.463 50.000 0.00 0.00 36.86 2.01
420 571 3.055094 GCAGGAGGAGGACTGAATAAACA 60.055 47.826 0.00 0.00 36.86 2.83
421 572 4.565652 GCAGGAGGAGGACTGAATAAACAA 60.566 45.833 0.00 0.00 36.86 2.83
422 573 5.181748 CAGGAGGAGGACTGAATAAACAAG 58.818 45.833 0.00 0.00 36.86 3.16
423 574 5.046304 CAGGAGGAGGACTGAATAAACAAGA 60.046 44.000 0.00 0.00 36.86 3.02
424 575 5.046231 AGGAGGAGGACTGAATAAACAAGAC 60.046 44.000 0.00 0.00 0.00 3.01
425 576 5.280011 GGAGGAGGACTGAATAAACAAGACA 60.280 44.000 0.00 0.00 0.00 3.41
426 577 5.799213 AGGAGGACTGAATAAACAAGACAG 58.201 41.667 0.00 0.00 35.14 3.51
427 578 4.938226 GGAGGACTGAATAAACAAGACAGG 59.062 45.833 0.00 0.00 33.57 4.00
428 579 5.513267 GGAGGACTGAATAAACAAGACAGGT 60.513 44.000 0.00 0.00 33.57 4.00
429 580 5.941788 AGGACTGAATAAACAAGACAGGTT 58.058 37.500 0.00 0.00 33.57 3.50
430 581 5.765182 AGGACTGAATAAACAAGACAGGTTG 59.235 40.000 0.00 0.00 33.57 3.77
431 582 5.531287 GGACTGAATAAACAAGACAGGTTGT 59.469 40.000 0.00 0.00 42.62 3.32
444 595 2.760374 CAGGTTGTCTGGACTCTGAAC 58.240 52.381 2.38 0.00 39.76 3.18
445 596 2.366916 CAGGTTGTCTGGACTCTGAACT 59.633 50.000 2.38 0.00 39.76 3.01
446 597 2.366916 AGGTTGTCTGGACTCTGAACTG 59.633 50.000 2.38 0.00 0.00 3.16
447 598 2.548920 GGTTGTCTGGACTCTGAACTGG 60.549 54.545 2.38 0.00 0.00 4.00
448 599 1.342074 TGTCTGGACTCTGAACTGGG 58.658 55.000 2.38 0.00 0.00 4.45
449 600 0.036858 GTCTGGACTCTGAACTGGGC 60.037 60.000 0.00 0.00 0.00 5.36
450 601 0.178921 TCTGGACTCTGAACTGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
451 602 0.036577 CTGGACTCTGAACTGGGCTG 60.037 60.000 0.00 0.00 0.00 4.85
452 603 1.298014 GGACTCTGAACTGGGCTGG 59.702 63.158 0.00 0.00 0.00 4.85
453 604 1.298014 GACTCTGAACTGGGCTGGG 59.702 63.158 0.00 0.00 0.00 4.45
454 605 2.045536 CTCTGAACTGGGCTGGGC 60.046 66.667 0.00 0.00 0.00 5.36
455 606 2.853542 TCTGAACTGGGCTGGGCA 60.854 61.111 0.00 0.00 0.00 5.36
456 607 2.207501 CTCTGAACTGGGCTGGGCAT 62.208 60.000 0.00 0.00 0.00 4.40
457 608 1.751927 CTGAACTGGGCTGGGCATC 60.752 63.158 0.00 0.00 0.00 3.91
458 609 2.356278 GAACTGGGCTGGGCATCA 59.644 61.111 0.00 0.00 0.00 3.07
459 610 2.036256 AACTGGGCTGGGCATCAC 59.964 61.111 0.00 0.00 0.00 3.06
460 611 2.769652 GAACTGGGCTGGGCATCACA 62.770 60.000 0.00 0.00 0.00 3.58
461 612 2.439701 CTGGGCTGGGCATCACAG 60.440 66.667 0.00 0.00 38.95 3.66
462 613 4.051167 TGGGCTGGGCATCACAGG 62.051 66.667 0.00 0.00 36.48 4.00
465 616 4.783621 GCTGGGCATCACAGGCGA 62.784 66.667 0.00 0.00 36.48 5.54
466 617 2.046023 CTGGGCATCACAGGCGAA 60.046 61.111 0.00 0.00 34.40 4.70
467 618 2.359850 TGGGCATCACAGGCGAAC 60.360 61.111 0.00 0.00 34.40 3.95
468 619 2.359850 GGGCATCACAGGCGAACA 60.360 61.111 0.00 0.00 34.40 3.18
469 620 1.750399 GGGCATCACAGGCGAACAT 60.750 57.895 0.00 0.00 34.40 2.71
470 621 1.430632 GGCATCACAGGCGAACATG 59.569 57.895 0.00 0.00 0.00 3.21
471 622 1.430632 GCATCACAGGCGAACATGG 59.569 57.895 0.00 0.00 0.00 3.66
472 623 1.026182 GCATCACAGGCGAACATGGA 61.026 55.000 0.00 0.00 0.00 3.41
473 624 0.729116 CATCACAGGCGAACATGGAC 59.271 55.000 0.00 0.00 0.00 4.02
474 625 0.740868 ATCACAGGCGAACATGGACG 60.741 55.000 0.00 3.41 0.00 4.79
480 631 2.431771 CGAACATGGACGCCGACA 60.432 61.111 0.00 0.00 0.00 4.35
481 632 2.726691 CGAACATGGACGCCGACAC 61.727 63.158 0.00 0.00 0.00 3.67
482 633 2.358247 AACATGGACGCCGACACC 60.358 61.111 0.00 0.00 0.00 4.16
483 634 3.171828 AACATGGACGCCGACACCA 62.172 57.895 0.00 0.00 38.09 4.17
484 635 2.815211 CATGGACGCCGACACCAG 60.815 66.667 0.00 0.00 37.12 4.00
485 636 3.311110 ATGGACGCCGACACCAGT 61.311 61.111 0.00 0.00 37.12 4.00
486 637 1.980232 ATGGACGCCGACACCAGTA 60.980 57.895 0.00 0.00 37.12 2.74
487 638 1.327690 ATGGACGCCGACACCAGTAT 61.328 55.000 0.00 0.00 37.12 2.12
488 639 1.518572 GGACGCCGACACCAGTATG 60.519 63.158 0.00 0.00 0.00 2.39
489 640 1.214589 GACGCCGACACCAGTATGT 59.785 57.895 0.00 0.00 34.78 2.29
490 641 1.076533 GACGCCGACACCAGTATGTG 61.077 60.000 0.00 0.00 42.05 3.21
491 642 2.452813 CGCCGACACCAGTATGTGC 61.453 63.158 0.00 0.00 39.93 4.57
492 643 2.452813 GCCGACACCAGTATGTGCG 61.453 63.158 0.00 0.00 39.93 5.34
493 644 1.080093 CCGACACCAGTATGTGCGT 60.080 57.895 0.00 0.00 39.93 5.24
494 645 1.076533 CCGACACCAGTATGTGCGTC 61.077 60.000 0.00 0.00 39.93 5.19
495 646 1.076533 CGACACCAGTATGTGCGTCC 61.077 60.000 0.00 0.00 39.93 4.79
496 647 0.246635 GACACCAGTATGTGCGTCCT 59.753 55.000 0.00 0.00 39.93 3.85
497 648 0.246635 ACACCAGTATGTGCGTCCTC 59.753 55.000 0.00 0.00 39.93 3.71
498 649 0.802222 CACCAGTATGTGCGTCCTCG 60.802 60.000 0.00 0.00 40.37 4.63
499 650 1.248785 ACCAGTATGTGCGTCCTCGT 61.249 55.000 0.00 0.00 39.49 4.18
500 651 0.736636 CCAGTATGTGCGTCCTCGTA 59.263 55.000 0.00 0.00 39.49 3.43
514 665 6.368243 TGCGTCCTCGTATTTTATTGTTACAA 59.632 34.615 0.00 0.00 39.49 2.41
515 666 6.898189 GCGTCCTCGTATTTTATTGTTACAAG 59.102 38.462 3.63 0.00 39.49 3.16
516 667 6.898189 CGTCCTCGTATTTTATTGTTACAAGC 59.102 38.462 3.63 0.00 0.00 4.01
518 669 7.065443 GTCCTCGTATTTTATTGTTACAAGCCT 59.935 37.037 3.63 0.00 0.00 4.58
519 670 7.279313 TCCTCGTATTTTATTGTTACAAGCCTC 59.721 37.037 3.63 0.00 0.00 4.70
520 671 7.065324 CCTCGTATTTTATTGTTACAAGCCTCA 59.935 37.037 3.63 0.00 0.00 3.86
521 672 8.325421 TCGTATTTTATTGTTACAAGCCTCAA 57.675 30.769 3.63 0.00 0.00 3.02
522 673 8.447833 TCGTATTTTATTGTTACAAGCCTCAAG 58.552 33.333 3.63 0.00 0.00 3.02
524 675 9.556030 GTATTTTATTGTTACAAGCCTCAAGTC 57.444 33.333 3.63 0.00 0.00 3.01
525 676 7.817418 TTTTATTGTTACAAGCCTCAAGTCT 57.183 32.000 3.63 0.00 0.00 3.24
527 678 7.817418 TTATTGTTACAAGCCTCAAGTCTTT 57.183 32.000 3.63 0.00 0.00 2.52
528 679 5.751243 TTGTTACAAGCCTCAAGTCTTTC 57.249 39.130 0.00 0.00 0.00 2.62
553 714 5.627499 TTGATTATGTTTGGTCTGTCTGC 57.373 39.130 0.00 0.00 0.00 4.26
554 715 4.009675 TGATTATGTTTGGTCTGTCTGCC 58.990 43.478 0.00 0.00 0.00 4.85
556 717 1.901591 ATGTTTGGTCTGTCTGCCTG 58.098 50.000 0.00 0.00 0.00 4.85
560 721 2.427095 GTTTGGTCTGTCTGCCTGTTTT 59.573 45.455 0.00 0.00 0.00 2.43
561 722 2.435372 TGGTCTGTCTGCCTGTTTTT 57.565 45.000 0.00 0.00 0.00 1.94
562 723 3.569194 TGGTCTGTCTGCCTGTTTTTA 57.431 42.857 0.00 0.00 0.00 1.52
564 725 4.072131 TGGTCTGTCTGCCTGTTTTTATC 58.928 43.478 0.00 0.00 0.00 1.75
566 727 3.746492 GTCTGTCTGCCTGTTTTTATCGT 59.254 43.478 0.00 0.00 0.00 3.73
568 729 5.407387 GTCTGTCTGCCTGTTTTTATCGTTA 59.593 40.000 0.00 0.00 0.00 3.18
572 733 6.314400 TGTCTGCCTGTTTTTATCGTTATACC 59.686 38.462 0.00 0.00 0.00 2.73
573 734 5.521010 TCTGCCTGTTTTTATCGTTATACCG 59.479 40.000 0.00 0.00 0.00 4.02
574 735 5.177326 TGCCTGTTTTTATCGTTATACCGT 58.823 37.500 0.00 0.00 0.00 4.83
575 736 5.642919 TGCCTGTTTTTATCGTTATACCGTT 59.357 36.000 0.00 0.00 0.00 4.44
577 738 7.495279 TGCCTGTTTTTATCGTTATACCGTTAT 59.505 33.333 0.00 0.00 0.00 1.89
578 739 8.977505 GCCTGTTTTTATCGTTATACCGTTATA 58.022 33.333 0.00 0.00 0.00 0.98
595 756 7.789026 ACCGTTATACTAATCTACCAAAGCTT 58.211 34.615 0.00 0.00 0.00 3.74
636 797 1.884579 CTTCACAGCTGTCCATTGCTT 59.115 47.619 18.64 0.00 37.44 3.91
663 824 5.201243 AGGGCAGTTAAGAATTTCATACCC 58.799 41.667 0.00 0.00 0.00 3.69
664 825 5.044105 AGGGCAGTTAAGAATTTCATACCCT 60.044 40.000 0.00 0.00 37.97 4.34
665 826 6.159751 AGGGCAGTTAAGAATTTCATACCCTA 59.840 38.462 6.02 0.00 40.98 3.53
703 870 2.154462 ACACAACTGGCAGAGTATTGC 58.846 47.619 23.66 0.00 43.34 3.56
842 1038 1.227263 CCCCCTCGCAACGACTATG 60.227 63.158 0.00 0.00 0.00 2.23
871 1067 2.272146 CACCCGCACTGGCCTTAT 59.728 61.111 3.32 0.00 36.38 1.73
872 1068 1.378514 CACCCGCACTGGCCTTATT 60.379 57.895 3.32 0.00 36.38 1.40
873 1069 1.077716 ACCCGCACTGGCCTTATTC 60.078 57.895 3.32 0.00 36.38 1.75
874 1070 2.180204 CCCGCACTGGCCTTATTCG 61.180 63.158 3.32 0.89 36.38 3.34
978 1182 2.125326 CATACTCCCGCCGTCCTCA 61.125 63.158 0.00 0.00 0.00 3.86
1502 1729 1.502231 GTGCGTAGATGCCATGTAGG 58.498 55.000 0.00 0.00 41.84 3.18
1504 1731 1.341209 TGCGTAGATGCCATGTAGGAG 59.659 52.381 5.81 0.00 41.22 3.69
1506 1733 2.557056 GCGTAGATGCCATGTAGGAGTA 59.443 50.000 5.81 0.00 41.22 2.59
1507 1734 3.366476 GCGTAGATGCCATGTAGGAGTAG 60.366 52.174 5.81 0.00 41.22 2.57
1508 1735 3.821600 CGTAGATGCCATGTAGGAGTAGT 59.178 47.826 0.00 0.00 41.22 2.73
1559 1786 4.573900 TGGCAACTGTGAACAAACATTTT 58.426 34.783 0.00 0.00 37.61 1.82
1561 1788 6.166279 TGGCAACTGTGAACAAACATTTTTA 58.834 32.000 0.00 0.00 37.61 1.52
1562 1789 6.312426 TGGCAACTGTGAACAAACATTTTTAG 59.688 34.615 0.00 0.00 37.61 1.85
1567 1794 9.573133 AACTGTGAACAAACATTTTTAGAGAAG 57.427 29.630 0.00 0.00 0.00 2.85
1569 1796 9.956720 CTGTGAACAAACATTTTTAGAGAAGAT 57.043 29.630 0.00 0.00 0.00 2.40
1587 1814 9.653287 AGAGAAGATATTTTCGTTCATGTTGTA 57.347 29.630 0.65 0.00 32.33 2.41
1590 1817 9.478019 GAAGATATTTTCGTTCATGTTGTACTG 57.522 33.333 0.00 0.00 0.00 2.74
1595 1822 2.143122 CGTTCATGTTGTACTGCCACT 58.857 47.619 0.00 0.00 0.00 4.00
1596 1823 3.006003 TCGTTCATGTTGTACTGCCACTA 59.994 43.478 0.00 0.00 0.00 2.74
1673 1904 9.968870 GTTTGTTAACAATTGGGTCTATTACAA 57.031 29.630 21.17 5.87 35.55 2.41
1703 1934 8.256611 ACATTACATGCTAGTAGAAAACTGTG 57.743 34.615 0.00 0.00 39.39 3.66
1707 1938 7.426929 ACATGCTAGTAGAAAACTGTGAAAG 57.573 36.000 0.00 0.00 39.39 2.62
1771 2002 8.721019 TTTTCTTTACTACAGAGTTTTTCGGA 57.279 30.769 0.00 0.00 37.10 4.55
1772 2003 8.897872 TTTCTTTACTACAGAGTTTTTCGGAT 57.102 30.769 0.00 0.00 37.10 4.18
1773 2004 8.897872 TTCTTTACTACAGAGTTTTTCGGATT 57.102 30.769 0.00 0.00 37.10 3.01
1774 2005 8.306680 TCTTTACTACAGAGTTTTTCGGATTG 57.693 34.615 0.00 0.00 37.10 2.67
1775 2006 6.476243 TTACTACAGAGTTTTTCGGATTGC 57.524 37.500 0.00 0.00 37.10 3.56
1776 2007 4.385825 ACTACAGAGTTTTTCGGATTGCA 58.614 39.130 0.00 0.00 28.61 4.08
1777 2008 4.819630 ACTACAGAGTTTTTCGGATTGCAA 59.180 37.500 0.00 0.00 28.61 4.08
1778 2009 3.964909 ACAGAGTTTTTCGGATTGCAAC 58.035 40.909 0.00 0.00 0.00 4.17
1798 2029 5.798910 CAACTTTGCAAGGTTGAAAATCAC 58.201 37.500 37.45 0.00 43.61 3.06
1857 2089 6.438259 TTCAAAGGAAATGTTTCGTGTACA 57.562 33.333 0.00 0.00 38.06 2.90
1864 2096 8.125728 AGGAAATGTTTCGTGTACAAAAATTG 57.874 30.769 0.00 0.00 38.06 2.32
1866 2098 8.596380 GGAAATGTTTCGTGTACAAAAATTGAA 58.404 29.630 0.00 0.00 38.06 2.69
1883 2115 5.643379 ATTGAAAACGATGTAATGCACCT 57.357 34.783 0.00 0.00 0.00 4.00
1888 2120 6.597672 TGAAAACGATGTAATGCACCTAATCT 59.402 34.615 0.00 0.00 0.00 2.40
1902 2134 6.430000 TGCACCTAATCTTTCAAGAAAGGTAC 59.570 38.462 19.27 16.20 45.89 3.34
1910 2142 6.419791 TCTTTCAAGAAAGGTACTGTTTCCA 58.580 36.000 19.27 0.00 45.80 3.53
1919 2151 4.380531 AGGTACTGTTTCCATATGATGCG 58.619 43.478 3.65 0.00 37.18 4.73
1927 2159 4.670896 TTCCATATGATGCGAGAAGACA 57.329 40.909 3.65 0.00 0.00 3.41
1935 2167 3.057806 TGATGCGAGAAGACAACGTCTAA 60.058 43.478 0.00 0.00 42.59 2.10
1938 2170 4.409570 TGCGAGAAGACAACGTCTAATAC 58.590 43.478 0.00 0.00 42.59 1.89
2094 2341 8.428186 TGTTTAGAACGTAGAGTCAAACAAAT 57.572 30.769 10.51 0.00 33.02 2.32
2102 2349 7.858583 ACGTAGAGTCAAACAAATAAAAGTCC 58.141 34.615 0.00 0.00 0.00 3.85
2117 2364 5.509716 AAAAGTCCGGGACAAACTAAAAG 57.490 39.130 27.87 0.00 34.60 2.27
2127 2374 4.313282 GACAAACTAAAAGGACCTAGCGT 58.687 43.478 0.00 0.00 0.00 5.07
2128 2375 5.473039 GACAAACTAAAAGGACCTAGCGTA 58.527 41.667 0.00 0.00 0.00 4.42
2135 2384 2.604046 AGGACCTAGCGTATTTGCAG 57.396 50.000 0.00 0.00 37.31 4.41
2146 2395 0.403655 TATTTGCAGGACAGGCCACA 59.596 50.000 5.01 0.00 40.02 4.17
2167 2416 2.862541 TGACTGGCTGCTAACAAATGT 58.137 42.857 0.00 0.00 0.00 2.71
2168 2417 3.221771 TGACTGGCTGCTAACAAATGTT 58.778 40.909 4.01 4.01 41.73 2.71
2169 2418 3.004629 TGACTGGCTGCTAACAAATGTTG 59.995 43.478 8.99 1.12 38.90 3.33
2543 3184 4.896482 GGATTGAAGAAGGCTACCTCTCTA 59.104 45.833 0.00 0.00 30.89 2.43
3257 3923 7.755822 CGAAATACCCATGTAGTCTATAGAAGC 59.244 40.741 3.40 0.00 0.00 3.86
4668 5369 7.558444 TGTATATAAGTTTGGTTCCAATCACCC 59.442 37.037 13.05 0.00 32.71 4.61
4690 5393 2.424956 GAGTGATGAAGGCATTGGTTCC 59.575 50.000 0.00 0.00 34.11 3.62
4691 5394 1.478105 GTGATGAAGGCATTGGTTCCC 59.522 52.381 0.00 0.00 34.11 3.97
4898 5623 6.264832 TCTTGTAGTTGCATGTGAAAACAAG 58.735 36.000 18.34 18.34 42.33 3.16
4903 5628 6.092955 AGTTGCATGTGAAAACAAGATGAT 57.907 33.333 0.00 0.00 0.00 2.45
4927 5656 3.696051 GAGATGGTGCTAATTTGCAGGAA 59.304 43.478 14.96 4.40 44.20 3.36
4933 5662 2.224992 TGCTAATTTGCAGGAACCTGGA 60.225 45.455 20.38 15.97 43.77 3.86
5012 5741 1.486726 CTTATCGAACTCCTGGCCCTT 59.513 52.381 0.00 0.00 0.00 3.95
5020 5749 1.147817 ACTCCTGGCCCTTTGTTCATT 59.852 47.619 0.00 0.00 0.00 2.57
5086 5815 1.118356 GCTGGATCACGGAGGAGGAT 61.118 60.000 0.00 0.00 0.00 3.24
5153 5882 2.167900 GGATTGAACTACTACCGTGCCT 59.832 50.000 0.00 0.00 0.00 4.75
5189 5921 9.438228 AATTAAGCTACTTCTTTGACTCCTTAC 57.562 33.333 0.00 0.00 0.00 2.34
5259 5996 6.458210 ACCGTAACCTAAATATGAATACCCG 58.542 40.000 0.00 0.00 0.00 5.28
5361 6552 4.862350 TCAGCAACATTTGTGATCTTGTG 58.138 39.130 0.00 0.00 0.00 3.33
5396 6587 4.991056 ACAATGTATATCATCGCACTCCAC 59.009 41.667 0.00 0.00 35.48 4.02
5400 6591 1.675552 TATCATCGCACTCCACTCGA 58.324 50.000 0.00 0.00 36.63 4.04
5408 6599 2.285220 CGCACTCCACTCGAATAAATGG 59.715 50.000 0.00 0.00 0.00 3.16
5418 6609 9.238368 TCCACTCGAATAAATGGAATTTTTACT 57.762 29.630 0.00 0.00 46.10 2.24
5479 6681 2.271800 GATTGCTAGGACAACTGGACG 58.728 52.381 0.00 0.00 31.03 4.79
5527 6729 7.068593 CCATATTTGGTATGTGTTCAGGACATT 59.931 37.037 0.00 0.00 38.83 2.71
5944 7149 1.735376 ATGTCTAGTGCCGCTACCCG 61.735 60.000 0.00 0.00 0.00 5.28
6011 7218 1.033574 AGTGATAGCGGCTAGTCACC 58.966 55.000 28.74 19.43 41.34 4.02
6053 7260 1.937223 TGTTTTGTGCCACTACTGTCG 59.063 47.619 0.00 0.00 0.00 4.35
6102 7309 7.415592 TTGCATGTTCCATGGAATATTAACA 57.584 32.000 28.57 23.33 34.49 2.41
6161 7368 1.255882 TCGGCCACAAGATGCAAAAT 58.744 45.000 2.24 0.00 0.00 1.82
6170 7377 5.327091 CACAAGATGCAAAATAGAACTCCG 58.673 41.667 0.00 0.00 0.00 4.63
6222 8708 7.978099 AAGAATAATTAAGCCCTCACCATTT 57.022 32.000 0.00 0.00 0.00 2.32
6262 8748 9.021807 GTTGTTGAGATATGGTAGGCTATACTA 57.978 37.037 0.00 0.00 0.00 1.82
6290 8776 9.950680 CGCAAATAAGAAATTCTACCATGTAAT 57.049 29.630 0.00 0.00 0.00 1.89
6337 10093 1.164411 CCACTTGACGCATAAAGGCA 58.836 50.000 0.00 0.00 0.00 4.75
6391 10147 3.260380 CCAAGATGGGGCATGTTAAAACA 59.740 43.478 0.00 0.00 37.30 2.83
6399 10155 4.262420 GGGGCATGTTAAAACAACATCTGT 60.262 41.667 0.00 0.00 43.03 3.41
6403 10159 6.308766 GGCATGTTAAAACAACATCTGTGATC 59.691 38.462 0.00 0.00 43.03 2.92
6410 10166 6.893958 AAACAACATCTGTGATCGATCTAC 57.106 37.500 25.02 20.06 38.67 2.59
6412 10168 6.154203 ACAACATCTGTGATCGATCTACAT 57.846 37.500 25.02 11.27 36.69 2.29
6417 10173 4.140536 TCTGTGATCGATCTACATGCTCT 58.859 43.478 25.02 0.00 0.00 4.09
6420 10176 5.308825 TGTGATCGATCTACATGCTCTAGA 58.691 41.667 25.02 0.00 0.00 2.43
6437 10193 5.629020 GCTCTAGATGCTCTAAAGATCAACG 59.371 44.000 0.00 0.00 0.00 4.10
6443 10199 2.094417 GCTCTAAAGATCAACGTGTGCC 59.906 50.000 0.00 0.00 0.00 5.01
6445 10201 2.037902 TCTAAAGATCAACGTGTGCCCA 59.962 45.455 0.00 0.00 0.00 5.36
6455 10211 2.842462 TGTGCCCACGTCACTCCT 60.842 61.111 7.31 0.00 35.58 3.69
6456 10212 2.357517 GTGCCCACGTCACTCCTG 60.358 66.667 0.00 0.00 0.00 3.86
6457 10213 2.523168 TGCCCACGTCACTCCTGA 60.523 61.111 0.00 0.00 0.00 3.86
6462 10218 2.997897 ACGTCACTCCTGAGGGGC 60.998 66.667 0.00 0.00 36.72 5.80
6484 10240 0.660595 CACGAGCGATAACCTAGCCG 60.661 60.000 0.00 0.00 0.00 5.52
6491 10247 2.365095 GATAACCTAGCCGCTGCCGT 62.365 60.000 2.16 0.00 38.69 5.68
6512 10270 4.742649 ACTCGCCGCTCCTCCTCA 62.743 66.667 0.00 0.00 0.00 3.86
6518 10276 2.043450 CGCTCCTCCTCACTCCCT 60.043 66.667 0.00 0.00 0.00 4.20
6562 10320 3.996614 GGCAAAGCCCGCTAGAAA 58.003 55.556 0.00 0.00 44.06 2.52
6563 10321 2.493547 GGCAAAGCCCGCTAGAAAT 58.506 52.632 0.00 0.00 44.06 2.17
6564 10322 1.675552 GGCAAAGCCCGCTAGAAATA 58.324 50.000 0.00 0.00 44.06 1.40
6565 10323 1.333931 GGCAAAGCCCGCTAGAAATAC 59.666 52.381 0.00 0.00 44.06 1.89
6566 10324 2.289565 GCAAAGCCCGCTAGAAATACT 58.710 47.619 0.00 0.00 0.00 2.12
6567 10325 2.683362 GCAAAGCCCGCTAGAAATACTT 59.317 45.455 0.00 0.00 0.00 2.24
6568 10326 3.487544 GCAAAGCCCGCTAGAAATACTTG 60.488 47.826 0.00 0.00 0.00 3.16
6569 10327 2.622064 AGCCCGCTAGAAATACTTGG 57.378 50.000 0.00 0.00 0.00 3.61
6570 10328 1.141053 AGCCCGCTAGAAATACTTGGG 59.859 52.381 0.00 0.00 37.38 4.12
6571 10329 1.594331 CCCGCTAGAAATACTTGGGC 58.406 55.000 0.00 0.00 34.31 5.36
6572 10330 1.594331 CCGCTAGAAATACTTGGGCC 58.406 55.000 0.00 0.00 34.31 5.80
6573 10331 1.141053 CCGCTAGAAATACTTGGGCCT 59.859 52.381 4.53 0.00 34.31 5.19
6574 10332 2.421529 CCGCTAGAAATACTTGGGCCTT 60.422 50.000 4.53 0.00 34.31 4.35
6575 10333 2.872858 CGCTAGAAATACTTGGGCCTTC 59.127 50.000 4.53 0.00 0.00 3.46
6576 10334 3.215151 GCTAGAAATACTTGGGCCTTCC 58.785 50.000 4.53 0.00 0.00 3.46
6577 10335 3.117851 GCTAGAAATACTTGGGCCTTCCT 60.118 47.826 4.53 0.00 36.20 3.36
6578 10336 4.102681 GCTAGAAATACTTGGGCCTTCCTA 59.897 45.833 4.53 0.00 36.20 2.94
6579 10337 4.505324 AGAAATACTTGGGCCTTCCTAC 57.495 45.455 4.53 0.00 36.20 3.18
6580 10338 3.850173 AGAAATACTTGGGCCTTCCTACA 59.150 43.478 4.53 0.00 36.20 2.74
6581 10339 4.291249 AGAAATACTTGGGCCTTCCTACAA 59.709 41.667 4.53 0.00 36.20 2.41
6582 10340 4.881157 AATACTTGGGCCTTCCTACAAT 57.119 40.909 4.53 0.00 36.20 2.71
6583 10341 2.808906 ACTTGGGCCTTCCTACAATC 57.191 50.000 4.53 0.00 36.20 2.67
6584 10342 2.279173 ACTTGGGCCTTCCTACAATCT 58.721 47.619 4.53 0.00 36.20 2.40
6585 10343 2.649816 ACTTGGGCCTTCCTACAATCTT 59.350 45.455 4.53 0.00 36.20 2.40
6586 10344 3.282885 CTTGGGCCTTCCTACAATCTTC 58.717 50.000 4.53 0.00 36.20 2.87
6587 10345 2.562296 TGGGCCTTCCTACAATCTTCT 58.438 47.619 4.53 0.00 36.20 2.85
6588 10346 2.919602 TGGGCCTTCCTACAATCTTCTT 59.080 45.455 4.53 0.00 36.20 2.52
6589 10347 3.333680 TGGGCCTTCCTACAATCTTCTTT 59.666 43.478 4.53 0.00 36.20 2.52
6590 10348 3.948473 GGGCCTTCCTACAATCTTCTTTC 59.052 47.826 0.84 0.00 0.00 2.62
6591 10349 3.623510 GGCCTTCCTACAATCTTCTTTCG 59.376 47.826 0.00 0.00 0.00 3.46
6592 10350 4.254492 GCCTTCCTACAATCTTCTTTCGT 58.746 43.478 0.00 0.00 0.00 3.85
6593 10351 4.093556 GCCTTCCTACAATCTTCTTTCGTG 59.906 45.833 0.00 0.00 0.00 4.35
6594 10352 5.479306 CCTTCCTACAATCTTCTTTCGTGA 58.521 41.667 0.00 0.00 0.00 4.35
6595 10353 6.109359 CCTTCCTACAATCTTCTTTCGTGAT 58.891 40.000 0.00 0.00 0.00 3.06
6596 10354 6.595716 CCTTCCTACAATCTTCTTTCGTGATT 59.404 38.462 0.00 0.00 0.00 2.57
6598 10356 6.697395 TCCTACAATCTTCTTTCGTGATTGA 58.303 36.000 18.01 5.08 45.67 2.57
6599 10357 7.331026 TCCTACAATCTTCTTTCGTGATTGAT 58.669 34.615 18.01 7.97 45.67 2.57
6600 10358 8.474831 TCCTACAATCTTCTTTCGTGATTGATA 58.525 33.333 18.01 8.50 45.67 2.15
6601 10359 9.265901 CCTACAATCTTCTTTCGTGATTGATAT 57.734 33.333 18.01 3.02 45.67 1.63
6604 10362 8.400947 ACAATCTTCTTTCGTGATTGATATTGG 58.599 33.333 18.01 0.00 45.67 3.16
6605 10363 6.925610 TCTTCTTTCGTGATTGATATTGGG 57.074 37.500 0.00 0.00 0.00 4.12
6606 10364 5.822519 TCTTCTTTCGTGATTGATATTGGGG 59.177 40.000 0.00 0.00 0.00 4.96
6607 10365 5.366482 TCTTTCGTGATTGATATTGGGGA 57.634 39.130 0.00 0.00 0.00 4.81
6608 10366 5.750524 TCTTTCGTGATTGATATTGGGGAA 58.249 37.500 0.00 0.00 0.00 3.97
6609 10367 5.588648 TCTTTCGTGATTGATATTGGGGAAC 59.411 40.000 0.00 0.00 0.00 3.62
6610 10368 3.462982 TCGTGATTGATATTGGGGAACG 58.537 45.455 0.00 0.00 0.00 3.95
6611 10369 3.118555 TCGTGATTGATATTGGGGAACGT 60.119 43.478 0.00 0.00 0.00 3.99
6612 10370 4.099727 TCGTGATTGATATTGGGGAACGTA 59.900 41.667 0.00 0.00 0.00 3.57
6613 10371 4.447724 CGTGATTGATATTGGGGAACGTAG 59.552 45.833 0.00 0.00 0.00 3.51
6614 10372 4.213482 GTGATTGATATTGGGGAACGTAGC 59.787 45.833 0.00 0.00 0.00 3.58
6615 10373 3.916359 TTGATATTGGGGAACGTAGCA 57.084 42.857 0.00 0.00 0.00 3.49
6616 10374 4.431416 TTGATATTGGGGAACGTAGCAT 57.569 40.909 0.00 0.00 0.00 3.79
6617 10375 3.738982 TGATATTGGGGAACGTAGCATG 58.261 45.455 0.00 0.00 0.00 4.06
6618 10376 1.961793 TATTGGGGAACGTAGCATGC 58.038 50.000 10.51 10.51 0.00 4.06
6619 10377 0.034574 ATTGGGGAACGTAGCATGCA 60.035 50.000 21.98 2.77 0.00 3.96
6620 10378 0.250945 TTGGGGAACGTAGCATGCAA 60.251 50.000 21.98 0.00 0.00 4.08
6621 10379 0.034574 TGGGGAACGTAGCATGCAAT 60.035 50.000 21.98 1.90 0.00 3.56
6622 10380 1.102978 GGGGAACGTAGCATGCAATT 58.897 50.000 21.98 7.96 0.00 2.32
6623 10381 1.476488 GGGGAACGTAGCATGCAATTT 59.524 47.619 21.98 7.02 0.00 1.82
6624 10382 2.685897 GGGGAACGTAGCATGCAATTTA 59.314 45.455 21.98 0.00 0.00 1.40
6625 10383 3.129638 GGGGAACGTAGCATGCAATTTAA 59.870 43.478 21.98 0.00 0.00 1.52
6626 10384 4.381079 GGGGAACGTAGCATGCAATTTAAA 60.381 41.667 21.98 0.00 0.00 1.52
6627 10385 5.164954 GGGAACGTAGCATGCAATTTAAAA 58.835 37.500 21.98 0.00 0.00 1.52
6628 10386 5.635700 GGGAACGTAGCATGCAATTTAAAAA 59.364 36.000 21.98 0.00 0.00 1.94
6658 10416 9.208022 TCTATGATCACGCAAAATTTATCTAGG 57.792 33.333 0.00 0.00 0.00 3.02
6659 10417 9.208022 CTATGATCACGCAAAATTTATCTAGGA 57.792 33.333 0.00 0.00 0.00 2.94
6660 10418 7.482654 TGATCACGCAAAATTTATCTAGGAG 57.517 36.000 0.00 0.00 0.00 3.69
6661 10419 7.272244 TGATCACGCAAAATTTATCTAGGAGA 58.728 34.615 0.00 0.00 0.00 3.71
6662 10420 7.933577 TGATCACGCAAAATTTATCTAGGAGAT 59.066 33.333 0.00 0.00 38.70 2.75
6663 10421 7.482654 TCACGCAAAATTTATCTAGGAGATG 57.517 36.000 0.00 0.00 35.37 2.90
6664 10422 6.017934 TCACGCAAAATTTATCTAGGAGATGC 60.018 38.462 0.00 0.00 35.37 3.91
6665 10423 5.822519 ACGCAAAATTTATCTAGGAGATGCA 59.177 36.000 0.00 0.00 35.37 3.96
6666 10424 6.488006 ACGCAAAATTTATCTAGGAGATGCAT 59.512 34.615 0.00 0.00 35.37 3.96
6667 10425 7.661437 ACGCAAAATTTATCTAGGAGATGCATA 59.339 33.333 0.00 0.00 35.37 3.14
6668 10426 8.173775 CGCAAAATTTATCTAGGAGATGCATAG 58.826 37.037 0.00 0.00 35.37 2.23
6669 10427 7.967303 GCAAAATTTATCTAGGAGATGCATAGC 59.033 37.037 0.00 0.00 35.37 2.97
6670 10428 9.006839 CAAAATTTATCTAGGAGATGCATAGCA 57.993 33.333 0.00 0.00 44.86 3.49
6671 10429 9.578576 AAAATTTATCTAGGAGATGCATAGCAA 57.421 29.630 0.00 0.00 43.62 3.91
6672 10430 8.558973 AATTTATCTAGGAGATGCATAGCAAC 57.441 34.615 0.00 0.00 43.62 4.17
6673 10431 3.650070 TCTAGGAGATGCATAGCAACG 57.350 47.619 0.00 0.00 43.62 4.10
6674 10432 3.222603 TCTAGGAGATGCATAGCAACGA 58.777 45.455 0.00 0.00 43.62 3.85
6675 10433 2.522836 AGGAGATGCATAGCAACGAG 57.477 50.000 0.00 0.00 43.62 4.18
6676 10434 2.034878 AGGAGATGCATAGCAACGAGA 58.965 47.619 0.00 0.00 43.62 4.04
6677 10435 2.035704 AGGAGATGCATAGCAACGAGAG 59.964 50.000 0.00 0.00 43.62 3.20
6678 10436 2.402305 GAGATGCATAGCAACGAGAGG 58.598 52.381 0.00 0.00 43.62 3.69
6679 10437 1.069823 AGATGCATAGCAACGAGAGGG 59.930 52.381 0.00 0.00 43.62 4.30
6680 10438 1.069204 GATGCATAGCAACGAGAGGGA 59.931 52.381 0.00 0.00 43.62 4.20
6681 10439 0.461548 TGCATAGCAACGAGAGGGAG 59.538 55.000 0.00 0.00 34.76 4.30
6682 10440 0.249657 GCATAGCAACGAGAGGGAGG 60.250 60.000 0.00 0.00 0.00 4.30
6683 10441 0.390860 CATAGCAACGAGAGGGAGGG 59.609 60.000 0.00 0.00 0.00 4.30
6684 10442 0.261991 ATAGCAACGAGAGGGAGGGA 59.738 55.000 0.00 0.00 0.00 4.20
6685 10443 0.395862 TAGCAACGAGAGGGAGGGAG 60.396 60.000 0.00 0.00 0.00 4.30
6686 10444 1.985116 GCAACGAGAGGGAGGGAGT 60.985 63.158 0.00 0.00 0.00 3.85
6687 10445 1.893786 CAACGAGAGGGAGGGAGTG 59.106 63.158 0.00 0.00 0.00 3.51
6688 10446 0.900647 CAACGAGAGGGAGGGAGTGT 60.901 60.000 0.00 0.00 0.00 3.55
6689 10447 0.900647 AACGAGAGGGAGGGAGTGTG 60.901 60.000 0.00 0.00 0.00 3.82
6690 10448 1.304547 CGAGAGGGAGGGAGTGTGT 60.305 63.158 0.00 0.00 0.00 3.72
6691 10449 1.316706 CGAGAGGGAGGGAGTGTGTC 61.317 65.000 0.00 0.00 0.00 3.67
6692 10450 0.973496 GAGAGGGAGGGAGTGTGTCC 60.973 65.000 0.00 0.00 46.10 4.02
6699 10457 4.981415 GGAGTGTGTCCACGTACC 57.019 61.111 0.00 0.00 46.10 3.34
6700 10458 1.291272 GGAGTGTGTCCACGTACCC 59.709 63.158 0.00 0.00 46.10 3.69
6701 10459 1.183676 GGAGTGTGTCCACGTACCCT 61.184 60.000 0.00 0.00 46.10 4.34
6702 10460 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
6703 10461 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
6704 10462 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
6705 10463 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
6706 10464 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
6707 10465 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
6708 10466 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
6709 10467 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
6710 10468 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
6711 10469 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
6712 10470 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
6713 10471 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
6714 10472 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
6715 10473 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
6716 10474 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
6731 10489 5.773239 CGAAAGCGGAAGAGTTATGTTAA 57.227 39.130 0.00 0.00 0.00 2.01
6732 10490 5.548250 CGAAAGCGGAAGAGTTATGTTAAC 58.452 41.667 0.00 0.00 0.00 2.01
6733 10491 5.526010 AAAGCGGAAGAGTTATGTTAACG 57.474 39.130 0.26 0.00 0.00 3.18
6734 10492 2.928116 AGCGGAAGAGTTATGTTAACGC 59.072 45.455 0.26 0.00 37.98 4.84
6735 10493 2.284855 GCGGAAGAGTTATGTTAACGCG 60.285 50.000 3.53 3.53 31.74 6.01
6736 10494 2.280708 CGGAAGAGTTATGTTAACGCGG 59.719 50.000 12.47 0.00 0.00 6.46
6737 10495 3.256558 GGAAGAGTTATGTTAACGCGGT 58.743 45.455 12.47 6.42 0.00 5.68
6738 10496 3.681417 GGAAGAGTTATGTTAACGCGGTT 59.319 43.478 12.47 5.03 0.00 4.44
6739 10497 4.435121 GGAAGAGTTATGTTAACGCGGTTG 60.435 45.833 12.47 0.00 0.00 3.77
6740 10498 3.916761 AGAGTTATGTTAACGCGGTTGA 58.083 40.909 12.47 0.00 0.00 3.18
6741 10499 4.501071 AGAGTTATGTTAACGCGGTTGAT 58.499 39.130 12.47 0.00 0.00 2.57
6742 10500 4.328983 AGAGTTATGTTAACGCGGTTGATG 59.671 41.667 12.47 0.00 0.00 3.07
6743 10501 3.998341 AGTTATGTTAACGCGGTTGATGT 59.002 39.130 12.47 0.00 0.00 3.06
6744 10502 5.170021 AGTTATGTTAACGCGGTTGATGTA 58.830 37.500 12.47 0.00 0.00 2.29
6745 10503 5.290158 AGTTATGTTAACGCGGTTGATGTAG 59.710 40.000 12.47 0.00 0.00 2.74
6746 10504 3.029320 TGTTAACGCGGTTGATGTAGT 57.971 42.857 12.47 0.00 0.00 2.73
6747 10505 2.988493 TGTTAACGCGGTTGATGTAGTC 59.012 45.455 12.47 0.00 0.00 2.59
6748 10506 1.898938 TAACGCGGTTGATGTAGTCG 58.101 50.000 12.47 0.00 0.00 4.18
6749 10507 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
6750 10508 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
6751 10509 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
6753 10511 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
6754 10512 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
6755 10513 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
6756 10514 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
6757 10515 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
6758 10516 4.224433 GTTGATGTAGTCGAACGTCTTCA 58.776 43.478 10.09 1.94 36.53 3.02
6759 10517 4.696899 TGATGTAGTCGAACGTCTTCAT 57.303 40.909 10.09 11.35 36.53 2.57
6760 10518 4.412207 TGATGTAGTCGAACGTCTTCATG 58.588 43.478 14.74 0.00 36.53 3.07
6761 10519 4.155280 TGATGTAGTCGAACGTCTTCATGA 59.845 41.667 14.74 0.00 36.53 3.07
6762 10520 4.696899 TGTAGTCGAACGTCTTCATGAT 57.303 40.909 0.00 0.00 0.00 2.45
6763 10521 4.659088 TGTAGTCGAACGTCTTCATGATC 58.341 43.478 0.00 0.00 0.00 2.92
6764 10522 3.152261 AGTCGAACGTCTTCATGATCC 57.848 47.619 0.00 0.00 0.00 3.36
6765 10523 2.492088 AGTCGAACGTCTTCATGATCCA 59.508 45.455 0.00 0.00 0.00 3.41
6766 10524 3.056821 AGTCGAACGTCTTCATGATCCAA 60.057 43.478 0.00 0.00 0.00 3.53
6767 10525 3.060895 GTCGAACGTCTTCATGATCCAAC 59.939 47.826 0.00 0.00 0.00 3.77
6768 10526 2.348666 CGAACGTCTTCATGATCCAACC 59.651 50.000 0.00 0.00 0.00 3.77
6769 10527 3.334691 GAACGTCTTCATGATCCAACCA 58.665 45.455 0.00 0.00 0.00 3.67
6770 10528 3.417069 ACGTCTTCATGATCCAACCAA 57.583 42.857 0.00 0.00 0.00 3.67
6771 10529 3.955471 ACGTCTTCATGATCCAACCAAT 58.045 40.909 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 125 4.103103 GAACGCGGGGCTGCTTTC 62.103 66.667 12.47 0.00 36.22 2.62
125 154 2.533266 GCTAAAGCGGCGACTAAAGTA 58.467 47.619 12.98 0.00 0.00 2.24
181 331 1.203635 TGGGGAGAAGGTGGGGAATTA 60.204 52.381 0.00 0.00 0.00 1.40
230 380 1.073923 AGAACCGGAAAAGCATGGACT 59.926 47.619 9.46 0.00 0.00 3.85
232 382 2.286365 AAGAACCGGAAAAGCATGGA 57.714 45.000 9.46 0.00 0.00 3.41
242 392 3.571401 GGATCGGATTAGTAAGAACCGGA 59.429 47.826 9.46 10.66 43.14 5.14
243 393 3.573110 AGGATCGGATTAGTAAGAACCGG 59.427 47.826 18.81 0.00 43.14 5.28
244 394 4.850347 AGGATCGGATTAGTAAGAACCG 57.150 45.455 15.26 15.26 44.09 4.44
245 395 6.436532 TGGATAGGATCGGATTAGTAAGAACC 59.563 42.308 0.00 0.00 0.00 3.62
246 396 7.314393 GTGGATAGGATCGGATTAGTAAGAAC 58.686 42.308 0.00 0.00 0.00 3.01
318 469 1.109323 GCACAGGTTCAAACTGCCCT 61.109 55.000 1.02 0.00 39.55 5.19
319 470 1.109323 AGCACAGGTTCAAACTGCCC 61.109 55.000 1.02 0.00 39.55 5.36
320 471 0.746659 AAGCACAGGTTCAAACTGCC 59.253 50.000 1.02 0.00 39.55 4.85
323 474 2.099756 GCAAGAAGCACAGGTTCAAACT 59.900 45.455 11.00 0.00 41.76 2.66
324 475 2.463876 GCAAGAAGCACAGGTTCAAAC 58.536 47.619 11.00 0.00 41.76 2.93
391 542 4.504916 CCTCCTCCTGCGACGCTG 62.505 72.222 22.08 20.24 0.00 5.18
392 543 4.742649 TCCTCCTCCTGCGACGCT 62.743 66.667 22.08 0.00 0.00 5.07
394 545 2.752238 AGTCCTCCTCCTGCGACG 60.752 66.667 0.00 0.00 0.00 5.12
395 546 1.251527 TTCAGTCCTCCTCCTGCGAC 61.252 60.000 0.00 0.00 0.00 5.19
397 548 1.403814 TATTCAGTCCTCCTCCTGCG 58.596 55.000 0.00 0.00 0.00 5.18
398 549 3.055094 TGTTTATTCAGTCCTCCTCCTGC 60.055 47.826 0.00 0.00 0.00 4.85
399 550 4.826274 TGTTTATTCAGTCCTCCTCCTG 57.174 45.455 0.00 0.00 0.00 3.86
400 551 5.046231 GTCTTGTTTATTCAGTCCTCCTCCT 60.046 44.000 0.00 0.00 0.00 3.69
401 552 5.179533 GTCTTGTTTATTCAGTCCTCCTCC 58.820 45.833 0.00 0.00 0.00 4.30
402 553 5.794894 TGTCTTGTTTATTCAGTCCTCCTC 58.205 41.667 0.00 0.00 0.00 3.71
403 554 5.280215 CCTGTCTTGTTTATTCAGTCCTCCT 60.280 44.000 0.00 0.00 0.00 3.69
404 555 4.938226 CCTGTCTTGTTTATTCAGTCCTCC 59.062 45.833 0.00 0.00 0.00 4.30
405 556 5.552178 ACCTGTCTTGTTTATTCAGTCCTC 58.448 41.667 0.00 0.00 0.00 3.71
406 557 5.568620 ACCTGTCTTGTTTATTCAGTCCT 57.431 39.130 0.00 0.00 0.00 3.85
407 558 5.531287 ACAACCTGTCTTGTTTATTCAGTCC 59.469 40.000 0.00 0.00 29.66 3.85
408 559 6.619801 ACAACCTGTCTTGTTTATTCAGTC 57.380 37.500 0.00 0.00 29.66 3.51
409 560 6.619801 GACAACCTGTCTTGTTTATTCAGT 57.380 37.500 0.00 0.00 43.73 3.41
423 574 2.088104 TCAGAGTCCAGACAACCTGT 57.912 50.000 0.00 0.00 41.33 4.00
424 575 2.366916 AGTTCAGAGTCCAGACAACCTG 59.633 50.000 0.00 4.86 42.55 4.00
425 576 2.366916 CAGTTCAGAGTCCAGACAACCT 59.633 50.000 0.00 0.00 0.00 3.50
426 577 2.548920 CCAGTTCAGAGTCCAGACAACC 60.549 54.545 0.00 0.00 0.00 3.77
427 578 2.548920 CCCAGTTCAGAGTCCAGACAAC 60.549 54.545 0.00 0.00 0.00 3.32
428 579 1.694150 CCCAGTTCAGAGTCCAGACAA 59.306 52.381 0.00 0.00 0.00 3.18
429 580 1.342074 CCCAGTTCAGAGTCCAGACA 58.658 55.000 0.00 0.00 0.00 3.41
430 581 0.036858 GCCCAGTTCAGAGTCCAGAC 60.037 60.000 0.00 0.00 0.00 3.51
431 582 0.178921 AGCCCAGTTCAGAGTCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
432 583 0.036577 CAGCCCAGTTCAGAGTCCAG 60.037 60.000 0.00 0.00 0.00 3.86
433 584 1.483595 CCAGCCCAGTTCAGAGTCCA 61.484 60.000 0.00 0.00 0.00 4.02
434 585 1.298014 CCAGCCCAGTTCAGAGTCC 59.702 63.158 0.00 0.00 0.00 3.85
435 586 1.298014 CCCAGCCCAGTTCAGAGTC 59.702 63.158 0.00 0.00 0.00 3.36
436 587 2.900106 GCCCAGCCCAGTTCAGAGT 61.900 63.158 0.00 0.00 0.00 3.24
437 588 2.045536 GCCCAGCCCAGTTCAGAG 60.046 66.667 0.00 0.00 0.00 3.35
438 589 2.202236 GATGCCCAGCCCAGTTCAGA 62.202 60.000 0.00 0.00 0.00 3.27
439 590 1.751927 GATGCCCAGCCCAGTTCAG 60.752 63.158 0.00 0.00 0.00 3.02
440 591 2.356278 GATGCCCAGCCCAGTTCA 59.644 61.111 0.00 0.00 0.00 3.18
441 592 2.048603 GTGATGCCCAGCCCAGTTC 61.049 63.158 0.00 0.00 0.00 3.01
442 593 2.036256 GTGATGCCCAGCCCAGTT 59.964 61.111 0.00 0.00 0.00 3.16
443 594 3.259314 TGTGATGCCCAGCCCAGT 61.259 61.111 0.00 0.00 0.00 4.00
444 595 2.439701 CTGTGATGCCCAGCCCAG 60.440 66.667 0.00 0.00 0.00 4.45
445 596 4.051167 CCTGTGATGCCCAGCCCA 62.051 66.667 0.00 0.00 0.00 5.36
448 599 4.783621 TCGCCTGTGATGCCCAGC 62.784 66.667 0.00 0.00 0.00 4.85
449 600 2.046023 TTCGCCTGTGATGCCCAG 60.046 61.111 0.00 0.00 0.00 4.45
450 601 2.359850 GTTCGCCTGTGATGCCCA 60.360 61.111 0.00 0.00 0.00 5.36
451 602 1.750399 ATGTTCGCCTGTGATGCCC 60.750 57.895 0.00 0.00 0.00 5.36
452 603 1.430632 CATGTTCGCCTGTGATGCC 59.569 57.895 0.00 0.00 0.00 4.40
453 604 1.026182 TCCATGTTCGCCTGTGATGC 61.026 55.000 0.00 0.00 0.00 3.91
454 605 0.729116 GTCCATGTTCGCCTGTGATG 59.271 55.000 0.00 0.00 0.00 3.07
455 606 0.740868 CGTCCATGTTCGCCTGTGAT 60.741 55.000 0.00 0.00 0.00 3.06
456 607 1.374125 CGTCCATGTTCGCCTGTGA 60.374 57.895 0.00 0.00 0.00 3.58
457 608 3.027170 GCGTCCATGTTCGCCTGTG 62.027 63.158 17.08 0.00 45.54 3.66
458 609 2.742372 GCGTCCATGTTCGCCTGT 60.742 61.111 17.08 0.00 45.54 4.00
463 614 2.431771 TGTCGGCGTCCATGTTCG 60.432 61.111 6.85 0.00 0.00 3.95
464 615 2.388232 GGTGTCGGCGTCCATGTTC 61.388 63.158 6.85 0.00 0.00 3.18
465 616 2.358247 GGTGTCGGCGTCCATGTT 60.358 61.111 6.85 0.00 0.00 2.71
466 617 3.589654 CTGGTGTCGGCGTCCATGT 62.590 63.158 17.40 0.00 0.00 3.21
467 618 2.220615 TACTGGTGTCGGCGTCCATG 62.221 60.000 17.40 14.30 0.00 3.66
468 619 1.327690 ATACTGGTGTCGGCGTCCAT 61.328 55.000 17.40 11.98 0.00 3.41
469 620 1.980232 ATACTGGTGTCGGCGTCCA 60.980 57.895 6.85 13.23 0.00 4.02
470 621 1.518572 CATACTGGTGTCGGCGTCC 60.519 63.158 6.85 9.09 0.00 4.79
471 622 1.076533 CACATACTGGTGTCGGCGTC 61.077 60.000 6.85 0.72 34.09 5.19
472 623 1.080093 CACATACTGGTGTCGGCGT 60.080 57.895 6.85 0.00 34.09 5.68
473 624 2.452813 GCACATACTGGTGTCGGCG 61.453 63.158 0.00 0.00 40.89 6.46
474 625 2.452813 CGCACATACTGGTGTCGGC 61.453 63.158 0.00 0.00 40.89 5.54
475 626 1.076533 GACGCACATACTGGTGTCGG 61.077 60.000 12.17 0.00 40.24 4.79
476 627 1.076533 GGACGCACATACTGGTGTCG 61.077 60.000 0.00 0.00 43.58 4.35
477 628 0.246635 AGGACGCACATACTGGTGTC 59.753 55.000 0.00 0.00 42.31 3.67
478 629 0.246635 GAGGACGCACATACTGGTGT 59.753 55.000 0.00 0.00 40.89 4.16
479 630 0.802222 CGAGGACGCACATACTGGTG 60.802 60.000 0.00 0.00 41.72 4.17
480 631 1.248785 ACGAGGACGCACATACTGGT 61.249 55.000 0.00 0.00 43.96 4.00
481 632 0.736636 TACGAGGACGCACATACTGG 59.263 55.000 0.00 0.00 43.96 4.00
482 633 2.776312 ATACGAGGACGCACATACTG 57.224 50.000 0.00 0.00 43.96 2.74
483 634 3.795623 AAATACGAGGACGCACATACT 57.204 42.857 0.00 0.00 43.96 2.12
484 635 6.019318 ACAATAAAATACGAGGACGCACATAC 60.019 38.462 0.00 0.00 43.96 2.39
485 636 6.044046 ACAATAAAATACGAGGACGCACATA 58.956 36.000 0.00 0.00 43.96 2.29
486 637 4.873827 ACAATAAAATACGAGGACGCACAT 59.126 37.500 0.00 0.00 43.96 3.21
487 638 4.247258 ACAATAAAATACGAGGACGCACA 58.753 39.130 0.00 0.00 43.96 4.57
488 639 4.852609 ACAATAAAATACGAGGACGCAC 57.147 40.909 0.00 0.00 43.96 5.34
489 640 5.868258 TGTAACAATAAAATACGAGGACGCA 59.132 36.000 0.00 0.00 43.96 5.24
490 641 6.335176 TGTAACAATAAAATACGAGGACGC 57.665 37.500 0.00 0.00 43.96 5.19
491 642 6.898189 GCTTGTAACAATAAAATACGAGGACG 59.102 38.462 0.00 0.00 45.75 4.79
492 643 7.065443 AGGCTTGTAACAATAAAATACGAGGAC 59.935 37.037 0.00 0.00 33.49 3.85
493 644 7.107542 AGGCTTGTAACAATAAAATACGAGGA 58.892 34.615 0.00 0.00 33.49 3.71
494 645 7.065324 TGAGGCTTGTAACAATAAAATACGAGG 59.935 37.037 0.00 0.00 33.49 4.63
495 646 7.970384 TGAGGCTTGTAACAATAAAATACGAG 58.030 34.615 0.00 0.00 35.19 4.18
496 647 7.908827 TGAGGCTTGTAACAATAAAATACGA 57.091 32.000 0.00 0.00 0.00 3.43
497 648 8.234546 ACTTGAGGCTTGTAACAATAAAATACG 58.765 33.333 0.00 0.00 0.00 3.06
498 649 9.556030 GACTTGAGGCTTGTAACAATAAAATAC 57.444 33.333 0.00 0.00 0.00 1.89
499 650 9.515226 AGACTTGAGGCTTGTAACAATAAAATA 57.485 29.630 0.00 0.00 0.00 1.40
500 651 8.409358 AGACTTGAGGCTTGTAACAATAAAAT 57.591 30.769 0.00 0.00 0.00 1.82
514 665 7.449704 ACATAATCAAAAGAAAGACTTGAGGCT 59.550 33.333 0.00 0.00 38.98 4.58
515 666 7.597386 ACATAATCAAAAGAAAGACTTGAGGC 58.403 34.615 0.00 0.00 38.98 4.70
516 667 9.971922 AAACATAATCAAAAGAAAGACTTGAGG 57.028 29.630 0.00 0.00 38.98 3.86
518 669 9.748708 CCAAACATAATCAAAAGAAAGACTTGA 57.251 29.630 0.00 0.00 38.98 3.02
519 670 9.533253 ACCAAACATAATCAAAAGAAAGACTTG 57.467 29.630 0.00 0.00 38.98 3.16
520 671 9.750125 GACCAAACATAATCAAAAGAAAGACTT 57.250 29.630 0.00 0.00 40.98 3.01
521 672 9.136323 AGACCAAACATAATCAAAAGAAAGACT 57.864 29.630 0.00 0.00 0.00 3.24
522 673 9.185192 CAGACCAAACATAATCAAAAGAAAGAC 57.815 33.333 0.00 0.00 0.00 3.01
524 675 9.185192 GACAGACCAAACATAATCAAAAGAAAG 57.815 33.333 0.00 0.00 0.00 2.62
525 676 8.912988 AGACAGACCAAACATAATCAAAAGAAA 58.087 29.630 0.00 0.00 0.00 2.52
527 678 7.522073 GCAGACAGACCAAACATAATCAAAAGA 60.522 37.037 0.00 0.00 0.00 2.52
528 679 6.583806 GCAGACAGACCAAACATAATCAAAAG 59.416 38.462 0.00 0.00 0.00 2.27
568 729 9.086758 AGCTTTGGTAGATTAGTATAACGGTAT 57.913 33.333 0.00 0.00 0.00 2.73
577 738 8.764558 TGGTCATAAAGCTTTGGTAGATTAGTA 58.235 33.333 22.02 0.00 30.84 1.82
578 739 7.630082 TGGTCATAAAGCTTTGGTAGATTAGT 58.370 34.615 22.02 0.00 30.84 2.24
579 740 8.506168 TTGGTCATAAAGCTTTGGTAGATTAG 57.494 34.615 22.02 0.00 30.84 1.73
580 741 8.871629 TTTGGTCATAAAGCTTTGGTAGATTA 57.128 30.769 22.02 0.00 30.84 1.75
586 747 5.056480 GCTTTTTGGTCATAAAGCTTTGGT 58.944 37.500 22.02 7.50 45.51 3.67
595 756 3.976169 GCACACAGCTTTTTGGTCATAA 58.024 40.909 0.00 0.00 41.15 1.90
612 773 0.109153 ATGGACAGCTGTGAAGCACA 59.891 50.000 27.27 13.09 42.45 4.57
636 797 7.719633 GGTATGAAATTCTTAACTGCCCTCATA 59.280 37.037 0.00 0.00 0.00 2.15
663 824 9.755064 GTTGTGTTGTGCATTTTATAGTAGTAG 57.245 33.333 0.00 0.00 0.00 2.57
664 825 9.496873 AGTTGTGTTGTGCATTTTATAGTAGTA 57.503 29.630 0.00 0.00 0.00 1.82
665 826 8.289618 CAGTTGTGTTGTGCATTTTATAGTAGT 58.710 33.333 0.00 0.00 0.00 2.73
703 870 7.931407 TCCTTTGCACATGTATTAGTAGTATGG 59.069 37.037 0.00 0.00 0.00 2.74
747 917 2.351060 CGTACTGTAGTTTGGCTGTCGA 60.351 50.000 0.00 0.00 0.00 4.20
823 1019 1.380785 ATAGTCGTTGCGAGGGGGA 60.381 57.895 0.00 0.00 36.23 4.81
825 1021 1.883084 GCATAGTCGTTGCGAGGGG 60.883 63.158 0.00 0.00 36.23 4.79
831 1027 2.472909 GCAGGGGCATAGTCGTTGC 61.473 63.158 0.00 0.00 40.72 4.17
871 1067 0.810648 ACGGACCGCACTATAACGAA 59.189 50.000 15.39 0.00 0.00 3.85
872 1068 0.378257 GACGGACCGCACTATAACGA 59.622 55.000 15.39 0.00 0.00 3.85
873 1069 0.593263 GGACGGACCGCACTATAACG 60.593 60.000 15.39 0.00 0.00 3.18
874 1070 0.249197 GGGACGGACCGCACTATAAC 60.249 60.000 15.39 0.00 40.11 1.89
908 1104 0.743097 GCAGGCCTTGATCATGGAAC 59.257 55.000 27.35 19.13 0.00 3.62
961 1162 2.125961 GTGAGGACGGCGGGAGTAT 61.126 63.158 13.24 0.00 0.00 2.12
1221 1442 4.682334 TACTGGTCCGGTCCGCCA 62.682 66.667 6.62 8.15 34.09 5.69
1227 1448 3.688159 GCCGTGTACTGGTCCGGT 61.688 66.667 8.79 8.79 42.36 5.28
1502 1729 4.023878 CGGGCATGAGTTCTAGTACTACTC 60.024 50.000 14.78 14.78 38.96 2.59
1504 1731 3.881688 TCGGGCATGAGTTCTAGTACTAC 59.118 47.826 1.51 0.00 0.00 2.73
1506 1733 3.014304 TCGGGCATGAGTTCTAGTACT 57.986 47.619 1.04 1.04 0.00 2.73
1507 1734 3.553096 CCATCGGGCATGAGTTCTAGTAC 60.553 52.174 0.00 0.00 33.80 2.73
1508 1735 2.628178 CCATCGGGCATGAGTTCTAGTA 59.372 50.000 0.00 0.00 33.80 1.82
1561 1788 8.553459 ACAACATGAACGAAAATATCTTCTCT 57.447 30.769 0.00 0.00 0.00 3.10
1562 1789 9.690434 GTACAACATGAACGAAAATATCTTCTC 57.310 33.333 0.00 0.00 0.00 2.87
1567 1794 6.687105 GGCAGTACAACATGAACGAAAATATC 59.313 38.462 0.00 0.00 0.00 1.63
1569 1796 5.470437 TGGCAGTACAACATGAACGAAAATA 59.530 36.000 0.00 0.00 0.00 1.40
1571 1798 3.628032 TGGCAGTACAACATGAACGAAAA 59.372 39.130 0.00 0.00 0.00 2.29
1572 1799 3.002862 GTGGCAGTACAACATGAACGAAA 59.997 43.478 0.00 0.00 0.00 3.46
1575 1802 2.143122 AGTGGCAGTACAACATGAACG 58.857 47.619 0.00 0.00 0.00 3.95
1576 1803 4.315803 ACTAGTGGCAGTACAACATGAAC 58.684 43.478 0.00 0.00 0.00 3.18
1578 1805 4.617253 AACTAGTGGCAGTACAACATGA 57.383 40.909 0.00 0.00 0.00 3.07
1579 1806 5.234752 TGTAACTAGTGGCAGTACAACATG 58.765 41.667 0.00 0.00 0.00 3.21
1580 1807 5.011738 ACTGTAACTAGTGGCAGTACAACAT 59.988 40.000 23.13 5.07 40.00 2.71
1587 1814 2.890814 AGGACTGTAACTAGTGGCAGT 58.109 47.619 24.07 24.07 43.85 4.40
1590 1817 3.326747 CACAAGGACTGTAACTAGTGGC 58.673 50.000 0.00 0.00 36.10 5.01
1595 1822 2.029649 GTCGGCACAAGGACTGTAACTA 60.030 50.000 0.00 0.00 36.10 2.24
1596 1823 1.045407 TCGGCACAAGGACTGTAACT 58.955 50.000 0.00 0.00 36.10 2.24
1683 1914 6.073003 GCTTTCACAGTTTTCTACTAGCATGT 60.073 38.462 0.00 0.00 34.83 3.21
1686 1917 4.755123 GGCTTTCACAGTTTTCTACTAGCA 59.245 41.667 0.00 0.00 35.89 3.49
1687 1918 4.998033 AGGCTTTCACAGTTTTCTACTAGC 59.002 41.667 0.00 0.00 34.56 3.42
1688 1919 6.931840 AGAAGGCTTTCACAGTTTTCTACTAG 59.068 38.462 11.53 0.00 33.69 2.57
1689 1920 6.827727 AGAAGGCTTTCACAGTTTTCTACTA 58.172 36.000 11.53 0.00 33.69 1.82
1690 1921 5.685728 AGAAGGCTTTCACAGTTTTCTACT 58.314 37.500 11.53 0.00 34.94 2.57
1691 1922 6.378710 AAGAAGGCTTTCACAGTTTTCTAC 57.621 37.500 11.53 0.00 35.70 2.59
1700 1931 6.767524 TTTGAACTAAAGAAGGCTTTCACA 57.232 33.333 11.53 0.00 43.08 3.58
1757 1988 3.632145 AGTTGCAATCCGAAAAACTCTGT 59.368 39.130 0.59 0.00 0.00 3.41
1775 2006 5.350914 TGTGATTTTCAACCTTGCAAAGTTG 59.649 36.000 27.70 27.70 44.25 3.16
1776 2007 5.486526 TGTGATTTTCAACCTTGCAAAGTT 58.513 33.333 7.63 7.63 44.25 2.66
1777 2008 5.083533 TGTGATTTTCAACCTTGCAAAGT 57.916 34.783 0.00 0.00 44.25 2.66
1778 2009 4.508861 CCTGTGATTTTCAACCTTGCAAAG 59.491 41.667 0.00 0.00 45.69 2.77
1857 2089 7.440856 AGGTGCATTACATCGTTTTCAATTTTT 59.559 29.630 0.00 0.00 33.17 1.94
1864 2096 7.016361 AGATTAGGTGCATTACATCGTTTTC 57.984 36.000 0.00 0.00 33.17 2.29
1866 2098 7.120579 TGAAAGATTAGGTGCATTACATCGTTT 59.879 33.333 0.00 0.00 33.17 3.60
1883 2115 9.063615 GGAAACAGTACCTTTCTTGAAAGATTA 57.936 33.333 20.76 10.85 34.49 1.75
1910 2142 4.045104 GACGTTGTCTTCTCGCATCATAT 58.955 43.478 0.00 0.00 0.00 1.78
2094 2341 5.532032 CCTTTTAGTTTGTCCCGGACTTTTA 59.468 40.000 18.54 3.81 33.15 1.52
2102 2349 3.136009 AGGTCCTTTTAGTTTGTCCCG 57.864 47.619 0.00 0.00 0.00 5.14
2117 2364 1.138266 TCCTGCAAATACGCTAGGTCC 59.862 52.381 0.00 0.00 34.08 4.46
2127 2374 0.403655 TGTGGCCTGTCCTGCAAATA 59.596 50.000 3.32 0.00 35.26 1.40
2128 2375 0.251922 ATGTGGCCTGTCCTGCAAAT 60.252 50.000 3.32 0.00 35.26 2.32
2135 2384 1.377725 CCAGTCATGTGGCCTGTCC 60.378 63.158 3.32 0.00 0.00 4.02
2146 2395 3.424703 ACATTTGTTAGCAGCCAGTCAT 58.575 40.909 0.00 0.00 0.00 3.06
2171 2420 6.977502 CACATGTGGTGTAATTGACTCAAAAA 59.022 34.615 18.51 0.00 42.75 1.94
2892 3533 7.491372 CCGCCTCGATATATAATGTACAATTGT 59.509 37.037 16.68 16.68 0.00 2.71
4174 4871 3.751518 GACACCCTACTGACCATTTTGT 58.248 45.455 0.00 0.00 0.00 2.83
4668 5369 1.742761 ACCAATGCCTTCATCACTCG 58.257 50.000 0.00 0.00 31.27 4.18
4690 5393 9.203421 GAACAAAATAATCAAACCTAAGTTGGG 57.797 33.333 3.26 3.26 35.97 4.12
4691 5394 9.203421 GGAACAAAATAATCAAACCTAAGTTGG 57.797 33.333 0.00 0.00 35.97 3.77
4695 5398 7.817478 GTGGGGAACAAAATAATCAAACCTAAG 59.183 37.037 0.00 0.00 0.00 2.18
4755 5458 6.989659 TCTTTACTTGGTCACGAAACTAGAT 58.010 36.000 0.00 0.00 0.00 1.98
4898 5623 5.564259 GCAAATTAGCACCATCTCCATCATC 60.564 44.000 0.00 0.00 0.00 2.92
4903 5628 3.018856 CTGCAAATTAGCACCATCTCCA 58.981 45.455 0.00 0.00 40.11 3.86
4927 5656 1.074405 TCTGCTTCAATTGCTCCAGGT 59.926 47.619 14.71 0.00 0.00 4.00
4933 5662 2.229543 TGCGAATTCTGCTTCAATTGCT 59.770 40.909 18.44 0.00 0.00 3.91
5012 5741 1.533625 CCGCTCTTGGGAATGAACAA 58.466 50.000 0.00 0.00 0.00 2.83
5086 5815 5.746307 ATTGACTCGCGTAGTACTTGATA 57.254 39.130 5.77 0.00 39.07 2.15
5370 6561 5.696270 GGAGTGCGATGATATACATTGTTGA 59.304 40.000 0.00 0.00 41.21 3.18
5437 6633 8.474025 CAATCCTTCTCTAGTCTCTACAAACAT 58.526 37.037 0.00 0.00 0.00 2.71
5439 6635 6.754675 GCAATCCTTCTCTAGTCTCTACAAAC 59.245 42.308 0.00 0.00 0.00 2.93
5441 6637 6.191315 AGCAATCCTTCTCTAGTCTCTACAA 58.809 40.000 0.00 0.00 0.00 2.41
5442 6638 5.761205 AGCAATCCTTCTCTAGTCTCTACA 58.239 41.667 0.00 0.00 0.00 2.74
5443 6639 6.430000 CCTAGCAATCCTTCTCTAGTCTCTAC 59.570 46.154 0.00 0.00 0.00 2.59
5444 6640 6.330514 TCCTAGCAATCCTTCTCTAGTCTCTA 59.669 42.308 0.00 0.00 0.00 2.43
5445 6641 5.133660 TCCTAGCAATCCTTCTCTAGTCTCT 59.866 44.000 0.00 0.00 0.00 3.10
5446 6642 5.240844 GTCCTAGCAATCCTTCTCTAGTCTC 59.759 48.000 0.00 0.00 0.00 3.36
5447 6643 5.137551 GTCCTAGCAATCCTTCTCTAGTCT 58.862 45.833 0.00 0.00 0.00 3.24
5448 6644 4.890581 TGTCCTAGCAATCCTTCTCTAGTC 59.109 45.833 0.00 0.00 0.00 2.59
5449 6645 4.873010 TGTCCTAGCAATCCTTCTCTAGT 58.127 43.478 0.00 0.00 0.00 2.57
5450 6646 5.362430 AGTTGTCCTAGCAATCCTTCTCTAG 59.638 44.000 0.00 0.00 0.00 2.43
5479 6681 5.106475 TGGTTGTTAGACCAAAATATCGTGC 60.106 40.000 0.00 0.00 46.33 5.34
5512 6714 2.040813 AGCTCCAATGTCCTGAACACAT 59.959 45.455 0.00 0.00 41.75 3.21
5519 6721 2.271800 GACGTTAGCTCCAATGTCCTG 58.728 52.381 9.56 0.00 38.13 3.86
5527 6729 1.153647 CATGGCGACGTTAGCTCCA 60.154 57.895 14.93 2.24 34.52 3.86
5765 6967 5.010719 AGTTCGTTACTCCTCATTTCAGTCA 59.989 40.000 0.00 0.00 28.23 3.41
5792 6994 4.540359 ACATTTTGACCATGTTCCATGG 57.460 40.909 19.19 19.19 44.54 3.66
5911 7115 9.438291 CGGCACTAGACATGAAAAATTAAATAG 57.562 33.333 0.00 0.00 0.00 1.73
5913 7117 6.751888 GCGGCACTAGACATGAAAAATTAAAT 59.248 34.615 0.00 0.00 0.00 1.40
5914 7118 6.072175 AGCGGCACTAGACATGAAAAATTAAA 60.072 34.615 0.00 0.00 0.00 1.52
5917 7121 3.758554 AGCGGCACTAGACATGAAAAATT 59.241 39.130 0.00 0.00 0.00 1.82
5944 7149 1.308998 AGCACACACACTACAAAGCC 58.691 50.000 0.00 0.00 0.00 4.35
6011 7218 2.231820 AAAAAGAACTCGGGCGACG 58.768 52.632 0.00 0.00 46.11 5.12
6161 7368 4.345859 TCCAAAAAGCTTCGGAGTTCTA 57.654 40.909 0.00 0.00 0.00 2.10
6170 7377 5.047188 TGGATTTTCGTTCCAAAAAGCTTC 58.953 37.500 0.00 0.00 40.29 3.86
6197 8678 9.487442 AAAATGGTGAGGGCTTAATTATTCTTA 57.513 29.630 0.00 0.00 0.00 2.10
6262 8748 6.095440 ACATGGTAGAATTTCTTATTTGCGCT 59.905 34.615 9.73 0.00 0.00 5.92
6313 10069 4.188462 CCTTTATGCGTCAAGTGGTGATA 58.812 43.478 0.00 0.00 38.90 2.15
6337 10093 8.768397 TGTCTCAAAACATGGTAATACCTCTAT 58.232 33.333 11.16 0.00 39.58 1.98
6391 10147 4.987285 GCATGTAGATCGATCACAGATGTT 59.013 41.667 26.47 10.57 0.00 2.71
6420 10176 3.372206 GCACACGTTGATCTTTAGAGCAT 59.628 43.478 0.00 0.00 40.42 3.79
6437 10193 2.665185 GGAGTGACGTGGGCACAC 60.665 66.667 9.72 9.72 44.23 3.82
6443 10199 2.650116 CCCCTCAGGAGTGACGTGG 61.650 68.421 0.00 0.00 38.24 4.94
6445 10201 2.997897 GCCCCTCAGGAGTGACGT 60.998 66.667 0.00 0.00 38.24 4.34
6462 10218 0.660595 CTAGGTTATCGCTCGTGCCG 60.661 60.000 3.52 0.00 35.36 5.69
6495 10251 4.742649 TGAGGAGGAGCGGCGAGT 62.743 66.667 12.98 0.00 0.00 4.18
6496 10252 4.200283 GTGAGGAGGAGCGGCGAG 62.200 72.222 12.98 0.00 0.00 5.03
6497 10253 4.742649 AGTGAGGAGGAGCGGCGA 62.743 66.667 12.98 0.00 0.00 5.54
6498 10254 4.200283 GAGTGAGGAGGAGCGGCG 62.200 72.222 0.51 0.51 0.00 6.46
6499 10255 3.844090 GGAGTGAGGAGGAGCGGC 61.844 72.222 0.00 0.00 0.00 6.53
6502 10258 1.904032 CAAGGGAGTGAGGAGGAGC 59.096 63.158 0.00 0.00 0.00 4.70
6503 10259 1.621672 GGCAAGGGAGTGAGGAGGAG 61.622 65.000 0.00 0.00 0.00 3.69
6504 10260 1.613630 GGCAAGGGAGTGAGGAGGA 60.614 63.158 0.00 0.00 0.00 3.71
6505 10261 1.920325 TGGCAAGGGAGTGAGGAGG 60.920 63.158 0.00 0.00 0.00 4.30
6558 10316 3.850173 TGTAGGAAGGCCCAAGTATTTCT 59.150 43.478 0.00 0.00 37.41 2.52
6559 10317 4.230745 TGTAGGAAGGCCCAAGTATTTC 57.769 45.455 0.00 0.00 37.41 2.17
6560 10318 4.668138 TTGTAGGAAGGCCCAAGTATTT 57.332 40.909 0.00 0.00 37.41 1.40
6561 10319 4.478686 AGATTGTAGGAAGGCCCAAGTATT 59.521 41.667 0.00 0.00 37.41 1.89
6562 10320 4.047883 AGATTGTAGGAAGGCCCAAGTAT 58.952 43.478 0.00 0.00 37.41 2.12
6563 10321 3.460825 AGATTGTAGGAAGGCCCAAGTA 58.539 45.455 0.00 0.00 37.41 2.24
6564 10322 2.279173 AGATTGTAGGAAGGCCCAAGT 58.721 47.619 0.00 0.00 37.41 3.16
6565 10323 3.054065 AGAAGATTGTAGGAAGGCCCAAG 60.054 47.826 0.00 0.00 37.41 3.61
6566 10324 2.919602 AGAAGATTGTAGGAAGGCCCAA 59.080 45.455 0.00 0.00 37.41 4.12
6567 10325 2.562296 AGAAGATTGTAGGAAGGCCCA 58.438 47.619 0.00 0.00 37.41 5.36
6568 10326 3.653835 AAGAAGATTGTAGGAAGGCCC 57.346 47.619 0.00 0.00 33.31 5.80
6569 10327 3.623510 CGAAAGAAGATTGTAGGAAGGCC 59.376 47.826 0.00 0.00 0.00 5.19
6570 10328 4.093556 CACGAAAGAAGATTGTAGGAAGGC 59.906 45.833 0.00 0.00 0.00 4.35
6571 10329 5.479306 TCACGAAAGAAGATTGTAGGAAGG 58.521 41.667 0.00 0.00 0.00 3.46
6572 10330 7.331934 TCAATCACGAAAGAAGATTGTAGGAAG 59.668 37.037 12.42 0.00 46.57 3.46
6573 10331 7.158697 TCAATCACGAAAGAAGATTGTAGGAA 58.841 34.615 12.42 0.00 46.57 3.36
6574 10332 6.697395 TCAATCACGAAAGAAGATTGTAGGA 58.303 36.000 12.42 0.00 46.57 2.94
6575 10333 6.968131 TCAATCACGAAAGAAGATTGTAGG 57.032 37.500 12.42 0.00 46.57 3.18
6578 10336 8.400947 CCAATATCAATCACGAAAGAAGATTGT 58.599 33.333 12.42 5.12 46.57 2.71
6580 10338 7.013655 CCCCAATATCAATCACGAAAGAAGATT 59.986 37.037 0.00 0.00 38.92 2.40
6581 10339 6.488006 CCCCAATATCAATCACGAAAGAAGAT 59.512 38.462 0.00 0.00 0.00 2.40
6582 10340 5.822519 CCCCAATATCAATCACGAAAGAAGA 59.177 40.000 0.00 0.00 0.00 2.87
6583 10341 5.822519 TCCCCAATATCAATCACGAAAGAAG 59.177 40.000 0.00 0.00 0.00 2.85
6584 10342 5.750524 TCCCCAATATCAATCACGAAAGAA 58.249 37.500 0.00 0.00 0.00 2.52
6585 10343 5.366482 TCCCCAATATCAATCACGAAAGA 57.634 39.130 0.00 0.00 0.00 2.52
6586 10344 5.504010 CGTTCCCCAATATCAATCACGAAAG 60.504 44.000 0.00 0.00 0.00 2.62
6587 10345 4.334203 CGTTCCCCAATATCAATCACGAAA 59.666 41.667 0.00 0.00 0.00 3.46
6588 10346 3.874543 CGTTCCCCAATATCAATCACGAA 59.125 43.478 0.00 0.00 0.00 3.85
6589 10347 3.118555 ACGTTCCCCAATATCAATCACGA 60.119 43.478 0.00 0.00 0.00 4.35
6590 10348 3.202906 ACGTTCCCCAATATCAATCACG 58.797 45.455 0.00 0.00 0.00 4.35
6591 10349 4.213482 GCTACGTTCCCCAATATCAATCAC 59.787 45.833 0.00 0.00 0.00 3.06
6592 10350 4.141597 TGCTACGTTCCCCAATATCAATCA 60.142 41.667 0.00 0.00 0.00 2.57
6593 10351 4.385825 TGCTACGTTCCCCAATATCAATC 58.614 43.478 0.00 0.00 0.00 2.67
6594 10352 4.431416 TGCTACGTTCCCCAATATCAAT 57.569 40.909 0.00 0.00 0.00 2.57
6595 10353 3.916359 TGCTACGTTCCCCAATATCAA 57.084 42.857 0.00 0.00 0.00 2.57
6596 10354 3.738982 CATGCTACGTTCCCCAATATCA 58.261 45.455 0.00 0.00 0.00 2.15
6597 10355 2.484264 GCATGCTACGTTCCCCAATATC 59.516 50.000 11.37 0.00 0.00 1.63
6598 10356 2.158682 TGCATGCTACGTTCCCCAATAT 60.159 45.455 20.33 0.00 0.00 1.28
6599 10357 1.210722 TGCATGCTACGTTCCCCAATA 59.789 47.619 20.33 0.00 0.00 1.90
6600 10358 0.034574 TGCATGCTACGTTCCCCAAT 60.035 50.000 20.33 0.00 0.00 3.16
6601 10359 0.250945 TTGCATGCTACGTTCCCCAA 60.251 50.000 20.33 0.00 0.00 4.12
6602 10360 0.034574 ATTGCATGCTACGTTCCCCA 60.035 50.000 20.33 0.00 0.00 4.96
6603 10361 1.102978 AATTGCATGCTACGTTCCCC 58.897 50.000 20.33 0.00 0.00 4.81
6604 10362 2.939460 AAATTGCATGCTACGTTCCC 57.061 45.000 20.33 0.00 0.00 3.97
6605 10363 6.698359 TTTTTAAATTGCATGCTACGTTCC 57.302 33.333 20.33 0.00 0.00 3.62
6632 10390 9.208022 CCTAGATAAATTTTGCGTGATCATAGA 57.792 33.333 0.00 0.00 0.00 1.98
6633 10391 9.208022 TCCTAGATAAATTTTGCGTGATCATAG 57.792 33.333 0.00 0.00 0.00 2.23
6634 10392 9.208022 CTCCTAGATAAATTTTGCGTGATCATA 57.792 33.333 0.00 0.00 0.00 2.15
6635 10393 7.933577 TCTCCTAGATAAATTTTGCGTGATCAT 59.066 33.333 0.00 0.00 0.00 2.45
6636 10394 7.272244 TCTCCTAGATAAATTTTGCGTGATCA 58.728 34.615 0.00 0.00 0.00 2.92
6637 10395 7.715265 TCTCCTAGATAAATTTTGCGTGATC 57.285 36.000 0.00 0.00 0.00 2.92
6638 10396 7.308229 GCATCTCCTAGATAAATTTTGCGTGAT 60.308 37.037 0.00 0.00 32.12 3.06
6639 10397 6.017934 GCATCTCCTAGATAAATTTTGCGTGA 60.018 38.462 0.00 0.00 32.12 4.35
6640 10398 6.138761 GCATCTCCTAGATAAATTTTGCGTG 58.861 40.000 0.00 0.00 32.12 5.34
6641 10399 5.822519 TGCATCTCCTAGATAAATTTTGCGT 59.177 36.000 0.00 0.00 32.12 5.24
6642 10400 6.304356 TGCATCTCCTAGATAAATTTTGCG 57.696 37.500 0.00 0.00 32.12 4.85
6643 10401 7.967303 GCTATGCATCTCCTAGATAAATTTTGC 59.033 37.037 0.19 0.00 32.12 3.68
6644 10402 9.006839 TGCTATGCATCTCCTAGATAAATTTTG 57.993 33.333 0.19 0.00 32.12 2.44
6645 10403 9.578576 TTGCTATGCATCTCCTAGATAAATTTT 57.421 29.630 0.19 0.00 38.76 1.82
6646 10404 9.007901 GTTGCTATGCATCTCCTAGATAAATTT 57.992 33.333 0.19 0.00 38.76 1.82
6647 10405 7.332926 CGTTGCTATGCATCTCCTAGATAAATT 59.667 37.037 0.19 0.00 38.76 1.82
6648 10406 6.815641 CGTTGCTATGCATCTCCTAGATAAAT 59.184 38.462 0.19 0.00 38.76 1.40
6649 10407 6.015434 TCGTTGCTATGCATCTCCTAGATAAA 60.015 38.462 0.19 0.00 38.76 1.40
6650 10408 5.476945 TCGTTGCTATGCATCTCCTAGATAA 59.523 40.000 0.19 0.00 38.76 1.75
6651 10409 5.010282 TCGTTGCTATGCATCTCCTAGATA 58.990 41.667 0.19 0.00 38.76 1.98
6652 10410 3.829026 TCGTTGCTATGCATCTCCTAGAT 59.171 43.478 0.19 0.00 38.76 1.98
6653 10411 3.222603 TCGTTGCTATGCATCTCCTAGA 58.777 45.455 0.19 0.00 38.76 2.43
6654 10412 3.254411 TCTCGTTGCTATGCATCTCCTAG 59.746 47.826 0.19 0.00 38.76 3.02
6655 10413 3.222603 TCTCGTTGCTATGCATCTCCTA 58.777 45.455 0.19 0.00 38.76 2.94
6656 10414 2.034878 TCTCGTTGCTATGCATCTCCT 58.965 47.619 0.19 0.00 38.76 3.69
6657 10415 2.402305 CTCTCGTTGCTATGCATCTCC 58.598 52.381 0.19 0.00 38.76 3.71
6658 10416 2.402305 CCTCTCGTTGCTATGCATCTC 58.598 52.381 0.19 0.00 38.76 2.75
6659 10417 1.069823 CCCTCTCGTTGCTATGCATCT 59.930 52.381 0.19 0.00 38.76 2.90
6660 10418 1.069204 TCCCTCTCGTTGCTATGCATC 59.931 52.381 0.19 0.00 38.76 3.91
6661 10419 1.069823 CTCCCTCTCGTTGCTATGCAT 59.930 52.381 3.79 3.79 38.76 3.96
6662 10420 0.461548 CTCCCTCTCGTTGCTATGCA 59.538 55.000 0.00 0.00 36.47 3.96
6663 10421 0.249657 CCTCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
6664 10422 0.390860 CCCTCCCTCTCGTTGCTATG 59.609 60.000 0.00 0.00 0.00 2.23
6665 10423 0.261991 TCCCTCCCTCTCGTTGCTAT 59.738 55.000 0.00 0.00 0.00 2.97
6666 10424 0.395862 CTCCCTCCCTCTCGTTGCTA 60.396 60.000 0.00 0.00 0.00 3.49
6667 10425 1.684049 CTCCCTCCCTCTCGTTGCT 60.684 63.158 0.00 0.00 0.00 3.91
6668 10426 1.985116 ACTCCCTCCCTCTCGTTGC 60.985 63.158 0.00 0.00 0.00 4.17
6669 10427 0.900647 ACACTCCCTCCCTCTCGTTG 60.901 60.000 0.00 0.00 0.00 4.10
6670 10428 0.900647 CACACTCCCTCCCTCTCGTT 60.901 60.000 0.00 0.00 0.00 3.85
6671 10429 1.304547 CACACTCCCTCCCTCTCGT 60.305 63.158 0.00 0.00 0.00 4.18
6672 10430 1.304547 ACACACTCCCTCCCTCTCG 60.305 63.158 0.00 0.00 0.00 4.04
6673 10431 0.973496 GGACACACTCCCTCCCTCTC 60.973 65.000 0.00 0.00 31.83 3.20
6674 10432 1.079438 GGACACACTCCCTCCCTCT 59.921 63.158 0.00 0.00 31.83 3.69
6675 10433 1.229209 TGGACACACTCCCTCCCTC 60.229 63.158 0.00 0.00 38.49 4.30
6676 10434 1.536662 GTGGACACACTCCCTCCCT 60.537 63.158 0.00 0.00 44.29 4.20
6677 10435 2.943978 CGTGGACACACTCCCTCCC 61.944 68.421 3.12 0.00 45.50 4.30
6678 10436 0.896940 TACGTGGACACACTCCCTCC 60.897 60.000 0.00 0.00 45.50 4.30
6679 10437 0.243095 GTACGTGGACACACTCCCTC 59.757 60.000 0.00 0.00 45.50 4.30
6680 10438 1.183676 GGTACGTGGACACACTCCCT 61.184 60.000 0.00 0.00 45.50 4.20
6681 10439 1.291272 GGTACGTGGACACACTCCC 59.709 63.158 0.00 0.00 45.50 4.30
6682 10440 1.183676 AGGGTACGTGGACACACTCC 61.184 60.000 0.00 1.52 45.50 3.85
6683 10441 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
6684 10442 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
6685 10443 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
6686 10444 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
6687 10445 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
6688 10446 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
6689 10447 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
6691 10449 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
6709 10467 5.548250 GTTAACATAACTCTTCCGCTTTCG 58.452 41.667 0.00 0.00 0.00 3.46
6710 10468 5.548250 CGTTAACATAACTCTTCCGCTTTC 58.452 41.667 6.39 0.00 0.00 2.62
6711 10469 4.142966 GCGTTAACATAACTCTTCCGCTTT 60.143 41.667 6.39 0.00 36.03 3.51
6712 10470 3.370061 GCGTTAACATAACTCTTCCGCTT 59.630 43.478 6.39 0.00 36.03 4.68
6713 10471 2.928116 GCGTTAACATAACTCTTCCGCT 59.072 45.455 6.39 0.00 36.03 5.52
6714 10472 2.284855 CGCGTTAACATAACTCTTCCGC 60.285 50.000 6.39 0.00 35.63 5.54
6715 10473 2.280708 CCGCGTTAACATAACTCTTCCG 59.719 50.000 4.92 0.00 0.00 4.30
6716 10474 3.256558 ACCGCGTTAACATAACTCTTCC 58.743 45.455 4.92 0.00 0.00 3.46
6717 10475 4.386652 TCAACCGCGTTAACATAACTCTTC 59.613 41.667 4.92 0.00 0.00 2.87
6718 10476 4.309099 TCAACCGCGTTAACATAACTCTT 58.691 39.130 4.92 0.00 0.00 2.85
6719 10477 3.916761 TCAACCGCGTTAACATAACTCT 58.083 40.909 4.92 0.00 0.00 3.24
6720 10478 4.092383 ACATCAACCGCGTTAACATAACTC 59.908 41.667 4.92 0.00 0.00 3.01
6721 10479 3.998341 ACATCAACCGCGTTAACATAACT 59.002 39.130 4.92 0.00 0.00 2.24
6722 10480 4.330740 ACATCAACCGCGTTAACATAAC 57.669 40.909 4.92 0.00 0.00 1.89
6723 10481 5.170021 ACTACATCAACCGCGTTAACATAA 58.830 37.500 4.92 0.00 0.00 1.90
6724 10482 4.746729 ACTACATCAACCGCGTTAACATA 58.253 39.130 4.92 0.00 0.00 2.29
6725 10483 3.592059 ACTACATCAACCGCGTTAACAT 58.408 40.909 4.92 0.00 0.00 2.71
6726 10484 2.988493 GACTACATCAACCGCGTTAACA 59.012 45.455 4.92 0.00 0.00 2.41
6727 10485 2.027214 CGACTACATCAACCGCGTTAAC 59.973 50.000 4.92 0.00 0.00 2.01
6728 10486 2.095314 TCGACTACATCAACCGCGTTAA 60.095 45.455 4.92 0.00 0.00 2.01
6729 10487 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
6730 10488 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
6731 10489 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
6732 10490 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
6733 10491 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
6734 10492 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
6735 10493 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
6736 10494 4.224433 TGAAGACGTTCGACTACATCAAC 58.776 43.478 0.00 0.00 35.17 3.18
6737 10495 4.492791 TGAAGACGTTCGACTACATCAA 57.507 40.909 0.00 0.00 35.17 2.57
6738 10496 4.155280 TCATGAAGACGTTCGACTACATCA 59.845 41.667 0.00 0.23 35.17 3.07
6739 10497 4.659088 TCATGAAGACGTTCGACTACATC 58.341 43.478 0.00 0.00 35.17 3.06
6740 10498 4.696899 TCATGAAGACGTTCGACTACAT 57.303 40.909 0.00 0.00 35.17 2.29
6741 10499 4.438336 GGATCATGAAGACGTTCGACTACA 60.438 45.833 0.00 0.00 35.17 2.74
6742 10500 4.036352 GGATCATGAAGACGTTCGACTAC 58.964 47.826 0.00 0.00 35.17 2.73
6743 10501 3.692593 TGGATCATGAAGACGTTCGACTA 59.307 43.478 0.00 0.00 35.17 2.59
6744 10502 2.492088 TGGATCATGAAGACGTTCGACT 59.508 45.455 0.00 0.00 35.17 4.18
6745 10503 2.876091 TGGATCATGAAGACGTTCGAC 58.124 47.619 0.00 0.00 35.17 4.20
6746 10504 3.250744 GTTGGATCATGAAGACGTTCGA 58.749 45.455 0.00 0.00 35.17 3.71
6747 10505 2.348666 GGTTGGATCATGAAGACGTTCG 59.651 50.000 0.00 0.00 35.17 3.95
6748 10506 3.334691 TGGTTGGATCATGAAGACGTTC 58.665 45.455 0.00 0.00 0.00 3.95
6749 10507 3.417069 TGGTTGGATCATGAAGACGTT 57.583 42.857 0.00 0.00 0.00 3.99
6750 10508 3.417069 TTGGTTGGATCATGAAGACGT 57.583 42.857 0.00 0.00 0.00 4.34



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.