Multiple sequence alignment - TraesCS7B01G128500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G128500 chr7B 100.000 3176 0 0 1 3176 153744659 153741484 0.000000e+00 5866.0
1 TraesCS7B01G128500 chr7B 89.004 1446 95 27 898 2288 153581853 153583289 0.000000e+00 1731.0
2 TraesCS7B01G128500 chr7B 83.251 812 71 21 28 794 153581050 153581841 0.000000e+00 686.0
3 TraesCS7B01G128500 chr7D 95.082 2440 98 11 9 2438 184524868 184522441 0.000000e+00 3821.0
4 TraesCS7B01G128500 chr7D 88.976 2286 166 41 28 2268 184499381 184501625 0.000000e+00 2747.0
5 TraesCS7B01G128500 chr7D 93.304 224 15 0 2953 3176 184522074 184521851 6.570000e-87 331.0
6 TraesCS7B01G128500 chr7D 90.826 109 4 4 2433 2540 184522417 184522314 1.190000e-29 141.0
7 TraesCS7B01G128500 chr7D 88.732 71 4 2 823 893 2078466 2078400 2.030000e-12 84.2
8 TraesCS7B01G128500 chr7A 88.870 2300 172 41 28 2273 186098213 186095944 0.000000e+00 2752.0
9 TraesCS7B01G128500 chr7A 92.266 1461 87 14 905 2347 185975455 185976907 0.000000e+00 2049.0
10 TraesCS7B01G128500 chr7A 92.932 764 38 9 9 769 185974645 185975395 0.000000e+00 1098.0
11 TraesCS7B01G128500 chr7A 74.500 1251 239 57 941 2160 170613962 170612761 1.330000e-128 470.0
12 TraesCS7B01G128500 chr1B 95.082 183 8 1 2539 2720 657411980 657412162 1.440000e-73 287.0
13 TraesCS7B01G128500 chr1B 93.514 185 10 2 2541 2724 420864020 420863837 1.120000e-69 274.0
14 TraesCS7B01G128500 chr1A 92.000 175 12 2 2543 2716 28906513 28906686 8.800000e-61 244.0
15 TraesCS7B01G128500 chr1A 87.912 182 21 1 2541 2721 151543110 151542929 2.480000e-51 213.0
16 TraesCS7B01G128500 chr2B 89.305 187 17 3 2537 2720 687625762 687625576 6.850000e-57 231.0
17 TraesCS7B01G128500 chr2B 88.732 71 4 2 823 893 800248990 800248924 2.030000e-12 84.2
18 TraesCS7B01G128500 chr2B 100.000 29 0 0 2925 2953 740319833 740319805 2.000000e-03 54.7
19 TraesCS7B01G128500 chr5A 88.398 181 20 1 2541 2720 709467899 709468079 1.920000e-52 217.0
20 TraesCS7B01G128500 chr3B 88.398 181 20 1 2541 2720 677993914 677993734 1.920000e-52 217.0
21 TraesCS7B01G128500 chr3B 88.333 180 20 1 2542 2720 25476895 25477074 6.900000e-52 215.0
22 TraesCS7B01G128500 chr3B 86.486 74 6 2 820 893 29709452 29709521 9.450000e-11 78.7
23 TraesCS7B01G128500 chr2A 88.398 181 20 1 2541 2720 356519274 356519094 1.920000e-52 217.0
24 TraesCS7B01G128500 chr3D 91.509 106 9 0 1944 2049 474664327 474664222 2.550000e-31 147.0
25 TraesCS7B01G128500 chr3A 90.141 71 3 2 823 893 574856728 574856794 4.360000e-14 89.8
26 TraesCS7B01G128500 chr3A 85.897 78 6 3 816 893 704105784 704105712 9.450000e-11 78.7
27 TraesCS7B01G128500 chr5B 87.500 72 5 2 823 894 692262558 692262491 2.630000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G128500 chr7B 153741484 153744659 3175 True 5866.0 5866 100.000000 1 3176 1 chr7B.!!$R1 3175
1 TraesCS7B01G128500 chr7B 153581050 153583289 2239 False 1208.5 1731 86.127500 28 2288 2 chr7B.!!$F1 2260
2 TraesCS7B01G128500 chr7D 184499381 184501625 2244 False 2747.0 2747 88.976000 28 2268 1 chr7D.!!$F1 2240
3 TraesCS7B01G128500 chr7D 184521851 184524868 3017 True 1431.0 3821 93.070667 9 3176 3 chr7D.!!$R2 3167
4 TraesCS7B01G128500 chr7A 186095944 186098213 2269 True 2752.0 2752 88.870000 28 2273 1 chr7A.!!$R2 2245
5 TraesCS7B01G128500 chr7A 185974645 185976907 2262 False 1573.5 2049 92.599000 9 2347 2 chr7A.!!$F1 2338
6 TraesCS7B01G128500 chr7A 170612761 170613962 1201 True 470.0 470 74.500000 941 2160 1 chr7A.!!$R1 1219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 528 0.38852 CAATGCTGACGTCCTCGACA 60.389 55.0 14.12 4.36 39.05 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2360 2522 0.038801 GCTGCTGCTCCCTCAAAAAC 60.039 55.0 8.53 0.0 36.03 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.113354 GGGAGTAATAACGAGACAAGCAG 58.887 47.826 0.00 0.00 0.00 4.24
42 43 3.544607 AGGATGCATCGGAGCGCT 61.545 61.111 20.15 11.27 37.31 5.92
143 149 2.511600 GACCGGCGATGAAGGGTG 60.512 66.667 9.30 0.00 31.66 4.61
190 201 2.844348 ACACCTTAACTATGTGGAGGGG 59.156 50.000 0.00 0.00 36.95 4.79
191 202 2.172717 CACCTTAACTATGTGGAGGGGG 59.827 54.545 0.00 0.00 0.00 5.40
317 337 2.229543 CGGACGTTAATCCCGATCCATA 59.770 50.000 6.79 0.00 45.58 2.74
369 389 2.409870 GCTTTGGGCTGATCGTGGG 61.410 63.158 0.00 0.00 38.06 4.61
405 425 2.206750 GAAACCACACGCACAAGACTA 58.793 47.619 0.00 0.00 0.00 2.59
406 426 1.865865 AACCACACGCACAAGACTAG 58.134 50.000 0.00 0.00 0.00 2.57
446 467 5.965922 TGCCCACTTACATATCTGATATCG 58.034 41.667 7.19 6.42 0.00 2.92
507 528 0.388520 CAATGCTGACGTCCTCGACA 60.389 55.000 14.12 4.36 39.05 4.35
840 910 7.415095 CGAAGTTCTTGAAATATATTGCCCACA 60.415 37.037 0.00 0.00 0.00 4.17
842 912 8.310122 AGTTCTTGAAATATATTGCCCACATT 57.690 30.769 0.00 0.00 0.00 2.71
873 943 4.379813 CCATCAGTTCGGACTTTTGAATGG 60.380 45.833 0.00 0.00 32.54 3.16
877 947 3.568430 AGTTCGGACTTTTGAATGGGTTC 59.432 43.478 0.00 0.00 29.87 3.62
895 965 3.367703 GGTTCACTGGAGCATGAATTTGG 60.368 47.826 0.00 0.00 37.19 3.28
1147 1239 1.243342 ACCGGAATACCACGTCGTCA 61.243 55.000 9.46 0.00 35.59 4.35
1584 1706 2.637383 GGACACGGTCGCCTTCTCT 61.637 63.158 0.00 0.00 32.65 3.10
1726 1854 3.565307 CTCTACTTCCTGAGGCTCATCT 58.435 50.000 19.11 1.47 0.00 2.90
1768 1896 4.070265 TCCCGATCCCCACCGAGT 62.070 66.667 0.00 0.00 0.00 4.18
1860 1988 2.668280 GCGCGAGGTGTTCAGGTTC 61.668 63.158 12.10 0.00 0.00 3.62
1862 1990 1.300697 GCGAGGTGTTCAGGTTCGT 60.301 57.895 0.00 0.00 34.05 3.85
1870 1998 0.716108 GTTCAGGTTCGTGATGAGCG 59.284 55.000 0.00 0.00 0.00 5.03
2160 2288 2.281276 GGCAAGGTCGGGTTCGTT 60.281 61.111 0.00 0.00 37.69 3.85
2200 2330 0.601558 CAAGCCAGTCAAAGCAGCAT 59.398 50.000 0.00 0.00 0.00 3.79
2279 2440 1.896465 GGCTCTCACAAGTCACTAGGT 59.104 52.381 0.00 0.00 0.00 3.08
2281 2442 3.119424 GGCTCTCACAAGTCACTAGGTAC 60.119 52.174 0.00 0.00 0.00 3.34
2354 2515 4.415735 GCAGCAGCTACATAAGTTTTTCC 58.584 43.478 0.00 0.00 37.91 3.13
2358 2520 7.147976 CAGCAGCTACATAAGTTTTTCCTTTT 58.852 34.615 0.00 0.00 0.00 2.27
2360 2522 7.653311 AGCAGCTACATAAGTTTTTCCTTTTTG 59.347 33.333 0.00 0.00 0.00 2.44
2372 2534 7.390440 AGTTTTTCCTTTTTGTTTTTGAGGGAG 59.610 33.333 0.00 0.00 0.00 4.30
2375 2537 4.122046 CCTTTTTGTTTTTGAGGGAGCAG 58.878 43.478 0.00 0.00 0.00 4.24
2422 2584 1.135575 CCTCGGCATCTTGCTTGTTTC 60.136 52.381 0.00 0.00 44.28 2.78
2439 2630 3.502979 TGTTTCCAGGTGCCGTATTAAAC 59.497 43.478 0.00 0.00 0.00 2.01
2470 2661 3.560896 GCAGGTCATTGCAAATTGTGTTT 59.439 39.130 1.71 0.00 43.53 2.83
2510 2701 8.625467 AGTAGTTTATTCCAAGATAAGAGGGT 57.375 34.615 0.00 0.00 0.00 4.34
2511 2702 9.059023 AGTAGTTTATTCCAAGATAAGAGGGTT 57.941 33.333 0.00 0.00 0.00 4.11
2518 2709 6.248569 TCCAAGATAAGAGGGTTACATTCC 57.751 41.667 0.00 0.00 0.00 3.01
2531 2722 2.777832 ACATTCCAGAGGCAAGAGAC 57.222 50.000 0.00 0.00 0.00 3.36
2533 2724 1.558756 CATTCCAGAGGCAAGAGACCT 59.441 52.381 0.00 0.00 41.41 3.85
2542 2733 4.686191 AGGCAAGAGACCTCAATATGAG 57.314 45.455 0.32 0.32 43.91 2.90
2543 2734 3.137533 GGCAAGAGACCTCAATATGAGC 58.862 50.000 1.79 0.00 42.98 4.26
2544 2735 3.432749 GGCAAGAGACCTCAATATGAGCA 60.433 47.826 1.79 0.00 42.98 4.26
2545 2736 4.194640 GCAAGAGACCTCAATATGAGCAA 58.805 43.478 1.79 0.00 42.98 3.91
2546 2737 4.820716 GCAAGAGACCTCAATATGAGCAAT 59.179 41.667 1.79 0.00 42.98 3.56
2547 2738 5.277876 GCAAGAGACCTCAATATGAGCAATG 60.278 44.000 1.79 0.00 42.98 2.82
2548 2739 4.387598 AGAGACCTCAATATGAGCAATGC 58.612 43.478 0.00 0.00 42.98 3.56
2549 2740 4.102838 AGAGACCTCAATATGAGCAATGCT 59.897 41.667 7.79 7.79 42.98 3.79
2550 2741 5.306419 AGAGACCTCAATATGAGCAATGCTA 59.694 40.000 8.12 0.00 42.98 3.49
2551 2742 5.303971 AGACCTCAATATGAGCAATGCTAC 58.696 41.667 8.12 2.57 42.98 3.58
2552 2743 5.039920 ACCTCAATATGAGCAATGCTACA 57.960 39.130 8.12 8.77 42.98 2.74
2553 2744 4.818546 ACCTCAATATGAGCAATGCTACAC 59.181 41.667 8.12 0.00 42.98 2.90
2554 2745 4.818005 CCTCAATATGAGCAATGCTACACA 59.182 41.667 8.12 2.05 42.98 3.72
2555 2746 5.472478 CCTCAATATGAGCAATGCTACACAT 59.528 40.000 8.12 10.40 42.98 3.21
2556 2747 6.652062 CCTCAATATGAGCAATGCTACACATA 59.348 38.462 8.12 12.36 42.98 2.29
2557 2748 7.360691 CCTCAATATGAGCAATGCTACACATAC 60.361 40.741 8.12 0.00 42.98 2.39
2558 2749 6.146021 TCAATATGAGCAATGCTACACATACG 59.854 38.462 8.12 7.39 39.88 3.06
2559 2750 3.245518 TGAGCAATGCTACACATACGT 57.754 42.857 8.12 0.00 39.88 3.57
2560 2751 4.379339 TGAGCAATGCTACACATACGTA 57.621 40.909 8.12 0.00 39.88 3.57
2561 2752 4.749976 TGAGCAATGCTACACATACGTAA 58.250 39.130 8.12 0.00 39.88 3.18
2562 2753 5.172205 TGAGCAATGCTACACATACGTAAA 58.828 37.500 8.12 0.00 39.88 2.01
2563 2754 5.062934 TGAGCAATGCTACACATACGTAAAC 59.937 40.000 8.12 0.00 39.88 2.01
2564 2755 5.175859 AGCAATGCTACACATACGTAAACT 58.824 37.500 5.69 0.00 38.34 2.66
2565 2756 5.642063 AGCAATGCTACACATACGTAAACTT 59.358 36.000 5.69 0.00 38.34 2.66
2566 2757 6.814644 AGCAATGCTACACATACGTAAACTTA 59.185 34.615 5.69 0.00 38.34 2.24
2567 2758 6.898189 GCAATGCTACACATACGTAAACTTAC 59.102 38.462 0.00 0.00 38.34 2.34
2583 2774 8.056710 GTAAACTTACGTTCAGGTTTTACGTA 57.943 34.615 4.20 0.00 45.59 3.57
2589 2780 6.790285 ACGTTCAGGTTTTACGTAAATGAT 57.210 33.333 20.72 7.46 45.59 2.45
2590 2781 6.595794 ACGTTCAGGTTTTACGTAAATGATG 58.404 36.000 20.72 17.54 45.59 3.07
2591 2782 6.424509 ACGTTCAGGTTTTACGTAAATGATGA 59.575 34.615 20.72 19.20 45.59 2.92
2592 2783 7.118680 ACGTTCAGGTTTTACGTAAATGATGAT 59.881 33.333 20.72 8.12 45.59 2.45
2593 2784 7.425309 CGTTCAGGTTTTACGTAAATGATGATG 59.575 37.037 20.72 13.40 0.00 3.07
2594 2785 7.915293 TCAGGTTTTACGTAAATGATGATGT 57.085 32.000 20.72 0.00 0.00 3.06
2595 2786 7.747888 TCAGGTTTTACGTAAATGATGATGTG 58.252 34.615 20.72 10.23 0.00 3.21
2596 2787 6.966632 CAGGTTTTACGTAAATGATGATGTGG 59.033 38.462 20.72 0.89 0.00 4.17
2597 2788 6.094881 AGGTTTTACGTAAATGATGATGTGGG 59.905 38.462 20.72 0.00 0.00 4.61
2598 2789 6.127842 GGTTTTACGTAAATGATGATGTGGGT 60.128 38.462 20.72 0.00 0.00 4.51
2599 2790 6.429791 TTTACGTAAATGATGATGTGGGTG 57.570 37.500 16.59 0.00 0.00 4.61
2600 2791 3.950397 ACGTAAATGATGATGTGGGTGT 58.050 40.909 0.00 0.00 0.00 4.16
2601 2792 4.331968 ACGTAAATGATGATGTGGGTGTT 58.668 39.130 0.00 0.00 0.00 3.32
2602 2793 4.155826 ACGTAAATGATGATGTGGGTGTTG 59.844 41.667 0.00 0.00 0.00 3.33
2603 2794 4.155826 CGTAAATGATGATGTGGGTGTTGT 59.844 41.667 0.00 0.00 0.00 3.32
2604 2795 5.335583 CGTAAATGATGATGTGGGTGTTGTT 60.336 40.000 0.00 0.00 0.00 2.83
2605 2796 6.128145 CGTAAATGATGATGTGGGTGTTGTTA 60.128 38.462 0.00 0.00 0.00 2.41
2606 2797 6.662865 AAATGATGATGTGGGTGTTGTTAA 57.337 33.333 0.00 0.00 0.00 2.01
2607 2798 6.855763 AATGATGATGTGGGTGTTGTTAAT 57.144 33.333 0.00 0.00 0.00 1.40
2608 2799 6.855763 ATGATGATGTGGGTGTTGTTAATT 57.144 33.333 0.00 0.00 0.00 1.40
2609 2800 6.023357 TGATGATGTGGGTGTTGTTAATTG 57.977 37.500 0.00 0.00 0.00 2.32
2610 2801 4.862902 TGATGTGGGTGTTGTTAATTGG 57.137 40.909 0.00 0.00 0.00 3.16
2611 2802 3.576118 TGATGTGGGTGTTGTTAATTGGG 59.424 43.478 0.00 0.00 0.00 4.12
2612 2803 1.689273 TGTGGGTGTTGTTAATTGGGC 59.311 47.619 0.00 0.00 0.00 5.36
2613 2804 1.001520 GTGGGTGTTGTTAATTGGGCC 59.998 52.381 0.00 0.00 0.00 5.80
2614 2805 1.343069 GGGTGTTGTTAATTGGGCCA 58.657 50.000 0.00 0.00 0.00 5.36
2615 2806 1.275010 GGGTGTTGTTAATTGGGCCAG 59.725 52.381 6.23 0.00 0.00 4.85
2616 2807 1.275010 GGTGTTGTTAATTGGGCCAGG 59.725 52.381 6.23 0.00 0.00 4.45
2617 2808 2.243810 GTGTTGTTAATTGGGCCAGGA 58.756 47.619 6.23 0.00 0.00 3.86
2618 2809 2.831526 GTGTTGTTAATTGGGCCAGGAT 59.168 45.455 6.23 0.00 0.00 3.24
2619 2810 3.260632 GTGTTGTTAATTGGGCCAGGATT 59.739 43.478 6.23 7.56 0.00 3.01
2620 2811 4.464597 GTGTTGTTAATTGGGCCAGGATTA 59.535 41.667 6.23 6.44 0.00 1.75
2621 2812 4.709397 TGTTGTTAATTGGGCCAGGATTAG 59.291 41.667 6.23 0.00 0.00 1.73
2622 2813 3.295973 TGTTAATTGGGCCAGGATTAGC 58.704 45.455 6.23 11.65 0.00 3.09
2623 2814 3.295973 GTTAATTGGGCCAGGATTAGCA 58.704 45.455 15.77 0.00 0.00 3.49
2624 2815 2.077687 AATTGGGCCAGGATTAGCAG 57.922 50.000 6.23 0.00 0.00 4.24
2625 2816 0.468771 ATTGGGCCAGGATTAGCAGC 60.469 55.000 6.23 0.00 0.00 5.25
2626 2817 1.574526 TTGGGCCAGGATTAGCAGCT 61.575 55.000 6.23 0.00 0.00 4.24
2627 2818 1.527844 GGGCCAGGATTAGCAGCTG 60.528 63.158 10.11 10.11 0.00 4.24
2628 2819 1.527844 GGCCAGGATTAGCAGCTGG 60.528 63.158 17.12 0.00 38.17 4.85
2629 2820 1.527844 GCCAGGATTAGCAGCTGGG 60.528 63.158 17.12 6.43 35.85 4.45
2630 2821 1.150081 CCAGGATTAGCAGCTGGGG 59.850 63.158 17.12 0.00 0.00 4.96
2631 2822 1.527844 CAGGATTAGCAGCTGGGGC 60.528 63.158 17.12 0.07 39.06 5.80
2632 2823 2.203408 GGATTAGCAGCTGGGGCC 60.203 66.667 17.12 0.00 39.73 5.80
2633 2824 2.203408 GATTAGCAGCTGGGGCCC 60.203 66.667 18.17 18.17 39.73 5.80
2634 2825 3.023116 ATTAGCAGCTGGGGCCCA 61.023 61.111 26.87 26.87 39.73 5.36
2635 2826 3.364907 ATTAGCAGCTGGGGCCCAC 62.365 63.158 24.76 18.78 39.73 4.61
2646 2837 2.522193 GGCCCACCCCGTTTGAAA 60.522 61.111 0.00 0.00 0.00 2.69
2647 2838 1.911269 GGCCCACCCCGTTTGAAAT 60.911 57.895 0.00 0.00 0.00 2.17
2648 2839 1.589630 GCCCACCCCGTTTGAAATC 59.410 57.895 0.00 0.00 0.00 2.17
2649 2840 1.182385 GCCCACCCCGTTTGAAATCA 61.182 55.000 0.00 0.00 0.00 2.57
2650 2841 0.887933 CCCACCCCGTTTGAAATCAG 59.112 55.000 0.00 0.00 0.00 2.90
2651 2842 0.887933 CCACCCCGTTTGAAATCAGG 59.112 55.000 0.00 0.00 0.00 3.86
2652 2843 0.887933 CACCCCGTTTGAAATCAGGG 59.112 55.000 7.95 7.95 41.68 4.45
2654 2845 2.578683 CCCGTTTGAAATCAGGGGG 58.421 57.895 7.81 5.24 38.44 5.40
2672 2863 3.796111 GGGGGAGGAGAGAATGATATGA 58.204 50.000 0.00 0.00 0.00 2.15
2673 2864 4.171234 GGGGGAGGAGAGAATGATATGAA 58.829 47.826 0.00 0.00 0.00 2.57
2674 2865 4.224818 GGGGGAGGAGAGAATGATATGAAG 59.775 50.000 0.00 0.00 0.00 3.02
2675 2866 4.224818 GGGGAGGAGAGAATGATATGAAGG 59.775 50.000 0.00 0.00 0.00 3.46
2676 2867 4.843516 GGGAGGAGAGAATGATATGAAGGT 59.156 45.833 0.00 0.00 0.00 3.50
2677 2868 5.309282 GGGAGGAGAGAATGATATGAAGGTT 59.691 44.000 0.00 0.00 0.00 3.50
2678 2869 6.498651 GGGAGGAGAGAATGATATGAAGGTTA 59.501 42.308 0.00 0.00 0.00 2.85
2679 2870 7.016661 GGGAGGAGAGAATGATATGAAGGTTAA 59.983 40.741 0.00 0.00 0.00 2.01
2680 2871 8.093927 GGAGGAGAGAATGATATGAAGGTTAAG 58.906 40.741 0.00 0.00 0.00 1.85
2681 2872 8.560124 AGGAGAGAATGATATGAAGGTTAAGT 57.440 34.615 0.00 0.00 0.00 2.24
2682 2873 9.661954 AGGAGAGAATGATATGAAGGTTAAGTA 57.338 33.333 0.00 0.00 0.00 2.24
2685 2876 9.771534 AGAGAATGATATGAAGGTTAAGTAAGC 57.228 33.333 0.00 0.00 0.00 3.09
2686 2877 8.910351 AGAATGATATGAAGGTTAAGTAAGCC 57.090 34.615 0.00 0.00 34.40 4.35
2687 2878 8.718656 AGAATGATATGAAGGTTAAGTAAGCCT 58.281 33.333 0.00 0.00 34.40 4.58
2688 2879 9.998106 GAATGATATGAAGGTTAAGTAAGCCTA 57.002 33.333 0.00 0.00 34.40 3.93
2689 2880 9.780186 AATGATATGAAGGTTAAGTAAGCCTAC 57.220 33.333 0.00 0.00 34.40 3.18
2690 2881 7.431249 TGATATGAAGGTTAAGTAAGCCTACG 58.569 38.462 0.00 0.00 34.40 3.51
2691 2882 5.672421 ATGAAGGTTAAGTAAGCCTACGT 57.328 39.130 0.00 0.00 34.40 3.57
2692 2883 6.780457 ATGAAGGTTAAGTAAGCCTACGTA 57.220 37.500 0.00 0.00 34.40 3.57
2693 2884 6.199937 TGAAGGTTAAGTAAGCCTACGTAG 57.800 41.667 15.92 15.92 34.40 3.51
2694 2885 5.126061 TGAAGGTTAAGTAAGCCTACGTAGG 59.874 44.000 33.18 33.18 46.42 3.18
2695 2886 4.860022 AGGTTAAGTAAGCCTACGTAGGA 58.140 43.478 39.65 20.28 46.63 2.94
2696 2887 4.642437 AGGTTAAGTAAGCCTACGTAGGAC 59.358 45.833 39.65 28.88 46.63 3.85
2697 2888 4.202060 GGTTAAGTAAGCCTACGTAGGACC 60.202 50.000 39.65 29.94 46.63 4.46
2698 2889 3.378861 AAGTAAGCCTACGTAGGACCT 57.621 47.619 39.65 26.57 46.63 3.85
2699 2890 3.378861 AGTAAGCCTACGTAGGACCTT 57.621 47.619 39.65 32.49 46.63 3.50
2700 2891 3.706183 AGTAAGCCTACGTAGGACCTTT 58.294 45.455 39.65 27.41 46.63 3.11
2701 2892 3.698539 AGTAAGCCTACGTAGGACCTTTC 59.301 47.826 39.65 28.69 46.63 2.62
2702 2893 1.101331 AGCCTACGTAGGACCTTTCG 58.899 55.000 39.65 15.14 46.63 3.46
2703 2894 0.813821 GCCTACGTAGGACCTTTCGT 59.186 55.000 39.65 21.77 46.63 3.85
2704 2895 2.017049 GCCTACGTAGGACCTTTCGTA 58.983 52.381 39.65 21.70 46.63 3.43
2719 2910 5.869350 CCTTTCGTAGGTCTAGCATTTTTG 58.131 41.667 0.00 0.00 39.39 2.44
2720 2911 4.939509 TTCGTAGGTCTAGCATTTTTGC 57.060 40.909 0.00 0.00 0.00 3.68
2721 2912 3.267483 TCGTAGGTCTAGCATTTTTGCC 58.733 45.455 0.00 0.00 34.90 4.52
2722 2913 3.006940 CGTAGGTCTAGCATTTTTGCCA 58.993 45.455 0.00 0.00 34.90 4.92
2741 2932 2.574399 GGTCCTCTGTCGAGCCAC 59.426 66.667 0.00 0.00 35.90 5.01
2742 2933 2.276116 GGTCCTCTGTCGAGCCACA 61.276 63.158 0.00 0.00 35.90 4.17
2743 2934 1.080434 GTCCTCTGTCGAGCCACAC 60.080 63.158 0.00 0.00 35.90 3.82
2744 2935 1.530655 TCCTCTGTCGAGCCACACA 60.531 57.895 0.00 0.00 35.90 3.72
2745 2936 0.900182 TCCTCTGTCGAGCCACACAT 60.900 55.000 0.00 0.00 35.90 3.21
2746 2937 0.459237 CCTCTGTCGAGCCACACATC 60.459 60.000 0.00 0.00 35.90 3.06
2747 2938 0.459237 CTCTGTCGAGCCACACATCC 60.459 60.000 0.00 0.00 0.00 3.51
2748 2939 1.807165 CTGTCGAGCCACACATCCG 60.807 63.158 0.00 0.00 0.00 4.18
2749 2940 2.261671 GTCGAGCCACACATCCGT 59.738 61.111 0.00 0.00 0.00 4.69
2751 2942 2.261361 CGAGCCACACATCCGTGA 59.739 61.111 0.00 0.00 46.80 4.35
2752 2943 2.094659 CGAGCCACACATCCGTGAC 61.095 63.158 0.00 0.00 46.80 3.67
2753 2944 1.005037 GAGCCACACATCCGTGACA 60.005 57.895 0.00 0.00 46.80 3.58
2754 2945 1.291877 GAGCCACACATCCGTGACAC 61.292 60.000 0.00 0.00 46.80 3.67
2755 2946 2.667318 GCCACACATCCGTGACACG 61.667 63.158 21.02 21.02 46.80 4.49
2756 2947 1.300620 CCACACATCCGTGACACGT 60.301 57.895 25.18 6.25 46.80 4.49
2757 2948 0.878523 CCACACATCCGTGACACGTT 60.879 55.000 25.18 10.70 46.80 3.99
2758 2949 0.232046 CACACATCCGTGACACGTTG 59.768 55.000 25.18 22.43 46.80 4.10
2759 2950 0.103390 ACACATCCGTGACACGTTGA 59.897 50.000 25.18 16.85 46.80 3.18
2760 2951 1.213491 CACATCCGTGACACGTTGAA 58.787 50.000 25.18 9.29 46.80 2.69
2761 2952 1.595328 CACATCCGTGACACGTTGAAA 59.405 47.619 25.18 6.93 46.80 2.69
2762 2953 1.864711 ACATCCGTGACACGTTGAAAG 59.135 47.619 25.18 15.00 40.58 2.62
2763 2954 0.865769 ATCCGTGACACGTTGAAAGC 59.134 50.000 25.18 0.00 40.58 3.51
2764 2955 1.083657 CCGTGACACGTTGAAAGCG 60.084 57.895 25.18 4.83 40.58 4.68
2765 2956 1.484227 CCGTGACACGTTGAAAGCGA 61.484 55.000 25.18 0.00 40.58 4.93
2766 2957 0.506932 CGTGACACGTTGAAAGCGAT 59.493 50.000 19.77 0.00 36.74 4.58
2767 2958 1.070843 CGTGACACGTTGAAAGCGATT 60.071 47.619 19.77 0.00 36.74 3.34
2768 2959 2.154198 CGTGACACGTTGAAAGCGATTA 59.846 45.455 19.77 0.00 36.74 1.75
2769 2960 3.181534 CGTGACACGTTGAAAGCGATTAT 60.182 43.478 19.77 0.00 36.74 1.28
2770 2961 4.030865 CGTGACACGTTGAAAGCGATTATA 59.969 41.667 19.77 0.00 36.74 0.98
2771 2962 5.245850 GTGACACGTTGAAAGCGATTATAC 58.754 41.667 0.00 0.00 0.00 1.47
2772 2963 4.327898 TGACACGTTGAAAGCGATTATACC 59.672 41.667 0.00 0.00 0.00 2.73
2773 2964 4.501071 ACACGTTGAAAGCGATTATACCT 58.499 39.130 0.00 0.00 0.00 3.08
2774 2965 4.933400 ACACGTTGAAAGCGATTATACCTT 59.067 37.500 0.00 0.00 0.00 3.50
2775 2966 5.163893 ACACGTTGAAAGCGATTATACCTTG 60.164 40.000 0.00 0.00 0.00 3.61
2776 2967 4.201783 ACGTTGAAAGCGATTATACCTTGC 60.202 41.667 0.00 0.00 0.00 4.01
2777 2968 4.271687 GTTGAAAGCGATTATACCTTGCG 58.728 43.478 0.00 0.00 0.00 4.85
2781 2972 2.969443 GCGATTATACCTTGCGCAAT 57.031 45.000 25.26 12.77 46.19 3.56
2782 2973 2.839474 GCGATTATACCTTGCGCAATC 58.161 47.619 25.26 15.10 46.19 2.67
2783 2974 2.480419 GCGATTATACCTTGCGCAATCT 59.520 45.455 25.26 13.87 46.19 2.40
2784 2975 3.665323 GCGATTATACCTTGCGCAATCTG 60.665 47.826 25.26 17.15 46.19 2.90
2785 2976 3.665323 CGATTATACCTTGCGCAATCTGC 60.665 47.826 25.26 7.05 40.69 4.26
2786 2977 2.323968 TATACCTTGCGCAATCTGCA 57.676 45.000 25.26 6.56 45.36 4.41
2788 2979 0.521291 TACCTTGCGCAATCTGCAAC 59.479 50.000 25.26 0.00 46.62 4.17
2789 2980 1.174712 ACCTTGCGCAATCTGCAACT 61.175 50.000 25.26 0.00 46.62 3.16
2790 2981 0.455633 CCTTGCGCAATCTGCAACTC 60.456 55.000 25.26 0.00 46.62 3.01
2791 2982 0.520404 CTTGCGCAATCTGCAACTCT 59.480 50.000 25.26 0.00 46.62 3.24
2792 2983 1.733912 CTTGCGCAATCTGCAACTCTA 59.266 47.619 25.26 0.00 46.62 2.43
2793 2984 2.028420 TGCGCAATCTGCAACTCTAT 57.972 45.000 8.16 0.00 45.36 1.98
2794 2985 2.358957 TGCGCAATCTGCAACTCTATT 58.641 42.857 8.16 0.00 45.36 1.73
2795 2986 2.096335 TGCGCAATCTGCAACTCTATTG 59.904 45.455 8.16 0.00 45.36 1.90
2796 2987 2.096496 GCGCAATCTGCAACTCTATTGT 59.904 45.455 0.30 0.00 45.36 2.71
2797 2988 3.677601 CGCAATCTGCAACTCTATTGTG 58.322 45.455 0.00 0.00 45.36 3.33
2798 2989 3.371898 CGCAATCTGCAACTCTATTGTGA 59.628 43.478 10.82 0.00 45.36 3.58
2799 2990 4.493708 CGCAATCTGCAACTCTATTGTGAG 60.494 45.833 10.82 0.00 45.36 3.51
2800 2991 4.633126 GCAATCTGCAACTCTATTGTGAGA 59.367 41.667 0.00 0.00 44.26 3.27
2801 2992 5.447010 GCAATCTGCAACTCTATTGTGAGAC 60.447 44.000 0.00 0.00 44.26 3.36
2802 2993 4.193826 TCTGCAACTCTATTGTGAGACC 57.806 45.455 0.00 0.00 37.50 3.85
2803 2994 3.834813 TCTGCAACTCTATTGTGAGACCT 59.165 43.478 0.00 0.00 37.50 3.85
2804 2995 5.016831 TCTGCAACTCTATTGTGAGACCTA 58.983 41.667 0.00 0.00 37.50 3.08
2805 2996 5.658634 TCTGCAACTCTATTGTGAGACCTAT 59.341 40.000 0.00 0.00 37.50 2.57
2806 2997 5.664457 TGCAACTCTATTGTGAGACCTATG 58.336 41.667 0.00 0.00 37.50 2.23
2807 2998 5.422012 TGCAACTCTATTGTGAGACCTATGA 59.578 40.000 0.00 0.00 37.50 2.15
2808 2999 6.070824 TGCAACTCTATTGTGAGACCTATGAA 60.071 38.462 0.00 0.00 37.50 2.57
2809 3000 6.478344 GCAACTCTATTGTGAGACCTATGAAG 59.522 42.308 0.00 0.00 37.50 3.02
2810 3001 7.551585 CAACTCTATTGTGAGACCTATGAAGT 58.448 38.462 0.00 0.00 37.50 3.01
2811 3002 7.726033 ACTCTATTGTGAGACCTATGAAGTT 57.274 36.000 0.00 0.00 37.50 2.66
2812 3003 8.140112 ACTCTATTGTGAGACCTATGAAGTTT 57.860 34.615 0.00 0.00 37.50 2.66
2813 3004 8.254508 ACTCTATTGTGAGACCTATGAAGTTTC 58.745 37.037 0.00 0.00 37.50 2.78
2814 3005 8.367660 TCTATTGTGAGACCTATGAAGTTTCT 57.632 34.615 0.00 0.00 0.00 2.52
2815 3006 8.253810 TCTATTGTGAGACCTATGAAGTTTCTG 58.746 37.037 0.00 0.00 0.00 3.02
2816 3007 5.152623 TGTGAGACCTATGAAGTTTCTGG 57.847 43.478 0.00 0.00 0.00 3.86
2817 3008 4.838423 TGTGAGACCTATGAAGTTTCTGGA 59.162 41.667 0.00 0.00 0.00 3.86
2818 3009 5.047021 TGTGAGACCTATGAAGTTTCTGGAG 60.047 44.000 0.00 0.00 0.00 3.86
2819 3010 5.186021 GTGAGACCTATGAAGTTTCTGGAGA 59.814 44.000 0.00 0.00 0.00 3.71
2820 3011 5.780282 TGAGACCTATGAAGTTTCTGGAGAA 59.220 40.000 0.00 0.00 0.00 2.87
2821 3012 6.441924 TGAGACCTATGAAGTTTCTGGAGAAT 59.558 38.462 0.00 0.00 33.54 2.40
2822 3013 7.619698 TGAGACCTATGAAGTTTCTGGAGAATA 59.380 37.037 0.00 0.00 33.54 1.75
2823 3014 8.380742 AGACCTATGAAGTTTCTGGAGAATAA 57.619 34.615 0.00 0.00 33.54 1.40
2824 3015 8.826765 AGACCTATGAAGTTTCTGGAGAATAAA 58.173 33.333 0.00 0.00 33.54 1.40
2825 3016 8.794335 ACCTATGAAGTTTCTGGAGAATAAAC 57.206 34.615 0.00 0.00 33.54 2.01
2826 3017 8.606830 ACCTATGAAGTTTCTGGAGAATAAACT 58.393 33.333 0.00 0.00 43.43 2.66
2827 3018 9.103861 CCTATGAAGTTTCTGGAGAATAAACTC 57.896 37.037 0.00 0.00 41.36 3.01
2828 3019 9.883142 CTATGAAGTTTCTGGAGAATAAACTCT 57.117 33.333 0.00 0.00 41.36 3.24
2830 3021 8.980481 TGAAGTTTCTGGAGAATAAACTCTTT 57.020 30.769 0.00 0.00 41.36 2.52
2868 3059 9.846248 ATGACTTAATTTCAGCAACTAAATGAC 57.154 29.630 0.00 0.00 0.00 3.06
2869 3060 8.296713 TGACTTAATTTCAGCAACTAAATGACC 58.703 33.333 0.00 0.00 0.00 4.02
2870 3061 8.177119 ACTTAATTTCAGCAACTAAATGACCA 57.823 30.769 0.00 0.00 0.00 4.02
2871 3062 8.806146 ACTTAATTTCAGCAACTAAATGACCAT 58.194 29.630 0.00 0.00 0.00 3.55
2874 3065 7.701539 ATTTCAGCAACTAAATGACCATACA 57.298 32.000 0.00 0.00 0.00 2.29
2875 3066 6.494893 TTCAGCAACTAAATGACCATACAC 57.505 37.500 0.00 0.00 0.00 2.90
2876 3067 5.804639 TCAGCAACTAAATGACCATACACT 58.195 37.500 0.00 0.00 0.00 3.55
2877 3068 5.643348 TCAGCAACTAAATGACCATACACTG 59.357 40.000 0.00 0.00 0.00 3.66
2878 3069 5.643348 CAGCAACTAAATGACCATACACTGA 59.357 40.000 0.00 0.00 0.00 3.41
2879 3070 6.317140 CAGCAACTAAATGACCATACACTGAT 59.683 38.462 0.00 0.00 0.00 2.90
2880 3071 6.317140 AGCAACTAAATGACCATACACTGATG 59.683 38.462 0.00 0.00 0.00 3.07
2893 3084 4.065321 ACACTGATGGATAAGTAGCAGC 57.935 45.455 0.00 0.00 0.00 5.25
2894 3085 3.181461 ACACTGATGGATAAGTAGCAGCC 60.181 47.826 0.00 0.00 0.00 4.85
2895 3086 3.041211 ACTGATGGATAAGTAGCAGCCA 58.959 45.455 0.00 0.00 0.00 4.75
2896 3087 3.181461 ACTGATGGATAAGTAGCAGCCAC 60.181 47.826 0.00 0.00 0.00 5.01
2897 3088 2.771372 TGATGGATAAGTAGCAGCCACA 59.229 45.455 0.00 0.00 0.00 4.17
2898 3089 3.392285 TGATGGATAAGTAGCAGCCACAT 59.608 43.478 0.00 0.00 0.00 3.21
2899 3090 4.592778 TGATGGATAAGTAGCAGCCACATA 59.407 41.667 0.00 0.00 0.00 2.29
2900 3091 5.071653 TGATGGATAAGTAGCAGCCACATAA 59.928 40.000 0.00 0.00 0.00 1.90
2901 3092 4.960938 TGGATAAGTAGCAGCCACATAAG 58.039 43.478 0.00 0.00 0.00 1.73
2902 3093 4.408921 TGGATAAGTAGCAGCCACATAAGT 59.591 41.667 0.00 0.00 0.00 2.24
2903 3094 5.104527 TGGATAAGTAGCAGCCACATAAGTT 60.105 40.000 0.00 0.00 0.00 2.66
2904 3095 6.099125 TGGATAAGTAGCAGCCACATAAGTTA 59.901 38.462 0.00 0.00 0.00 2.24
2905 3096 6.424207 GGATAAGTAGCAGCCACATAAGTTAC 59.576 42.308 0.00 0.00 0.00 2.50
2906 3097 5.422214 AAGTAGCAGCCACATAAGTTACT 57.578 39.130 0.00 0.00 30.79 2.24
2907 3098 4.759782 AGTAGCAGCCACATAAGTTACTG 58.240 43.478 0.00 0.00 33.36 2.74
2908 3099 3.703001 AGCAGCCACATAAGTTACTGT 57.297 42.857 0.00 0.00 32.98 3.55
2909 3100 4.021102 AGCAGCCACATAAGTTACTGTT 57.979 40.909 0.00 0.00 32.98 3.16
2910 3101 5.160607 AGCAGCCACATAAGTTACTGTTA 57.839 39.130 0.00 0.00 32.98 2.41
2911 3102 4.935808 AGCAGCCACATAAGTTACTGTTAC 59.064 41.667 0.00 0.00 32.98 2.50
2912 3103 4.693566 GCAGCCACATAAGTTACTGTTACA 59.306 41.667 0.00 0.00 32.98 2.41
2913 3104 5.163854 GCAGCCACATAAGTTACTGTTACAG 60.164 44.000 11.21 11.21 37.52 2.74
2922 3113 9.730420 CATAAGTTACTGTTACAGTTTTGCTTT 57.270 29.630 23.52 11.55 42.59 3.51
2940 3131 9.844790 TTTTGCTTTATTATGTCTCAGTCAATG 57.155 29.630 0.00 0.00 0.00 2.82
2959 3330 9.125026 AGTCAATGCTATATTCCTTTTGTTAGG 57.875 33.333 0.00 0.00 36.59 2.69
2997 3368 1.526986 GCGTTCGTGATCCATGAAACG 60.527 52.381 0.00 9.91 40.42 3.60
2998 3369 1.724623 CGTTCGTGATCCATGAAACGT 59.275 47.619 0.00 0.00 40.42 3.99
3017 3388 2.087009 CGGTCGTCGTCTTTGAGCC 61.087 63.158 0.00 0.00 0.00 4.70
3075 3446 3.123674 GTGTAGAGAAGGCACCACG 57.876 57.895 0.00 0.00 0.00 4.94
3098 3469 0.528924 TGCGCAGTAGTTATCGGTGT 59.471 50.000 5.66 0.00 0.00 4.16
3155 3526 0.036010 CCTCTTGCGTCATCTTGGGT 60.036 55.000 0.00 0.00 0.00 4.51
3160 3531 4.185413 CGTCATCTTGGGTGGACG 57.815 61.111 0.00 0.00 45.62 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.578005 TTGTCTCGTTATTACTCCCTCTG 57.422 43.478 0.00 0.00 0.00 3.35
1 2 4.098196 GCTTGTCTCGTTATTACTCCCTCT 59.902 45.833 0.00 0.00 0.00 3.69
2 3 4.142227 TGCTTGTCTCGTTATTACTCCCTC 60.142 45.833 0.00 0.00 0.00 4.30
3 4 3.767673 TGCTTGTCTCGTTATTACTCCCT 59.232 43.478 0.00 0.00 0.00 4.20
4 5 4.113354 CTGCTTGTCTCGTTATTACTCCC 58.887 47.826 0.00 0.00 0.00 4.30
5 6 4.113354 CCTGCTTGTCTCGTTATTACTCC 58.887 47.826 0.00 0.00 0.00 3.85
6 7 4.995124 TCCTGCTTGTCTCGTTATTACTC 58.005 43.478 0.00 0.00 0.00 2.59
7 8 5.352284 CATCCTGCTTGTCTCGTTATTACT 58.648 41.667 0.00 0.00 0.00 2.24
26 27 3.344215 CAGCGCTCCGATGCATCC 61.344 66.667 20.87 5.88 36.27 3.51
42 43 3.940852 CTCCATCACCATTTTGATCGTCA 59.059 43.478 0.00 0.00 33.74 4.35
133 138 3.633986 CCTAATTGGCTTCACCCTTCATC 59.366 47.826 0.00 0.00 37.83 2.92
141 146 3.181483 CCTTGCATCCTAATTGGCTTCAC 60.181 47.826 0.00 0.00 35.26 3.18
143 149 3.026694 ACCTTGCATCCTAATTGGCTTC 58.973 45.455 0.00 0.00 35.26 3.86
210 222 2.857592 TCGGTACCTTCATCGCTAAC 57.142 50.000 10.90 0.00 0.00 2.34
211 223 4.392047 TCTATCGGTACCTTCATCGCTAA 58.608 43.478 10.90 0.00 0.00 3.09
369 389 5.417580 TGTGGTTTCCCTTGTTTATATGCTC 59.582 40.000 0.00 0.00 0.00 4.26
405 425 5.128663 GTGGGCATACAAAATGGTTATTCCT 59.871 40.000 0.00 0.00 37.07 3.36
406 426 5.128663 AGTGGGCATACAAAATGGTTATTCC 59.871 40.000 0.00 0.00 0.00 3.01
446 467 4.268884 GGTTCTTCTATGACGACTGATTGC 59.731 45.833 0.00 0.00 0.00 3.56
507 528 2.647529 TGAACGAGCACATGACGTAT 57.352 45.000 0.00 0.00 39.31 3.06
522 543 5.059833 GCCTGCCTATATATAGCCATGAAC 58.940 45.833 13.49 0.00 0.00 3.18
557 580 2.117206 GGGTGGTGGTTGCATGGA 59.883 61.111 0.00 0.00 0.00 3.41
821 887 6.738114 ACGAATGTGGGCAATATATTTCAAG 58.262 36.000 0.00 0.00 0.00 3.02
840 910 1.137086 CGAACTGATGGAGGGACGAAT 59.863 52.381 0.00 0.00 0.00 3.34
842 912 1.320344 CCGAACTGATGGAGGGACGA 61.320 60.000 0.00 0.00 0.00 4.20
873 943 3.367703 CCAAATTCATGCTCCAGTGAACC 60.368 47.826 0.00 0.00 37.19 3.62
877 947 4.012374 ACTACCAAATTCATGCTCCAGTG 58.988 43.478 0.00 0.00 0.00 3.66
895 965 8.033626 ACAAGGTGTAGATAAGTTAGCAACTAC 58.966 37.037 0.28 6.64 41.91 2.73
1147 1239 4.473520 CGGAGTGCCCAAGCCGAT 62.474 66.667 0.00 0.00 46.29 4.18
1605 1727 1.613630 GAGGAAGCCCTGGGACTCA 60.614 63.158 19.27 0.00 44.53 3.41
1726 1854 4.201679 CCCGCCGATACTCACGCA 62.202 66.667 0.00 0.00 0.00 5.24
1860 1988 0.999406 CCTTGTAACCGCTCATCACG 59.001 55.000 0.00 0.00 0.00 4.35
1862 1990 1.338674 CCACCTTGTAACCGCTCATCA 60.339 52.381 0.00 0.00 0.00 3.07
2160 2288 1.737735 CGATCAGCAGCGGTTGTCA 60.738 57.895 0.09 0.00 0.00 3.58
2279 2440 3.011369 ACTCCACTCCACACCATCTAGTA 59.989 47.826 0.00 0.00 0.00 1.82
2281 2442 2.461695 ACTCCACTCCACACCATCTAG 58.538 52.381 0.00 0.00 0.00 2.43
2309 2470 1.279496 TCCATCAGCAAGCTAGGTGT 58.721 50.000 0.00 0.00 38.15 4.16
2310 2471 2.634815 ATCCATCAGCAAGCTAGGTG 57.365 50.000 0.00 0.00 38.31 4.00
2311 2472 3.495806 GCTTATCCATCAGCAAGCTAGGT 60.496 47.826 0.00 0.00 40.16 3.08
2354 2515 3.557185 GCTGCTCCCTCAAAAACAAAAAG 59.443 43.478 0.00 0.00 0.00 2.27
2358 2520 1.682854 CTGCTGCTCCCTCAAAAACAA 59.317 47.619 0.00 0.00 0.00 2.83
2360 2522 0.038801 GCTGCTGCTCCCTCAAAAAC 60.039 55.000 8.53 0.00 36.03 2.43
2372 2534 4.184629 ACACTAACTTATGTAGCTGCTGC 58.815 43.478 13.43 12.15 40.05 5.25
2375 2537 8.969267 CAGTATAACACTAACTTATGTAGCTGC 58.031 37.037 0.00 0.00 34.98 5.25
2422 2584 7.556733 TTATTTAGTTTAATACGGCACCTGG 57.443 36.000 0.00 0.00 0.00 4.45
2439 2630 8.385111 CAATTTGCAATGACCTGCTTTATTTAG 58.615 33.333 0.00 0.00 43.07 1.85
2505 2696 1.559682 TGCCTCTGGAATGTAACCCTC 59.440 52.381 0.00 0.00 0.00 4.30
2509 2700 3.935828 GTCTCTTGCCTCTGGAATGTAAC 59.064 47.826 0.00 0.00 0.00 2.50
2510 2701 3.055094 GGTCTCTTGCCTCTGGAATGTAA 60.055 47.826 0.00 0.00 0.00 2.41
2511 2702 2.501723 GGTCTCTTGCCTCTGGAATGTA 59.498 50.000 0.00 0.00 0.00 2.29
2531 2722 4.818005 TGTGTAGCATTGCTCATATTGAGG 59.182 41.667 15.81 0.00 44.43 3.86
2533 2724 6.146021 CGTATGTGTAGCATTGCTCATATTGA 59.854 38.462 15.81 0.00 40.44 2.57
2534 2725 6.073602 ACGTATGTGTAGCATTGCTCATATTG 60.074 38.462 15.81 14.24 40.44 1.90
2535 2726 5.991606 ACGTATGTGTAGCATTGCTCATATT 59.008 36.000 15.81 5.92 40.44 1.28
2537 2728 4.944048 ACGTATGTGTAGCATTGCTCATA 58.056 39.130 15.81 13.56 40.44 2.15
2538 2729 3.797039 ACGTATGTGTAGCATTGCTCAT 58.203 40.909 15.81 14.56 40.44 2.90
2539 2730 3.245518 ACGTATGTGTAGCATTGCTCA 57.754 42.857 15.81 7.74 40.44 4.26
2540 2731 5.291128 AGTTTACGTATGTGTAGCATTGCTC 59.709 40.000 15.81 7.72 40.44 4.26
2542 2733 5.464965 AGTTTACGTATGTGTAGCATTGC 57.535 39.130 0.00 0.00 38.94 3.56
2567 2758 6.823531 TCATCATTTACGTAAAACCTGAACG 58.176 36.000 23.49 16.62 42.17 3.95
2568 2759 8.234546 ACATCATCATTTACGTAAAACCTGAAC 58.765 33.333 23.49 0.00 0.00 3.18
2569 2760 8.233868 CACATCATCATTTACGTAAAACCTGAA 58.766 33.333 23.49 10.07 0.00 3.02
2570 2761 7.148323 CCACATCATCATTTACGTAAAACCTGA 60.148 37.037 23.49 21.28 0.00 3.86
2571 2762 6.966632 CCACATCATCATTTACGTAAAACCTG 59.033 38.462 23.49 17.16 0.00 4.00
2572 2763 6.094881 CCCACATCATCATTTACGTAAAACCT 59.905 38.462 23.49 5.85 0.00 3.50
2573 2764 6.127842 ACCCACATCATCATTTACGTAAAACC 60.128 38.462 23.49 0.00 0.00 3.27
2574 2765 6.745450 CACCCACATCATCATTTACGTAAAAC 59.255 38.462 23.49 0.00 0.00 2.43
2575 2766 6.431543 ACACCCACATCATCATTTACGTAAAA 59.568 34.615 23.49 9.69 0.00 1.52
2576 2767 5.941058 ACACCCACATCATCATTTACGTAAA 59.059 36.000 22.12 22.12 0.00 2.01
2577 2768 5.492895 ACACCCACATCATCATTTACGTAA 58.507 37.500 3.29 3.29 0.00 3.18
2578 2769 5.092554 ACACCCACATCATCATTTACGTA 57.907 39.130 0.00 0.00 0.00 3.57
2579 2770 3.950397 ACACCCACATCATCATTTACGT 58.050 40.909 0.00 0.00 0.00 3.57
2580 2771 4.155826 ACAACACCCACATCATCATTTACG 59.844 41.667 0.00 0.00 0.00 3.18
2581 2772 5.643379 ACAACACCCACATCATCATTTAC 57.357 39.130 0.00 0.00 0.00 2.01
2582 2773 7.767250 TTAACAACACCCACATCATCATTTA 57.233 32.000 0.00 0.00 0.00 1.40
2583 2774 6.662865 TTAACAACACCCACATCATCATTT 57.337 33.333 0.00 0.00 0.00 2.32
2584 2775 6.855763 ATTAACAACACCCACATCATCATT 57.144 33.333 0.00 0.00 0.00 2.57
2585 2776 6.351202 CCAATTAACAACACCCACATCATCAT 60.351 38.462 0.00 0.00 0.00 2.45
2586 2777 5.047448 CCAATTAACAACACCCACATCATCA 60.047 40.000 0.00 0.00 0.00 3.07
2587 2778 5.410067 CCAATTAACAACACCCACATCATC 58.590 41.667 0.00 0.00 0.00 2.92
2588 2779 4.222588 CCCAATTAACAACACCCACATCAT 59.777 41.667 0.00 0.00 0.00 2.45
2589 2780 3.576118 CCCAATTAACAACACCCACATCA 59.424 43.478 0.00 0.00 0.00 3.07
2590 2781 3.616317 GCCCAATTAACAACACCCACATC 60.616 47.826 0.00 0.00 0.00 3.06
2591 2782 2.301583 GCCCAATTAACAACACCCACAT 59.698 45.455 0.00 0.00 0.00 3.21
2592 2783 1.689273 GCCCAATTAACAACACCCACA 59.311 47.619 0.00 0.00 0.00 4.17
2593 2784 1.001520 GGCCCAATTAACAACACCCAC 59.998 52.381 0.00 0.00 0.00 4.61
2594 2785 1.343069 GGCCCAATTAACAACACCCA 58.657 50.000 0.00 0.00 0.00 4.51
2595 2786 1.275010 CTGGCCCAATTAACAACACCC 59.725 52.381 0.00 0.00 0.00 4.61
2596 2787 1.275010 CCTGGCCCAATTAACAACACC 59.725 52.381 0.00 0.00 0.00 4.16
2597 2788 2.243810 TCCTGGCCCAATTAACAACAC 58.756 47.619 0.00 0.00 0.00 3.32
2598 2789 2.685106 TCCTGGCCCAATTAACAACA 57.315 45.000 0.00 0.00 0.00 3.33
2599 2790 4.441495 GCTAATCCTGGCCCAATTAACAAC 60.441 45.833 0.00 0.00 0.00 3.32
2600 2791 3.704061 GCTAATCCTGGCCCAATTAACAA 59.296 43.478 0.00 0.00 0.00 2.83
2601 2792 3.295973 GCTAATCCTGGCCCAATTAACA 58.704 45.455 0.00 0.00 0.00 2.41
2602 2793 3.295973 TGCTAATCCTGGCCCAATTAAC 58.704 45.455 0.00 0.00 0.00 2.01
2603 2794 3.565307 CTGCTAATCCTGGCCCAATTAA 58.435 45.455 0.00 0.00 0.00 1.40
2604 2795 2.752829 GCTGCTAATCCTGGCCCAATTA 60.753 50.000 0.00 0.71 0.00 1.40
2605 2796 2.031097 GCTGCTAATCCTGGCCCAATT 61.031 52.381 0.00 0.00 0.00 2.32
2606 2797 0.468771 GCTGCTAATCCTGGCCCAAT 60.469 55.000 0.00 0.00 0.00 3.16
2607 2798 1.076777 GCTGCTAATCCTGGCCCAA 60.077 57.895 0.00 0.00 0.00 4.12
2608 2799 2.002977 AGCTGCTAATCCTGGCCCA 61.003 57.895 0.00 0.00 0.00 5.36
2609 2800 1.527844 CAGCTGCTAATCCTGGCCC 60.528 63.158 0.00 0.00 0.00 5.80
2610 2801 1.527844 CCAGCTGCTAATCCTGGCC 60.528 63.158 8.66 0.00 39.64 5.36
2611 2802 1.527844 CCCAGCTGCTAATCCTGGC 60.528 63.158 8.66 0.00 43.74 4.85
2612 2803 1.150081 CCCCAGCTGCTAATCCTGG 59.850 63.158 8.66 0.81 44.49 4.45
2613 2804 1.527844 GCCCCAGCTGCTAATCCTG 60.528 63.158 8.66 0.00 35.50 3.86
2614 2805 2.761465 GGCCCCAGCTGCTAATCCT 61.761 63.158 8.66 0.00 39.73 3.24
2615 2806 2.203408 GGCCCCAGCTGCTAATCC 60.203 66.667 8.66 0.49 39.73 3.01
2616 2807 2.203408 GGGCCCCAGCTGCTAATC 60.203 66.667 12.23 0.00 39.73 1.75
2617 2808 3.023116 TGGGCCCCAGCTGCTAAT 61.023 61.111 22.27 0.00 39.73 1.73
2618 2809 4.047125 GTGGGCCCCAGCTGCTAA 62.047 66.667 22.27 0.00 39.73 3.09
2629 2820 1.884075 GATTTCAAACGGGGTGGGCC 61.884 60.000 0.00 0.00 0.00 5.80
2630 2821 1.182385 TGATTTCAAACGGGGTGGGC 61.182 55.000 0.00 0.00 0.00 5.36
2631 2822 0.887933 CTGATTTCAAACGGGGTGGG 59.112 55.000 0.00 0.00 0.00 4.61
2632 2823 0.887933 CCTGATTTCAAACGGGGTGG 59.112 55.000 0.00 0.00 0.00 4.61
2633 2824 0.887933 CCCTGATTTCAAACGGGGTG 59.112 55.000 5.68 0.00 44.99 4.61
2634 2825 3.356814 CCCTGATTTCAAACGGGGT 57.643 52.632 5.68 0.00 44.99 4.95
2636 2827 2.578683 CCCCCTGATTTCAAACGGG 58.421 57.895 0.00 0.00 34.62 5.28
2651 2842 3.796111 TCATATCATTCTCTCCTCCCCC 58.204 50.000 0.00 0.00 0.00 5.40
2652 2843 4.224818 CCTTCATATCATTCTCTCCTCCCC 59.775 50.000 0.00 0.00 0.00 4.81
2653 2844 4.843516 ACCTTCATATCATTCTCTCCTCCC 59.156 45.833 0.00 0.00 0.00 4.30
2654 2845 6.432403 AACCTTCATATCATTCTCTCCTCC 57.568 41.667 0.00 0.00 0.00 4.30
2655 2846 8.646900 ACTTAACCTTCATATCATTCTCTCCTC 58.353 37.037 0.00 0.00 0.00 3.71
2656 2847 8.560124 ACTTAACCTTCATATCATTCTCTCCT 57.440 34.615 0.00 0.00 0.00 3.69
2659 2850 9.771534 GCTTACTTAACCTTCATATCATTCTCT 57.228 33.333 0.00 0.00 0.00 3.10
2660 2851 8.994170 GGCTTACTTAACCTTCATATCATTCTC 58.006 37.037 0.00 0.00 0.00 2.87
2661 2852 8.718656 AGGCTTACTTAACCTTCATATCATTCT 58.281 33.333 0.00 0.00 0.00 2.40
2662 2853 8.910351 AGGCTTACTTAACCTTCATATCATTC 57.090 34.615 0.00 0.00 0.00 2.67
2663 2854 9.780186 GTAGGCTTACTTAACCTTCATATCATT 57.220 33.333 0.00 0.00 34.92 2.57
2664 2855 8.088981 CGTAGGCTTACTTAACCTTCATATCAT 58.911 37.037 4.33 0.00 34.92 2.45
2665 2856 7.069085 ACGTAGGCTTACTTAACCTTCATATCA 59.931 37.037 4.33 0.00 34.92 2.15
2666 2857 7.432059 ACGTAGGCTTACTTAACCTTCATATC 58.568 38.462 4.33 0.00 34.92 1.63
2667 2858 7.357429 ACGTAGGCTTACTTAACCTTCATAT 57.643 36.000 4.33 0.00 34.92 1.78
2668 2859 6.780457 ACGTAGGCTTACTTAACCTTCATA 57.220 37.500 4.33 0.00 34.92 2.15
2669 2860 5.672421 ACGTAGGCTTACTTAACCTTCAT 57.328 39.130 4.33 0.00 34.92 2.57
2670 2861 5.126061 CCTACGTAGGCTTACTTAACCTTCA 59.874 44.000 27.93 0.00 36.53 3.02
2671 2862 5.358160 TCCTACGTAGGCTTACTTAACCTTC 59.642 44.000 32.84 0.00 43.31 3.46
2672 2863 5.126222 GTCCTACGTAGGCTTACTTAACCTT 59.874 44.000 32.84 0.00 43.31 3.50
2673 2864 4.642437 GTCCTACGTAGGCTTACTTAACCT 59.358 45.833 32.84 0.00 43.31 3.50
2674 2865 4.202060 GGTCCTACGTAGGCTTACTTAACC 60.202 50.000 32.84 26.80 43.31 2.85
2675 2866 4.642437 AGGTCCTACGTAGGCTTACTTAAC 59.358 45.833 32.84 22.77 43.31 2.01
2676 2867 4.860022 AGGTCCTACGTAGGCTTACTTAA 58.140 43.478 32.84 13.41 43.31 1.85
2677 2868 4.510167 AGGTCCTACGTAGGCTTACTTA 57.490 45.455 32.84 14.14 43.31 2.24
2678 2869 3.378861 AGGTCCTACGTAGGCTTACTT 57.621 47.619 32.84 20.78 43.31 2.24
2679 2870 3.378861 AAGGTCCTACGTAGGCTTACT 57.621 47.619 32.84 23.48 43.31 2.24
2680 2871 3.488216 CGAAAGGTCCTACGTAGGCTTAC 60.488 52.174 32.84 25.35 43.31 2.34
2681 2872 2.684881 CGAAAGGTCCTACGTAGGCTTA 59.315 50.000 32.84 16.31 43.31 3.09
2682 2873 1.475682 CGAAAGGTCCTACGTAGGCTT 59.524 52.381 32.84 26.78 43.31 4.35
2683 2874 1.101331 CGAAAGGTCCTACGTAGGCT 58.899 55.000 32.84 23.10 43.31 4.58
2684 2875 0.813821 ACGAAAGGTCCTACGTAGGC 59.186 55.000 32.84 26.25 43.31 3.93
2696 2887 8.537332 GGCAAAAATGCTAGACCTACGAAAGG 62.537 46.154 6.98 6.98 42.23 3.11
2697 2888 5.324697 GCAAAAATGCTAGACCTACGAAAG 58.675 41.667 0.00 0.00 0.00 2.62
2698 2889 4.155280 GGCAAAAATGCTAGACCTACGAAA 59.845 41.667 0.00 0.00 34.73 3.46
2699 2890 3.687698 GGCAAAAATGCTAGACCTACGAA 59.312 43.478 0.00 0.00 34.73 3.85
2700 2891 3.267483 GGCAAAAATGCTAGACCTACGA 58.733 45.455 0.00 0.00 34.73 3.43
2701 2892 3.006940 TGGCAAAAATGCTAGACCTACG 58.993 45.455 0.00 0.00 34.73 3.51
2702 2893 3.378427 CCTGGCAAAAATGCTAGACCTAC 59.622 47.826 14.68 0.00 44.67 3.18
2703 2894 3.620488 CCTGGCAAAAATGCTAGACCTA 58.380 45.455 14.68 0.00 44.67 3.08
2704 2895 2.450476 CCTGGCAAAAATGCTAGACCT 58.550 47.619 14.68 0.00 44.67 3.85
2705 2896 1.478105 CCCTGGCAAAAATGCTAGACC 59.522 52.381 14.68 0.00 44.67 3.85
2706 2897 2.164422 GACCCTGGCAAAAATGCTAGAC 59.836 50.000 14.68 3.78 44.67 2.59
2707 2898 2.446435 GACCCTGGCAAAAATGCTAGA 58.554 47.619 14.68 0.00 44.67 2.43
2708 2899 1.478105 GGACCCTGGCAAAAATGCTAG 59.522 52.381 7.15 7.15 42.09 3.42
2709 2900 1.077005 AGGACCCTGGCAAAAATGCTA 59.923 47.619 0.40 0.00 34.73 3.49
2710 2901 0.178924 AGGACCCTGGCAAAAATGCT 60.179 50.000 0.40 0.00 34.73 3.79
2711 2902 0.247460 GAGGACCCTGGCAAAAATGC 59.753 55.000 0.00 0.00 0.00 3.56
2712 2903 1.547372 CAGAGGACCCTGGCAAAAATG 59.453 52.381 0.00 0.00 0.00 2.32
2713 2904 1.147817 ACAGAGGACCCTGGCAAAAAT 59.852 47.619 12.81 0.00 38.44 1.82
2714 2905 0.555769 ACAGAGGACCCTGGCAAAAA 59.444 50.000 12.81 0.00 38.44 1.94
2715 2906 0.110486 GACAGAGGACCCTGGCAAAA 59.890 55.000 10.14 0.00 41.78 2.44
2716 2907 1.761174 GACAGAGGACCCTGGCAAA 59.239 57.895 10.14 0.00 41.78 3.68
2717 2908 2.583441 CGACAGAGGACCCTGGCAA 61.583 63.158 14.14 0.00 42.28 4.52
2718 2909 2.997315 CGACAGAGGACCCTGGCA 60.997 66.667 14.14 0.00 42.28 4.92
2719 2910 2.680352 TCGACAGAGGACCCTGGC 60.680 66.667 12.81 9.55 38.81 4.85
2720 2911 2.716017 GCTCGACAGAGGACCCTGG 61.716 68.421 12.81 0.00 44.51 4.45
2721 2912 2.716017 GGCTCGACAGAGGACCCTG 61.716 68.421 8.07 8.07 44.51 4.45
2722 2913 2.363147 GGCTCGACAGAGGACCCT 60.363 66.667 0.00 0.00 44.51 4.34
2748 2939 2.663279 AATCGCTTTCAACGTGTCAC 57.337 45.000 0.00 0.00 0.00 3.67
2749 2940 4.327898 GGTATAATCGCTTTCAACGTGTCA 59.672 41.667 0.00 0.00 0.00 3.58
2750 2941 4.565564 AGGTATAATCGCTTTCAACGTGTC 59.434 41.667 0.00 0.00 0.00 3.67
2751 2942 4.501071 AGGTATAATCGCTTTCAACGTGT 58.499 39.130 0.00 0.00 0.00 4.49
2752 2943 5.255596 CAAGGTATAATCGCTTTCAACGTG 58.744 41.667 0.00 0.00 0.00 4.49
2753 2944 4.201783 GCAAGGTATAATCGCTTTCAACGT 60.202 41.667 0.00 0.00 0.00 3.99
2754 2945 4.271687 GCAAGGTATAATCGCTTTCAACG 58.728 43.478 0.00 0.00 0.00 4.10
2755 2946 4.271687 CGCAAGGTATAATCGCTTTCAAC 58.728 43.478 0.00 0.00 0.00 3.18
2756 2947 3.242608 GCGCAAGGTATAATCGCTTTCAA 60.243 43.478 0.30 0.00 42.19 2.69
2757 2948 2.286833 GCGCAAGGTATAATCGCTTTCA 59.713 45.455 0.30 0.00 42.19 2.69
2758 2949 2.286833 TGCGCAAGGTATAATCGCTTTC 59.713 45.455 8.16 0.00 45.24 2.62
2759 2950 2.285083 TGCGCAAGGTATAATCGCTTT 58.715 42.857 8.16 0.00 45.24 3.51
2760 2951 1.948104 TGCGCAAGGTATAATCGCTT 58.052 45.000 8.16 0.00 45.24 4.68
2761 2952 1.948104 TTGCGCAAGGTATAATCGCT 58.052 45.000 21.02 0.00 45.24 4.93
2762 2953 2.480419 AGATTGCGCAAGGTATAATCGC 59.520 45.455 28.62 7.03 45.23 4.58
2763 2954 3.665323 GCAGATTGCGCAAGGTATAATCG 60.665 47.826 28.62 14.76 34.01 3.34
2764 2955 3.814945 GCAGATTGCGCAAGGTATAATC 58.185 45.455 28.62 18.19 31.71 1.75
2765 2956 3.904136 GCAGATTGCGCAAGGTATAAT 57.096 42.857 28.62 9.63 31.71 1.28
2776 2967 6.641201 TCTCACAATAGAGTTGCAGATTGCG 61.641 44.000 0.00 0.00 40.42 4.85
2777 2968 4.633126 TCTCACAATAGAGTTGCAGATTGC 59.367 41.667 0.00 0.00 39.16 3.56
2778 2969 5.064452 GGTCTCACAATAGAGTTGCAGATTG 59.936 44.000 0.00 0.00 36.97 2.67
2779 2970 5.046014 AGGTCTCACAATAGAGTTGCAGATT 60.046 40.000 0.00 0.00 36.97 2.40
2780 2971 4.469227 AGGTCTCACAATAGAGTTGCAGAT 59.531 41.667 0.00 0.00 36.97 2.90
2781 2972 3.834813 AGGTCTCACAATAGAGTTGCAGA 59.165 43.478 0.00 0.00 36.97 4.26
2782 2973 4.199432 AGGTCTCACAATAGAGTTGCAG 57.801 45.455 0.00 0.00 36.97 4.41
2783 2974 5.422012 TCATAGGTCTCACAATAGAGTTGCA 59.578 40.000 0.00 0.00 36.97 4.08
2784 2975 5.907207 TCATAGGTCTCACAATAGAGTTGC 58.093 41.667 0.00 0.00 36.97 4.17
2785 2976 7.551585 ACTTCATAGGTCTCACAATAGAGTTG 58.448 38.462 0.00 0.00 36.97 3.16
2786 2977 7.726033 ACTTCATAGGTCTCACAATAGAGTT 57.274 36.000 0.00 0.00 36.97 3.01
2787 2978 7.726033 AACTTCATAGGTCTCACAATAGAGT 57.274 36.000 0.00 0.00 36.97 3.24
2788 2979 8.474025 AGAAACTTCATAGGTCTCACAATAGAG 58.526 37.037 0.00 0.00 36.97 2.43
2789 2980 8.253810 CAGAAACTTCATAGGTCTCACAATAGA 58.746 37.037 0.00 0.00 0.00 1.98
2790 2981 7.493971 CCAGAAACTTCATAGGTCTCACAATAG 59.506 40.741 0.00 0.00 0.00 1.73
2791 2982 7.180229 TCCAGAAACTTCATAGGTCTCACAATA 59.820 37.037 0.00 0.00 0.00 1.90
2792 2983 6.013379 TCCAGAAACTTCATAGGTCTCACAAT 60.013 38.462 0.00 0.00 0.00 2.71
2793 2984 5.306937 TCCAGAAACTTCATAGGTCTCACAA 59.693 40.000 0.00 0.00 0.00 3.33
2794 2985 4.838423 TCCAGAAACTTCATAGGTCTCACA 59.162 41.667 0.00 0.00 0.00 3.58
2795 2986 5.186021 TCTCCAGAAACTTCATAGGTCTCAC 59.814 44.000 0.00 0.00 0.00 3.51
2796 2987 5.333581 TCTCCAGAAACTTCATAGGTCTCA 58.666 41.667 0.00 0.00 0.00 3.27
2797 2988 5.923733 TCTCCAGAAACTTCATAGGTCTC 57.076 43.478 0.00 0.00 0.00 3.36
2798 2989 6.882768 ATTCTCCAGAAACTTCATAGGTCT 57.117 37.500 0.00 0.00 37.61 3.85
2799 2990 8.884726 GTTTATTCTCCAGAAACTTCATAGGTC 58.115 37.037 0.00 0.00 37.61 3.85
2800 2991 8.606830 AGTTTATTCTCCAGAAACTTCATAGGT 58.393 33.333 0.00 0.00 39.75 3.08
2801 2992 9.103861 GAGTTTATTCTCCAGAAACTTCATAGG 57.896 37.037 1.18 0.00 42.10 2.57
2802 2993 9.883142 AGAGTTTATTCTCCAGAAACTTCATAG 57.117 33.333 1.18 0.00 42.10 2.23
2804 2995 9.579932 AAAGAGTTTATTCTCCAGAAACTTCAT 57.420 29.630 1.18 0.00 42.10 2.57
2805 2996 8.980481 AAAGAGTTTATTCTCCAGAAACTTCA 57.020 30.769 1.18 0.00 42.10 3.02
2842 3033 9.846248 GTCATTTAGTTGCTGAAATTAAGTCAT 57.154 29.630 0.00 0.00 0.00 3.06
2843 3034 8.296713 GGTCATTTAGTTGCTGAAATTAAGTCA 58.703 33.333 0.00 0.00 0.00 3.41
2844 3035 8.296713 TGGTCATTTAGTTGCTGAAATTAAGTC 58.703 33.333 0.00 0.00 0.00 3.01
2845 3036 8.177119 TGGTCATTTAGTTGCTGAAATTAAGT 57.823 30.769 0.00 0.00 0.00 2.24
2848 3039 9.237187 TGTATGGTCATTTAGTTGCTGAAATTA 57.763 29.630 0.00 0.00 0.00 1.40
2849 3040 8.028938 GTGTATGGTCATTTAGTTGCTGAAATT 58.971 33.333 0.00 0.00 0.00 1.82
2850 3041 7.394359 AGTGTATGGTCATTTAGTTGCTGAAAT 59.606 33.333 0.00 0.00 0.00 2.17
2851 3042 6.714810 AGTGTATGGTCATTTAGTTGCTGAAA 59.285 34.615 0.00 0.00 0.00 2.69
2852 3043 6.149308 CAGTGTATGGTCATTTAGTTGCTGAA 59.851 38.462 0.00 0.00 0.00 3.02
2853 3044 5.643348 CAGTGTATGGTCATTTAGTTGCTGA 59.357 40.000 0.00 0.00 0.00 4.26
2854 3045 5.643348 TCAGTGTATGGTCATTTAGTTGCTG 59.357 40.000 0.00 0.00 0.00 4.41
2855 3046 5.804639 TCAGTGTATGGTCATTTAGTTGCT 58.195 37.500 0.00 0.00 0.00 3.91
2856 3047 6.458751 CCATCAGTGTATGGTCATTTAGTTGC 60.459 42.308 11.40 0.00 41.38 4.17
2857 3048 6.823182 TCCATCAGTGTATGGTCATTTAGTTG 59.177 38.462 16.43 0.00 45.67 3.16
2858 3049 6.957631 TCCATCAGTGTATGGTCATTTAGTT 58.042 36.000 16.43 0.00 45.67 2.24
2859 3050 6.560003 TCCATCAGTGTATGGTCATTTAGT 57.440 37.500 16.43 0.00 45.67 2.24
2860 3051 9.212641 CTTATCCATCAGTGTATGGTCATTTAG 57.787 37.037 16.43 7.42 45.67 1.85
2861 3052 8.713971 ACTTATCCATCAGTGTATGGTCATTTA 58.286 33.333 16.43 2.84 45.67 1.40
2862 3053 7.577303 ACTTATCCATCAGTGTATGGTCATTT 58.423 34.615 16.43 5.79 45.67 2.32
2863 3054 7.141758 ACTTATCCATCAGTGTATGGTCATT 57.858 36.000 16.43 7.40 45.67 2.57
2864 3055 6.753913 ACTTATCCATCAGTGTATGGTCAT 57.246 37.500 16.43 9.56 45.67 3.06
2865 3056 6.239317 GCTACTTATCCATCAGTGTATGGTCA 60.239 42.308 16.43 7.27 45.67 4.02
2866 3057 6.159988 GCTACTTATCCATCAGTGTATGGTC 58.840 44.000 16.43 1.30 45.67 4.02
2867 3058 5.602561 TGCTACTTATCCATCAGTGTATGGT 59.397 40.000 16.43 9.75 45.67 3.55
2868 3059 6.101650 TGCTACTTATCCATCAGTGTATGG 57.898 41.667 12.77 12.77 46.69 2.74
2869 3060 5.636965 GCTGCTACTTATCCATCAGTGTATG 59.363 44.000 0.00 0.00 0.00 2.39
2870 3061 5.279708 GGCTGCTACTTATCCATCAGTGTAT 60.280 44.000 0.00 0.00 0.00 2.29
2871 3062 4.039245 GGCTGCTACTTATCCATCAGTGTA 59.961 45.833 0.00 0.00 0.00 2.90
2872 3063 3.181461 GGCTGCTACTTATCCATCAGTGT 60.181 47.826 0.00 0.00 0.00 3.55
2873 3064 3.181462 TGGCTGCTACTTATCCATCAGTG 60.181 47.826 0.00 0.00 0.00 3.66
2874 3065 3.041211 TGGCTGCTACTTATCCATCAGT 58.959 45.455 0.00 0.00 0.00 3.41
2875 3066 3.181462 TGTGGCTGCTACTTATCCATCAG 60.181 47.826 17.13 0.00 0.00 2.90
2876 3067 2.771372 TGTGGCTGCTACTTATCCATCA 59.229 45.455 17.13 0.00 0.00 3.07
2877 3068 3.475566 TGTGGCTGCTACTTATCCATC 57.524 47.619 17.13 0.00 0.00 3.51
2878 3069 5.072329 ACTTATGTGGCTGCTACTTATCCAT 59.928 40.000 17.13 3.99 0.00 3.41
2879 3070 4.408921 ACTTATGTGGCTGCTACTTATCCA 59.591 41.667 17.13 0.00 0.00 3.41
2880 3071 4.962155 ACTTATGTGGCTGCTACTTATCC 58.038 43.478 17.13 0.00 0.00 2.59
2881 3072 7.169982 CAGTAACTTATGTGGCTGCTACTTATC 59.830 40.741 17.13 3.26 0.00 1.75
2882 3073 6.986817 CAGTAACTTATGTGGCTGCTACTTAT 59.013 38.462 17.13 6.01 0.00 1.73
2883 3074 6.070995 ACAGTAACTTATGTGGCTGCTACTTA 60.071 38.462 17.13 12.07 34.39 2.24
2884 3075 5.178797 CAGTAACTTATGTGGCTGCTACTT 58.821 41.667 17.13 13.07 0.00 2.24
2885 3076 4.223032 ACAGTAACTTATGTGGCTGCTACT 59.777 41.667 17.13 5.65 34.39 2.57
2886 3077 4.504858 ACAGTAACTTATGTGGCTGCTAC 58.495 43.478 9.40 9.40 34.39 3.58
2887 3078 4.819105 ACAGTAACTTATGTGGCTGCTA 57.181 40.909 0.00 0.00 34.39 3.49
2888 3079 3.703001 ACAGTAACTTATGTGGCTGCT 57.297 42.857 0.00 0.00 34.39 4.24
2889 3080 4.693566 TGTAACAGTAACTTATGTGGCTGC 59.306 41.667 10.66 0.00 34.39 5.25
2890 3081 5.932303 ACTGTAACAGTAACTTATGTGGCTG 59.068 40.000 0.00 9.70 43.46 4.85
2891 3082 6.110411 ACTGTAACAGTAACTTATGTGGCT 57.890 37.500 0.00 0.00 43.46 4.75
2892 3083 6.796705 AACTGTAACAGTAACTTATGTGGC 57.203 37.500 0.00 0.00 44.62 5.01
2893 3084 7.589954 GCAAAACTGTAACAGTAACTTATGTGG 59.410 37.037 0.00 0.00 44.62 4.17
2894 3085 8.342634 AGCAAAACTGTAACAGTAACTTATGTG 58.657 33.333 0.00 0.00 44.62 3.21
2895 3086 8.446599 AGCAAAACTGTAACAGTAACTTATGT 57.553 30.769 0.00 0.00 44.62 2.29
2896 3087 9.730420 AAAGCAAAACTGTAACAGTAACTTATG 57.270 29.630 0.00 0.00 44.62 1.90
2909 3100 9.502091 ACTGAGACATAATAAAGCAAAACTGTA 57.498 29.630 0.00 0.00 0.00 2.74
2910 3101 8.396272 ACTGAGACATAATAAAGCAAAACTGT 57.604 30.769 0.00 0.00 0.00 3.55
2911 3102 8.506437 TGACTGAGACATAATAAAGCAAAACTG 58.494 33.333 0.00 0.00 0.00 3.16
2912 3103 8.621532 TGACTGAGACATAATAAAGCAAAACT 57.378 30.769 0.00 0.00 0.00 2.66
2913 3104 9.846248 ATTGACTGAGACATAATAAAGCAAAAC 57.154 29.630 0.00 0.00 0.00 2.43
2923 3114 9.664332 GGAATATAGCATTGACTGAGACATAAT 57.336 33.333 0.00 0.00 0.00 1.28
2974 3345 2.890474 ATGGATCACGAACGCCGC 60.890 61.111 0.00 0.00 43.32 6.53
2997 3368 1.335697 GCTCAAAGACGACGACCGAC 61.336 60.000 0.00 3.19 41.76 4.79
2998 3369 1.081641 GCTCAAAGACGACGACCGA 60.082 57.895 0.00 0.00 41.76 4.69
3009 3380 2.037136 CCTGTGCTCCGGCTCAAAG 61.037 63.158 0.00 0.81 40.67 2.77
3081 3452 1.202110 ACGACACCGATAACTACTGCG 60.202 52.381 0.00 0.00 39.50 5.18
3091 3462 0.739561 GCCTTCTCTACGACACCGAT 59.260 55.000 0.00 0.00 39.50 4.18
3098 3469 2.707849 GGCGGTGCCTTCTCTACGA 61.708 63.158 0.00 0.00 46.69 3.43
3117 3488 4.458164 GCAGTGGCACGCAAATAC 57.542 55.556 22.96 3.45 44.14 1.89
3144 3515 1.156736 CAACGTCCACCCAAGATGAC 58.843 55.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.