Multiple sequence alignment - TraesCS7B01G127300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G127300 chr7B 100.000 3287 0 0 1 3287 151651784 151655070 0.000000e+00 6071.0
1 TraesCS7B01G127300 chr7B 91.549 71 4 2 2503 2572 742417139 742417070 2.700000e-16 97.1
2 TraesCS7B01G127300 chr7A 89.952 2498 133 45 1 2415 188037239 188034777 0.000000e+00 3114.0
3 TraesCS7B01G127300 chr7A 85.761 611 61 10 2423 3024 552452534 552451941 1.000000e-174 623.0
4 TraesCS7B01G127300 chr7A 85.597 611 64 7 2423 3024 642252400 642251805 1.300000e-173 619.0
5 TraesCS7B01G127300 chr7A 85.434 611 65 7 2423 3024 690375684 690375089 6.030000e-172 614.0
6 TraesCS7B01G127300 chr7D 95.487 1551 52 6 880 2415 183231404 183232951 0.000000e+00 2460.0
7 TraesCS7B01G127300 chr7D 88.500 400 6 13 11 392 183227381 183227758 6.470000e-122 448.0
8 TraesCS7B01G127300 chr7D 91.667 72 4 2 2502 2572 473877967 473877897 7.510000e-17 99.0
9 TraesCS7B01G127300 chr4A 91.538 969 44 10 982 1949 616113125 616114056 0.000000e+00 1301.0
10 TraesCS7B01G127300 chr4A 85.597 611 64 9 2423 3024 44442203 44441608 1.300000e-173 619.0
11 TraesCS7B01G127300 chr4A 91.549 71 4 2 2503 2572 589792434 589792365 2.700000e-16 97.1
12 TraesCS7B01G127300 chr4A 89.610 77 6 2 2497 2572 743325886 743325961 2.700000e-16 97.1
13 TraesCS7B01G127300 chr4A 100.000 29 0 0 1391 1419 164522617 164522645 2.000000e-03 54.7
14 TraesCS7B01G127300 chr2D 85.556 630 63 17 2423 3043 579062545 579061935 4.630000e-178 634.0
15 TraesCS7B01G127300 chr2D 85.597 611 60 10 2423 3024 597828979 597828388 1.680000e-172 616.0
16 TraesCS7B01G127300 chr2D 91.667 72 4 2 2502 2572 623886993 623887063 7.510000e-17 99.0
17 TraesCS7B01G127300 chr2D 94.872 39 1 1 3076 3113 34016215 34016177 3.540000e-05 60.2
18 TraesCS7B01G127300 chr6A 85.572 603 60 12 2432 3024 563480206 563480791 1.010000e-169 606.0
19 TraesCS7B01G127300 chr5A 85.524 601 62 9 2433 3024 493508280 493507696 3.630000e-169 604.0
20 TraesCS7B01G127300 chr5A 82.576 132 12 10 2992 3115 60755438 60755566 4.490000e-19 106.0
21 TraesCS7B01G127300 chr3A 84.790 618 70 11 2423 3033 336890850 336891450 1.690000e-167 599.0
22 TraesCS7B01G127300 chr3A 94.556 349 17 1 978 1326 38118259 38117913 3.730000e-149 538.0
23 TraesCS7B01G127300 chr2A 94.985 339 15 1 981 1319 11913963 11913627 6.250000e-147 531.0
24 TraesCS7B01G127300 chr2A 80.449 312 44 16 2910 3208 591576713 591576406 4.270000e-54 222.0
25 TraesCS7B01G127300 chr2B 93.878 343 18 2 978 1319 9745228 9744888 6.290000e-142 514.0
26 TraesCS7B01G127300 chr2B 92.308 39 2 1 3076 3113 56468609 56468571 2.000000e-03 54.7
27 TraesCS7B01G127300 chr1D 96.040 303 10 1 977 1279 402152435 402152735 2.950000e-135 492.0
28 TraesCS7B01G127300 chr3B 90.942 276 8 2 978 1253 566638714 566638972 4.030000e-94 355.0
29 TraesCS7B01G127300 chr3B 96.774 31 1 0 3083 3113 60364696 60364726 6.000000e-03 52.8
30 TraesCS7B01G127300 chr1A 78.919 185 35 3 1178 1361 563338001 563338182 4.450000e-24 122.0
31 TraesCS7B01G127300 chr3D 78.191 188 30 9 3035 3219 355734192 355734371 3.470000e-20 110.0
32 TraesCS7B01G127300 chr3D 97.143 35 1 0 3087 3121 611750895 611750861 3.540000e-05 60.2
33 TraesCS7B01G127300 chr5B 74.733 281 44 14 2500 2774 338616541 338616282 2.090000e-17 100.0
34 TraesCS7B01G127300 chrUn 91.667 72 4 2 2502 2572 112647816 112647746 7.510000e-17 99.0
35 TraesCS7B01G127300 chr6D 91.667 72 4 2 2502 2572 57481203 57481133 7.510000e-17 99.0
36 TraesCS7B01G127300 chr5D 91.549 71 4 2 2503 2572 375321265 375321196 2.700000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G127300 chr7B 151651784 151655070 3286 False 6071 6071 100.0000 1 3287 1 chr7B.!!$F1 3286
1 TraesCS7B01G127300 chr7A 188034777 188037239 2462 True 3114 3114 89.9520 1 2415 1 chr7A.!!$R1 2414
2 TraesCS7B01G127300 chr7A 552451941 552452534 593 True 623 623 85.7610 2423 3024 1 chr7A.!!$R2 601
3 TraesCS7B01G127300 chr7A 642251805 642252400 595 True 619 619 85.5970 2423 3024 1 chr7A.!!$R3 601
4 TraesCS7B01G127300 chr7A 690375089 690375684 595 True 614 614 85.4340 2423 3024 1 chr7A.!!$R4 601
5 TraesCS7B01G127300 chr7D 183227381 183232951 5570 False 1454 2460 91.9935 11 2415 2 chr7D.!!$F1 2404
6 TraesCS7B01G127300 chr4A 616113125 616114056 931 False 1301 1301 91.5380 982 1949 1 chr4A.!!$F2 967
7 TraesCS7B01G127300 chr4A 44441608 44442203 595 True 619 619 85.5970 2423 3024 1 chr4A.!!$R1 601
8 TraesCS7B01G127300 chr2D 579061935 579062545 610 True 634 634 85.5560 2423 3043 1 chr2D.!!$R2 620
9 TraesCS7B01G127300 chr2D 597828388 597828979 591 True 616 616 85.5970 2423 3024 1 chr2D.!!$R3 601
10 TraesCS7B01G127300 chr6A 563480206 563480791 585 False 606 606 85.5720 2432 3024 1 chr6A.!!$F1 592
11 TraesCS7B01G127300 chr5A 493507696 493508280 584 True 604 604 85.5240 2433 3024 1 chr5A.!!$R1 591
12 TraesCS7B01G127300 chr3A 336890850 336891450 600 False 599 599 84.7900 2423 3033 1 chr3A.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.102120 GACGGACTCTCTGATGCCAG 59.898 60.0 0.00 0.00 41.74 4.85 F
723 3998 0.250234 TGGAAATCTCAGTCGGCTGG 59.750 55.0 18.55 8.21 42.78 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2035 5323 1.037579 TGCTCGGGTGTCATCTCGAT 61.038 55.0 0.0 0.0 0.0 3.59 R
2370 5660 0.600782 GTTCCGGTCGCACAAAGGTA 60.601 55.0 0.0 0.0 0.0 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.407365 TCCTTCAGATCGACAGCCATATA 58.593 43.478 0.00 0.00 0.00 0.86
44 45 4.460731 TCCTTCAGATCGACAGCCATATAG 59.539 45.833 0.00 0.00 0.00 1.31
45 46 4.219507 CCTTCAGATCGACAGCCATATAGT 59.780 45.833 0.00 0.00 0.00 2.12
46 47 5.416013 CCTTCAGATCGACAGCCATATAGTA 59.584 44.000 0.00 0.00 0.00 1.82
47 48 6.096141 CCTTCAGATCGACAGCCATATAGTAT 59.904 42.308 0.00 0.00 0.00 2.12
69 70 8.284435 AGTATCACTACCCTACAAGGTTGTATA 58.716 37.037 3.08 0.00 42.86 1.47
70 71 6.780457 TCACTACCCTACAAGGTTGTATAC 57.220 41.667 3.08 0.00 42.86 1.47
71 72 5.357878 TCACTACCCTACAAGGTTGTATACG 59.642 44.000 3.08 0.00 42.86 3.06
136 137 0.102120 GACGGACTCTCTGATGCCAG 59.898 60.000 0.00 0.00 41.74 4.85
220 222 1.213678 TCTTTCCGAGATCTACCCCGA 59.786 52.381 0.00 0.00 0.00 5.14
223 225 2.376695 TCCGAGATCTACCCCGAATT 57.623 50.000 0.00 0.00 0.00 2.17
257 261 1.036707 GCTGCCTCTTCCGAGAGTAT 58.963 55.000 3.06 0.00 46.59 2.12
275 279 6.067263 GAGTATCTACTCTGTTCGCAATCT 57.933 41.667 9.61 0.00 46.99 2.40
276 280 6.067263 AGTATCTACTCTGTTCGCAATCTC 57.933 41.667 0.00 0.00 0.00 2.75
277 281 5.825679 AGTATCTACTCTGTTCGCAATCTCT 59.174 40.000 0.00 0.00 0.00 3.10
278 282 6.993308 AGTATCTACTCTGTTCGCAATCTCTA 59.007 38.462 0.00 0.00 0.00 2.43
390 3559 4.096003 CGGGAACATGGCCGGACT 62.096 66.667 9.82 0.00 0.00 3.85
392 3561 2.046285 GGGAACATGGCCGGACTTG 61.046 63.158 21.19 21.19 0.00 3.16
393 3562 2.700773 GGAACATGGCCGGACTTGC 61.701 63.158 22.59 7.63 0.00 4.01
418 3609 6.599356 AAATTTAGCCCCTCAAACGTTTAT 57.401 33.333 14.20 0.00 0.00 1.40
419 3610 5.576447 ATTTAGCCCCTCAAACGTTTATG 57.424 39.130 14.20 9.15 0.00 1.90
427 3618 4.457603 CCCTCAAACGTTTATGGACATGAA 59.542 41.667 24.36 0.00 0.00 2.57
448 3639 5.825151 TGAATATGTGTCTGTTTTGTGTCCA 59.175 36.000 0.00 0.00 0.00 4.02
454 3645 6.734137 TGTGTCTGTTTTGTGTCCATATTTC 58.266 36.000 0.00 0.00 0.00 2.17
459 3650 7.591426 GTCTGTTTTGTGTCCATATTTCTTCAC 59.409 37.037 0.00 0.00 0.00 3.18
480 3671 2.748605 GCACGCAGCTATGTCTCTTAT 58.251 47.619 0.00 0.00 41.15 1.73
482 3673 3.557595 GCACGCAGCTATGTCTCTTATTT 59.442 43.478 0.00 0.00 41.15 1.40
483 3674 4.034510 GCACGCAGCTATGTCTCTTATTTT 59.965 41.667 0.00 0.00 41.15 1.82
484 3675 5.496387 CACGCAGCTATGTCTCTTATTTTG 58.504 41.667 0.00 0.00 0.00 2.44
490 3682 9.840427 GCAGCTATGTCTCTTATTTTGTTTTTA 57.160 29.630 0.00 0.00 0.00 1.52
563 3755 0.801872 CGTGGCAATTGATCGGACAA 59.198 50.000 10.34 0.00 0.00 3.18
568 3760 2.426738 GGCAATTGATCGGACAAATCCA 59.573 45.455 10.34 0.00 46.67 3.41
617 3811 8.938801 TTTTGGATATATTGCCTCATGTATGT 57.061 30.769 0.00 0.00 0.00 2.29
637 3831 3.118408 TGTGTTAAGTGTGAGGAGTGCTT 60.118 43.478 0.00 0.00 0.00 3.91
640 3834 4.202357 TGTTAAGTGTGAGGAGTGCTTGAT 60.202 41.667 0.00 0.00 0.00 2.57
643 3837 3.169099 AGTGTGAGGAGTGCTTGATAGT 58.831 45.455 0.00 0.00 0.00 2.12
650 3844 2.599082 GGAGTGCTTGATAGTCGAAACG 59.401 50.000 0.00 0.00 0.00 3.60
651 3845 3.499048 GAGTGCTTGATAGTCGAAACGA 58.501 45.455 0.00 0.00 0.00 3.85
661 3855 7.751047 TGATAGTCGAAACGAATAGAAAAGG 57.249 36.000 7.32 0.00 39.62 3.11
662 3856 4.923264 AGTCGAAACGAATAGAAAAGGC 57.077 40.909 0.00 0.00 37.72 4.35
679 3874 1.330655 GGCTGAGGAGTCCGATTGGA 61.331 60.000 2.76 0.00 43.88 3.53
689 3884 1.116308 TCCGATTGGATCAGCGGTTA 58.884 50.000 9.27 0.00 43.92 2.85
691 3886 1.800586 CCGATTGGATCAGCGGTTATG 59.199 52.381 1.78 0.00 38.99 1.90
695 3932 1.600916 GGATCAGCGGTTATGCCCC 60.601 63.158 0.00 0.00 34.65 5.80
710 3947 2.465813 TGCCCCGATCAATTTGGAAAT 58.534 42.857 0.00 0.00 0.00 2.17
719 3994 5.503031 CGATCAATTTGGAAATCTCAGTCGG 60.503 44.000 0.00 0.00 0.00 4.79
723 3998 0.250234 TGGAAATCTCAGTCGGCTGG 59.750 55.000 18.55 8.21 42.78 4.85
730 4005 2.918712 CTCAGTCGGCTGGGAATTAT 57.081 50.000 12.81 0.00 45.98 1.28
751 4026 4.489679 TCGGAGTCTCATCGATGTTATG 57.510 45.455 24.09 13.12 0.00 1.90
758 4033 4.798907 GTCTCATCGATGTTATGTTCGTGT 59.201 41.667 24.09 0.00 36.74 4.49
765 4040 6.557110 TCGATGTTATGTTCGTGTGATCTTA 58.443 36.000 0.00 0.00 36.74 2.10
767 4042 6.252655 CGATGTTATGTTCGTGTGATCTTACA 59.747 38.462 0.00 0.00 0.00 2.41
775 4050 5.084818 TCGTGTGATCTTACATGGACATT 57.915 39.130 0.00 0.00 37.98 2.71
860 4136 2.043801 GAGATCTAGCCCCACCCTCTAT 59.956 54.545 0.00 0.00 0.00 1.98
861 4137 3.269906 GAGATCTAGCCCCACCCTCTATA 59.730 52.174 0.00 0.00 0.00 1.31
862 4138 2.994957 TCTAGCCCCACCCTCTATAC 57.005 55.000 0.00 0.00 0.00 1.47
863 4139 1.075050 TCTAGCCCCACCCTCTATACG 59.925 57.143 0.00 0.00 0.00 3.06
864 4140 0.855598 TAGCCCCACCCTCTATACGT 59.144 55.000 0.00 0.00 0.00 3.57
865 4141 0.469518 AGCCCCACCCTCTATACGTC 60.470 60.000 0.00 0.00 0.00 4.34
866 4142 0.469518 GCCCCACCCTCTATACGTCT 60.470 60.000 0.00 0.00 0.00 4.18
867 4143 1.202976 GCCCCACCCTCTATACGTCTA 60.203 57.143 0.00 0.00 0.00 2.59
868 4144 2.792878 CCCCACCCTCTATACGTCTAG 58.207 57.143 0.00 0.00 0.00 2.43
869 4145 2.161030 CCCACCCTCTATACGTCTAGC 58.839 57.143 3.19 0.00 0.00 3.42
870 4146 2.488528 CCCACCCTCTATACGTCTAGCA 60.489 54.545 3.19 0.00 0.00 3.49
871 4147 3.422796 CCACCCTCTATACGTCTAGCAT 58.577 50.000 3.19 0.00 0.00 3.79
872 4148 3.827302 CCACCCTCTATACGTCTAGCATT 59.173 47.826 3.19 0.00 0.00 3.56
873 4149 4.281182 CCACCCTCTATACGTCTAGCATTT 59.719 45.833 3.19 0.00 0.00 2.32
874 4150 5.221461 CCACCCTCTATACGTCTAGCATTTT 60.221 44.000 3.19 0.00 0.00 1.82
875 4151 6.281405 CACCCTCTATACGTCTAGCATTTTT 58.719 40.000 3.19 0.00 0.00 1.94
876 4152 6.201044 CACCCTCTATACGTCTAGCATTTTTG 59.799 42.308 3.19 0.00 0.00 2.44
877 4153 5.177696 CCCTCTATACGTCTAGCATTTTTGC 59.822 44.000 3.19 0.00 0.00 3.68
879 4155 7.145985 CCTCTATACGTCTAGCATTTTTGCTA 58.854 38.462 7.41 7.41 44.28 3.49
971 4253 4.086706 AGTAGTACAATAATGGGGCTGC 57.913 45.455 2.52 0.00 0.00 5.25
1147 4429 2.282958 TCACCGAGCCGTCCTTCT 60.283 61.111 0.00 0.00 0.00 2.85
1515 4803 3.391049 GTTCTTCGACTACTTTGGCACT 58.609 45.455 0.00 0.00 0.00 4.40
1662 4950 1.080705 CACGTTCTCCTCCGGTGAC 60.081 63.158 4.76 0.00 0.00 3.67
1881 5169 1.455217 CGACCTCCCCCTGTACGAT 60.455 63.158 0.00 0.00 0.00 3.73
1937 5225 2.853914 GCTGTCGTCGCTTTGTCC 59.146 61.111 0.00 0.00 0.00 4.02
1950 5238 0.320374 TTTGTCCGTCGAGCCAAGAT 59.680 50.000 0.00 0.00 0.00 2.40
2013 5301 4.814294 GACGAGGATTGCGGCGGT 62.814 66.667 9.78 0.00 0.00 5.68
2058 5346 0.247736 AGATGACACCCGAGCAGAAC 59.752 55.000 0.00 0.00 0.00 3.01
2127 5415 0.667487 CGCTGTTGATCACTGACCGT 60.667 55.000 0.00 0.00 0.00 4.83
2154 5442 5.265477 CGGTGCATGTACATTTTACATCTG 58.735 41.667 16.11 0.00 36.13 2.90
2157 5445 6.458751 GGTGCATGTACATTTTACATCTGGAG 60.459 42.308 16.11 0.00 36.13 3.86
2159 5447 6.883756 TGCATGTACATTTTACATCTGGAGAA 59.116 34.615 5.37 0.00 36.13 2.87
2288 5576 4.346418 TGGTGGAAAGGCACATGTTTAATT 59.654 37.500 0.00 0.00 0.00 1.40
2292 5580 5.070981 TGGAAAGGCACATGTTTAATTTGGA 59.929 36.000 0.00 0.00 0.00 3.53
2297 5585 4.233789 GCACATGTTTAATTTGGAGCGAA 58.766 39.130 0.00 0.00 0.00 4.70
2305 5593 7.877003 TGTTTAATTTGGAGCGAACATTTCTA 58.123 30.769 0.00 0.00 0.00 2.10
2320 5608 5.597806 ACATTTCTATCTCATCGGCGTAAA 58.402 37.500 6.85 0.00 0.00 2.01
2341 5631 2.093658 ACTGGCCGACCTGTGTATTAAG 60.094 50.000 0.00 0.00 45.61 1.85
2370 5660 7.962918 GTGTTAATTATGTTCAAGATCGCAACT 59.037 33.333 6.18 0.00 0.00 3.16
2381 5671 0.796312 ATCGCAACTACCTTTGTGCG 59.204 50.000 10.41 10.41 45.56 5.34
2393 5683 0.809385 TTTGTGCGACCGGAACAAAA 59.191 45.000 9.46 0.94 0.00 2.44
2394 5684 0.809385 TTGTGCGACCGGAACAAAAA 59.191 45.000 9.46 0.00 0.00 1.94
2404 5694 3.067601 ACCGGAACAAAAACCTCAACATC 59.932 43.478 9.46 0.00 0.00 3.06
2407 5697 5.183140 CCGGAACAAAAACCTCAACATCTAT 59.817 40.000 0.00 0.00 0.00 1.98
2415 5705 9.612620 CAAAAACCTCAACATCTATTTCTGTAC 57.387 33.333 0.00 0.00 0.00 2.90
2416 5706 9.574516 AAAAACCTCAACATCTATTTCTGTACT 57.425 29.630 0.00 0.00 0.00 2.73
2417 5707 8.779354 AAACCTCAACATCTATTTCTGTACTC 57.221 34.615 0.00 0.00 0.00 2.59
2418 5708 6.879400 ACCTCAACATCTATTTCTGTACTCC 58.121 40.000 0.00 0.00 0.00 3.85
2419 5709 6.127026 ACCTCAACATCTATTTCTGTACTCCC 60.127 42.308 0.00 0.00 0.00 4.30
2420 5710 6.098982 CCTCAACATCTATTTCTGTACTCCCT 59.901 42.308 0.00 0.00 0.00 4.20
2421 5711 7.113658 TCAACATCTATTTCTGTACTCCCTC 57.886 40.000 0.00 0.00 0.00 4.30
2425 5715 1.497161 ATTTCTGTACTCCCTCCCGG 58.503 55.000 0.00 0.00 0.00 5.73
2460 5750 3.727227 CGTTTTAAAAGAAGACCCGTTGC 59.273 43.478 0.00 0.00 0.00 4.17
2487 5777 5.873179 TCGGTTAATCAATCCACAGTTTC 57.127 39.130 0.00 0.00 0.00 2.78
2489 5779 6.703319 TCGGTTAATCAATCCACAGTTTCTA 58.297 36.000 0.00 0.00 0.00 2.10
2534 5824 9.840427 ATCTTTTACACCGTAATCTCAATTTTG 57.160 29.630 0.00 0.00 0.00 2.44
2581 5871 9.945904 GATTAGAAAAATATGTACTCCCTAGGG 57.054 37.037 23.22 23.22 0.00 3.53
2582 5872 9.684702 ATTAGAAAAATATGTACTCCCTAGGGA 57.315 33.333 29.25 29.25 42.90 4.20
2666 5959 8.942338 ATTCAAACTTAATCTATAGTGCACGA 57.058 30.769 12.01 6.67 0.00 4.35
2667 5960 7.751047 TCAAACTTAATCTATAGTGCACGAC 57.249 36.000 12.01 0.00 0.00 4.34
2680 5977 0.884704 GCACGACCTGCTTTCCTTCA 60.885 55.000 0.00 0.00 43.33 3.02
2695 5992 4.665833 TCCTTCATATCGTCGGTGATTT 57.334 40.909 0.00 0.00 0.00 2.17
2815 6117 8.914654 CAAAATGTTTTCATCTTATTTCGAGCA 58.085 29.630 0.00 0.00 39.94 4.26
2890 6198 3.487376 CGTGTTTTCATTGTGTGAGCACT 60.487 43.478 1.99 0.00 45.44 4.40
2942 6250 3.304391 GCCATGTGAAACTAAAAGACGCA 60.304 43.478 0.00 0.00 38.04 5.24
2943 6251 4.615912 GCCATGTGAAACTAAAAGACGCAT 60.616 41.667 0.00 0.00 38.04 4.73
2977 6285 5.338871 GGTCTTGAGTCATGGTTATTGGGTA 60.339 44.000 6.21 0.00 0.00 3.69
3000 6308 9.797556 GGTAAAGAGTGTGTGTTATTTTCTTTT 57.202 29.630 2.42 0.00 35.65 2.27
3010 6318 6.035112 TGTGTTATTTTCTTTTCCGTTGCAAC 59.965 34.615 19.89 19.89 0.00 4.17
3024 6332 2.584967 GCAACGCACGGGCTTTTTG 61.585 57.895 8.62 9.66 38.10 2.44
3025 6333 2.279186 AACGCACGGGCTTTTTGC 60.279 55.556 8.62 0.00 41.94 3.68
3026 6334 2.781158 AACGCACGGGCTTTTTGCT 61.781 52.632 8.62 0.00 42.39 3.91
3027 6335 1.448922 AACGCACGGGCTTTTTGCTA 61.449 50.000 8.62 0.00 42.39 3.49
3028 6336 1.154225 CGCACGGGCTTTTTGCTAG 60.154 57.895 8.62 0.00 42.39 3.42
3029 6337 1.852067 CGCACGGGCTTTTTGCTAGT 61.852 55.000 8.62 0.00 42.39 2.57
3033 6341 3.366985 GCACGGGCTTTTTGCTAGTTATT 60.367 43.478 0.00 0.00 42.39 1.40
3035 6343 5.620429 GCACGGGCTTTTTGCTAGTTATTAA 60.620 40.000 0.00 0.00 42.39 1.40
3039 6347 8.909923 ACGGGCTTTTTGCTAGTTATTAATAAT 58.090 29.630 11.00 3.91 42.39 1.28
3049 6357 8.717821 TGCTAGTTATTAATAATAAAGCAGCGG 58.282 33.333 23.91 5.85 40.00 5.52
3050 6358 8.718734 GCTAGTTATTAATAATAAAGCAGCGGT 58.281 33.333 22.00 0.00 37.25 5.68
3053 6361 8.899771 AGTTATTAATAATAAAGCAGCGGTTGT 58.100 29.630 11.00 0.00 35.29 3.32
3054 6362 9.511144 GTTATTAATAATAAAGCAGCGGTTGTT 57.489 29.630 11.00 0.00 35.29 2.83
3056 6364 8.628882 ATTAATAATAAAGCAGCGGTTGTTTC 57.371 30.769 0.00 0.00 29.15 2.78
3057 6365 5.897377 ATAATAAAGCAGCGGTTGTTTCT 57.103 34.783 0.00 0.00 29.15 2.52
3058 6366 3.559238 ATAAAGCAGCGGTTGTTTCTG 57.441 42.857 0.00 0.00 29.15 3.02
3059 6367 0.385390 AAAGCAGCGGTTGTTTCTGG 59.615 50.000 0.00 0.00 29.15 3.86
3060 6368 0.751643 AAGCAGCGGTTGTTTCTGGT 60.752 50.000 0.00 0.00 39.87 4.00
3061 6369 0.751643 AGCAGCGGTTGTTTCTGGTT 60.752 50.000 0.00 0.00 35.31 3.67
3062 6370 0.594796 GCAGCGGTTGTTTCTGGTTG 60.595 55.000 0.00 0.00 0.00 3.77
3063 6371 0.738389 CAGCGGTTGTTTCTGGTTGT 59.262 50.000 0.00 0.00 0.00 3.32
3064 6372 1.021968 AGCGGTTGTTTCTGGTTGTC 58.978 50.000 0.00 0.00 0.00 3.18
3065 6373 0.030235 GCGGTTGTTTCTGGTTGTCC 59.970 55.000 0.00 0.00 0.00 4.02
3066 6374 0.306533 CGGTTGTTTCTGGTTGTCCG 59.693 55.000 0.00 0.00 36.30 4.79
3067 6375 0.030235 GGTTGTTTCTGGTTGTCCGC 59.970 55.000 0.00 0.00 36.30 5.54
3068 6376 0.030235 GTTGTTTCTGGTTGTCCGCC 59.970 55.000 0.00 0.00 36.30 6.13
3069 6377 1.440938 TTGTTTCTGGTTGTCCGCCG 61.441 55.000 0.00 0.00 36.30 6.46
3070 6378 1.890510 GTTTCTGGTTGTCCGCCGT 60.891 57.895 0.00 0.00 36.30 5.68
3071 6379 0.600782 GTTTCTGGTTGTCCGCCGTA 60.601 55.000 0.00 0.00 36.30 4.02
3072 6380 0.322322 TTTCTGGTTGTCCGCCGTAT 59.678 50.000 0.00 0.00 36.30 3.06
3073 6381 0.108520 TTCTGGTTGTCCGCCGTATC 60.109 55.000 0.00 0.00 36.30 2.24
3074 6382 0.968901 TCTGGTTGTCCGCCGTATCT 60.969 55.000 0.00 0.00 36.30 1.98
3075 6383 0.108329 CTGGTTGTCCGCCGTATCTT 60.108 55.000 0.00 0.00 36.30 2.40
3076 6384 0.322322 TGGTTGTCCGCCGTATCTTT 59.678 50.000 0.00 0.00 36.30 2.52
3077 6385 1.270947 TGGTTGTCCGCCGTATCTTTT 60.271 47.619 0.00 0.00 36.30 2.27
3078 6386 1.808343 GGTTGTCCGCCGTATCTTTTT 59.192 47.619 0.00 0.00 0.00 1.94
3079 6387 3.002102 GGTTGTCCGCCGTATCTTTTTA 58.998 45.455 0.00 0.00 0.00 1.52
3080 6388 3.624410 GGTTGTCCGCCGTATCTTTTTAT 59.376 43.478 0.00 0.00 0.00 1.40
3081 6389 4.810491 GGTTGTCCGCCGTATCTTTTTATA 59.190 41.667 0.00 0.00 0.00 0.98
3082 6390 5.050567 GGTTGTCCGCCGTATCTTTTTATAG 60.051 44.000 0.00 0.00 0.00 1.31
3083 6391 5.518848 TGTCCGCCGTATCTTTTTATAGA 57.481 39.130 0.00 0.00 0.00 1.98
3084 6392 5.904941 TGTCCGCCGTATCTTTTTATAGAA 58.095 37.500 0.00 0.00 0.00 2.10
3085 6393 6.339730 TGTCCGCCGTATCTTTTTATAGAAA 58.660 36.000 0.00 0.00 0.00 2.52
3086 6394 6.256321 TGTCCGCCGTATCTTTTTATAGAAAC 59.744 38.462 0.00 0.00 0.00 2.78
3087 6395 5.754890 TCCGCCGTATCTTTTTATAGAAACC 59.245 40.000 0.00 0.00 0.00 3.27
3088 6396 5.049886 CCGCCGTATCTTTTTATAGAAACCC 60.050 44.000 0.00 0.00 0.00 4.11
3089 6397 5.049886 CGCCGTATCTTTTTATAGAAACCCC 60.050 44.000 0.00 0.00 0.00 4.95
3090 6398 5.240183 GCCGTATCTTTTTATAGAAACCCCC 59.760 44.000 0.00 0.00 0.00 5.40
3091 6399 6.598503 CCGTATCTTTTTATAGAAACCCCCT 58.401 40.000 0.00 0.00 0.00 4.79
3092 6400 6.485648 CCGTATCTTTTTATAGAAACCCCCTG 59.514 42.308 0.00 0.00 0.00 4.45
3093 6401 6.017357 CGTATCTTTTTATAGAAACCCCCTGC 60.017 42.308 0.00 0.00 0.00 4.85
3094 6402 4.606210 TCTTTTTATAGAAACCCCCTGCC 58.394 43.478 0.00 0.00 0.00 4.85
3095 6403 4.293901 TCTTTTTATAGAAACCCCCTGCCT 59.706 41.667 0.00 0.00 0.00 4.75
3096 6404 4.685513 TTTTATAGAAACCCCCTGCCTT 57.314 40.909 0.00 0.00 0.00 4.35
3097 6405 4.685513 TTTATAGAAACCCCCTGCCTTT 57.314 40.909 0.00 0.00 0.00 3.11
3098 6406 4.685513 TTATAGAAACCCCCTGCCTTTT 57.314 40.909 0.00 0.00 0.00 2.27
3099 6407 2.597578 TAGAAACCCCCTGCCTTTTC 57.402 50.000 0.00 0.00 0.00 2.29
3100 6408 0.860457 AGAAACCCCCTGCCTTTTCT 59.140 50.000 0.00 0.00 34.23 2.52
3101 6409 0.969149 GAAACCCCCTGCCTTTTCTG 59.031 55.000 0.00 0.00 0.00 3.02
3102 6410 0.560688 AAACCCCCTGCCTTTTCTGA 59.439 50.000 0.00 0.00 0.00 3.27
3103 6411 0.786435 AACCCCCTGCCTTTTCTGAT 59.214 50.000 0.00 0.00 0.00 2.90
3104 6412 1.681229 ACCCCCTGCCTTTTCTGATA 58.319 50.000 0.00 0.00 0.00 2.15
3105 6413 2.000048 ACCCCCTGCCTTTTCTGATAA 59.000 47.619 0.00 0.00 0.00 1.75
3106 6414 2.587307 ACCCCCTGCCTTTTCTGATAAT 59.413 45.455 0.00 0.00 0.00 1.28
3107 6415 3.012844 ACCCCCTGCCTTTTCTGATAATT 59.987 43.478 0.00 0.00 0.00 1.40
3108 6416 4.231890 ACCCCCTGCCTTTTCTGATAATTA 59.768 41.667 0.00 0.00 0.00 1.40
3109 6417 5.208121 CCCCCTGCCTTTTCTGATAATTAA 58.792 41.667 0.00 0.00 0.00 1.40
3110 6418 5.069119 CCCCCTGCCTTTTCTGATAATTAAC 59.931 44.000 0.00 0.00 0.00 2.01
3111 6419 5.069119 CCCCTGCCTTTTCTGATAATTAACC 59.931 44.000 0.00 0.00 0.00 2.85
3112 6420 5.069119 CCCTGCCTTTTCTGATAATTAACCC 59.931 44.000 0.00 0.00 0.00 4.11
3113 6421 5.221048 CCTGCCTTTTCTGATAATTAACCCG 60.221 44.000 0.00 0.00 0.00 5.28
3114 6422 4.097286 TGCCTTTTCTGATAATTAACCCGC 59.903 41.667 0.00 0.00 0.00 6.13
3115 6423 4.788521 GCCTTTTCTGATAATTAACCCGCG 60.789 45.833 0.00 0.00 0.00 6.46
3116 6424 4.261031 CCTTTTCTGATAATTAACCCGCGG 60.261 45.833 21.04 21.04 0.00 6.46
3117 6425 3.547054 TTCTGATAATTAACCCGCGGT 57.453 42.857 26.12 9.29 37.65 5.68
3119 6427 3.460103 TCTGATAATTAACCCGCGGTTC 58.540 45.455 26.12 7.87 43.05 3.62
3120 6428 3.118702 TCTGATAATTAACCCGCGGTTCA 60.119 43.478 26.12 10.40 43.05 3.18
3121 6429 2.937799 TGATAATTAACCCGCGGTTCAC 59.062 45.455 26.12 9.22 43.05 3.18
3122 6430 2.469274 TAATTAACCCGCGGTTCACA 57.531 45.000 26.12 3.84 43.05 3.58
3123 6431 1.828979 AATTAACCCGCGGTTCACAT 58.171 45.000 26.12 6.32 43.05 3.21
3124 6432 1.828979 ATTAACCCGCGGTTCACATT 58.171 45.000 26.12 10.47 43.05 2.71
3125 6433 1.606903 TTAACCCGCGGTTCACATTT 58.393 45.000 26.12 7.51 43.05 2.32
3126 6434 1.606903 TAACCCGCGGTTCACATTTT 58.393 45.000 26.12 6.11 43.05 1.82
3127 6435 1.606903 AACCCGCGGTTCACATTTTA 58.393 45.000 26.12 0.00 43.05 1.52
3128 6436 1.161843 ACCCGCGGTTCACATTTTAG 58.838 50.000 26.12 6.21 27.29 1.85
3129 6437 1.161843 CCCGCGGTTCACATTTTAGT 58.838 50.000 26.12 0.00 0.00 2.24
3130 6438 1.538075 CCCGCGGTTCACATTTTAGTT 59.462 47.619 26.12 0.00 0.00 2.24
3131 6439 2.743126 CCCGCGGTTCACATTTTAGTTA 59.257 45.455 26.12 0.00 0.00 2.24
3132 6440 3.181514 CCCGCGGTTCACATTTTAGTTAG 60.182 47.826 26.12 0.00 0.00 2.34
3133 6441 3.680937 CCGCGGTTCACATTTTAGTTAGA 59.319 43.478 19.50 0.00 0.00 2.10
3134 6442 4.152759 CCGCGGTTCACATTTTAGTTAGAA 59.847 41.667 19.50 0.00 0.00 2.10
3135 6443 5.077424 CGCGGTTCACATTTTAGTTAGAAC 58.923 41.667 0.00 0.00 35.77 3.01
3136 6444 5.077424 GCGGTTCACATTTTAGTTAGAACG 58.923 41.667 0.00 0.00 36.98 3.95
3137 6445 5.107375 GCGGTTCACATTTTAGTTAGAACGA 60.107 40.000 0.00 0.00 36.98 3.85
3138 6446 6.564499 GCGGTTCACATTTTAGTTAGAACGAA 60.564 38.462 0.00 0.00 36.98 3.85
3139 6447 6.788930 CGGTTCACATTTTAGTTAGAACGAAC 59.211 38.462 0.00 0.00 36.98 3.95
3140 6448 7.073883 GGTTCACATTTTAGTTAGAACGAACC 58.926 38.462 0.00 0.00 41.15 3.62
3141 6449 6.456447 TCACATTTTAGTTAGAACGAACCG 57.544 37.500 0.00 0.00 0.00 4.44
3142 6450 5.984926 TCACATTTTAGTTAGAACGAACCGT 59.015 36.000 0.00 0.00 43.97 4.83
3158 6466 7.071014 ACGAACCGTTTTCTTTAAGTTTACA 57.929 32.000 0.00 0.00 36.35 2.41
3159 6467 7.696755 ACGAACCGTTTTCTTTAAGTTTACAT 58.303 30.769 0.00 0.00 36.35 2.29
3160 6468 8.825745 ACGAACCGTTTTCTTTAAGTTTACATA 58.174 29.630 0.00 0.00 36.35 2.29
3161 6469 9.649024 CGAACCGTTTTCTTTAAGTTTACATAA 57.351 29.630 0.00 0.00 0.00 1.90
3180 6488 6.649155 ACATAAAACCCCTTGGATTTTATGC 58.351 36.000 23.57 0.00 45.35 3.14
3181 6489 6.443527 ACATAAAACCCCTTGGATTTTATGCT 59.556 34.615 23.57 13.36 45.35 3.79
3182 6490 7.621683 ACATAAAACCCCTTGGATTTTATGCTA 59.378 33.333 23.57 0.00 45.35 3.49
3183 6491 6.943899 AAAACCCCTTGGATTTTATGCTAA 57.056 33.333 0.00 0.00 33.17 3.09
3184 6492 7.509236 AAAACCCCTTGGATTTTATGCTAAT 57.491 32.000 0.00 0.00 33.17 1.73
3185 6493 7.509236 AAACCCCTTGGATTTTATGCTAATT 57.491 32.000 0.00 0.00 34.81 1.40
3186 6494 8.616799 AAACCCCTTGGATTTTATGCTAATTA 57.383 30.769 0.00 0.00 34.81 1.40
3187 6495 8.616799 AACCCCTTGGATTTTATGCTAATTAA 57.383 30.769 0.00 0.00 34.81 1.40
3188 6496 8.018537 ACCCCTTGGATTTTATGCTAATTAAC 57.981 34.615 0.00 0.00 34.81 2.01
3189 6497 7.070696 ACCCCTTGGATTTTATGCTAATTAACC 59.929 37.037 0.00 0.00 34.81 2.85
3190 6498 7.441836 CCCTTGGATTTTATGCTAATTAACCC 58.558 38.462 0.00 0.00 0.00 4.11
3191 6499 7.145323 CCTTGGATTTTATGCTAATTAACCCG 58.855 38.462 0.00 0.00 0.00 5.28
3192 6500 6.079424 TGGATTTTATGCTAATTAACCCGC 57.921 37.500 0.00 0.00 0.00 6.13
3193 6501 5.151389 GGATTTTATGCTAATTAACCCGCG 58.849 41.667 0.00 0.00 0.00 6.46
3194 6502 4.555348 TTTTATGCTAATTAACCCGCGG 57.445 40.909 21.04 21.04 0.00 6.46
3195 6503 2.914695 TATGCTAATTAACCCGCGGT 57.085 45.000 26.12 9.29 37.65 5.68
3196 6504 1.589803 ATGCTAATTAACCCGCGGTC 58.410 50.000 26.12 1.79 33.12 4.79
3197 6505 0.538118 TGCTAATTAACCCGCGGTCT 59.462 50.000 26.12 13.19 33.12 3.85
3198 6506 1.755959 TGCTAATTAACCCGCGGTCTA 59.244 47.619 26.12 12.04 33.12 2.59
3199 6507 2.223876 TGCTAATTAACCCGCGGTCTAG 60.224 50.000 26.12 11.36 33.12 2.43
3200 6508 2.035066 GCTAATTAACCCGCGGTCTAGA 59.965 50.000 26.12 6.14 33.12 2.43
3201 6509 3.305881 GCTAATTAACCCGCGGTCTAGAT 60.306 47.826 26.12 8.40 33.12 1.98
3202 6510 3.832615 AATTAACCCGCGGTCTAGATT 57.167 42.857 26.12 13.99 33.12 2.40
3203 6511 3.832615 ATTAACCCGCGGTCTAGATTT 57.167 42.857 26.12 7.51 33.12 2.17
3204 6512 4.942761 ATTAACCCGCGGTCTAGATTTA 57.057 40.909 26.12 6.54 33.12 1.40
3205 6513 4.734398 TTAACCCGCGGTCTAGATTTAA 57.266 40.909 26.12 11.88 33.12 1.52
3206 6514 2.884894 ACCCGCGGTCTAGATTTAAG 57.115 50.000 26.12 6.21 0.00 1.85
3207 6515 2.105766 ACCCGCGGTCTAGATTTAAGT 58.894 47.619 26.12 6.94 0.00 2.24
3208 6516 2.159142 ACCCGCGGTCTAGATTTAAGTG 60.159 50.000 26.12 5.50 0.00 3.16
3209 6517 2.470821 CCGCGGTCTAGATTTAAGTGG 58.529 52.381 19.50 0.00 0.00 4.00
3210 6518 1.859080 CGCGGTCTAGATTTAAGTGGC 59.141 52.381 0.00 0.00 0.00 5.01
3211 6519 2.737359 CGCGGTCTAGATTTAAGTGGCA 60.737 50.000 0.00 0.00 0.00 4.92
3212 6520 2.866762 GCGGTCTAGATTTAAGTGGCAG 59.133 50.000 0.00 0.00 0.00 4.85
3213 6521 2.866762 CGGTCTAGATTTAAGTGGCAGC 59.133 50.000 0.00 0.00 0.00 5.25
3214 6522 2.866762 GGTCTAGATTTAAGTGGCAGCG 59.133 50.000 0.00 0.00 0.00 5.18
3215 6523 3.430374 GGTCTAGATTTAAGTGGCAGCGA 60.430 47.826 0.00 0.00 0.00 4.93
3216 6524 4.181578 GTCTAGATTTAAGTGGCAGCGAA 58.818 43.478 0.00 0.00 0.00 4.70
3217 6525 4.811557 GTCTAGATTTAAGTGGCAGCGAAT 59.188 41.667 0.00 0.00 0.00 3.34
3218 6526 5.050490 TCTAGATTTAAGTGGCAGCGAATC 58.950 41.667 0.00 0.00 0.00 2.52
3219 6527 3.609853 AGATTTAAGTGGCAGCGAATCA 58.390 40.909 12.42 0.00 0.00 2.57
3220 6528 4.202441 AGATTTAAGTGGCAGCGAATCAT 58.798 39.130 12.42 0.57 0.00 2.45
3221 6529 5.368145 AGATTTAAGTGGCAGCGAATCATA 58.632 37.500 12.42 0.00 0.00 2.15
3222 6530 6.000219 AGATTTAAGTGGCAGCGAATCATAT 59.000 36.000 12.42 0.00 0.00 1.78
3223 6531 7.161404 AGATTTAAGTGGCAGCGAATCATATA 58.839 34.615 12.42 0.00 0.00 0.86
3224 6532 7.826252 AGATTTAAGTGGCAGCGAATCATATAT 59.174 33.333 12.42 0.00 0.00 0.86
3225 6533 9.098355 GATTTAAGTGGCAGCGAATCATATATA 57.902 33.333 0.00 0.00 0.00 0.86
3226 6534 9.618890 ATTTAAGTGGCAGCGAATCATATATAT 57.381 29.630 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.237949 GTCGATCTGAAGGATAAAATATCTCGA 58.762 37.037 0.00 0.00 34.33 4.04
9 10 8.023706 TGTCGATCTGAAGGATAAAATATCTCG 58.976 37.037 0.00 0.00 34.33 4.04
43 44 5.339477 ACAACCTTGTAGGGTAGTGATACT 58.661 41.667 0.00 0.00 40.58 2.12
44 45 5.672421 ACAACCTTGTAGGGTAGTGATAC 57.328 43.478 0.00 0.00 40.58 2.24
45 46 7.229306 CGTATACAACCTTGTAGGGTAGTGATA 59.771 40.741 3.32 0.00 45.80 2.15
46 47 6.040166 CGTATACAACCTTGTAGGGTAGTGAT 59.960 42.308 3.32 0.00 45.80 3.06
47 48 5.357878 CGTATACAACCTTGTAGGGTAGTGA 59.642 44.000 3.32 0.00 45.80 3.41
69 70 4.817464 TGTTTGCTTACTTGGAATGTACGT 59.183 37.500 0.00 0.00 0.00 3.57
70 71 5.351233 TGTTTGCTTACTTGGAATGTACG 57.649 39.130 0.00 0.00 0.00 3.67
71 72 6.586082 CCATTGTTTGCTTACTTGGAATGTAC 59.414 38.462 0.00 0.00 0.00 2.90
136 137 2.250237 GGCTAGCAATGGAGCGCTC 61.250 63.158 29.38 29.38 39.72 5.03
223 225 1.299648 CAGCGGAATTCACCCTGGA 59.700 57.895 7.93 0.00 0.00 3.86
257 261 6.374613 TCTTTAGAGATTGCGAACAGAGTAGA 59.625 38.462 0.00 0.00 0.00 2.59
269 273 4.808364 AGCTCGAACATCTTTAGAGATTGC 59.192 41.667 0.00 0.00 40.67 3.56
270 274 6.900568 AAGCTCGAACATCTTTAGAGATTG 57.099 37.500 0.00 0.00 40.67 2.67
271 275 7.223777 GCTTAAGCTCGAACATCTTTAGAGATT 59.776 37.037 20.38 3.69 40.15 2.40
272 276 6.699642 GCTTAAGCTCGAACATCTTTAGAGAT 59.300 38.462 20.38 0.00 39.52 2.75
273 277 6.037098 GCTTAAGCTCGAACATCTTTAGAGA 58.963 40.000 20.38 0.00 38.21 3.10
274 278 6.267500 GCTTAAGCTCGAACATCTTTAGAG 57.733 41.667 20.38 0.00 38.21 2.43
364 383 1.462616 CCATGTTCCCGCAAAGATGA 58.537 50.000 6.68 0.00 33.04 2.92
393 3562 5.638596 AACGTTTGAGGGGCTAAATTTAG 57.361 39.130 19.08 19.08 0.00 1.85
413 3604 8.213518 ACAGACACATATTCATGTCCATAAAC 57.786 34.615 7.57 0.00 43.73 2.01
418 3609 6.489700 ACAAAACAGACACATATTCATGTCCA 59.510 34.615 7.57 0.00 43.73 4.02
419 3610 6.803320 CACAAAACAGACACATATTCATGTCC 59.197 38.462 7.57 0.00 43.73 4.02
427 3618 8.579850 AATATGGACACAAAACAGACACATAT 57.420 30.769 0.00 0.00 32.24 1.78
437 3628 5.342259 GCGTGAAGAAATATGGACACAAAAC 59.658 40.000 0.00 0.00 0.00 2.43
448 3639 1.062587 GCTGCGTGCGTGAAGAAATAT 59.937 47.619 0.00 0.00 0.00 1.28
502 3694 6.019237 GCGGACTATAATCACATGCATATGAG 60.019 42.308 13.94 1.79 37.73 2.90
563 3755 4.082026 GGCAACATAAGAAGTGCTTGGATT 60.082 41.667 0.00 0.00 37.42 3.01
568 3760 3.754965 TGAGGCAACATAAGAAGTGCTT 58.245 40.909 0.00 0.00 39.04 3.91
617 3811 3.133901 TCAAGCACTCCTCACACTTAACA 59.866 43.478 0.00 0.00 0.00 2.41
637 3831 6.255020 GCCTTTTCTATTCGTTTCGACTATCA 59.745 38.462 0.00 0.00 34.89 2.15
640 3834 5.575606 CAGCCTTTTCTATTCGTTTCGACTA 59.424 40.000 0.00 0.00 34.89 2.59
643 3837 4.562082 TCAGCCTTTTCTATTCGTTTCGA 58.438 39.130 0.00 0.00 0.00 3.71
650 3844 4.447290 GGACTCCTCAGCCTTTTCTATTC 58.553 47.826 0.00 0.00 0.00 1.75
651 3845 3.118592 CGGACTCCTCAGCCTTTTCTATT 60.119 47.826 0.00 0.00 0.00 1.73
661 3855 0.755686 ATCCAATCGGACTCCTCAGC 59.244 55.000 0.00 0.00 46.79 4.26
662 3856 2.034878 TGATCCAATCGGACTCCTCAG 58.965 52.381 0.00 0.00 46.79 3.35
685 3880 2.035832 CCAAATTGATCGGGGCATAACC 59.964 50.000 0.00 0.00 37.93 2.85
686 3881 2.955660 TCCAAATTGATCGGGGCATAAC 59.044 45.455 0.00 0.00 0.00 1.89
689 3884 2.157640 TTCCAAATTGATCGGGGCAT 57.842 45.000 0.00 0.00 0.00 4.40
691 3886 2.695147 AGATTTCCAAATTGATCGGGGC 59.305 45.455 0.00 0.00 0.00 5.80
695 3932 5.496387 CGACTGAGATTTCCAAATTGATCG 58.504 41.667 0.00 0.00 0.00 3.69
719 3994 2.365617 TGAGACTCCGATAATTCCCAGC 59.634 50.000 0.00 0.00 0.00 4.85
723 3998 4.768130 TCGATGAGACTCCGATAATTCC 57.232 45.455 0.00 0.00 0.00 3.01
726 4001 5.713792 AACATCGATGAGACTCCGATAAT 57.286 39.130 31.33 1.24 40.54 1.28
730 4005 3.883489 ACATAACATCGATGAGACTCCGA 59.117 43.478 31.33 6.33 36.72 4.55
751 4026 4.242475 TGTCCATGTAAGATCACACGAAC 58.758 43.478 0.00 0.00 0.00 3.95
867 4143 9.305925 GCAGAGTATTTTATTAGCAAAAATGCT 57.694 29.630 8.53 8.53 45.72 3.79
868 4144 8.542953 GGCAGAGTATTTTATTAGCAAAAATGC 58.457 33.333 4.49 3.43 38.45 3.56
869 4145 9.807649 AGGCAGAGTATTTTATTAGCAAAAATG 57.192 29.630 4.49 0.00 37.19 2.32
873 4149 9.855021 GAAAAGGCAGAGTATTTTATTAGCAAA 57.145 29.630 0.00 0.00 0.00 3.68
874 4150 8.466798 GGAAAAGGCAGAGTATTTTATTAGCAA 58.533 33.333 0.00 0.00 0.00 3.91
875 4151 7.068226 GGGAAAAGGCAGAGTATTTTATTAGCA 59.932 37.037 0.00 0.00 0.00 3.49
876 4152 7.285629 AGGGAAAAGGCAGAGTATTTTATTAGC 59.714 37.037 0.00 0.00 0.00 3.09
877 4153 8.753497 AGGGAAAAGGCAGAGTATTTTATTAG 57.247 34.615 0.00 0.00 0.00 1.73
878 4154 7.497909 CGAGGGAAAAGGCAGAGTATTTTATTA 59.502 37.037 0.00 0.00 0.00 0.98
879 4155 6.318900 CGAGGGAAAAGGCAGAGTATTTTATT 59.681 38.462 0.00 0.00 0.00 1.40
979 4261 4.632458 GATCTCCTCCCGCGACGC 62.632 72.222 8.23 10.49 0.00 5.19
980 4262 4.315122 CGATCTCCTCCCGCGACG 62.315 72.222 8.23 0.00 0.00 5.12
1901 5189 2.975799 TCGCCGCCTTGTTTGGTC 60.976 61.111 0.00 0.00 0.00 4.02
1902 5190 3.284449 GTCGCCGCCTTGTTTGGT 61.284 61.111 0.00 0.00 0.00 3.67
1937 5225 2.107141 GGGGATCTTGGCTCGACG 59.893 66.667 0.00 0.00 0.00 5.12
1991 5279 3.315521 CGCAATCCTCGTCGCTCG 61.316 66.667 0.00 0.00 41.41 5.03
2013 5301 4.569023 CTATCGCGGCGCCAGTCA 62.569 66.667 28.98 7.08 0.00 3.41
2035 5323 1.037579 TGCTCGGGTGTCATCTCGAT 61.038 55.000 0.00 0.00 0.00 3.59
2058 5346 2.105128 GGCCTGTCGACGATCTGG 59.895 66.667 11.62 9.51 0.00 3.86
2154 5442 1.895707 CTCCATGGCGCCATTCTCC 60.896 63.158 38.86 4.65 33.90 3.71
2157 5445 1.895707 CTCCTCCATGGCGCCATTC 60.896 63.158 38.86 6.85 33.90 2.67
2159 5447 3.882326 CCTCCTCCATGGCGCCAT 61.882 66.667 36.10 36.10 37.08 4.40
2202 5490 0.806102 CCATGGCGGTCTTGTAGTCG 60.806 60.000 0.00 0.00 0.00 4.18
2288 5576 5.084818 TGAGATAGAAATGTTCGCTCCAA 57.915 39.130 0.00 0.00 34.02 3.53
2292 5580 4.302455 CCGATGAGATAGAAATGTTCGCT 58.698 43.478 0.00 0.00 34.02 4.93
2297 5585 3.735237 ACGCCGATGAGATAGAAATGT 57.265 42.857 0.00 0.00 0.00 2.71
2305 5593 1.806623 GCCAGTTTACGCCGATGAGAT 60.807 52.381 0.00 0.00 0.00 2.75
2320 5608 1.563924 TAATACACAGGTCGGCCAGT 58.436 50.000 9.71 2.31 37.19 4.00
2341 5631 6.623743 GCGATCTTGAACATAATTAACACGAC 59.376 38.462 0.00 0.00 0.00 4.34
2359 5649 2.484264 GCACAAAGGTAGTTGCGATCTT 59.516 45.455 0.00 0.00 31.29 2.40
2370 5660 0.600782 GTTCCGGTCGCACAAAGGTA 60.601 55.000 0.00 0.00 0.00 3.08
2381 5671 2.424246 TGTTGAGGTTTTTGTTCCGGTC 59.576 45.455 0.00 0.00 0.00 4.79
2393 5683 7.331791 GGAGTACAGAAATAGATGTTGAGGTT 58.668 38.462 0.00 0.00 0.00 3.50
2394 5684 6.127026 GGGAGTACAGAAATAGATGTTGAGGT 60.127 42.308 0.00 0.00 0.00 3.85
2516 5806 6.611381 ACATGTCAAAATTGAGATTACGGTG 58.389 36.000 3.28 0.00 38.92 4.94
2573 5863 8.912285 TCATATTTAGATTCTACTCCCTAGGGA 58.088 37.037 29.25 29.25 42.90 4.20
2574 5864 9.722317 ATCATATTTAGATTCTACTCCCTAGGG 57.278 37.037 23.22 23.22 0.00 3.53
2643 5936 6.755141 GGTCGTGCACTATAGATTAAGTTTGA 59.245 38.462 16.19 0.00 0.00 2.69
2666 5959 3.738281 CGACGATATGAAGGAAAGCAGGT 60.738 47.826 0.00 0.00 0.00 4.00
2667 5960 2.797156 CGACGATATGAAGGAAAGCAGG 59.203 50.000 0.00 0.00 0.00 4.85
2671 5967 4.041740 TCACCGACGATATGAAGGAAAG 57.958 45.455 0.00 0.00 0.00 2.62
2675 5971 4.368315 TCAAATCACCGACGATATGAAGG 58.632 43.478 0.00 0.00 0.00 3.46
2676 5972 5.966636 TTCAAATCACCGACGATATGAAG 57.033 39.130 0.00 0.00 0.00 3.02
2680 5977 4.574421 TGCAATTCAAATCACCGACGATAT 59.426 37.500 0.00 0.00 0.00 1.63
2742 6040 1.026182 GTGCATGCATGGTTCTCGGA 61.026 55.000 25.64 0.00 0.00 4.55
2789 6088 8.914654 TGCTCGAAATAAGATGAAAACATTTTG 58.085 29.630 0.00 0.00 0.00 2.44
2790 6089 9.474920 TTGCTCGAAATAAGATGAAAACATTTT 57.525 25.926 0.00 0.00 0.00 1.82
2793 6092 7.752239 CACTTGCTCGAAATAAGATGAAAACAT 59.248 33.333 9.22 0.00 0.00 2.71
2794 6093 7.077605 CACTTGCTCGAAATAAGATGAAAACA 58.922 34.615 9.22 0.00 0.00 2.83
2795 6094 7.059945 CACACTTGCTCGAAATAAGATGAAAAC 59.940 37.037 9.22 0.00 0.00 2.43
2837 6145 3.076182 TGGTCAGTCCTAAGGTCTCTCTT 59.924 47.826 0.00 0.00 37.07 2.85
2890 6198 1.069090 GTTGCCGACAGTGACCTCA 59.931 57.895 0.00 0.00 0.00 3.86
2942 6250 5.957771 TGACTCAAGACCTTAATAGGCAT 57.042 39.130 0.00 0.00 46.22 4.40
2943 6251 5.396772 CCATGACTCAAGACCTTAATAGGCA 60.397 44.000 0.00 0.00 46.22 4.75
2977 6285 7.700656 CGGAAAAGAAAATAACACACACTCTTT 59.299 33.333 0.00 0.00 34.09 2.52
3024 6332 8.718734 ACCGCTGCTTTATTATTAATAACTAGC 58.281 33.333 20.47 20.47 37.56 3.42
3027 6335 8.899771 ACAACCGCTGCTTTATTATTAATAACT 58.100 29.630 10.07 3.39 33.32 2.24
3028 6336 9.511144 AACAACCGCTGCTTTATTATTAATAAC 57.489 29.630 10.07 0.00 33.32 1.89
3033 6341 7.247728 CAGAAACAACCGCTGCTTTATTATTA 58.752 34.615 0.00 0.00 0.00 0.98
3035 6343 5.393027 CCAGAAACAACCGCTGCTTTATTAT 60.393 40.000 0.00 0.00 0.00 1.28
3039 6347 1.606668 CCAGAAACAACCGCTGCTTTA 59.393 47.619 0.00 0.00 0.00 1.85
3041 6349 0.751643 ACCAGAAACAACCGCTGCTT 60.752 50.000 0.00 0.00 0.00 3.91
3043 6351 0.594796 CAACCAGAAACAACCGCTGC 60.595 55.000 0.00 0.00 0.00 5.25
3044 6352 0.738389 ACAACCAGAAACAACCGCTG 59.262 50.000 0.00 0.00 0.00 5.18
3045 6353 1.021968 GACAACCAGAAACAACCGCT 58.978 50.000 0.00 0.00 0.00 5.52
3046 6354 0.030235 GGACAACCAGAAACAACCGC 59.970 55.000 0.00 0.00 35.97 5.68
3047 6355 0.306533 CGGACAACCAGAAACAACCG 59.693 55.000 0.00 0.00 35.59 4.44
3048 6356 0.030235 GCGGACAACCAGAAACAACC 59.970 55.000 0.00 0.00 35.59 3.77
3049 6357 0.030235 GGCGGACAACCAGAAACAAC 59.970 55.000 0.00 0.00 35.59 3.32
3050 6358 1.440938 CGGCGGACAACCAGAAACAA 61.441 55.000 0.00 0.00 35.59 2.83
3051 6359 1.890041 CGGCGGACAACCAGAAACA 60.890 57.895 0.00 0.00 35.59 2.83
3052 6360 0.600782 TACGGCGGACAACCAGAAAC 60.601 55.000 13.24 0.00 35.59 2.78
3053 6361 0.322322 ATACGGCGGACAACCAGAAA 59.678 50.000 13.24 0.00 35.59 2.52
3054 6362 0.108520 GATACGGCGGACAACCAGAA 60.109 55.000 13.24 0.00 35.59 3.02
3055 6363 0.968901 AGATACGGCGGACAACCAGA 60.969 55.000 13.24 0.00 35.59 3.86
3056 6364 0.108329 AAGATACGGCGGACAACCAG 60.108 55.000 13.24 0.00 35.59 4.00
3057 6365 0.322322 AAAGATACGGCGGACAACCA 59.678 50.000 13.24 0.00 35.59 3.67
3058 6366 1.445871 AAAAGATACGGCGGACAACC 58.554 50.000 13.24 0.00 0.00 3.77
3059 6367 4.870221 ATAAAAAGATACGGCGGACAAC 57.130 40.909 13.24 0.00 0.00 3.32
3060 6368 5.904941 TCTATAAAAAGATACGGCGGACAA 58.095 37.500 13.24 0.00 0.00 3.18
3061 6369 5.518848 TCTATAAAAAGATACGGCGGACA 57.481 39.130 13.24 0.00 0.00 4.02
3062 6370 6.292542 GGTTTCTATAAAAAGATACGGCGGAC 60.293 42.308 13.24 1.57 30.73 4.79
3063 6371 5.754890 GGTTTCTATAAAAAGATACGGCGGA 59.245 40.000 13.24 1.23 30.73 5.54
3064 6372 5.049886 GGGTTTCTATAAAAAGATACGGCGG 60.050 44.000 13.24 0.00 30.73 6.13
3065 6373 5.049886 GGGGTTTCTATAAAAAGATACGGCG 60.050 44.000 4.80 4.80 30.73 6.46
3066 6374 5.240183 GGGGGTTTCTATAAAAAGATACGGC 59.760 44.000 0.00 0.00 30.73 5.68
3067 6375 6.485648 CAGGGGGTTTCTATAAAAAGATACGG 59.514 42.308 0.00 0.00 30.73 4.02
3068 6376 6.017357 GCAGGGGGTTTCTATAAAAAGATACG 60.017 42.308 0.00 0.00 30.73 3.06
3069 6377 6.264744 GGCAGGGGGTTTCTATAAAAAGATAC 59.735 42.308 0.00 0.00 0.00 2.24
3070 6378 6.161526 AGGCAGGGGGTTTCTATAAAAAGATA 59.838 38.462 0.00 0.00 0.00 1.98
3071 6379 5.043356 AGGCAGGGGGTTTCTATAAAAAGAT 60.043 40.000 0.00 0.00 0.00 2.40
3072 6380 4.293901 AGGCAGGGGGTTTCTATAAAAAGA 59.706 41.667 0.00 0.00 0.00 2.52
3073 6381 4.610333 AGGCAGGGGGTTTCTATAAAAAG 58.390 43.478 0.00 0.00 0.00 2.27
3074 6382 4.685513 AGGCAGGGGGTTTCTATAAAAA 57.314 40.909 0.00 0.00 0.00 1.94
3075 6383 4.685513 AAGGCAGGGGGTTTCTATAAAA 57.314 40.909 0.00 0.00 0.00 1.52
3076 6384 4.685513 AAAGGCAGGGGGTTTCTATAAA 57.314 40.909 0.00 0.00 0.00 1.40
3077 6385 4.293901 AGAAAAGGCAGGGGGTTTCTATAA 59.706 41.667 0.00 0.00 38.28 0.98
3078 6386 3.856206 AGAAAAGGCAGGGGGTTTCTATA 59.144 43.478 0.00 0.00 38.28 1.31
3079 6387 2.654896 AGAAAAGGCAGGGGGTTTCTAT 59.345 45.455 0.00 0.00 38.28 1.98
3080 6388 2.070573 AGAAAAGGCAGGGGGTTTCTA 58.929 47.619 0.00 0.00 38.28 2.10
3081 6389 0.860457 AGAAAAGGCAGGGGGTTTCT 59.140 50.000 0.00 0.00 35.89 2.52
3082 6390 0.969149 CAGAAAAGGCAGGGGGTTTC 59.031 55.000 0.00 0.00 0.00 2.78
3083 6391 0.560688 TCAGAAAAGGCAGGGGGTTT 59.439 50.000 0.00 0.00 0.00 3.27
3084 6392 0.786435 ATCAGAAAAGGCAGGGGGTT 59.214 50.000 0.00 0.00 0.00 4.11
3085 6393 1.681229 TATCAGAAAAGGCAGGGGGT 58.319 50.000 0.00 0.00 0.00 4.95
3086 6394 2.826674 TTATCAGAAAAGGCAGGGGG 57.173 50.000 0.00 0.00 0.00 5.40
3087 6395 5.069119 GGTTAATTATCAGAAAAGGCAGGGG 59.931 44.000 0.00 0.00 0.00 4.79
3088 6396 5.069119 GGGTTAATTATCAGAAAAGGCAGGG 59.931 44.000 0.00 0.00 0.00 4.45
3089 6397 5.221048 CGGGTTAATTATCAGAAAAGGCAGG 60.221 44.000 0.00 0.00 0.00 4.85
3090 6398 5.733373 GCGGGTTAATTATCAGAAAAGGCAG 60.733 44.000 0.00 0.00 0.00 4.85
3091 6399 4.097286 GCGGGTTAATTATCAGAAAAGGCA 59.903 41.667 0.00 0.00 0.00 4.75
3092 6400 4.607955 GCGGGTTAATTATCAGAAAAGGC 58.392 43.478 0.00 0.00 0.00 4.35
3093 6401 4.261031 CCGCGGGTTAATTATCAGAAAAGG 60.261 45.833 20.10 0.00 0.00 3.11
3094 6402 4.334481 ACCGCGGGTTAATTATCAGAAAAG 59.666 41.667 31.76 0.00 27.29 2.27
3095 6403 4.263435 ACCGCGGGTTAATTATCAGAAAA 58.737 39.130 31.76 0.00 27.29 2.29
3096 6404 3.876341 ACCGCGGGTTAATTATCAGAAA 58.124 40.909 31.76 0.00 27.29 2.52
3097 6405 3.547054 ACCGCGGGTTAATTATCAGAA 57.453 42.857 31.76 0.00 27.29 3.02
3098 6406 3.118702 TGAACCGCGGGTTAATTATCAGA 60.119 43.478 31.76 0.00 46.95 3.27
3099 6407 3.001939 GTGAACCGCGGGTTAATTATCAG 59.998 47.826 31.76 0.00 46.95 2.90
3100 6408 2.937799 GTGAACCGCGGGTTAATTATCA 59.062 45.455 31.76 12.82 46.95 2.15
3101 6409 2.937799 TGTGAACCGCGGGTTAATTATC 59.062 45.455 31.76 9.80 46.95 1.75
3102 6410 2.988570 TGTGAACCGCGGGTTAATTAT 58.011 42.857 31.76 1.49 46.95 1.28
3103 6411 2.469274 TGTGAACCGCGGGTTAATTA 57.531 45.000 31.76 6.93 46.95 1.40
3104 6412 1.828979 ATGTGAACCGCGGGTTAATT 58.171 45.000 31.76 14.62 46.95 1.40
3105 6413 1.828979 AATGTGAACCGCGGGTTAAT 58.171 45.000 31.76 15.23 46.95 1.40
3106 6414 1.606903 AAATGTGAACCGCGGGTTAA 58.393 45.000 31.76 13.44 46.95 2.01
3107 6415 1.606903 AAAATGTGAACCGCGGGTTA 58.393 45.000 31.76 19.13 46.95 2.85
3109 6417 1.161843 CTAAAATGTGAACCGCGGGT 58.838 50.000 31.76 27.03 37.65 5.28
3110 6418 1.161843 ACTAAAATGTGAACCGCGGG 58.838 50.000 31.76 11.88 0.00 6.13
3111 6419 2.981400 AACTAAAATGTGAACCGCGG 57.019 45.000 26.86 26.86 0.00 6.46
3112 6420 4.914312 TCTAACTAAAATGTGAACCGCG 57.086 40.909 0.00 0.00 0.00 6.46
3113 6421 5.077424 CGTTCTAACTAAAATGTGAACCGC 58.923 41.667 0.00 0.00 32.69 5.68
3114 6422 6.456447 TCGTTCTAACTAAAATGTGAACCG 57.544 37.500 0.00 0.00 32.69 4.44
3115 6423 7.073883 GGTTCGTTCTAACTAAAATGTGAACC 58.926 38.462 0.00 0.00 43.12 3.62
3116 6424 6.788930 CGGTTCGTTCTAACTAAAATGTGAAC 59.211 38.462 0.00 0.00 33.19 3.18
3117 6425 6.479660 ACGGTTCGTTCTAACTAAAATGTGAA 59.520 34.615 0.00 0.00 36.35 3.18
3118 6426 5.984926 ACGGTTCGTTCTAACTAAAATGTGA 59.015 36.000 0.00 0.00 36.35 3.58
3119 6427 6.219302 ACGGTTCGTTCTAACTAAAATGTG 57.781 37.500 0.00 0.00 36.35 3.21
3134 6442 7.071014 TGTAAACTTAAAGAAAACGGTTCGT 57.929 32.000 0.00 0.00 43.97 3.85
3135 6443 9.649024 TTATGTAAACTTAAAGAAAACGGTTCG 57.351 29.630 0.00 0.00 0.00 3.95
3145 6453 8.862085 CCAAGGGGTTTTATGTAAACTTAAAGA 58.138 33.333 0.00 0.00 44.50 2.52
3146 6454 8.862085 TCCAAGGGGTTTTATGTAAACTTAAAG 58.138 33.333 0.00 0.00 44.50 1.85
3147 6455 8.779096 TCCAAGGGGTTTTATGTAAACTTAAA 57.221 30.769 0.00 0.00 44.50 1.52
3148 6456 8.959676 ATCCAAGGGGTTTTATGTAAACTTAA 57.040 30.769 0.00 0.00 44.50 1.85
3149 6457 8.959676 AATCCAAGGGGTTTTATGTAAACTTA 57.040 30.769 0.00 0.00 44.50 2.24
3150 6458 7.865530 AATCCAAGGGGTTTTATGTAAACTT 57.134 32.000 0.00 0.00 44.50 2.66
3151 6459 7.865530 AAATCCAAGGGGTTTTATGTAAACT 57.134 32.000 0.00 0.00 44.50 2.66
3154 6462 8.261522 GCATAAAATCCAAGGGGTTTTATGTAA 58.738 33.333 32.99 12.80 45.46 2.41
3155 6463 7.621683 AGCATAAAATCCAAGGGGTTTTATGTA 59.378 33.333 32.99 13.08 45.46 2.29
3156 6464 6.443527 AGCATAAAATCCAAGGGGTTTTATGT 59.556 34.615 32.99 24.14 45.46 2.29
3157 6465 6.888105 AGCATAAAATCCAAGGGGTTTTATG 58.112 36.000 31.10 31.10 45.82 1.90
3158 6466 8.616799 TTAGCATAAAATCCAAGGGGTTTTAT 57.383 30.769 16.69 16.69 38.92 1.40
3159 6467 8.616799 ATTAGCATAAAATCCAAGGGGTTTTA 57.383 30.769 14.01 14.01 35.51 1.52
3160 6468 6.943899 TTAGCATAAAATCCAAGGGGTTTT 57.056 33.333 10.75 10.75 37.62 2.43
3161 6469 7.509236 AATTAGCATAAAATCCAAGGGGTTT 57.491 32.000 0.00 0.00 34.93 3.27
3162 6470 8.482943 GTTAATTAGCATAAAATCCAAGGGGTT 58.517 33.333 0.00 0.00 34.93 4.11
3163 6471 7.070696 GGTTAATTAGCATAAAATCCAAGGGGT 59.929 37.037 1.55 0.00 34.93 4.95
3164 6472 7.441836 GGTTAATTAGCATAAAATCCAAGGGG 58.558 38.462 1.55 0.00 0.00 4.79
3165 6473 7.441836 GGGTTAATTAGCATAAAATCCAAGGG 58.558 38.462 1.55 0.00 0.00 3.95
3166 6474 7.145323 CGGGTTAATTAGCATAAAATCCAAGG 58.855 38.462 1.55 0.00 0.00 3.61
3167 6475 6.640907 GCGGGTTAATTAGCATAAAATCCAAG 59.359 38.462 1.55 0.00 0.00 3.61
3168 6476 6.508777 GCGGGTTAATTAGCATAAAATCCAA 58.491 36.000 1.55 0.00 0.00 3.53
3169 6477 5.278071 CGCGGGTTAATTAGCATAAAATCCA 60.278 40.000 0.00 0.00 0.00 3.41
3170 6478 5.151389 CGCGGGTTAATTAGCATAAAATCC 58.849 41.667 0.00 0.00 0.00 3.01
3171 6479 5.151389 CCGCGGGTTAATTAGCATAAAATC 58.849 41.667 20.10 0.00 0.00 2.17
3172 6480 4.581409 ACCGCGGGTTAATTAGCATAAAAT 59.419 37.500 31.76 0.00 27.29 1.82
3173 6481 3.946558 ACCGCGGGTTAATTAGCATAAAA 59.053 39.130 31.76 0.00 27.29 1.52
3174 6482 3.543665 ACCGCGGGTTAATTAGCATAAA 58.456 40.909 31.76 0.00 27.29 1.40
3175 6483 3.132925 GACCGCGGGTTAATTAGCATAA 58.867 45.455 31.76 0.00 35.25 1.90
3176 6484 2.366266 AGACCGCGGGTTAATTAGCATA 59.634 45.455 31.76 0.00 35.25 3.14
3177 6485 1.140252 AGACCGCGGGTTAATTAGCAT 59.860 47.619 31.76 2.41 35.25 3.79
3178 6486 0.538118 AGACCGCGGGTTAATTAGCA 59.462 50.000 31.76 0.00 35.25 3.49
3179 6487 2.035066 TCTAGACCGCGGGTTAATTAGC 59.965 50.000 31.76 6.61 35.25 3.09
3180 6488 3.996150 TCTAGACCGCGGGTTAATTAG 57.004 47.619 31.76 19.11 35.25 1.73
3181 6489 4.942761 AATCTAGACCGCGGGTTAATTA 57.057 40.909 31.76 8.77 35.25 1.40
3182 6490 3.832615 AATCTAGACCGCGGGTTAATT 57.167 42.857 31.76 18.23 35.25 1.40
3183 6491 3.832615 AAATCTAGACCGCGGGTTAAT 57.167 42.857 31.76 13.12 35.25 1.40
3184 6492 4.160252 ACTTAAATCTAGACCGCGGGTTAA 59.840 41.667 31.76 18.00 35.25 2.01
3185 6493 3.701040 ACTTAAATCTAGACCGCGGGTTA 59.299 43.478 31.76 19.50 35.25 2.85
3186 6494 2.498885 ACTTAAATCTAGACCGCGGGTT 59.501 45.455 31.76 19.41 35.25 4.11
3187 6495 2.105766 ACTTAAATCTAGACCGCGGGT 58.894 47.619 31.76 19.09 39.44 5.28
3188 6496 2.470821 CACTTAAATCTAGACCGCGGG 58.529 52.381 31.76 11.94 0.00 6.13
3189 6497 2.470821 CCACTTAAATCTAGACCGCGG 58.529 52.381 26.86 26.86 0.00 6.46
3190 6498 1.859080 GCCACTTAAATCTAGACCGCG 59.141 52.381 0.00 0.00 0.00 6.46
3191 6499 2.866762 CTGCCACTTAAATCTAGACCGC 59.133 50.000 0.00 0.00 0.00 5.68
3192 6500 2.866762 GCTGCCACTTAAATCTAGACCG 59.133 50.000 0.00 0.00 0.00 4.79
3193 6501 2.866762 CGCTGCCACTTAAATCTAGACC 59.133 50.000 0.00 0.00 0.00 3.85
3194 6502 3.782046 TCGCTGCCACTTAAATCTAGAC 58.218 45.455 0.00 0.00 0.00 2.59
3195 6503 4.465632 TTCGCTGCCACTTAAATCTAGA 57.534 40.909 0.00 0.00 0.00 2.43
3196 6504 4.811024 TGATTCGCTGCCACTTAAATCTAG 59.189 41.667 0.00 0.00 0.00 2.43
3197 6505 4.765273 TGATTCGCTGCCACTTAAATCTA 58.235 39.130 0.00 0.00 0.00 1.98
3198 6506 3.609853 TGATTCGCTGCCACTTAAATCT 58.390 40.909 0.00 0.00 0.00 2.40
3199 6507 4.558538 ATGATTCGCTGCCACTTAAATC 57.441 40.909 0.00 0.00 0.00 2.17
3200 6508 7.928307 ATATATGATTCGCTGCCACTTAAAT 57.072 32.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.