Multiple sequence alignment - TraesCS7B01G126900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G126900 chr7B 100.000 6282 0 0 1 6282 151158409 151164690 0.000000e+00 11601.0
1 TraesCS7B01G126900 chr7B 75.362 276 61 6 2 274 5277032 5277303 6.610000e-25 126.0
2 TraesCS7B01G126900 chr7D 95.164 3784 130 28 288 4031 182601581 182605351 0.000000e+00 5925.0
3 TraesCS7B01G126900 chr7D 96.392 2079 61 7 4029 6103 182605464 182607532 0.000000e+00 3411.0
4 TraesCS7B01G126900 chr7D 81.888 392 71 0 1084 1475 182602342 182602733 1.310000e-86 331.0
5 TraesCS7B01G126900 chr7D 91.892 185 7 3 6098 6282 182608439 182608615 1.050000e-62 252.0
6 TraesCS7B01G126900 chr7D 82.828 99 14 3 97 194 597882941 597882845 1.120000e-12 86.1
7 TraesCS7B01G126900 chr7A 93.495 3505 179 20 348 3818 189009496 189006007 0.000000e+00 5164.0
8 TraesCS7B01G126900 chr7A 94.449 2468 93 20 3812 6264 189004778 189002340 0.000000e+00 3759.0
9 TraesCS7B01G126900 chr7A 99.635 274 1 0 1 274 617702000 617702273 9.400000e-138 501.0
10 TraesCS7B01G126900 chr7A 99.270 274 2 0 1 274 707630804 707630531 4.370000e-136 496.0
11 TraesCS7B01G126900 chr7A 80.000 395 79 0 1084 1478 189008794 189008400 6.160000e-75 292.0
12 TraesCS7B01G126900 chr3A 99.270 274 2 0 1 274 85375900 85376173 4.370000e-136 496.0
13 TraesCS7B01G126900 chr6B 94.891 274 14 0 1 274 26402289 26402562 4.500000e-116 429.0
14 TraesCS7B01G126900 chr1A 79.710 138 24 4 61 195 24396679 24396543 5.180000e-16 97.1
15 TraesCS7B01G126900 chr1A 74.860 179 41 4 3 179 449586167 449586343 1.880000e-10 78.7
16 TraesCS7B01G126900 chr3B 79.231 130 19 7 61 186 12571137 12571262 4.040000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G126900 chr7B 151158409 151164690 6281 False 11601.000000 11601 100.000000 1 6282 1 chr7B.!!$F2 6281
1 TraesCS7B01G126900 chr7D 182601581 182608615 7034 False 2479.750000 5925 91.334000 288 6282 4 chr7D.!!$F1 5994
2 TraesCS7B01G126900 chr7A 189002340 189009496 7156 True 3071.666667 5164 89.314667 348 6264 3 chr7A.!!$R2 5916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.032813 TTCCTCCGTCGGACCCTAAT 60.033 55.000 10.71 0.0 31.44 1.73 F
212 213 0.180171 TCCGTCGGACCCTAATCGTA 59.820 55.000 10.71 0.0 0.00 3.43 F
646 648 0.339162 TGTTGATTGGGCATGGGGAT 59.661 50.000 0.00 0.0 0.00 3.85 F
691 693 0.462225 TGCTGGTTCGTTTCCGTTGA 60.462 50.000 0.00 0.0 35.01 3.18 F
796 803 1.084842 ATGAGCTAGGGTTGGGGGT 59.915 57.895 0.00 0.0 0.00 4.95 F
986 1023 1.669604 TGTTGCCTTTCGTAGTTGCA 58.330 45.000 0.00 0.0 0.00 4.08 F
2825 2871 1.590932 CGGAGGAAATGAGAGCCATG 58.409 55.000 0.00 0.0 35.24 3.66 F
3183 3230 0.261402 TATGGTCAGGGGCATTTGGG 59.739 55.000 0.00 0.0 0.00 4.12 F
3810 3857 0.813184 ATTTCATTGCAGTCCAGGCG 59.187 50.000 0.00 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1778 0.452987 CAATGCAGCAATAGCCACGT 59.547 50.000 0.00 0.0 43.56 4.49 R
2073 2110 3.791122 GCATGGAAAATGACAGCGATCAG 60.791 47.826 0.00 0.0 30.46 2.90 R
2484 2521 2.112279 AGGGGAAGGTGTGTACTTGA 57.888 50.000 0.00 0.0 0.00 3.02 R
2785 2831 2.415512 GGAGTAACATTGACAACTCCGC 59.584 50.000 15.75 0.0 46.18 5.54 R
2807 2853 3.410508 GATCATGGCTCTCATTTCCTCC 58.589 50.000 0.00 0.0 32.92 4.30 R
2937 2983 2.096466 CACGAAGTTGCTTGCGACATTA 60.096 45.455 14.53 0.0 41.61 1.90 R
4723 6124 0.390124 CAAGGCCAAAGCAAGCTTCA 59.610 50.000 5.01 0.0 42.56 3.02 R
4801 6202 1.131638 AAGTCAAGACAGCACAGGGA 58.868 50.000 2.72 0.0 0.00 4.20 R
5581 6982 0.911769 TGGCACCTGGAAGTATGGAG 59.088 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.750828 GAGGGAAGAAAGCCTCTCG 57.249 57.895 0.00 0.00 31.02 4.04
19 20 1.187087 GAGGGAAGAAAGCCTCTCGA 58.813 55.000 0.00 0.00 31.02 4.04
20 21 1.136110 GAGGGAAGAAAGCCTCTCGAG 59.864 57.143 5.93 5.93 31.02 4.04
21 22 1.187087 GGGAAGAAAGCCTCTCGAGA 58.813 55.000 15.70 15.70 31.02 4.04
22 23 1.550976 GGGAAGAAAGCCTCTCGAGAA 59.449 52.381 17.36 0.35 31.02 2.87
23 24 2.028020 GGGAAGAAAGCCTCTCGAGAAA 60.028 50.000 17.36 0.00 31.02 2.52
24 25 2.997303 GGAAGAAAGCCTCTCGAGAAAC 59.003 50.000 17.36 11.24 31.02 2.78
25 26 2.753055 AGAAAGCCTCTCGAGAAACC 57.247 50.000 17.36 7.50 0.00 3.27
26 27 1.971357 AGAAAGCCTCTCGAGAAACCA 59.029 47.619 17.36 0.00 0.00 3.67
27 28 2.070028 GAAAGCCTCTCGAGAAACCAC 58.930 52.381 17.36 4.30 0.00 4.16
28 29 0.321996 AAGCCTCTCGAGAAACCACC 59.678 55.000 17.36 1.50 0.00 4.61
29 30 0.832135 AGCCTCTCGAGAAACCACCA 60.832 55.000 17.36 0.00 0.00 4.17
30 31 0.250513 GCCTCTCGAGAAACCACCAT 59.749 55.000 17.36 0.00 0.00 3.55
31 32 1.339151 GCCTCTCGAGAAACCACCATT 60.339 52.381 17.36 0.00 0.00 3.16
32 33 2.876079 GCCTCTCGAGAAACCACCATTT 60.876 50.000 17.36 0.00 0.00 2.32
33 34 3.618997 GCCTCTCGAGAAACCACCATTTA 60.619 47.826 17.36 0.00 0.00 1.40
34 35 4.575885 CCTCTCGAGAAACCACCATTTAA 58.424 43.478 17.36 0.00 0.00 1.52
35 36 5.186198 CCTCTCGAGAAACCACCATTTAAT 58.814 41.667 17.36 0.00 0.00 1.40
36 37 5.648092 CCTCTCGAGAAACCACCATTTAATT 59.352 40.000 17.36 0.00 0.00 1.40
37 38 6.151144 CCTCTCGAGAAACCACCATTTAATTT 59.849 38.462 17.36 0.00 0.00 1.82
38 39 7.335924 CCTCTCGAGAAACCACCATTTAATTTA 59.664 37.037 17.36 0.00 0.00 1.40
39 40 8.624367 TCTCGAGAAACCACCATTTAATTTAA 57.376 30.769 14.01 0.00 0.00 1.52
40 41 8.508875 TCTCGAGAAACCACCATTTAATTTAAC 58.491 33.333 14.01 0.00 0.00 2.01
41 42 7.595604 TCGAGAAACCACCATTTAATTTAACC 58.404 34.615 0.00 0.00 0.00 2.85
42 43 6.525280 CGAGAAACCACCATTTAATTTAACCG 59.475 38.462 0.00 0.00 0.00 4.44
43 44 7.527568 AGAAACCACCATTTAATTTAACCGA 57.472 32.000 0.00 0.00 0.00 4.69
44 45 7.599171 AGAAACCACCATTTAATTTAACCGAG 58.401 34.615 0.00 0.00 0.00 4.63
45 46 7.449086 AGAAACCACCATTTAATTTAACCGAGA 59.551 33.333 0.00 0.00 0.00 4.04
46 47 7.527568 AACCACCATTTAATTTAACCGAGAA 57.472 32.000 0.00 0.00 0.00 2.87
47 48 6.916440 ACCACCATTTAATTTAACCGAGAAC 58.084 36.000 0.00 0.00 0.00 3.01
48 49 6.071784 ACCACCATTTAATTTAACCGAGAACC 60.072 38.462 0.00 0.00 0.00 3.62
49 50 6.152154 CCACCATTTAATTTAACCGAGAACCT 59.848 38.462 0.00 0.00 0.00 3.50
50 51 7.027161 CACCATTTAATTTAACCGAGAACCTG 58.973 38.462 0.00 0.00 0.00 4.00
51 52 6.152154 ACCATTTAATTTAACCGAGAACCTGG 59.848 38.462 0.00 0.00 0.00 4.45
52 53 5.632244 TTTAATTTAACCGAGAACCTGGC 57.368 39.130 0.00 0.00 0.00 4.85
53 54 2.871096 ATTTAACCGAGAACCTGGCA 57.129 45.000 0.00 0.00 0.00 4.92
54 55 2.178912 TTTAACCGAGAACCTGGCAG 57.821 50.000 7.75 7.75 0.00 4.85
55 56 1.344065 TTAACCGAGAACCTGGCAGA 58.656 50.000 17.94 0.00 0.00 4.26
56 57 1.344065 TAACCGAGAACCTGGCAGAA 58.656 50.000 17.94 0.00 0.00 3.02
57 58 0.035458 AACCGAGAACCTGGCAGAAG 59.965 55.000 17.94 2.11 0.00 2.85
58 59 1.122019 ACCGAGAACCTGGCAGAAGT 61.122 55.000 17.94 2.87 0.00 3.01
59 60 0.671781 CCGAGAACCTGGCAGAAGTG 60.672 60.000 17.94 0.84 0.00 3.16
60 61 0.318441 CGAGAACCTGGCAGAAGTGA 59.682 55.000 17.94 0.00 0.00 3.41
61 62 1.802069 GAGAACCTGGCAGAAGTGAC 58.198 55.000 17.94 4.86 0.00 3.67
62 63 1.070758 GAGAACCTGGCAGAAGTGACA 59.929 52.381 17.94 0.00 40.51 3.58
63 64 1.202698 AGAACCTGGCAGAAGTGACAC 60.203 52.381 17.94 0.00 36.47 3.67
64 65 0.546122 AACCTGGCAGAAGTGACACA 59.454 50.000 17.94 0.00 36.47 3.72
65 66 0.179045 ACCTGGCAGAAGTGACACAC 60.179 55.000 17.94 1.54 36.47 3.82
66 67 0.886490 CCTGGCAGAAGTGACACACC 60.886 60.000 17.94 1.84 36.47 4.16
67 68 0.107456 CTGGCAGAAGTGACACACCT 59.893 55.000 9.42 1.07 36.47 4.00
68 69 0.106708 TGGCAGAAGTGACACACCTC 59.893 55.000 8.59 1.46 36.47 3.85
69 70 0.106708 GGCAGAAGTGACACACCTCA 59.893 55.000 8.59 0.00 34.49 3.86
70 71 1.271054 GGCAGAAGTGACACACCTCAT 60.271 52.381 8.59 0.00 34.49 2.90
71 72 2.028112 GGCAGAAGTGACACACCTCATA 60.028 50.000 8.59 0.00 34.49 2.15
72 73 3.557054 GGCAGAAGTGACACACCTCATAA 60.557 47.826 8.59 0.00 34.49 1.90
73 74 4.256920 GCAGAAGTGACACACCTCATAAT 58.743 43.478 8.59 0.00 34.49 1.28
74 75 4.331168 GCAGAAGTGACACACCTCATAATC 59.669 45.833 8.59 0.00 34.49 1.75
75 76 5.482006 CAGAAGTGACACACCTCATAATCA 58.518 41.667 8.59 0.00 34.49 2.57
76 77 6.111382 CAGAAGTGACACACCTCATAATCAT 58.889 40.000 8.59 0.00 34.49 2.45
77 78 6.036844 CAGAAGTGACACACCTCATAATCATG 59.963 42.308 8.59 0.00 34.49 3.07
78 79 4.194640 AGTGACACACCTCATAATCATGC 58.805 43.478 8.59 0.00 34.49 4.06
79 80 3.001634 GTGACACACCTCATAATCATGCG 59.998 47.826 0.00 0.00 31.73 4.73
80 81 2.545526 GACACACCTCATAATCATGCGG 59.454 50.000 0.00 0.00 41.92 5.69
81 82 2.170397 ACACACCTCATAATCATGCGGA 59.830 45.455 0.00 0.00 39.05 5.54
82 83 3.181451 ACACACCTCATAATCATGCGGAT 60.181 43.478 0.00 0.00 39.05 4.18
83 84 3.434641 CACACCTCATAATCATGCGGATC 59.565 47.826 0.00 0.00 39.05 3.36
84 85 3.005554 CACCTCATAATCATGCGGATCC 58.994 50.000 0.00 0.00 39.05 3.36
85 86 2.639347 ACCTCATAATCATGCGGATCCA 59.361 45.455 13.41 0.00 39.05 3.41
86 87 3.268330 CCTCATAATCATGCGGATCCAG 58.732 50.000 13.41 5.88 39.05 3.86
87 88 3.268330 CTCATAATCATGCGGATCCAGG 58.732 50.000 13.41 0.00 34.28 4.45
88 89 2.026915 TCATAATCATGCGGATCCAGGG 60.027 50.000 13.41 0.00 34.28 4.45
89 90 1.434188 TAATCATGCGGATCCAGGGT 58.566 50.000 13.41 0.00 34.28 4.34
90 91 0.552848 AATCATGCGGATCCAGGGTT 59.447 50.000 13.41 0.00 34.28 4.11
91 92 0.179009 ATCATGCGGATCCAGGGTTG 60.179 55.000 13.41 1.83 0.00 3.77
92 93 1.224315 CATGCGGATCCAGGGTTGA 59.776 57.895 13.41 0.00 0.00 3.18
93 94 0.816825 CATGCGGATCCAGGGTTGAG 60.817 60.000 13.41 0.00 0.00 3.02
94 95 2.514824 GCGGATCCAGGGTTGAGC 60.515 66.667 13.41 0.00 0.00 4.26
95 96 2.202932 CGGATCCAGGGTTGAGCG 60.203 66.667 13.41 0.00 0.00 5.03
96 97 2.721167 CGGATCCAGGGTTGAGCGA 61.721 63.158 13.41 0.00 0.00 4.93
97 98 1.602237 GGATCCAGGGTTGAGCGAA 59.398 57.895 6.95 0.00 0.00 4.70
98 99 0.035439 GGATCCAGGGTTGAGCGAAA 60.035 55.000 6.95 0.00 0.00 3.46
99 100 1.087501 GATCCAGGGTTGAGCGAAAC 58.912 55.000 0.00 0.00 0.00 2.78
109 110 4.079665 GTTGAGCGAAACCAAATCTACC 57.920 45.455 0.00 0.00 0.00 3.18
110 111 2.706890 TGAGCGAAACCAAATCTACCC 58.293 47.619 0.00 0.00 0.00 3.69
111 112 2.039216 TGAGCGAAACCAAATCTACCCA 59.961 45.455 0.00 0.00 0.00 4.51
112 113 2.678336 GAGCGAAACCAAATCTACCCAG 59.322 50.000 0.00 0.00 0.00 4.45
113 114 1.132453 GCGAAACCAAATCTACCCAGC 59.868 52.381 0.00 0.00 0.00 4.85
114 115 2.432444 CGAAACCAAATCTACCCAGCA 58.568 47.619 0.00 0.00 0.00 4.41
115 116 2.161609 CGAAACCAAATCTACCCAGCAC 59.838 50.000 0.00 0.00 0.00 4.40
116 117 2.215942 AACCAAATCTACCCAGCACC 57.784 50.000 0.00 0.00 0.00 5.01
117 118 1.372501 ACCAAATCTACCCAGCACCT 58.627 50.000 0.00 0.00 0.00 4.00
118 119 1.004745 ACCAAATCTACCCAGCACCTG 59.995 52.381 0.00 0.00 0.00 4.00
119 120 1.098050 CAAATCTACCCAGCACCTGC 58.902 55.000 0.00 0.00 42.49 4.85
143 144 3.356814 AAAAATCCACTCCACCCGG 57.643 52.632 0.00 0.00 0.00 5.73
144 145 0.481128 AAAAATCCACTCCACCCGGT 59.519 50.000 0.00 0.00 0.00 5.28
145 146 0.037734 AAAATCCACTCCACCCGGTC 59.962 55.000 0.00 0.00 0.00 4.79
146 147 2.180159 AAATCCACTCCACCCGGTCG 62.180 60.000 0.00 0.00 0.00 4.79
147 148 3.899545 ATCCACTCCACCCGGTCGT 62.900 63.158 0.00 0.00 0.00 4.34
148 149 2.503846 ATCCACTCCACCCGGTCGTA 62.504 60.000 0.00 0.00 0.00 3.43
149 150 2.570181 CACTCCACCCGGTCGTAC 59.430 66.667 0.00 0.00 0.00 3.67
150 151 3.058160 ACTCCACCCGGTCGTACG 61.058 66.667 9.53 9.53 0.00 3.67
151 152 4.487412 CTCCACCCGGTCGTACGC 62.487 72.222 11.24 5.74 0.00 4.42
154 155 4.060038 CACCCGGTCGTACGCCTT 62.060 66.667 21.03 7.50 0.00 4.35
155 156 3.752339 ACCCGGTCGTACGCCTTC 61.752 66.667 21.03 8.49 0.00 3.46
156 157 3.751246 CCCGGTCGTACGCCTTCA 61.751 66.667 21.03 0.00 0.00 3.02
157 158 2.493030 CCGGTCGTACGCCTTCAT 59.507 61.111 21.03 0.00 0.00 2.57
158 159 1.588139 CCGGTCGTACGCCTTCATC 60.588 63.158 21.03 1.30 0.00 2.92
159 160 1.138036 CGGTCGTACGCCTTCATCA 59.862 57.895 21.03 0.00 0.00 3.07
160 161 0.248907 CGGTCGTACGCCTTCATCAT 60.249 55.000 21.03 0.00 0.00 2.45
161 162 1.002142 CGGTCGTACGCCTTCATCATA 60.002 52.381 21.03 0.00 0.00 2.15
162 163 2.351447 CGGTCGTACGCCTTCATCATAT 60.351 50.000 21.03 0.00 0.00 1.78
163 164 3.243336 GGTCGTACGCCTTCATCATATC 58.757 50.000 11.24 0.00 0.00 1.63
164 165 3.243336 GTCGTACGCCTTCATCATATCC 58.757 50.000 11.24 0.00 0.00 2.59
165 166 2.888414 TCGTACGCCTTCATCATATCCA 59.112 45.455 11.24 0.00 0.00 3.41
166 167 3.319689 TCGTACGCCTTCATCATATCCAA 59.680 43.478 11.24 0.00 0.00 3.53
167 168 3.428870 CGTACGCCTTCATCATATCCAAC 59.571 47.826 0.52 0.00 0.00 3.77
168 169 3.845781 ACGCCTTCATCATATCCAACT 57.154 42.857 0.00 0.00 0.00 3.16
169 170 4.156455 ACGCCTTCATCATATCCAACTT 57.844 40.909 0.00 0.00 0.00 2.66
170 171 4.526970 ACGCCTTCATCATATCCAACTTT 58.473 39.130 0.00 0.00 0.00 2.66
171 172 5.680619 ACGCCTTCATCATATCCAACTTTA 58.319 37.500 0.00 0.00 0.00 1.85
172 173 5.527582 ACGCCTTCATCATATCCAACTTTAC 59.472 40.000 0.00 0.00 0.00 2.01
173 174 5.760253 CGCCTTCATCATATCCAACTTTACT 59.240 40.000 0.00 0.00 0.00 2.24
174 175 6.293081 CGCCTTCATCATATCCAACTTTACTG 60.293 42.308 0.00 0.00 0.00 2.74
175 176 6.514048 GCCTTCATCATATCCAACTTTACTGC 60.514 42.308 0.00 0.00 0.00 4.40
176 177 6.543465 CCTTCATCATATCCAACTTTACTGCA 59.457 38.462 0.00 0.00 0.00 4.41
177 178 6.925610 TCATCATATCCAACTTTACTGCAC 57.074 37.500 0.00 0.00 0.00 4.57
178 179 6.413892 TCATCATATCCAACTTTACTGCACA 58.586 36.000 0.00 0.00 0.00 4.57
179 180 6.539826 TCATCATATCCAACTTTACTGCACAG 59.460 38.462 0.00 0.00 0.00 3.66
180 181 6.048732 TCATATCCAACTTTACTGCACAGA 57.951 37.500 4.31 0.00 0.00 3.41
181 182 6.108687 TCATATCCAACTTTACTGCACAGAG 58.891 40.000 4.31 0.00 0.00 3.35
182 183 3.838244 TCCAACTTTACTGCACAGAGT 57.162 42.857 4.31 0.00 0.00 3.24
183 184 3.466836 TCCAACTTTACTGCACAGAGTG 58.533 45.455 4.31 0.00 36.51 3.51
184 185 2.549754 CCAACTTTACTGCACAGAGTGG 59.450 50.000 4.31 0.00 33.64 4.00
185 186 3.206150 CAACTTTACTGCACAGAGTGGT 58.794 45.455 4.31 0.00 33.64 4.16
186 187 2.838736 ACTTTACTGCACAGAGTGGTG 58.161 47.619 4.31 0.00 41.72 4.17
187 188 2.170607 ACTTTACTGCACAGAGTGGTGT 59.829 45.455 4.31 0.00 40.89 4.16
188 189 2.526304 TTACTGCACAGAGTGGTGTC 57.474 50.000 4.31 0.00 40.89 3.67
189 190 1.704641 TACTGCACAGAGTGGTGTCT 58.295 50.000 4.31 0.00 40.89 3.41
190 191 0.833287 ACTGCACAGAGTGGTGTCTT 59.167 50.000 4.31 0.00 40.89 3.01
191 192 1.202580 ACTGCACAGAGTGGTGTCTTC 60.203 52.381 4.31 0.00 40.89 2.87
192 193 0.106708 TGCACAGAGTGGTGTCTTCC 59.893 55.000 0.00 0.00 40.89 3.46
193 194 0.394565 GCACAGAGTGGTGTCTTCCT 59.605 55.000 0.00 0.00 40.89 3.36
194 195 1.606737 GCACAGAGTGGTGTCTTCCTC 60.607 57.143 0.00 0.00 40.89 3.71
195 196 1.001406 CACAGAGTGGTGTCTTCCTCC 59.999 57.143 0.00 0.00 34.09 4.30
196 197 0.244994 CAGAGTGGTGTCTTCCTCCG 59.755 60.000 0.00 0.00 0.00 4.63
197 198 0.178958 AGAGTGGTGTCTTCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
198 199 0.244178 GAGTGGTGTCTTCCTCCGTC 59.756 60.000 0.00 0.00 0.00 4.79
199 200 1.080705 GTGGTGTCTTCCTCCGTCG 60.081 63.158 0.00 0.00 0.00 5.12
200 201 2.273179 TGGTGTCTTCCTCCGTCGG 61.273 63.158 4.39 4.39 0.00 4.79
201 202 1.975407 GGTGTCTTCCTCCGTCGGA 60.975 63.158 14.54 14.54 0.00 4.55
202 203 1.212229 GTGTCTTCCTCCGTCGGAC 59.788 63.158 10.71 0.13 31.44 4.79
203 204 1.975407 TGTCTTCCTCCGTCGGACC 60.975 63.158 10.71 0.00 31.44 4.46
204 205 2.362120 TCTTCCTCCGTCGGACCC 60.362 66.667 10.71 0.00 31.44 4.46
205 206 2.362632 CTTCCTCCGTCGGACCCT 60.363 66.667 10.71 0.00 31.44 4.34
206 207 1.077212 CTTCCTCCGTCGGACCCTA 60.077 63.158 10.71 0.00 31.44 3.53
207 208 0.682209 CTTCCTCCGTCGGACCCTAA 60.682 60.000 10.71 1.52 31.44 2.69
208 209 0.032813 TTCCTCCGTCGGACCCTAAT 60.033 55.000 10.71 0.00 31.44 1.73
209 210 0.466922 TCCTCCGTCGGACCCTAATC 60.467 60.000 10.71 0.00 0.00 1.75
210 211 1.653115 CTCCGTCGGACCCTAATCG 59.347 63.158 10.71 0.00 0.00 3.34
211 212 1.077501 TCCGTCGGACCCTAATCGT 60.078 57.895 10.71 0.00 0.00 3.73
212 213 0.180171 TCCGTCGGACCCTAATCGTA 59.820 55.000 10.71 0.00 0.00 3.43
213 214 1.202806 TCCGTCGGACCCTAATCGTAT 60.203 52.381 10.71 0.00 0.00 3.06
214 215 1.068748 CCGTCGGACCCTAATCGTATG 60.069 57.143 4.91 0.00 0.00 2.39
215 216 1.605710 CGTCGGACCCTAATCGTATGT 59.394 52.381 1.91 0.00 0.00 2.29
216 217 2.603892 CGTCGGACCCTAATCGTATGTG 60.604 54.545 1.91 0.00 0.00 3.21
217 218 2.360165 GTCGGACCCTAATCGTATGTGT 59.640 50.000 0.00 0.00 0.00 3.72
218 219 2.359848 TCGGACCCTAATCGTATGTGTG 59.640 50.000 0.00 0.00 0.00 3.82
219 220 2.480845 GGACCCTAATCGTATGTGTGC 58.519 52.381 0.00 0.00 0.00 4.57
220 221 2.159014 GGACCCTAATCGTATGTGTGCA 60.159 50.000 0.00 0.00 0.00 4.57
221 222 3.494398 GGACCCTAATCGTATGTGTGCAT 60.494 47.826 0.00 0.00 39.03 3.96
222 223 4.127171 GACCCTAATCGTATGTGTGCATT 58.873 43.478 0.00 0.00 36.58 3.56
223 224 4.127171 ACCCTAATCGTATGTGTGCATTC 58.873 43.478 0.00 0.00 36.58 2.67
224 225 3.184379 CCCTAATCGTATGTGTGCATTCG 59.816 47.826 0.00 0.00 43.92 3.34
225 226 3.802139 CCTAATCGTATGTGTGCATTCGT 59.198 43.478 0.00 0.00 43.34 3.85
226 227 4.979815 CCTAATCGTATGTGTGCATTCGTA 59.020 41.667 0.00 0.00 43.34 3.43
227 228 5.633601 CCTAATCGTATGTGTGCATTCGTAT 59.366 40.000 0.00 1.46 43.34 3.06
228 229 4.972286 ATCGTATGTGTGCATTCGTATG 57.028 40.909 0.00 0.00 43.34 2.39
238 239 2.542766 CATTCGTATGCCACCAACAC 57.457 50.000 0.00 0.00 0.00 3.32
239 240 1.809547 CATTCGTATGCCACCAACACA 59.190 47.619 0.00 0.00 0.00 3.72
240 241 2.192664 TTCGTATGCCACCAACACAT 57.807 45.000 0.00 0.00 0.00 3.21
241 242 2.192664 TCGTATGCCACCAACACATT 57.807 45.000 0.00 0.00 0.00 2.71
242 243 3.336138 TCGTATGCCACCAACACATTA 57.664 42.857 0.00 0.00 0.00 1.90
243 244 3.879998 TCGTATGCCACCAACACATTAT 58.120 40.909 0.00 0.00 0.00 1.28
244 245 3.874543 TCGTATGCCACCAACACATTATC 59.125 43.478 0.00 0.00 0.00 1.75
245 246 3.876914 CGTATGCCACCAACACATTATCT 59.123 43.478 0.00 0.00 0.00 1.98
246 247 4.260743 CGTATGCCACCAACACATTATCTG 60.261 45.833 0.00 0.00 0.00 2.90
247 248 3.153369 TGCCACCAACACATTATCTGT 57.847 42.857 0.00 0.00 39.20 3.41
248 249 3.081061 TGCCACCAACACATTATCTGTC 58.919 45.455 0.00 0.00 35.29 3.51
249 250 3.081061 GCCACCAACACATTATCTGTCA 58.919 45.455 0.00 0.00 35.29 3.58
250 251 3.696051 GCCACCAACACATTATCTGTCAT 59.304 43.478 0.00 0.00 35.29 3.06
251 252 4.439153 GCCACCAACACATTATCTGTCATG 60.439 45.833 0.00 0.00 35.29 3.07
252 253 4.943093 CCACCAACACATTATCTGTCATGA 59.057 41.667 0.00 0.00 35.29 3.07
253 254 5.065602 CCACCAACACATTATCTGTCATGAG 59.934 44.000 0.00 0.00 35.29 2.90
254 255 4.637534 ACCAACACATTATCTGTCATGAGC 59.362 41.667 0.00 0.00 35.29 4.26
255 256 4.036027 CCAACACATTATCTGTCATGAGCC 59.964 45.833 0.00 0.00 35.29 4.70
256 257 3.461061 ACACATTATCTGTCATGAGCCG 58.539 45.455 0.00 0.00 35.29 5.52
257 258 3.118629 ACACATTATCTGTCATGAGCCGT 60.119 43.478 0.00 0.00 35.29 5.68
258 259 3.492383 CACATTATCTGTCATGAGCCGTC 59.508 47.826 0.00 0.00 35.29 4.79
259 260 2.890808 TTATCTGTCATGAGCCGTCC 57.109 50.000 0.00 0.00 0.00 4.79
260 261 1.040646 TATCTGTCATGAGCCGTCCC 58.959 55.000 0.00 0.00 0.00 4.46
261 262 2.021068 ATCTGTCATGAGCCGTCCCG 62.021 60.000 0.00 0.00 0.00 5.14
278 279 3.987404 GGAACGAATGCACAGCCT 58.013 55.556 0.00 0.00 0.00 4.58
279 280 3.153024 GGAACGAATGCACAGCCTA 57.847 52.632 0.00 0.00 0.00 3.93
280 281 1.009829 GGAACGAATGCACAGCCTAG 58.990 55.000 0.00 0.00 0.00 3.02
281 282 1.009829 GAACGAATGCACAGCCTAGG 58.990 55.000 3.67 3.67 0.00 3.02
282 283 1.026718 AACGAATGCACAGCCTAGGC 61.027 55.000 27.19 27.19 42.33 3.93
303 304 5.402398 GGCTCAAGGCTAATTACTGTTTTG 58.598 41.667 0.00 0.00 41.46 2.44
304 305 5.048013 GGCTCAAGGCTAATTACTGTTTTGT 60.048 40.000 0.00 0.00 41.46 2.83
305 306 6.150474 GGCTCAAGGCTAATTACTGTTTTGTA 59.850 38.462 0.00 0.00 41.46 2.41
363 364 1.376037 CGCACCCAACCTTCTCTCC 60.376 63.158 0.00 0.00 0.00 3.71
543 544 2.286523 CCCCTCTTCCGCACACTCT 61.287 63.158 0.00 0.00 0.00 3.24
560 561 1.204467 CTCTTTGGCTCTCGCTTCTCT 59.796 52.381 0.00 0.00 36.09 3.10
562 563 0.969149 TTTGGCTCTCGCTTCTCTCA 59.031 50.000 0.00 0.00 36.09 3.27
565 566 1.226945 GCTCTCGCTTCTCTCAGCC 60.227 63.158 0.00 0.00 36.31 4.85
574 575 1.002544 CTTCTCTCAGCCTTCGGGTTT 59.997 52.381 0.00 0.00 37.45 3.27
597 599 3.334054 AGCCCTCCCTTGCTGGTC 61.334 66.667 0.00 0.00 36.23 4.02
646 648 0.339162 TGTTGATTGGGCATGGGGAT 59.661 50.000 0.00 0.00 0.00 3.85
652 654 4.962836 GGGCATGGGGATGCTCGG 62.963 72.222 6.95 0.00 46.22 4.63
656 658 2.040464 ATGGGGATGCTCGGGTCT 60.040 61.111 0.00 0.00 0.00 3.85
667 669 0.673985 CTCGGGTCTCGGATATTGCA 59.326 55.000 0.00 0.00 39.77 4.08
668 670 1.068588 CTCGGGTCTCGGATATTGCAA 59.931 52.381 0.00 0.00 39.77 4.08
684 686 2.414750 CAAGGGTGCTGGTTCGTTT 58.585 52.632 0.00 0.00 0.00 3.60
689 691 1.441732 GGTGCTGGTTCGTTTCCGTT 61.442 55.000 0.00 0.00 35.01 4.44
691 693 0.462225 TGCTGGTTCGTTTCCGTTGA 60.462 50.000 0.00 0.00 35.01 3.18
698 700 2.392933 TCGTTTCCGTTGAATTGCAC 57.607 45.000 0.00 0.00 35.01 4.57
699 701 1.944024 TCGTTTCCGTTGAATTGCACT 59.056 42.857 0.00 0.00 35.01 4.40
738 740 2.088423 GTGATTTGGGCGTGATTGGTA 58.912 47.619 0.00 0.00 0.00 3.25
739 741 2.088423 TGATTTGGGCGTGATTGGTAC 58.912 47.619 0.00 0.00 0.00 3.34
741 743 3.055021 TGATTTGGGCGTGATTGGTACTA 60.055 43.478 0.00 0.00 0.00 1.82
744 746 2.737544 TGGGCGTGATTGGTACTAGTA 58.262 47.619 0.00 0.00 0.00 1.82
745 747 2.428171 TGGGCGTGATTGGTACTAGTAC 59.572 50.000 22.53 22.53 35.40 2.73
760 763 2.831685 AGTACACATGCTGTTCGGAA 57.168 45.000 6.30 0.00 33.91 4.30
766 769 1.448540 ATGCTGTTCGGAAGCGGAG 60.449 57.895 0.00 0.00 43.88 4.63
796 803 1.084842 ATGAGCTAGGGTTGGGGGT 59.915 57.895 0.00 0.00 0.00 4.95
836 850 2.793790 GCTGTAGTGCTGAGATGAATCG 59.206 50.000 0.00 0.00 0.00 3.34
840 854 5.582550 TGTAGTGCTGAGATGAATCGTTAG 58.417 41.667 0.00 0.00 0.00 2.34
845 859 4.631377 TGCTGAGATGAATCGTTAGTTTGG 59.369 41.667 0.00 0.00 0.00 3.28
867 901 2.113986 GGGATGCGGGGAAGATGG 59.886 66.667 0.00 0.00 0.00 3.51
914 948 5.059833 GCTAGGATGTGGAAAGATTAGTGG 58.940 45.833 0.00 0.00 0.00 4.00
938 974 4.221924 TGTTTAAGGATCAGGACGATGTGA 59.778 41.667 0.00 0.00 33.17 3.58
945 981 5.305386 AGGATCAGGACGATGTGATGAATAA 59.695 40.000 0.00 0.00 33.43 1.40
947 983 4.693283 TCAGGACGATGTGATGAATAACC 58.307 43.478 0.00 0.00 0.00 2.85
959 995 8.554835 TGTGATGAATAACCGAATTTCTTGTA 57.445 30.769 0.00 0.00 0.00 2.41
979 1015 6.811253 TGTATAAGAATTGTTGCCTTTCGT 57.189 33.333 0.00 0.00 0.00 3.85
986 1023 1.669604 TGTTGCCTTTCGTAGTTGCA 58.330 45.000 0.00 0.00 0.00 4.08
1016 1053 3.757248 GAATGGAGGGTGCGGCGAT 62.757 63.158 12.98 0.00 0.00 4.58
1361 1398 1.984570 TTCCAGAGGAGGCTGTCGG 60.985 63.158 0.00 0.00 34.06 4.79
1426 1463 3.529533 ACTGAAGCAGATGTAGATGCAC 58.470 45.455 0.82 0.00 45.01 4.57
1694 1731 9.073475 GATGTAGAGTACAGAGGATAAAGATGT 57.927 37.037 0.00 0.00 42.77 3.06
1741 1778 1.715785 TCACTGAGGGATGTGTGACA 58.284 50.000 0.00 0.00 34.94 3.58
1816 1853 2.789213 TGCTTGTGCATACCAGCTAAA 58.211 42.857 8.37 0.00 45.31 1.85
1991 2028 5.456265 GGTCATTCTCACTTTCTTTTCTGC 58.544 41.667 0.00 0.00 0.00 4.26
2040 2077 7.184936 TCCAACCCTGTATTTCCCTAGAATTTA 59.815 37.037 0.00 0.00 0.00 1.40
2089 2126 5.877012 ACTACATTCTGATCGCTGTCATTTT 59.123 36.000 0.00 0.00 0.00 1.82
2289 2326 6.818644 TCTTCTTTTCTTCGAGGAACCATATG 59.181 38.462 9.80 0.00 0.00 1.78
2292 2329 7.039882 TCTTTTCTTCGAGGAACCATATGTAC 58.960 38.462 9.80 0.00 0.00 2.90
2484 2521 7.068103 TGTTTGGACACAAGATAACAGAACAAT 59.932 33.333 0.00 0.00 37.97 2.71
2599 2638 8.969260 AAATTCATGCTATGACTGTAAGATGA 57.031 30.769 0.00 0.00 39.39 2.92
2606 2646 9.624373 ATGCTATGACTGTAAGATGAGATTTTT 57.376 29.630 0.00 0.00 37.43 1.94
2825 2871 1.590932 CGGAGGAAATGAGAGCCATG 58.409 55.000 0.00 0.00 35.24 3.66
2956 3002 2.873170 TAATGTCGCAAGCAACTTCG 57.127 45.000 0.00 0.00 37.18 3.79
3043 3090 9.480053 CTCTTTGGATAAAATGTGTTTCATTGT 57.520 29.630 0.00 0.00 44.85 2.71
3145 3192 6.481954 ACTTTAGGTTGATTTAGCTGTTCG 57.518 37.500 0.00 0.00 0.00 3.95
3183 3230 0.261402 TATGGTCAGGGGCATTTGGG 59.739 55.000 0.00 0.00 0.00 4.12
3360 3407 5.733226 TCGTTGTATTGGCTATGTTCATG 57.267 39.130 0.00 0.00 0.00 3.07
3495 3542 7.067496 ACAGAATTCCTTGTTTAGAGAGACA 57.933 36.000 0.65 0.00 0.00 3.41
3602 3649 5.747565 TCGAGTCTTAATTTGTTGCTGTTG 58.252 37.500 0.00 0.00 0.00 3.33
3699 3746 1.691976 TGGTACCAGACTCCTTGTGTG 59.308 52.381 11.60 0.00 39.38 3.82
3752 3799 1.503542 GTTCACAATCCAGGCGCAG 59.496 57.895 10.83 0.00 0.00 5.18
3810 3857 0.813184 ATTTCATTGCAGTCCAGGCG 59.187 50.000 0.00 0.00 0.00 5.52
3923 5206 4.081406 TGTTTCAGAAATCCCTGACATGG 58.919 43.478 0.00 0.00 42.33 3.66
3973 5256 2.098443 CACGCGGTTAAAATAAGGGCAT 59.902 45.455 12.47 0.00 0.00 4.40
4056 5454 2.391926 TTCCACTGGACACCTAGACA 57.608 50.000 0.00 0.00 0.00 3.41
4109 5507 3.316029 TCAAAGCTGATGTGGACAAACTG 59.684 43.478 0.00 0.00 0.00 3.16
4199 5597 3.562182 CAACTTGTTTGGGACTAAGGGT 58.438 45.455 0.00 0.00 0.00 4.34
4314 5715 6.413052 AGTGTGATTCTACTGAGATTTGCAT 58.587 36.000 0.00 0.00 0.00 3.96
4392 5793 3.384467 AGACCTTGGACATTTGTTGGTTG 59.616 43.478 0.00 0.00 0.00 3.77
4440 5841 7.343057 AGGTGATATCTGATGTACTTTCTGTGA 59.657 37.037 3.98 0.00 0.00 3.58
4723 6124 8.043710 TCCAAAAGGAACATACACAAAATTGTT 58.956 29.630 0.00 0.00 39.91 2.83
4801 6202 8.585881 TGTAGTATCTAGTTCTTTGCTCTGTTT 58.414 33.333 0.00 0.00 0.00 2.83
4857 6258 2.034507 CGTCGCTTGAAATAGCAGCTAC 60.035 50.000 3.59 0.00 41.28 3.58
4867 6268 9.162764 CTTGAAATAGCAGCTACTAGGTTAAAA 57.837 33.333 3.59 0.00 0.00 1.52
5034 6435 3.438360 CAGAAAACACAGGTTCTGTTGC 58.562 45.455 5.45 0.00 42.59 4.17
5200 6601 4.205587 AGCCTGATCAAATTCCAGATGTC 58.794 43.478 0.00 0.00 0.00 3.06
5413 6814 7.811282 ACCACACCCATAGACAATATGATTAA 58.189 34.615 0.00 0.00 0.00 1.40
5487 6888 4.141413 TGGATATCTTGACCATGGTTGAGG 60.141 45.833 20.85 9.65 0.00 3.86
5580 6981 5.808366 AGTATGTGGACTTCTTCACTTCA 57.192 39.130 0.00 0.00 35.15 3.02
5581 6982 5.542779 AGTATGTGGACTTCTTCACTTCAC 58.457 41.667 0.00 0.00 35.15 3.18
5582 6983 4.696479 ATGTGGACTTCTTCACTTCACT 57.304 40.909 0.00 0.00 35.15 3.41
5583 6984 4.060038 TGTGGACTTCTTCACTTCACTC 57.940 45.455 0.00 0.00 35.15 3.51
5584 6985 3.181465 TGTGGACTTCTTCACTTCACTCC 60.181 47.826 0.00 0.00 35.15 3.85
5585 6986 3.038280 TGGACTTCTTCACTTCACTCCA 58.962 45.455 0.00 0.00 0.00 3.86
5586 6987 3.648067 TGGACTTCTTCACTTCACTCCAT 59.352 43.478 0.00 0.00 0.00 3.41
5829 7230 4.606232 CGCCATCGTATTCGTGATTTTCTC 60.606 45.833 0.00 0.00 38.33 2.87
5831 7232 5.006746 GCCATCGTATTCGTGATTTTCTCTT 59.993 40.000 0.00 0.00 38.33 2.85
5847 7248 3.479489 TCTCTTGATGCAAGCTTTGTGA 58.521 40.909 0.00 0.00 40.84 3.58
5851 7252 4.986034 TCTTGATGCAAGCTTTGTGAATTG 59.014 37.500 0.00 0.00 40.84 2.32
5875 7276 1.016627 TGTTTGTGCTGCTGTCTCAC 58.983 50.000 0.00 0.00 0.00 3.51
6009 7412 1.442769 CTGGGTGTCTCAAATCACGG 58.557 55.000 0.00 0.00 35.67 4.94
6016 7419 3.791887 GTGTCTCAAATCACGGTAGATCG 59.208 47.826 0.00 0.00 0.00 3.69
6032 7435 3.270877 AGATCGCCAGCGTCTTAATTTT 58.729 40.909 12.32 0.00 40.74 1.82
6041 7444 4.917415 CAGCGTCTTAATTTTGAAGGTTGG 59.083 41.667 0.00 0.00 0.00 3.77
6059 7462 1.406180 TGGATGGCGATGCATTTCTTG 59.594 47.619 0.00 0.00 0.00 3.02
6060 7463 1.406539 GGATGGCGATGCATTTCTTGT 59.593 47.619 0.00 0.00 0.00 3.16
6111 8427 7.994334 AGAGAGTACGATTCTAAGGTGTTCTAT 59.006 37.037 0.00 0.00 0.00 1.98
6154 8470 8.947055 AACACTTATTCCATGGATTATTTTGC 57.053 30.769 17.06 0.00 0.00 3.68
6156 8472 6.144402 CACTTATTCCATGGATTATTTTGCGC 59.856 38.462 17.06 0.00 0.00 6.09
6166 8482 5.822519 TGGATTATTTTGCGCAGAGTTCTAT 59.177 36.000 11.31 0.00 0.00 1.98
6167 8483 6.017934 TGGATTATTTTGCGCAGAGTTCTATC 60.018 38.462 11.31 9.03 0.00 2.08
6168 8484 6.203723 GGATTATTTTGCGCAGAGTTCTATCT 59.796 38.462 11.31 0.00 0.00 1.98
6169 8485 7.385205 GGATTATTTTGCGCAGAGTTCTATCTA 59.615 37.037 11.31 0.00 0.00 1.98
6224 8547 9.530129 GAAATACTCTTGTTTTCTACAATGTCG 57.470 33.333 0.00 0.00 45.31 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.136110 CTCGAGAGGCTTTCTTCCCTC 59.864 57.143 6.58 0.00 46.39 4.30
1 2 1.190643 CTCGAGAGGCTTTCTTCCCT 58.809 55.000 6.58 0.00 35.87 4.20
2 3 1.187087 TCTCGAGAGGCTTTCTTCCC 58.813 55.000 12.08 0.00 35.87 3.97
3 4 2.997303 GTTTCTCGAGAGGCTTTCTTCC 59.003 50.000 15.94 0.00 35.87 3.46
4 5 2.997303 GGTTTCTCGAGAGGCTTTCTTC 59.003 50.000 15.94 0.32 35.87 2.87
5 6 2.368875 TGGTTTCTCGAGAGGCTTTCTT 59.631 45.455 15.94 0.00 35.87 2.52
6 7 1.971357 TGGTTTCTCGAGAGGCTTTCT 59.029 47.619 15.94 0.00 39.43 2.52
7 8 2.070028 GTGGTTTCTCGAGAGGCTTTC 58.930 52.381 15.94 4.57 0.00 2.62
8 9 1.270893 GGTGGTTTCTCGAGAGGCTTT 60.271 52.381 15.94 0.00 0.00 3.51
9 10 0.321996 GGTGGTTTCTCGAGAGGCTT 59.678 55.000 15.94 0.00 0.00 4.35
10 11 0.832135 TGGTGGTTTCTCGAGAGGCT 60.832 55.000 15.94 0.00 0.00 4.58
11 12 0.250513 ATGGTGGTTTCTCGAGAGGC 59.749 55.000 15.94 11.97 0.00 4.70
12 13 2.770164 AATGGTGGTTTCTCGAGAGG 57.230 50.000 15.94 0.00 0.00 3.69
13 14 6.743575 AATTAAATGGTGGTTTCTCGAGAG 57.256 37.500 15.94 0.00 0.00 3.20
14 15 8.508875 GTTAAATTAAATGGTGGTTTCTCGAGA 58.491 33.333 12.08 12.08 0.00 4.04
15 16 7.753580 GGTTAAATTAAATGGTGGTTTCTCGAG 59.246 37.037 5.93 5.93 0.00 4.04
16 17 7.573469 CGGTTAAATTAAATGGTGGTTTCTCGA 60.573 37.037 0.00 0.00 0.00 4.04
17 18 6.525280 CGGTTAAATTAAATGGTGGTTTCTCG 59.475 38.462 0.00 0.00 0.00 4.04
18 19 7.595604 TCGGTTAAATTAAATGGTGGTTTCTC 58.404 34.615 0.00 0.00 0.00 2.87
19 20 7.449086 TCTCGGTTAAATTAAATGGTGGTTTCT 59.551 33.333 0.00 0.00 0.00 2.52
20 21 7.595604 TCTCGGTTAAATTAAATGGTGGTTTC 58.404 34.615 0.00 0.00 0.00 2.78
21 22 7.527568 TCTCGGTTAAATTAAATGGTGGTTT 57.472 32.000 0.00 0.00 0.00 3.27
22 23 7.372714 GTTCTCGGTTAAATTAAATGGTGGTT 58.627 34.615 0.00 0.00 0.00 3.67
23 24 6.071784 GGTTCTCGGTTAAATTAAATGGTGGT 60.072 38.462 0.00 0.00 0.00 4.16
24 25 6.152154 AGGTTCTCGGTTAAATTAAATGGTGG 59.848 38.462 0.00 0.00 0.00 4.61
25 26 7.027161 CAGGTTCTCGGTTAAATTAAATGGTG 58.973 38.462 0.00 0.00 0.00 4.17
26 27 6.152154 CCAGGTTCTCGGTTAAATTAAATGGT 59.848 38.462 0.00 0.00 0.00 3.55
27 28 6.560711 CCAGGTTCTCGGTTAAATTAAATGG 58.439 40.000 0.00 0.00 0.00 3.16
28 29 6.033966 GCCAGGTTCTCGGTTAAATTAAATG 58.966 40.000 0.00 0.00 0.00 2.32
29 30 5.712917 TGCCAGGTTCTCGGTTAAATTAAAT 59.287 36.000 0.00 0.00 0.00 1.40
30 31 5.071370 TGCCAGGTTCTCGGTTAAATTAAA 58.929 37.500 0.00 0.00 0.00 1.52
31 32 4.653868 TGCCAGGTTCTCGGTTAAATTAA 58.346 39.130 0.00 0.00 0.00 1.40
32 33 4.020039 TCTGCCAGGTTCTCGGTTAAATTA 60.020 41.667 0.00 0.00 0.00 1.40
33 34 3.081804 CTGCCAGGTTCTCGGTTAAATT 58.918 45.455 0.00 0.00 0.00 1.82
34 35 2.304761 TCTGCCAGGTTCTCGGTTAAAT 59.695 45.455 0.00 0.00 0.00 1.40
35 36 1.695242 TCTGCCAGGTTCTCGGTTAAA 59.305 47.619 0.00 0.00 0.00 1.52
36 37 1.344065 TCTGCCAGGTTCTCGGTTAA 58.656 50.000 0.00 0.00 0.00 2.01
37 38 1.275291 CTTCTGCCAGGTTCTCGGTTA 59.725 52.381 0.00 0.00 0.00 2.85
38 39 0.035458 CTTCTGCCAGGTTCTCGGTT 59.965 55.000 0.00 0.00 0.00 4.44
39 40 1.122019 ACTTCTGCCAGGTTCTCGGT 61.122 55.000 0.00 0.00 0.00 4.69
40 41 0.671781 CACTTCTGCCAGGTTCTCGG 60.672 60.000 0.00 0.00 0.00 4.63
41 42 0.318441 TCACTTCTGCCAGGTTCTCG 59.682 55.000 0.00 0.00 0.00 4.04
42 43 1.070758 TGTCACTTCTGCCAGGTTCTC 59.929 52.381 0.00 0.00 0.00 2.87
43 44 1.131638 TGTCACTTCTGCCAGGTTCT 58.868 50.000 0.00 0.00 0.00 3.01
44 45 1.230324 GTGTCACTTCTGCCAGGTTC 58.770 55.000 0.00 0.00 0.00 3.62
45 46 0.546122 TGTGTCACTTCTGCCAGGTT 59.454 50.000 4.27 0.00 0.00 3.50
46 47 0.179045 GTGTGTCACTTCTGCCAGGT 60.179 55.000 4.27 0.00 0.00 4.00
47 48 0.886490 GGTGTGTCACTTCTGCCAGG 60.886 60.000 4.27 0.00 34.40 4.45
48 49 0.107456 AGGTGTGTCACTTCTGCCAG 59.893 55.000 4.27 0.00 34.40 4.85
49 50 0.106708 GAGGTGTGTCACTTCTGCCA 59.893 55.000 4.27 0.00 37.47 4.92
50 51 0.106708 TGAGGTGTGTCACTTCTGCC 59.893 55.000 4.27 0.00 40.41 4.85
51 52 2.175878 ATGAGGTGTGTCACTTCTGC 57.824 50.000 4.27 0.00 40.41 4.26
52 53 5.482006 TGATTATGAGGTGTGTCACTTCTG 58.518 41.667 4.27 0.00 40.41 3.02
53 54 5.745312 TGATTATGAGGTGTGTCACTTCT 57.255 39.130 4.27 1.58 40.41 2.85
54 55 5.220739 GCATGATTATGAGGTGTGTCACTTC 60.221 44.000 4.27 5.31 40.22 3.01
55 56 4.637534 GCATGATTATGAGGTGTGTCACTT 59.362 41.667 4.27 0.00 36.36 3.16
56 57 4.194640 GCATGATTATGAGGTGTGTCACT 58.805 43.478 4.27 0.00 36.36 3.41
57 58 3.001634 CGCATGATTATGAGGTGTGTCAC 59.998 47.826 0.85 0.00 36.36 3.67
58 59 3.197265 CGCATGATTATGAGGTGTGTCA 58.803 45.455 0.85 0.00 36.36 3.58
59 60 2.545526 CCGCATGATTATGAGGTGTGTC 59.454 50.000 11.50 0.00 45.82 3.67
60 61 2.564771 CCGCATGATTATGAGGTGTGT 58.435 47.619 11.50 0.00 45.82 3.72
66 67 3.268330 CCTGGATCCGCATGATTATGAG 58.732 50.000 7.39 0.00 36.36 2.90
67 68 2.026915 CCCTGGATCCGCATGATTATGA 60.027 50.000 7.39 0.00 36.36 2.15
68 69 2.290514 ACCCTGGATCCGCATGATTATG 60.291 50.000 7.39 0.00 37.36 1.90
69 70 1.988107 ACCCTGGATCCGCATGATTAT 59.012 47.619 7.39 0.00 32.41 1.28
70 71 1.434188 ACCCTGGATCCGCATGATTA 58.566 50.000 7.39 0.00 32.41 1.75
71 72 0.552848 AACCCTGGATCCGCATGATT 59.447 50.000 7.39 0.00 32.41 2.57
72 73 0.179009 CAACCCTGGATCCGCATGAT 60.179 55.000 7.39 0.00 36.01 2.45
73 74 1.224315 CAACCCTGGATCCGCATGA 59.776 57.895 7.39 0.00 0.00 3.07
74 75 0.816825 CTCAACCCTGGATCCGCATG 60.817 60.000 7.39 2.02 0.00 4.06
75 76 1.528824 CTCAACCCTGGATCCGCAT 59.471 57.895 7.39 0.00 0.00 4.73
76 77 2.989639 CTCAACCCTGGATCCGCA 59.010 61.111 7.39 0.00 0.00 5.69
77 78 2.514824 GCTCAACCCTGGATCCGC 60.515 66.667 7.39 0.00 0.00 5.54
78 79 2.202932 CGCTCAACCCTGGATCCG 60.203 66.667 7.39 1.76 0.00 4.18
79 80 0.035439 TTTCGCTCAACCCTGGATCC 60.035 55.000 4.20 4.20 0.00 3.36
80 81 1.087501 GTTTCGCTCAACCCTGGATC 58.912 55.000 0.00 0.00 0.00 3.36
81 82 0.322546 GGTTTCGCTCAACCCTGGAT 60.323 55.000 0.00 0.00 40.53 3.41
82 83 1.072505 GGTTTCGCTCAACCCTGGA 59.927 57.895 0.00 0.00 40.53 3.86
83 84 0.821711 TTGGTTTCGCTCAACCCTGG 60.822 55.000 10.54 0.00 45.18 4.45
84 85 1.028905 TTTGGTTTCGCTCAACCCTG 58.971 50.000 10.54 0.00 45.18 4.45
85 86 1.886542 GATTTGGTTTCGCTCAACCCT 59.113 47.619 10.54 0.00 45.18 4.34
86 87 1.886542 AGATTTGGTTTCGCTCAACCC 59.113 47.619 10.54 0.00 45.18 4.11
87 88 3.119955 GGTAGATTTGGTTTCGCTCAACC 60.120 47.826 6.91 6.91 45.88 3.77
88 89 3.119955 GGGTAGATTTGGTTTCGCTCAAC 60.120 47.826 0.00 0.00 0.00 3.18
89 90 3.078837 GGGTAGATTTGGTTTCGCTCAA 58.921 45.455 0.00 0.00 0.00 3.02
90 91 2.039216 TGGGTAGATTTGGTTTCGCTCA 59.961 45.455 0.00 0.00 0.00 4.26
91 92 2.678336 CTGGGTAGATTTGGTTTCGCTC 59.322 50.000 0.00 0.00 0.00 5.03
92 93 2.711542 CTGGGTAGATTTGGTTTCGCT 58.288 47.619 0.00 0.00 0.00 4.93
93 94 1.132453 GCTGGGTAGATTTGGTTTCGC 59.868 52.381 0.00 0.00 0.00 4.70
94 95 2.161609 GTGCTGGGTAGATTTGGTTTCG 59.838 50.000 0.00 0.00 0.00 3.46
95 96 2.492088 GGTGCTGGGTAGATTTGGTTTC 59.508 50.000 0.00 0.00 0.00 2.78
96 97 2.110011 AGGTGCTGGGTAGATTTGGTTT 59.890 45.455 0.00 0.00 0.00 3.27
97 98 1.710809 AGGTGCTGGGTAGATTTGGTT 59.289 47.619 0.00 0.00 0.00 3.67
98 99 1.004745 CAGGTGCTGGGTAGATTTGGT 59.995 52.381 0.00 0.00 0.00 3.67
99 100 1.755179 CAGGTGCTGGGTAGATTTGG 58.245 55.000 0.00 0.00 0.00 3.28
100 101 1.098050 GCAGGTGCTGGGTAGATTTG 58.902 55.000 0.00 0.00 38.21 2.32
101 102 3.577389 GCAGGTGCTGGGTAGATTT 57.423 52.632 0.00 0.00 38.21 2.17
125 126 0.481128 ACCGGGTGGAGTGGATTTTT 59.519 50.000 6.32 0.00 39.21 1.94
126 127 0.037734 GACCGGGTGGAGTGGATTTT 59.962 55.000 3.30 0.00 39.21 1.82
127 128 1.683441 GACCGGGTGGAGTGGATTT 59.317 57.895 3.30 0.00 39.21 2.17
128 129 2.656069 CGACCGGGTGGAGTGGATT 61.656 63.158 3.30 0.00 39.21 3.01
129 130 2.503846 TACGACCGGGTGGAGTGGAT 62.504 60.000 16.56 0.00 39.21 3.41
130 131 3.208623 TACGACCGGGTGGAGTGGA 62.209 63.158 16.56 0.00 39.21 4.02
131 132 2.677524 TACGACCGGGTGGAGTGG 60.678 66.667 16.56 0.00 39.21 4.00
132 133 2.570181 GTACGACCGGGTGGAGTG 59.430 66.667 16.56 0.00 39.21 3.51
133 134 3.058160 CGTACGACCGGGTGGAGT 61.058 66.667 16.56 10.09 39.21 3.85
134 135 4.487412 GCGTACGACCGGGTGGAG 62.487 72.222 21.65 7.77 39.21 3.86
137 138 3.976902 GAAGGCGTACGACCGGGTG 62.977 68.421 19.62 0.00 0.00 4.61
138 139 3.752339 GAAGGCGTACGACCGGGT 61.752 66.667 19.62 0.00 0.00 5.28
139 140 2.948840 GATGAAGGCGTACGACCGGG 62.949 65.000 19.62 0.00 0.00 5.73
140 141 1.588139 GATGAAGGCGTACGACCGG 60.588 63.158 19.62 0.00 0.00 5.28
141 142 0.248907 ATGATGAAGGCGTACGACCG 60.249 55.000 19.62 0.00 0.00 4.79
142 143 2.787601 TATGATGAAGGCGTACGACC 57.212 50.000 19.62 18.36 0.00 4.79
143 144 3.243336 GGATATGATGAAGGCGTACGAC 58.757 50.000 21.65 18.43 0.00 4.34
144 145 2.888414 TGGATATGATGAAGGCGTACGA 59.112 45.455 21.65 0.00 0.00 3.43
145 146 3.297830 TGGATATGATGAAGGCGTACG 57.702 47.619 11.84 11.84 0.00 3.67
146 147 4.632153 AGTTGGATATGATGAAGGCGTAC 58.368 43.478 0.00 0.00 0.00 3.67
147 148 4.955811 AGTTGGATATGATGAAGGCGTA 57.044 40.909 0.00 0.00 0.00 4.42
148 149 3.845781 AGTTGGATATGATGAAGGCGT 57.154 42.857 0.00 0.00 0.00 5.68
149 150 5.760253 AGTAAAGTTGGATATGATGAAGGCG 59.240 40.000 0.00 0.00 0.00 5.52
150 151 6.514048 GCAGTAAAGTTGGATATGATGAAGGC 60.514 42.308 0.00 0.00 0.00 4.35
151 152 6.543465 TGCAGTAAAGTTGGATATGATGAAGG 59.457 38.462 0.00 0.00 0.00 3.46
152 153 7.066163 TGTGCAGTAAAGTTGGATATGATGAAG 59.934 37.037 0.00 0.00 0.00 3.02
153 154 6.883756 TGTGCAGTAAAGTTGGATATGATGAA 59.116 34.615 0.00 0.00 0.00 2.57
154 155 6.413892 TGTGCAGTAAAGTTGGATATGATGA 58.586 36.000 0.00 0.00 0.00 2.92
155 156 6.539826 TCTGTGCAGTAAAGTTGGATATGATG 59.460 38.462 0.00 0.00 0.00 3.07
156 157 6.653020 TCTGTGCAGTAAAGTTGGATATGAT 58.347 36.000 0.00 0.00 0.00 2.45
157 158 6.048732 TCTGTGCAGTAAAGTTGGATATGA 57.951 37.500 0.00 0.00 0.00 2.15
158 159 5.877012 ACTCTGTGCAGTAAAGTTGGATATG 59.123 40.000 0.00 0.00 0.00 1.78
159 160 5.877012 CACTCTGTGCAGTAAAGTTGGATAT 59.123 40.000 0.00 0.00 0.00 1.63
160 161 5.237815 CACTCTGTGCAGTAAAGTTGGATA 58.762 41.667 0.00 0.00 0.00 2.59
161 162 4.067896 CACTCTGTGCAGTAAAGTTGGAT 58.932 43.478 0.00 0.00 0.00 3.41
162 163 3.466836 CACTCTGTGCAGTAAAGTTGGA 58.533 45.455 0.00 0.00 0.00 3.53
163 164 2.549754 CCACTCTGTGCAGTAAAGTTGG 59.450 50.000 0.00 0.00 31.34 3.77
164 165 3.002656 CACCACTCTGTGCAGTAAAGTTG 59.997 47.826 0.00 0.00 31.34 3.16
165 166 3.206150 CACCACTCTGTGCAGTAAAGTT 58.794 45.455 0.00 0.00 31.34 2.66
166 167 2.170607 ACACCACTCTGTGCAGTAAAGT 59.829 45.455 0.00 0.00 39.93 2.66
167 168 2.802816 GACACCACTCTGTGCAGTAAAG 59.197 50.000 0.00 0.00 39.93 1.85
168 169 2.434336 AGACACCACTCTGTGCAGTAAA 59.566 45.455 0.00 0.00 39.93 2.01
169 170 2.039418 AGACACCACTCTGTGCAGTAA 58.961 47.619 0.00 0.00 39.93 2.24
170 171 1.704641 AGACACCACTCTGTGCAGTA 58.295 50.000 0.00 0.00 39.93 2.74
171 172 0.833287 AAGACACCACTCTGTGCAGT 59.167 50.000 0.00 0.00 39.93 4.40
172 173 1.506493 GAAGACACCACTCTGTGCAG 58.494 55.000 0.00 0.00 39.93 4.41
173 174 0.106708 GGAAGACACCACTCTGTGCA 59.893 55.000 0.00 0.00 39.93 4.57
174 175 0.394565 AGGAAGACACCACTCTGTGC 59.605 55.000 0.00 0.00 39.93 4.57
175 176 1.001406 GGAGGAAGACACCACTCTGTG 59.999 57.143 0.00 0.00 42.05 3.66
176 177 1.343069 GGAGGAAGACACCACTCTGT 58.657 55.000 0.00 0.00 0.00 3.41
177 178 0.244994 CGGAGGAAGACACCACTCTG 59.755 60.000 0.00 0.00 0.00 3.35
178 179 0.178958 ACGGAGGAAGACACCACTCT 60.179 55.000 0.00 0.00 0.00 3.24
179 180 0.244178 GACGGAGGAAGACACCACTC 59.756 60.000 0.00 0.00 0.00 3.51
180 181 1.524863 CGACGGAGGAAGACACCACT 61.525 60.000 0.00 0.00 0.00 4.00
181 182 1.080705 CGACGGAGGAAGACACCAC 60.081 63.158 0.00 0.00 0.00 4.16
182 183 2.273179 CCGACGGAGGAAGACACCA 61.273 63.158 8.64 0.00 0.00 4.17
183 184 1.975407 TCCGACGGAGGAAGACACC 60.975 63.158 13.88 0.00 37.36 4.16
184 185 1.212229 GTCCGACGGAGGAAGACAC 59.788 63.158 18.98 0.00 42.77 3.67
185 186 1.975407 GGTCCGACGGAGGAAGACA 60.975 63.158 18.98 0.00 42.77 3.41
186 187 2.708865 GGGTCCGACGGAGGAAGAC 61.709 68.421 18.98 4.54 42.77 3.01
187 188 1.565390 TAGGGTCCGACGGAGGAAGA 61.565 60.000 18.98 0.00 42.77 2.87
188 189 0.682209 TTAGGGTCCGACGGAGGAAG 60.682 60.000 18.98 0.00 42.77 3.46
189 190 0.032813 ATTAGGGTCCGACGGAGGAA 60.033 55.000 18.98 9.36 42.77 3.36
190 191 0.466922 GATTAGGGTCCGACGGAGGA 60.467 60.000 18.98 1.84 38.11 3.71
191 192 1.793134 CGATTAGGGTCCGACGGAGG 61.793 65.000 18.98 0.00 29.39 4.30
192 193 1.099879 ACGATTAGGGTCCGACGGAG 61.100 60.000 18.98 5.33 29.39 4.63
193 194 0.180171 TACGATTAGGGTCCGACGGA 59.820 55.000 13.88 13.88 0.00 4.69
194 195 1.068748 CATACGATTAGGGTCCGACGG 60.069 57.143 7.84 7.84 0.00 4.79
195 196 1.605710 ACATACGATTAGGGTCCGACG 59.394 52.381 0.00 0.00 0.00 5.12
196 197 2.360165 ACACATACGATTAGGGTCCGAC 59.640 50.000 0.00 0.00 0.00 4.79
197 198 2.359848 CACACATACGATTAGGGTCCGA 59.640 50.000 0.00 0.00 0.00 4.55
198 199 2.739292 CACACATACGATTAGGGTCCG 58.261 52.381 0.00 0.00 0.00 4.79
199 200 2.159014 TGCACACATACGATTAGGGTCC 60.159 50.000 0.00 0.00 0.00 4.46
200 201 3.173668 TGCACACATACGATTAGGGTC 57.826 47.619 0.00 0.00 0.00 4.46
201 202 3.838244 ATGCACACATACGATTAGGGT 57.162 42.857 0.00 0.00 33.67 4.34
202 203 3.184379 CGAATGCACACATACGATTAGGG 59.816 47.826 0.00 0.00 34.62 3.53
203 204 3.802139 ACGAATGCACACATACGATTAGG 59.198 43.478 0.00 0.00 34.62 2.69
204 205 6.516739 CATACGAATGCACACATACGATTAG 58.483 40.000 0.00 0.00 34.62 1.73
205 206 6.446659 CATACGAATGCACACATACGATTA 57.553 37.500 0.00 0.00 34.62 1.75
206 207 5.328886 CATACGAATGCACACATACGATT 57.671 39.130 0.00 0.00 34.62 3.34
207 208 4.972286 CATACGAATGCACACATACGAT 57.028 40.909 0.00 0.00 34.62 3.73
219 220 1.809547 TGTGTTGGTGGCATACGAATG 59.190 47.619 0.00 0.00 36.09 2.67
220 221 2.192664 TGTGTTGGTGGCATACGAAT 57.807 45.000 0.00 0.00 29.52 3.34
221 222 2.192664 ATGTGTTGGTGGCATACGAA 57.807 45.000 0.00 0.00 0.00 3.85
222 223 2.192664 AATGTGTTGGTGGCATACGA 57.807 45.000 0.00 0.00 0.00 3.43
223 224 3.876914 AGATAATGTGTTGGTGGCATACG 59.123 43.478 0.00 0.00 0.00 3.06
224 225 4.640201 ACAGATAATGTGTTGGTGGCATAC 59.360 41.667 0.00 0.00 41.91 2.39
225 226 4.854173 ACAGATAATGTGTTGGTGGCATA 58.146 39.130 0.00 0.00 41.91 3.14
226 227 3.696051 GACAGATAATGTGTTGGTGGCAT 59.304 43.478 0.00 0.00 44.17 4.40
227 228 3.081061 GACAGATAATGTGTTGGTGGCA 58.919 45.455 0.00 0.00 44.17 4.92
228 229 3.081061 TGACAGATAATGTGTTGGTGGC 58.919 45.455 0.00 0.00 44.17 5.01
229 230 4.943093 TCATGACAGATAATGTGTTGGTGG 59.057 41.667 0.00 0.00 44.17 4.61
230 231 5.448225 GCTCATGACAGATAATGTGTTGGTG 60.448 44.000 0.00 0.00 44.17 4.17
231 232 4.637534 GCTCATGACAGATAATGTGTTGGT 59.362 41.667 0.00 0.00 44.17 3.67
232 233 4.036027 GGCTCATGACAGATAATGTGTTGG 59.964 45.833 0.00 0.00 44.17 3.77
233 234 4.260497 CGGCTCATGACAGATAATGTGTTG 60.260 45.833 0.00 0.00 44.17 3.33
234 235 3.873361 CGGCTCATGACAGATAATGTGTT 59.127 43.478 0.00 0.00 44.17 3.32
235 236 3.118629 ACGGCTCATGACAGATAATGTGT 60.119 43.478 0.00 0.00 44.17 3.72
236 237 3.461061 ACGGCTCATGACAGATAATGTG 58.539 45.455 0.00 0.00 44.17 3.21
238 239 3.062763 GGACGGCTCATGACAGATAATG 58.937 50.000 0.00 0.00 0.00 1.90
239 240 2.037772 GGGACGGCTCATGACAGATAAT 59.962 50.000 0.00 0.00 0.00 1.28
240 241 1.412710 GGGACGGCTCATGACAGATAA 59.587 52.381 0.00 0.00 0.00 1.75
241 242 1.040646 GGGACGGCTCATGACAGATA 58.959 55.000 0.00 0.00 0.00 1.98
242 243 1.826024 GGGACGGCTCATGACAGAT 59.174 57.895 0.00 0.00 0.00 2.90
243 244 3.298958 GGGACGGCTCATGACAGA 58.701 61.111 0.00 0.00 0.00 3.41
256 257 1.635663 CTGTGCATTCGTTCCGGGAC 61.636 60.000 1.39 1.39 0.00 4.46
257 258 1.375396 CTGTGCATTCGTTCCGGGA 60.375 57.895 0.00 0.00 0.00 5.14
258 259 3.039202 GCTGTGCATTCGTTCCGGG 62.039 63.158 0.00 0.00 0.00 5.73
259 260 2.480555 GCTGTGCATTCGTTCCGG 59.519 61.111 0.00 0.00 0.00 5.14
260 261 0.739462 TAGGCTGTGCATTCGTTCCG 60.739 55.000 0.00 0.00 0.00 4.30
261 262 1.009829 CTAGGCTGTGCATTCGTTCC 58.990 55.000 0.00 0.00 0.00 3.62
262 263 1.009829 CCTAGGCTGTGCATTCGTTC 58.990 55.000 0.00 0.00 0.00 3.95
263 264 1.026718 GCCTAGGCTGTGCATTCGTT 61.027 55.000 27.17 0.00 38.26 3.85
264 265 1.450312 GCCTAGGCTGTGCATTCGT 60.450 57.895 27.17 0.00 38.26 3.85
265 266 3.414272 GCCTAGGCTGTGCATTCG 58.586 61.111 27.17 0.00 38.26 3.34
276 277 4.101741 ACAGTAATTAGCCTTGAGCCTAGG 59.898 45.833 3.67 3.67 45.47 3.02
277 278 5.283457 ACAGTAATTAGCCTTGAGCCTAG 57.717 43.478 0.00 0.00 45.47 3.02
278 279 5.693769 AACAGTAATTAGCCTTGAGCCTA 57.306 39.130 0.00 0.00 45.47 3.93
279 280 4.576330 AACAGTAATTAGCCTTGAGCCT 57.424 40.909 0.00 0.00 45.47 4.58
280 281 5.048013 ACAAAACAGTAATTAGCCTTGAGCC 60.048 40.000 0.00 0.00 45.47 4.70
281 282 6.013842 ACAAAACAGTAATTAGCCTTGAGC 57.986 37.500 0.00 0.00 44.25 4.26
282 283 8.730680 ACATACAAAACAGTAATTAGCCTTGAG 58.269 33.333 0.00 0.00 0.00 3.02
283 284 8.630054 ACATACAAAACAGTAATTAGCCTTGA 57.370 30.769 0.00 0.00 0.00 3.02
298 299 9.309516 TCAGGATCGAACTATTACATACAAAAC 57.690 33.333 0.00 0.00 0.00 2.43
303 304 8.524487 AGGAATCAGGATCGAACTATTACATAC 58.476 37.037 0.00 0.00 0.00 2.39
304 305 8.523658 CAGGAATCAGGATCGAACTATTACATA 58.476 37.037 0.00 0.00 0.00 2.29
305 306 7.233553 TCAGGAATCAGGATCGAACTATTACAT 59.766 37.037 0.00 0.00 0.00 2.29
363 364 0.399091 TGGCTAGGGTGGATCAGGAG 60.399 60.000 0.00 0.00 0.00 3.69
529 530 0.884704 GCCAAAGAGTGTGCGGAAGA 60.885 55.000 0.00 0.00 0.00 2.87
530 531 0.886490 AGCCAAAGAGTGTGCGGAAG 60.886 55.000 0.00 0.00 0.00 3.46
532 533 1.301716 GAGCCAAAGAGTGTGCGGA 60.302 57.895 0.00 0.00 0.00 5.54
565 566 3.488090 GCTCCGCGAAACCCGAAG 61.488 66.667 8.23 0.00 41.76 3.79
620 622 1.284408 GCCCAATCAACAAACGCGA 59.716 52.632 15.93 0.00 0.00 5.87
646 648 0.673985 CAATATCCGAGACCCGAGCA 59.326 55.000 0.00 0.00 41.76 4.26
652 654 1.141053 ACCCTTGCAATATCCGAGACC 59.859 52.381 0.00 0.00 0.00 3.85
667 669 0.822121 GGAAACGAACCAGCACCCTT 60.822 55.000 0.00 0.00 0.00 3.95
668 670 1.228154 GGAAACGAACCAGCACCCT 60.228 57.895 0.00 0.00 0.00 4.34
682 684 3.899734 CATCAGTGCAATTCAACGGAAA 58.100 40.909 0.00 0.00 36.43 3.13
766 769 2.279502 TAGCTCATGGCCACGACGTC 62.280 60.000 8.16 5.18 43.05 4.34
796 803 2.687200 ACATGCTACCTCCCCGCA 60.687 61.111 0.00 0.00 38.14 5.69
836 850 2.031870 GCATCCCCATCCCAAACTAAC 58.968 52.381 0.00 0.00 0.00 2.34
840 854 2.127232 CCGCATCCCCATCCCAAAC 61.127 63.158 0.00 0.00 0.00 2.93
845 859 3.497884 CTTCCCCGCATCCCCATCC 62.498 68.421 0.00 0.00 0.00 3.51
867 901 3.006756 TAGGCAGTGGCAGTCTCGC 62.007 63.158 20.04 0.00 43.71 5.03
914 948 4.330074 CACATCGTCCTGATCCTTAAACAC 59.670 45.833 0.00 0.00 34.13 3.32
959 995 7.305474 CAACTACGAAAGGCAACAATTCTTAT 58.695 34.615 0.00 0.00 41.41 1.73
979 1015 2.334977 TCCCAACTCTTCCTGCAACTA 58.665 47.619 0.00 0.00 0.00 2.24
986 1023 1.918957 CCTCCATTCCCAACTCTTCCT 59.081 52.381 0.00 0.00 0.00 3.36
1016 1053 2.649034 GCACCGTCGAGTTCTCCA 59.351 61.111 0.00 0.00 0.00 3.86
1426 1463 3.720193 GCTGTCAGCACGCTGGTG 61.720 66.667 20.16 10.05 46.40 4.17
1481 1518 0.524392 CTCGATAGGATGATCCGCGC 60.524 60.000 15.91 0.00 42.75 6.86
1694 1731 5.890985 CCAATTATTGTCCAGGTAACATGGA 59.109 40.000 4.15 0.00 44.63 3.41
1741 1778 0.452987 CAATGCAGCAATAGCCACGT 59.547 50.000 0.00 0.00 43.56 4.49
1816 1853 9.683069 CATTCTTTAACTTTACTTGCATTCAGT 57.317 29.630 0.00 0.00 0.00 3.41
1991 2028 7.119407 TGGATAAACATTTGAATGCAAACCATG 59.881 33.333 0.00 0.00 45.94 3.66
2073 2110 3.791122 GCATGGAAAATGACAGCGATCAG 60.791 47.826 0.00 0.00 30.46 2.90
2089 2126 6.885918 CCAATACAGTATTGATATGGCATGGA 59.114 38.462 28.23 0.00 46.52 3.41
2289 2326 3.368236 GTGAGGTGAGAGAAAATGCGTAC 59.632 47.826 0.00 0.00 0.00 3.67
2292 2329 2.670414 GAGTGAGGTGAGAGAAAATGCG 59.330 50.000 0.00 0.00 0.00 4.73
2484 2521 2.112279 AGGGGAAGGTGTGTACTTGA 57.888 50.000 0.00 0.00 0.00 3.02
2785 2831 2.415512 GGAGTAACATTGACAACTCCGC 59.584 50.000 15.75 0.00 46.18 5.54
2807 2853 3.410508 GATCATGGCTCTCATTTCCTCC 58.589 50.000 0.00 0.00 32.92 4.30
2825 2871 4.468643 CCGTCTCAGCTATAACTTCGATC 58.531 47.826 0.00 0.00 0.00 3.69
2937 2983 2.096466 CACGAAGTTGCTTGCGACATTA 60.096 45.455 14.53 0.00 41.61 1.90
2956 3002 5.182001 AGACCTGAACACAAATATGAAGCAC 59.818 40.000 0.00 0.00 0.00 4.40
3109 3156 9.981460 AATCAACCTAAAGTTTGATTCTCCTAT 57.019 29.630 9.05 0.00 36.18 2.57
3114 3161 9.301897 AGCTAAATCAACCTAAAGTTTGATTCT 57.698 29.630 13.72 6.46 36.27 2.40
3118 3165 7.817418 ACAGCTAAATCAACCTAAAGTTTGA 57.183 32.000 0.00 0.00 36.18 2.69
3145 3192 5.088739 CCATATCTCTTGAAAACAACACGC 58.911 41.667 0.00 0.00 0.00 5.34
3360 3407 9.902196 GAAGGTAAGTGAAGCTACTATAATCTC 57.098 37.037 0.00 0.00 0.00 2.75
3376 3423 7.979444 TGGAAATCAGTTTAGAAGGTAAGTG 57.021 36.000 0.00 0.00 0.00 3.16
3495 3542 1.694150 TGGCTAAACAGCTCTGAGTGT 59.306 47.619 6.53 6.78 34.73 3.55
3683 3730 0.394565 GAGCACACAAGGAGTCTGGT 59.605 55.000 0.00 0.00 29.19 4.00
3699 3746 8.480643 TTTAATAAGCTGAACTTAGTGAGAGC 57.519 34.615 0.00 3.25 44.02 4.09
3793 3840 2.334946 GCGCCTGGACTGCAATGAA 61.335 57.895 0.00 0.00 0.00 2.57
3810 3857 6.226787 AGTAGATGTCCAGCAGTATATTTGC 58.773 40.000 4.50 4.50 41.83 3.68
3891 5174 5.043248 GGATTTCTGAAACAACACACCAAG 58.957 41.667 4.73 0.00 0.00 3.61
3896 5179 4.338118 GTCAGGGATTTCTGAAACAACACA 59.662 41.667 4.73 0.00 44.30 3.72
3953 5236 1.823797 TGCCCTTATTTTAACCGCGT 58.176 45.000 4.92 0.00 0.00 6.01
3973 5256 6.855763 AGCAATTCAAAACCCATCTAATGA 57.144 33.333 0.00 0.00 0.00 2.57
4056 5454 3.118261 ACATCACACTGAGACCAAACTGT 60.118 43.478 0.00 0.00 0.00 3.55
4109 5507 0.892814 AGCCAAAGAACTGCCAGAGC 60.893 55.000 0.00 0.00 40.48 4.09
4260 5661 1.757118 TGGAGATCCACTTCTAAGGCG 59.243 52.381 0.00 0.00 42.01 5.52
4286 5687 6.723298 AATCTCAGTAGAATCACACTAGGG 57.277 41.667 0.00 0.00 34.73 3.53
4314 5715 4.873827 GCTCCATTATGGTTGTTTCGAGTA 59.126 41.667 11.39 0.00 39.03 2.59
4440 5841 4.442401 TGATCACAGATATGGCATGGTT 57.558 40.909 10.98 0.00 0.00 3.67
4723 6124 0.390124 CAAGGCCAAAGCAAGCTTCA 59.610 50.000 5.01 0.00 42.56 3.02
4751 6152 4.756642 TGATGGTGAAAGTTCAGTTAGCAG 59.243 41.667 0.00 0.00 37.98 4.24
4801 6202 1.131638 AAGTCAAGACAGCACAGGGA 58.868 50.000 2.72 0.00 0.00 4.20
5200 6601 3.185246 ACTGAGTTGGTGTCAGAGTTG 57.815 47.619 7.09 0.00 43.65 3.16
5389 6790 7.391554 CCTTAATCATATTGTCTATGGGTGTGG 59.608 40.741 0.00 0.00 0.00 4.17
5413 6814 4.617875 GCATACAGCACGAACCCT 57.382 55.556 0.00 0.00 44.79 4.34
5487 6888 5.880054 TTTCCTCGGAGAATTTCATTCAC 57.120 39.130 6.58 0.00 41.71 3.18
5580 6981 0.912486 GGCACCTGGAAGTATGGAGT 59.088 55.000 0.00 0.00 0.00 3.85
5581 6982 0.911769 TGGCACCTGGAAGTATGGAG 59.088 55.000 0.00 0.00 0.00 3.86
5582 6983 1.367346 TTGGCACCTGGAAGTATGGA 58.633 50.000 0.00 0.00 0.00 3.41
5583 6984 2.214376 TTTGGCACCTGGAAGTATGG 57.786 50.000 0.00 0.00 0.00 2.74
5584 6985 3.157087 ACTTTTGGCACCTGGAAGTATG 58.843 45.455 0.00 0.00 0.00 2.39
5585 6986 3.525800 ACTTTTGGCACCTGGAAGTAT 57.474 42.857 0.00 0.00 0.00 2.12
5586 6987 3.306472 AACTTTTGGCACCTGGAAGTA 57.694 42.857 0.00 0.00 30.91 2.24
5829 7230 4.151689 CCAATTCACAAAGCTTGCATCAAG 59.848 41.667 0.00 2.40 43.57 3.02
5831 7232 3.069872 ACCAATTCACAAAGCTTGCATCA 59.930 39.130 0.00 0.00 0.00 3.07
5847 7248 4.202243 ACAGCAGCACAAACATTACCAATT 60.202 37.500 0.00 0.00 0.00 2.32
5851 7252 2.554032 AGACAGCAGCACAAACATTACC 59.446 45.455 0.00 0.00 0.00 2.85
6009 7412 2.486951 TTAAGACGCTGGCGATCTAC 57.513 50.000 21.77 7.23 42.83 2.59
6016 7419 3.057526 ACCTTCAAAATTAAGACGCTGGC 60.058 43.478 0.00 0.00 0.00 4.85
6032 7435 1.031571 GCATCGCCATCCAACCTTCA 61.032 55.000 0.00 0.00 0.00 3.02
6041 7444 2.855963 CAACAAGAAATGCATCGCCATC 59.144 45.455 0.00 0.00 0.00 3.51
6059 7462 1.295792 TCCAGTGACTGAAACGCAAC 58.704 50.000 15.33 0.00 32.44 4.17
6060 7463 2.254546 ATCCAGTGACTGAAACGCAA 57.745 45.000 15.33 0.00 32.44 4.85
6136 8452 4.341806 TCTGCGCAAAATAATCCATGGAAT 59.658 37.500 20.67 13.88 0.00 3.01
6154 8470 3.181486 TGCCACTTAGATAGAACTCTGCG 60.181 47.826 0.00 0.00 0.00 5.18
6156 8472 5.971763 AGTTGCCACTTAGATAGAACTCTG 58.028 41.667 0.00 0.00 0.00 3.35
6166 8482 5.417580 ACAAAAACAAGAGTTGCCACTTAGA 59.582 36.000 0.00 0.00 38.17 2.10
6167 8483 5.650543 ACAAAAACAAGAGTTGCCACTTAG 58.349 37.500 0.00 0.00 38.17 2.18
6168 8484 5.652994 ACAAAAACAAGAGTTGCCACTTA 57.347 34.783 0.00 0.00 38.17 2.24
6169 8485 4.535526 ACAAAAACAAGAGTTGCCACTT 57.464 36.364 0.00 0.00 38.17 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.