Multiple sequence alignment - TraesCS7B01G126400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G126400 chr7B 100.000 4650 0 0 1 4650 150544103 150539454 0.000000e+00 8588.0
1 TraesCS7B01G126400 chr7B 87.322 773 80 16 1008 1772 150562254 150561492 0.000000e+00 869.0
2 TraesCS7B01G126400 chr7B 87.703 553 53 9 2451 3001 154366546 154366007 8.490000e-177 630.0
3 TraesCS7B01G126400 chr7B 98.889 270 3 0 2734 3003 388157183 388157452 2.520000e-132 483.0
4 TraesCS7B01G126400 chr7B 97.834 277 5 1 2734 3010 500771793 500771518 1.170000e-130 477.0
5 TraesCS7B01G126400 chr7B 87.988 333 29 9 3329 3658 150561125 150560801 2.630000e-102 383.0
6 TraesCS7B01G126400 chr7B 89.226 297 32 0 1475 1771 150028721 150028425 5.680000e-99 372.0
7 TraesCS7B01G126400 chr7B 94.805 77 4 0 2239 2315 150068975 150068899 2.270000e-23 121.0
8 TraesCS7B01G126400 chr7D 90.900 2022 124 20 1 1978 182327853 182325848 0.000000e+00 2660.0
9 TraesCS7B01G126400 chr7D 92.558 1075 55 17 3000 4068 182325034 182323979 0.000000e+00 1519.0
10 TraesCS7B01G126400 chr7D 84.270 890 99 34 901 1771 182334452 182333585 0.000000e+00 830.0
11 TraesCS7B01G126400 chr7D 88.870 584 61 4 4070 4650 151696512 151695930 0.000000e+00 715.0
12 TraesCS7B01G126400 chr7D 87.863 585 69 2 4067 4649 312180591 312180007 0.000000e+00 686.0
13 TraesCS7B01G126400 chr7D 86.979 576 67 7 4070 4640 536143743 536143171 3.920000e-180 641.0
14 TraesCS7B01G126400 chr7D 86.783 575 72 4 4069 4640 213386601 213387174 5.070000e-179 638.0
15 TraesCS7B01G126400 chr7D 88.253 332 30 7 3329 3658 182333236 182332912 5.640000e-104 388.0
16 TraesCS7B01G126400 chr7D 88.889 297 33 0 1475 1771 181845911 181845615 2.640000e-97 366.0
17 TraesCS7B01G126400 chr7D 87.708 301 37 0 1472 1772 181975924 181975624 7.400000e-93 351.0
18 TraesCS7B01G126400 chr7D 83.934 305 47 2 1468 1771 54200777 54200474 1.640000e-74 291.0
19 TraesCS7B01G126400 chr7D 82.596 339 47 12 1027 1356 53640961 53640626 5.890000e-74 289.0
20 TraesCS7B01G126400 chr7D 84.014 294 45 2 1480 1772 24338673 24338965 9.850000e-72 281.0
21 TraesCS7B01G126400 chr7D 80.307 391 56 17 978 1356 54201225 54200844 4.580000e-70 276.0
22 TraesCS7B01G126400 chr7D 97.260 146 4 0 2173 2318 182325843 182325698 9.990000e-62 248.0
23 TraesCS7B01G126400 chr7D 96.241 133 5 0 2319 2451 182325163 182325031 7.830000e-53 219.0
24 TraesCS7B01G126400 chr7D 92.208 77 6 0 2239 2315 181845553 181845477 4.920000e-20 110.0
25 TraesCS7B01G126400 chr7A 90.713 1712 113 29 233 1921 189433126 189434814 0.000000e+00 2239.0
26 TraesCS7B01G126400 chr7A 85.917 774 86 15 1008 1771 189332011 189332771 0.000000e+00 804.0
27 TraesCS7B01G126400 chr7A 87.687 601 42 15 3284 3878 189437868 189438442 0.000000e+00 671.0
28 TraesCS7B01G126400 chr7A 96.129 310 6 4 2460 2763 643599535 643599844 6.950000e-138 501.0
29 TraesCS7B01G126400 chr7A 87.156 327 29 10 3336 3658 189338526 189338843 4.420000e-95 359.0
30 TraesCS7B01G126400 chr7A 87.584 298 35 2 1476 1772 189718518 189718814 1.240000e-90 344.0
31 TraesCS7B01G126400 chr7A 80.879 387 55 17 983 1356 57707410 57707030 2.120000e-73 287.0
32 TraesCS7B01G126400 chr7A 98.540 137 2 0 2182 2318 189434940 189435076 4.650000e-60 243.0
33 TraesCS7B01G126400 chr7A 93.506 77 5 0 2239 2315 190016178 190016254 1.060000e-21 115.0
34 TraesCS7B01G126400 chr4B 97.615 545 11 2 2460 3003 627048552 627048009 0.000000e+00 933.0
35 TraesCS7B01G126400 chr6B 93.287 581 36 3 4072 4650 183395072 183394493 0.000000e+00 854.0
36 TraesCS7B01G126400 chr6B 83.971 549 71 15 2460 3001 637877767 637877229 1.150000e-140 510.0
37 TraesCS7B01G126400 chr6B 94.855 311 12 4 2692 3001 203932583 203932890 2.520000e-132 483.0
38 TraesCS7B01G126400 chr6B 98.540 274 3 1 2734 3006 680300806 680301079 2.520000e-132 483.0
39 TraesCS7B01G126400 chr6B 94.855 311 12 4 2695 3004 695005590 695005283 2.520000e-132 483.0
40 TraesCS7B01G126400 chr1B 91.966 585 43 4 4069 4650 453208296 453207713 0.000000e+00 817.0
41 TraesCS7B01G126400 chr1B 88.851 583 61 4 4071 4650 97492999 97493580 0.000000e+00 713.0
42 TraesCS7B01G126400 chr1B 87.458 590 62 10 4071 4650 543593793 543594380 0.000000e+00 669.0
43 TraesCS7B01G126400 chr1D 89.932 586 56 3 4068 4650 97219702 97220287 0.000000e+00 752.0
44 TraesCS7B01G126400 chr1D 89.231 585 60 3 4069 4650 21634063 21634647 0.000000e+00 728.0
45 TraesCS7B01G126400 chr1D 85.495 586 79 6 4069 4650 131662162 131662745 1.430000e-169 606.0
46 TraesCS7B01G126400 chr1D 82.017 595 78 20 4071 4640 467040275 467040865 3.250000e-131 479.0
47 TraesCS7B01G126400 chr1D 77.453 581 114 17 4069 4640 3171174 3171746 9.640000e-87 331.0
48 TraesCS7B01G126400 chr2B 89.194 583 55 7 4071 4650 73956678 73956101 0.000000e+00 721.0
49 TraesCS7B01G126400 chr2B 86.823 554 39 20 2460 3001 635083607 635083076 5.180000e-164 588.0
50 TraesCS7B01G126400 chr2B 98.276 290 4 1 2448 2737 42262722 42262434 1.490000e-139 507.0
51 TraesCS7B01G126400 chr2B 81.323 514 88 7 2460 2970 640700033 640699525 1.200000e-110 411.0
52 TraesCS7B01G126400 chr1A 87.776 589 65 7 4060 4645 3584919 3585503 0.000000e+00 682.0
53 TraesCS7B01G126400 chr1A 82.540 189 25 5 1982 2169 300578107 300577926 4.820000e-35 159.0
54 TraesCS7B01G126400 chr6A 88.042 577 61 8 4069 4640 390575401 390575974 0.000000e+00 676.0
55 TraesCS7B01G126400 chr6A 82.692 156 22 5 4072 4224 614973868 614973715 2.920000e-27 134.0
56 TraesCS7B01G126400 chr2D 87.307 583 70 4 4066 4645 185187423 185186842 0.000000e+00 664.0
57 TraesCS7B01G126400 chr2D 85.542 581 79 5 4072 4649 52686385 52685807 1.850000e-168 603.0
58 TraesCS7B01G126400 chr2D 85.154 586 77 7 4069 4650 18698534 18699113 4.010000e-165 592.0
59 TraesCS7B01G126400 chr3D 85.430 604 81 7 4050 4649 302009132 302008532 5.110000e-174 621.0
60 TraesCS7B01G126400 chr3D 80.597 335 54 9 1027 1354 555182564 555182234 9.990000e-62 248.0
61 TraesCS7B01G126400 chr6D 85.043 575 79 5 4070 4640 402054068 402054639 3.120000e-161 579.0
62 TraesCS7B01G126400 chr6D 78.388 583 102 23 4070 4640 169378139 169378709 1.590000e-94 357.0
63 TraesCS7B01G126400 chr5D 84.300 586 84 8 4068 4649 439289926 439289345 2.430000e-157 566.0
64 TraesCS7B01G126400 chr5D 86.207 174 24 0 1116 1289 379235143 379234970 6.140000e-44 189.0
65 TraesCS7B01G126400 chr4D 89.532 449 37 3 4070 4516 50031298 50030858 1.130000e-155 560.0
66 TraesCS7B01G126400 chr4D 83.966 580 87 5 4066 4640 399171920 399171342 6.800000e-153 551.0
67 TraesCS7B01G126400 chr4D 78.571 266 46 10 4062 4319 43361332 43361070 1.040000e-36 165.0
68 TraesCS7B01G126400 chr4D 80.128 156 27 4 4349 4502 233162431 233162278 3.800000e-21 113.0
69 TraesCS7B01G126400 chr4D 91.176 68 4 2 4066 4133 444518872 444518807 1.780000e-14 91.6
70 TraesCS7B01G126400 chr5A 98.639 294 3 1 2460 2752 696475251 696474958 1.920000e-143 520.0
71 TraesCS7B01G126400 chr5B 96.104 308 9 3 2460 2764 528371950 528372257 2.500000e-137 499.0
72 TraesCS7B01G126400 chr5B 83.951 243 36 3 1116 1355 454907972 454907730 3.620000e-56 230.0
73 TraesCS7B01G126400 chr3A 98.545 275 4 0 2727 3001 695744255 695743981 1.940000e-133 486.0
74 TraesCS7B01G126400 chr3A 81.493 335 51 9 1027 1354 692051389 692051059 9.920000e-67 265.0
75 TraesCS7B01G126400 chr3B 80.723 332 59 4 1027 1354 738279775 738279445 2.150000e-63 254.0
76 TraesCS7B01G126400 chrUn 79.402 301 58 4 4342 4640 293203305 293203007 4.710000e-50 209.0
77 TraesCS7B01G126400 chrUn 90.323 62 6 0 4067 4128 7548127 7548188 1.070000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G126400 chr7B 150539454 150544103 4649 True 8588.0 8588 100.000000 1 4650 1 chr7B.!!$R3 4649
1 TraesCS7B01G126400 chr7B 154366007 154366546 539 True 630.0 630 87.703000 2451 3001 1 chr7B.!!$R4 550
2 TraesCS7B01G126400 chr7B 150560801 150562254 1453 True 626.0 869 87.655000 1008 3658 2 chr7B.!!$R6 2650
3 TraesCS7B01G126400 chr7D 182323979 182327853 3874 True 1161.5 2660 94.239750 1 4068 4 chr7D.!!$R8 4067
4 TraesCS7B01G126400 chr7D 151695930 151696512 582 True 715.0 715 88.870000 4070 4650 1 chr7D.!!$R2 580
5 TraesCS7B01G126400 chr7D 312180007 312180591 584 True 686.0 686 87.863000 4067 4649 1 chr7D.!!$R4 582
6 TraesCS7B01G126400 chr7D 536143171 536143743 572 True 641.0 641 86.979000 4070 4640 1 chr7D.!!$R5 570
7 TraesCS7B01G126400 chr7D 213386601 213387174 573 False 638.0 638 86.783000 4069 4640 1 chr7D.!!$F2 571
8 TraesCS7B01G126400 chr7D 182332912 182334452 1540 True 609.0 830 86.261500 901 3658 2 chr7D.!!$R9 2757
9 TraesCS7B01G126400 chr7D 54200474 54201225 751 True 283.5 291 82.120500 978 1771 2 chr7D.!!$R6 793
10 TraesCS7B01G126400 chr7A 189433126 189438442 5316 False 1051.0 2239 92.313333 233 3878 3 chr7A.!!$F6 3645
11 TraesCS7B01G126400 chr7A 189332011 189332771 760 False 804.0 804 85.917000 1008 1771 1 chr7A.!!$F1 763
12 TraesCS7B01G126400 chr4B 627048009 627048552 543 True 933.0 933 97.615000 2460 3003 1 chr4B.!!$R1 543
13 TraesCS7B01G126400 chr6B 183394493 183395072 579 True 854.0 854 93.287000 4072 4650 1 chr6B.!!$R1 578
14 TraesCS7B01G126400 chr6B 637877229 637877767 538 True 510.0 510 83.971000 2460 3001 1 chr6B.!!$R2 541
15 TraesCS7B01G126400 chr1B 453207713 453208296 583 True 817.0 817 91.966000 4069 4650 1 chr1B.!!$R1 581
16 TraesCS7B01G126400 chr1B 97492999 97493580 581 False 713.0 713 88.851000 4071 4650 1 chr1B.!!$F1 579
17 TraesCS7B01G126400 chr1B 543593793 543594380 587 False 669.0 669 87.458000 4071 4650 1 chr1B.!!$F2 579
18 TraesCS7B01G126400 chr1D 97219702 97220287 585 False 752.0 752 89.932000 4068 4650 1 chr1D.!!$F3 582
19 TraesCS7B01G126400 chr1D 21634063 21634647 584 False 728.0 728 89.231000 4069 4650 1 chr1D.!!$F2 581
20 TraesCS7B01G126400 chr1D 131662162 131662745 583 False 606.0 606 85.495000 4069 4650 1 chr1D.!!$F4 581
21 TraesCS7B01G126400 chr1D 467040275 467040865 590 False 479.0 479 82.017000 4071 4640 1 chr1D.!!$F5 569
22 TraesCS7B01G126400 chr1D 3171174 3171746 572 False 331.0 331 77.453000 4069 4640 1 chr1D.!!$F1 571
23 TraesCS7B01G126400 chr2B 73956101 73956678 577 True 721.0 721 89.194000 4071 4650 1 chr2B.!!$R2 579
24 TraesCS7B01G126400 chr2B 635083076 635083607 531 True 588.0 588 86.823000 2460 3001 1 chr2B.!!$R3 541
25 TraesCS7B01G126400 chr2B 640699525 640700033 508 True 411.0 411 81.323000 2460 2970 1 chr2B.!!$R4 510
26 TraesCS7B01G126400 chr1A 3584919 3585503 584 False 682.0 682 87.776000 4060 4645 1 chr1A.!!$F1 585
27 TraesCS7B01G126400 chr6A 390575401 390575974 573 False 676.0 676 88.042000 4069 4640 1 chr6A.!!$F1 571
28 TraesCS7B01G126400 chr2D 185186842 185187423 581 True 664.0 664 87.307000 4066 4645 1 chr2D.!!$R2 579
29 TraesCS7B01G126400 chr2D 52685807 52686385 578 True 603.0 603 85.542000 4072 4649 1 chr2D.!!$R1 577
30 TraesCS7B01G126400 chr2D 18698534 18699113 579 False 592.0 592 85.154000 4069 4650 1 chr2D.!!$F1 581
31 TraesCS7B01G126400 chr3D 302008532 302009132 600 True 621.0 621 85.430000 4050 4649 1 chr3D.!!$R1 599
32 TraesCS7B01G126400 chr6D 402054068 402054639 571 False 579.0 579 85.043000 4070 4640 1 chr6D.!!$F2 570
33 TraesCS7B01G126400 chr6D 169378139 169378709 570 False 357.0 357 78.388000 4070 4640 1 chr6D.!!$F1 570
34 TraesCS7B01G126400 chr5D 439289345 439289926 581 True 566.0 566 84.300000 4068 4649 1 chr5D.!!$R2 581
35 TraesCS7B01G126400 chr4D 399171342 399171920 578 True 551.0 551 83.966000 4066 4640 1 chr4D.!!$R4 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 892 0.038801 TGACTGCTCAAGCGACTCAG 60.039 55.0 0.0 0.0 45.83 3.35 F
995 1068 0.043485 GGGGAAAGAGAGAGGGAGGT 59.957 60.0 0.0 0.0 0.00 3.85 F
2169 2353 0.108963 CGTGAACCAAACACCCCCTA 59.891 55.0 0.0 0.0 35.17 3.53 F
3016 4150 0.105039 GCCTTACTCCAGATCACGGG 59.895 60.0 0.0 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2334 0.108963 TAGGGGGTGTTTGGTTCACG 59.891 55.0 0.00 0.00 36.76 4.35 R
2438 3544 0.466922 ACCAGCCTAAGATGCATGGC 60.467 55.0 16.09 16.09 45.21 4.40 R
3226 4394 0.179029 AACTCGGTGGACCAGGTTTG 60.179 55.0 0.00 0.00 35.14 2.93 R
4019 6628 0.749818 TGCGTCCAGGAACAAAAGCA 60.750 50.0 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.755008 ACCGACTAGGAGGAGCAGC 60.755 63.158 12.01 0.00 45.00 5.25
19 20 1.454847 CCGACTAGGAGGAGCAGCT 60.455 63.158 0.00 0.00 45.00 4.24
20 21 0.179015 CCGACTAGGAGGAGCAGCTA 60.179 60.000 0.00 0.00 45.00 3.32
21 22 0.948678 CGACTAGGAGGAGCAGCTAC 59.051 60.000 0.00 0.00 0.00 3.58
24 25 1.286553 ACTAGGAGGAGCAGCTACTGT 59.713 52.381 13.60 0.00 33.43 3.55
25 26 2.291930 ACTAGGAGGAGCAGCTACTGTT 60.292 50.000 13.60 1.91 33.43 3.16
36 37 1.063806 GCTACTGTTGCTCGTGAGTG 58.936 55.000 6.98 0.00 0.00 3.51
59 60 1.436336 CCCTACGCCTACCTCAACG 59.564 63.158 0.00 0.00 0.00 4.10
66 67 1.405821 CGCCTACCTCAACGATCTCTT 59.594 52.381 0.00 0.00 0.00 2.85
67 68 2.796383 CGCCTACCTCAACGATCTCTTG 60.796 54.545 0.00 0.00 0.00 3.02
105 106 4.650734 AGGAGCAAGAAAGGAAGAAGAAG 58.349 43.478 0.00 0.00 0.00 2.85
121 122 2.248248 AGAAGAGGACCATGACAACGA 58.752 47.619 0.00 0.00 0.00 3.85
122 123 2.028930 AGAAGAGGACCATGACAACGAC 60.029 50.000 0.00 0.00 0.00 4.34
146 147 1.324134 GAGGACGAAGACTAGACGACG 59.676 57.143 0.00 4.70 0.00 5.12
165 166 0.249398 GCCGACCCTGACAAGTGTAT 59.751 55.000 0.00 0.00 0.00 2.29
172 173 3.055819 ACCCTGACAAGTGTATGTAGCAG 60.056 47.826 0.00 0.00 32.57 4.24
199 200 5.138125 AGGTAGCAATGTTGTTGGAAATG 57.862 39.130 0.00 0.00 0.00 2.32
202 203 3.641648 AGCAATGTTGTTGGAAATGTCG 58.358 40.909 0.00 0.00 0.00 4.35
207 208 6.561350 GCAATGTTGTTGGAAATGTCGTTAAC 60.561 38.462 0.00 0.00 0.00 2.01
211 212 6.038825 TGTTGTTGGAAATGTCGTTAACTCAT 59.961 34.615 3.71 5.78 0.00 2.90
245 246 0.244450 ACGATGCATTTTGGCCACTG 59.756 50.000 3.88 4.63 0.00 3.66
260 261 4.350816 TGGCCACTGAATATAGGTGCTATT 59.649 41.667 0.00 0.00 0.00 1.73
311 312 7.829211 TGGTTAGATTATTGAGCTTAAAGTGCT 59.171 33.333 0.00 0.00 44.24 4.40
332 333 7.552687 AGTGCTCCTACAAAATCGATGAAAATA 59.447 33.333 0.00 0.00 0.00 1.40
335 336 8.778358 GCTCCTACAAAATCGATGAAAATAGAT 58.222 33.333 0.00 0.00 0.00 1.98
406 414 1.819288 CGTCGCCACCTCCATATCTAT 59.181 52.381 0.00 0.00 0.00 1.98
418 428 7.816513 CACCTCCATATCTATGTGTTATGACAG 59.183 40.741 0.00 0.00 36.20 3.51
422 432 6.091849 CCATATCTATGTGTTATGACAGCTGC 59.908 42.308 15.27 7.45 36.20 5.25
431 441 4.202253 TGTTATGACAGCTGCCGATATTCT 60.202 41.667 15.27 0.00 0.00 2.40
432 442 2.515926 TGACAGCTGCCGATATTCTC 57.484 50.000 15.27 0.46 0.00 2.87
440 450 6.097412 ACAGCTGCCGATATTCTCATATGATA 59.903 38.462 15.27 0.00 0.00 2.15
446 456 9.408648 TGCCGATATTCTCATATGATAACTCTA 57.591 33.333 5.72 0.00 0.00 2.43
468 478 3.560068 ACTGGAGTTGTTTTTGCTACGAG 59.440 43.478 0.00 0.00 0.00 4.18
478 488 6.432107 TGTTTTTGCTACGAGGTTTCAATAC 58.568 36.000 0.00 0.00 0.00 1.89
481 491 6.476243 TTTGCTACGAGGTTTCAATACTTC 57.524 37.500 0.00 0.00 0.00 3.01
494 504 3.119101 TCAATACTTCTGCCGACTCTTCC 60.119 47.826 0.00 0.00 0.00 3.46
516 526 0.317479 AGCTGGTCTTACACGTCACC 59.683 55.000 0.00 0.00 0.00 4.02
532 542 1.985159 TCACCACTGGTTTAGCTCCAT 59.015 47.619 0.00 0.00 31.02 3.41
612 630 2.446341 CCGAGCTCACGGTTTTCTC 58.554 57.895 15.40 0.00 46.70 2.87
681 705 5.527582 ACAGAAAACGTTACTTCAGCTGATT 59.472 36.000 19.04 10.42 0.00 2.57
717 741 2.920490 GCACAACTGCAAACGAGAAAAA 59.080 40.909 0.00 0.00 43.62 1.94
726 750 0.728542 AACGAGAAAAACCGTTGCGT 59.271 45.000 0.00 0.00 45.73 5.24
775 799 1.066502 TGTCGCATAGCAACAGCCTAA 60.067 47.619 0.00 0.00 0.00 2.69
805 829 2.677003 AAAATCGTCACGCCAGCCG 61.677 57.895 0.00 0.00 44.21 5.52
829 853 2.355837 CGGCGTGTACACAGCACT 60.356 61.111 29.99 0.00 34.91 4.40
830 854 1.954146 CGGCGTGTACACAGCACTT 60.954 57.895 29.99 0.00 34.91 3.16
849 892 0.038801 TGACTGCTCAAGCGACTCAG 60.039 55.000 0.00 0.00 45.83 3.35
855 922 1.423395 CTCAAGCGACTCAGGTCAAC 58.577 55.000 0.00 0.00 42.21 3.18
995 1068 0.043485 GGGGAAAGAGAGAGGGAGGT 59.957 60.000 0.00 0.00 0.00 3.85
1361 1472 2.046892 CCCTCAAGGTGAGCCACG 60.047 66.667 0.00 0.00 42.98 4.94
1431 1561 2.757314 TGGAGCTGACTGTGTGATCTAG 59.243 50.000 0.00 0.00 0.00 2.43
1606 1736 4.736896 GACGTGGAGGCGTGGGTC 62.737 72.222 0.00 0.00 45.79 4.46
1624 1754 4.462394 CGGATGATGCGGGTGAAT 57.538 55.556 0.00 0.00 0.00 2.57
1779 1910 1.134487 CCAAACGGTACTGCATGCG 59.866 57.895 14.09 10.50 0.00 4.73
1808 1943 6.245115 TCTTGTCAATTTCACTGCACATAG 57.755 37.500 0.00 0.00 0.00 2.23
1809 1944 5.764686 TCTTGTCAATTTCACTGCACATAGT 59.235 36.000 0.00 0.00 0.00 2.12
1810 1945 6.934083 TCTTGTCAATTTCACTGCACATAGTA 59.066 34.615 0.00 0.00 0.00 1.82
1811 1946 6.480524 TGTCAATTTCACTGCACATAGTAC 57.519 37.500 0.00 0.00 0.00 2.73
1812 1947 6.230472 TGTCAATTTCACTGCACATAGTACT 58.770 36.000 0.00 0.00 0.00 2.73
1813 1948 7.382898 TGTCAATTTCACTGCACATAGTACTA 58.617 34.615 4.77 4.77 0.00 1.82
1814 1949 7.545615 TGTCAATTTCACTGCACATAGTACTAG 59.454 37.037 8.85 3.62 0.00 2.57
1815 1950 7.545965 GTCAATTTCACTGCACATAGTACTAGT 59.454 37.037 8.85 0.00 0.00 2.57
1816 1951 8.745590 TCAATTTCACTGCACATAGTACTAGTA 58.254 33.333 8.85 0.00 0.00 1.82
1817 1952 9.534565 CAATTTCACTGCACATAGTACTAGTAT 57.465 33.333 5.75 0.00 0.00 2.12
1839 1974 4.569719 ACGTATCTTGGATTCTTGGGTT 57.430 40.909 0.00 0.00 0.00 4.11
1883 2019 3.788616 TTGGTTTGCGCTTGCTGCC 62.789 57.895 9.73 3.00 40.12 4.85
1949 2098 5.245977 TGGTCATCATGTTCTTGACTCTGTA 59.754 40.000 15.24 2.45 39.70 2.74
1950 2099 5.578727 GGTCATCATGTTCTTGACTCTGTAC 59.421 44.000 15.24 0.00 39.70 2.90
1974 2158 5.061684 CGTCTGTGTGATGTTATTCGCTTTA 59.938 40.000 0.00 0.00 0.00 1.85
1975 2159 6.470160 GTCTGTGTGATGTTATTCGCTTTAG 58.530 40.000 0.00 0.00 0.00 1.85
1979 2163 5.350365 GTGTGATGTTATTCGCTTTAGTCCA 59.650 40.000 0.00 0.00 0.00 4.02
1980 2164 6.037172 GTGTGATGTTATTCGCTTTAGTCCAT 59.963 38.462 0.00 0.00 0.00 3.41
1981 2165 6.037062 TGTGATGTTATTCGCTTTAGTCCATG 59.963 38.462 0.00 0.00 0.00 3.66
1982 2166 5.527214 TGATGTTATTCGCTTTAGTCCATGG 59.473 40.000 4.97 4.97 0.00 3.66
1983 2167 4.196193 TGTTATTCGCTTTAGTCCATGGG 58.804 43.478 13.02 0.00 0.00 4.00
1984 2168 2.348411 ATTCGCTTTAGTCCATGGGG 57.652 50.000 13.02 0.00 0.00 4.96
1986 2170 0.251916 TCGCTTTAGTCCATGGGGTG 59.748 55.000 13.02 2.87 34.93 4.61
1988 2172 1.613255 CGCTTTAGTCCATGGGGTGTT 60.613 52.381 13.02 0.00 34.93 3.32
1990 2174 2.231235 GCTTTAGTCCATGGGGTGTTTG 59.769 50.000 13.02 0.00 34.93 2.93
1991 2175 2.595750 TTAGTCCATGGGGTGTTTGG 57.404 50.000 13.02 0.00 34.93 3.28
1992 2176 1.451449 TAGTCCATGGGGTGTTTGGT 58.549 50.000 13.02 0.00 34.93 3.67
1995 2179 0.538516 TCCATGGGGTGTTTGGTTCG 60.539 55.000 13.02 0.00 34.93 3.95
1996 2180 1.531739 CCATGGGGTGTTTGGTTCGG 61.532 60.000 2.85 0.00 0.00 4.30
1997 2181 0.538516 CATGGGGTGTTTGGTTCGGA 60.539 55.000 0.00 0.00 0.00 4.55
1998 2182 0.186386 ATGGGGTGTTTGGTTCGGAA 59.814 50.000 0.00 0.00 0.00 4.30
1999 2183 0.466555 TGGGGTGTTTGGTTCGGAAG 60.467 55.000 0.00 0.00 0.00 3.46
2000 2184 0.466739 GGGGTGTTTGGTTCGGAAGT 60.467 55.000 0.00 0.00 0.00 3.01
2001 2185 0.949397 GGGTGTTTGGTTCGGAAGTC 59.051 55.000 0.00 0.00 0.00 3.01
2004 2188 2.224354 GGTGTTTGGTTCGGAAGTCCTA 60.224 50.000 0.00 0.00 0.00 2.94
2005 2189 3.064931 GTGTTTGGTTCGGAAGTCCTAG 58.935 50.000 0.00 0.00 0.00 3.02
2006 2190 2.038033 TGTTTGGTTCGGAAGTCCTAGG 59.962 50.000 0.82 0.82 0.00 3.02
2007 2191 2.301009 GTTTGGTTCGGAAGTCCTAGGA 59.699 50.000 7.62 7.62 0.00 2.94
2027 2211 3.927854 GACTGTTTCTAGTCCCAGGAAC 58.072 50.000 0.00 0.00 40.92 3.62
2028 2212 3.579151 GACTGTTTCTAGTCCCAGGAACT 59.421 47.826 0.00 0.00 40.92 3.01
2029 2213 4.748701 ACTGTTTCTAGTCCCAGGAACTA 58.251 43.478 0.00 0.00 35.39 2.24
2030 2214 5.152934 ACTGTTTCTAGTCCCAGGAACTAA 58.847 41.667 0.00 0.00 35.39 2.24
2031 2215 5.785940 ACTGTTTCTAGTCCCAGGAACTAAT 59.214 40.000 0.00 0.00 35.39 1.73
2032 2216 6.070710 ACTGTTTCTAGTCCCAGGAACTAATC 60.071 42.308 0.00 0.00 35.39 1.75
2033 2217 5.783360 TGTTTCTAGTCCCAGGAACTAATCA 59.217 40.000 0.00 0.00 35.39 2.57
2034 2218 5.934402 TTCTAGTCCCAGGAACTAATCAC 57.066 43.478 0.00 0.00 36.02 3.06
2035 2219 4.942944 TCTAGTCCCAGGAACTAATCACA 58.057 43.478 0.00 0.00 36.02 3.58
2036 2220 3.983044 AGTCCCAGGAACTAATCACAC 57.017 47.619 0.00 0.00 36.02 3.82
2037 2221 3.521727 AGTCCCAGGAACTAATCACACT 58.478 45.455 0.00 0.00 36.02 3.55
2038 2222 4.684724 AGTCCCAGGAACTAATCACACTA 58.315 43.478 0.00 0.00 36.02 2.74
2039 2223 4.712337 AGTCCCAGGAACTAATCACACTAG 59.288 45.833 0.00 0.00 36.02 2.57
2040 2224 4.466726 GTCCCAGGAACTAATCACACTAGT 59.533 45.833 0.00 0.00 36.02 2.57
2041 2225 4.710375 TCCCAGGAACTAATCACACTAGTC 59.290 45.833 0.00 0.00 36.02 2.59
2042 2226 4.712337 CCCAGGAACTAATCACACTAGTCT 59.288 45.833 0.00 0.00 36.02 3.24
2043 2227 5.187967 CCCAGGAACTAATCACACTAGTCTT 59.812 44.000 0.00 0.00 36.02 3.01
2044 2228 6.295916 CCCAGGAACTAATCACACTAGTCTTT 60.296 42.308 0.00 0.00 36.02 2.52
2045 2229 7.162082 CCAGGAACTAATCACACTAGTCTTTT 58.838 38.462 0.00 0.00 36.02 2.27
2046 2230 7.661847 CCAGGAACTAATCACACTAGTCTTTTT 59.338 37.037 0.00 0.00 36.02 1.94
2047 2231 8.713271 CAGGAACTAATCACACTAGTCTTTTTC 58.287 37.037 0.00 0.00 36.02 2.29
2048 2232 8.429641 AGGAACTAATCACACTAGTCTTTTTCA 58.570 33.333 0.00 0.00 36.02 2.69
2049 2233 9.220767 GGAACTAATCACACTAGTCTTTTTCAT 57.779 33.333 0.00 0.00 0.00 2.57
2101 2285 4.652679 AAAAAGTCCCTCCCGTTAGATT 57.347 40.909 0.00 0.00 0.00 2.40
2102 2286 4.652679 AAAAGTCCCTCCCGTTAGATTT 57.347 40.909 0.00 0.00 0.00 2.17
2103 2287 3.908643 AAGTCCCTCCCGTTAGATTTC 57.091 47.619 0.00 0.00 0.00 2.17
2104 2288 3.117552 AGTCCCTCCCGTTAGATTTCT 57.882 47.619 0.00 0.00 0.00 2.52
2105 2289 4.261411 AGTCCCTCCCGTTAGATTTCTA 57.739 45.455 0.00 0.00 0.00 2.10
2106 2290 4.216708 AGTCCCTCCCGTTAGATTTCTAG 58.783 47.826 0.00 0.00 0.00 2.43
2107 2291 3.321396 GTCCCTCCCGTTAGATTTCTAGG 59.679 52.174 0.00 0.00 0.00 3.02
2108 2292 3.205959 TCCCTCCCGTTAGATTTCTAGGA 59.794 47.826 0.00 0.00 0.00 2.94
2109 2293 3.965347 CCCTCCCGTTAGATTTCTAGGAA 59.035 47.826 0.00 0.00 0.00 3.36
2110 2294 4.593634 CCCTCCCGTTAGATTTCTAGGAAT 59.406 45.833 0.00 0.00 0.00 3.01
2111 2295 5.071923 CCCTCCCGTTAGATTTCTAGGAATT 59.928 44.000 0.00 0.00 0.00 2.17
2112 2296 6.409349 CCCTCCCGTTAGATTTCTAGGAATTT 60.409 42.308 0.00 0.00 0.00 1.82
2113 2297 7.054751 CCTCCCGTTAGATTTCTAGGAATTTT 58.945 38.462 0.00 0.00 0.00 1.82
2114 2298 7.556635 CCTCCCGTTAGATTTCTAGGAATTTTT 59.443 37.037 0.00 0.00 0.00 1.94
2148 2332 8.445361 TTTTCTAGTATCTGGGACTAAAAGGT 57.555 34.615 0.00 0.00 0.00 3.50
2149 2333 7.657023 TTCTAGTATCTGGGACTAAAAGGTC 57.343 40.000 0.00 0.00 35.66 3.85
2157 2341 2.420642 GGACTAAAAGGTCCGTGAACC 58.579 52.381 0.00 0.00 44.94 3.62
2158 2342 2.224354 GGACTAAAAGGTCCGTGAACCA 60.224 50.000 0.00 0.00 44.94 3.67
2159 2343 3.469739 GACTAAAAGGTCCGTGAACCAA 58.530 45.455 2.23 0.00 42.12 3.67
2160 2344 3.878699 GACTAAAAGGTCCGTGAACCAAA 59.121 43.478 2.23 0.00 42.12 3.28
2161 2345 3.628942 ACTAAAAGGTCCGTGAACCAAAC 59.371 43.478 2.23 0.00 42.12 2.93
2162 2346 2.131776 AAAGGTCCGTGAACCAAACA 57.868 45.000 2.23 0.00 42.12 2.83
2163 2347 1.385528 AAGGTCCGTGAACCAAACAC 58.614 50.000 2.23 0.00 42.12 3.32
2164 2348 0.464916 AGGTCCGTGAACCAAACACC 60.465 55.000 0.00 0.00 42.12 4.16
2165 2349 1.449726 GGTCCGTGAACCAAACACCC 61.450 60.000 0.00 0.00 39.27 4.61
2166 2350 1.152922 TCCGTGAACCAAACACCCC 60.153 57.895 0.00 0.00 35.17 4.95
2167 2351 2.197605 CCGTGAACCAAACACCCCC 61.198 63.158 0.00 0.00 35.17 5.40
2168 2352 1.152839 CGTGAACCAAACACCCCCT 60.153 57.895 0.00 0.00 35.17 4.79
2169 2353 0.108963 CGTGAACCAAACACCCCCTA 59.891 55.000 0.00 0.00 35.17 3.53
2170 2354 1.271707 CGTGAACCAAACACCCCCTAT 60.272 52.381 0.00 0.00 35.17 2.57
2171 2355 2.027007 CGTGAACCAAACACCCCCTATA 60.027 50.000 0.00 0.00 35.17 1.31
2331 3400 0.108992 TAAGCACACGTGATCGACCC 60.109 55.000 25.01 1.87 40.62 4.46
2354 3423 4.212214 CCACTGTCCTCGAGAAAGAAAAAG 59.788 45.833 15.71 4.45 33.53 2.27
2418 3524 6.265196 TGTTTTACTCCCTCGACTAGTTTACA 59.735 38.462 0.00 0.00 0.00 2.41
2523 3629 7.459795 TGTCACATAAGCAAAATTGGTGATA 57.540 32.000 0.00 0.00 39.13 2.15
2792 3898 6.979817 GCCACATAAGCAAAAATGATGATGTA 59.020 34.615 0.00 0.00 0.00 2.29
3003 4137 1.141053 CCCCACTATGACCAGCCTTAC 59.859 57.143 0.00 0.00 0.00 2.34
3004 4138 2.119495 CCCACTATGACCAGCCTTACT 58.881 52.381 0.00 0.00 0.00 2.24
3005 4139 2.103263 CCCACTATGACCAGCCTTACTC 59.897 54.545 0.00 0.00 0.00 2.59
3006 4140 2.103263 CCACTATGACCAGCCTTACTCC 59.897 54.545 0.00 0.00 0.00 3.85
3007 4141 2.766263 CACTATGACCAGCCTTACTCCA 59.234 50.000 0.00 0.00 0.00 3.86
3008 4142 3.034635 ACTATGACCAGCCTTACTCCAG 58.965 50.000 0.00 0.00 0.00 3.86
3009 4143 2.254152 ATGACCAGCCTTACTCCAGA 57.746 50.000 0.00 0.00 0.00 3.86
3010 4144 2.254152 TGACCAGCCTTACTCCAGAT 57.746 50.000 0.00 0.00 0.00 2.90
3011 4145 2.111384 TGACCAGCCTTACTCCAGATC 58.889 52.381 0.00 0.00 0.00 2.75
3012 4146 2.111384 GACCAGCCTTACTCCAGATCA 58.889 52.381 0.00 0.00 0.00 2.92
3013 4147 1.834263 ACCAGCCTTACTCCAGATCAC 59.166 52.381 0.00 0.00 0.00 3.06
3014 4148 1.202463 CCAGCCTTACTCCAGATCACG 60.202 57.143 0.00 0.00 0.00 4.35
3015 4149 1.115467 AGCCTTACTCCAGATCACGG 58.885 55.000 0.00 0.00 0.00 4.94
3016 4150 0.105039 GCCTTACTCCAGATCACGGG 59.895 60.000 0.00 0.00 0.00 5.28
3017 4151 1.486211 CCTTACTCCAGATCACGGGT 58.514 55.000 0.00 0.00 33.25 5.28
3018 4152 2.662866 CCTTACTCCAGATCACGGGTA 58.337 52.381 0.00 0.00 33.25 3.69
3019 4153 2.361438 CCTTACTCCAGATCACGGGTAC 59.639 54.545 0.00 0.00 33.25 3.34
3020 4154 3.288964 CTTACTCCAGATCACGGGTACT 58.711 50.000 0.00 0.00 33.25 2.73
3021 4155 4.458397 CTTACTCCAGATCACGGGTACTA 58.542 47.826 0.00 0.00 33.25 1.82
3022 4156 2.933573 ACTCCAGATCACGGGTACTAG 58.066 52.381 0.00 0.00 33.25 2.57
3023 4157 2.241685 ACTCCAGATCACGGGTACTAGT 59.758 50.000 0.00 0.00 33.25 2.57
3024 4158 3.457380 ACTCCAGATCACGGGTACTAGTA 59.543 47.826 0.00 0.00 33.25 1.82
3025 4159 4.080129 ACTCCAGATCACGGGTACTAGTAA 60.080 45.833 3.61 0.00 33.25 2.24
3026 4160 4.858850 TCCAGATCACGGGTACTAGTAAA 58.141 43.478 3.61 0.00 33.25 2.01
3027 4161 5.452255 TCCAGATCACGGGTACTAGTAAAT 58.548 41.667 3.61 0.00 33.25 1.40
3028 4162 5.301045 TCCAGATCACGGGTACTAGTAAATG 59.699 44.000 3.61 1.29 33.25 2.32
3029 4163 5.068723 CCAGATCACGGGTACTAGTAAATGT 59.931 44.000 3.61 0.34 0.00 2.71
3030 4164 6.406624 CCAGATCACGGGTACTAGTAAATGTT 60.407 42.308 3.61 0.00 0.00 2.71
3031 4165 6.696148 CAGATCACGGGTACTAGTAAATGTTC 59.304 42.308 3.61 5.76 0.00 3.18
3032 4166 5.981088 TCACGGGTACTAGTAAATGTTCA 57.019 39.130 3.61 0.00 0.00 3.18
3072 4206 1.300931 GAAGCTCTGCACACCGACA 60.301 57.895 0.00 0.00 0.00 4.35
3106 4240 0.802494 AAGGCCGCGTTGATTACAAG 59.198 50.000 4.92 0.00 36.64 3.16
3124 4258 2.464459 GCATGGAAGAACCGCCGAG 61.464 63.158 0.00 0.00 42.61 4.63
3127 4261 1.068588 CATGGAAGAACCGCCGAGATA 59.931 52.381 0.00 0.00 42.61 1.98
3163 4331 8.515414 ACTCGATGATCTATTTATTGATCGTGA 58.485 33.333 11.75 9.26 40.40 4.35
3193 4361 5.013079 ACAGAGGTTGTTGGAACATGATCTA 59.987 40.000 0.00 0.00 39.30 1.98
3194 4362 5.352569 CAGAGGTTGTTGGAACATGATCTAC 59.647 44.000 0.00 0.84 39.30 2.59
3195 4363 5.249393 AGAGGTTGTTGGAACATGATCTACT 59.751 40.000 0.00 0.00 39.30 2.57
3199 4367 6.407202 GTTGTTGGAACATGATCTACTACCT 58.593 40.000 0.00 0.00 39.30 3.08
3226 4394 1.666311 CGGTCGTCAGAGAGTTGGTTC 60.666 57.143 0.00 0.00 0.00 3.62
3252 4420 2.359850 TCCACCGAGTTGCATGCC 60.360 61.111 16.68 0.00 0.00 4.40
3261 4429 3.457234 CGAGTTGCATGCCAGACTATAA 58.543 45.455 16.68 0.00 0.00 0.98
3273 4441 4.572795 GCCAGACTATAAAACTCTTCAGGC 59.427 45.833 0.00 0.00 0.00 4.85
3275 4443 5.582665 CCAGACTATAAAACTCTTCAGGCAC 59.417 44.000 0.00 0.00 0.00 5.01
3276 4444 6.402222 CAGACTATAAAACTCTTCAGGCACT 58.598 40.000 0.00 0.00 43.88 4.40
3278 4446 7.704472 CAGACTATAAAACTCTTCAGGCACTAG 59.296 40.741 0.00 0.00 36.02 2.57
3279 4447 6.879400 ACTATAAAACTCTTCAGGCACTAGG 58.121 40.000 0.00 0.00 36.02 3.02
3280 4448 3.425162 AAAACTCTTCAGGCACTAGGG 57.575 47.619 0.00 0.00 36.02 3.53
3282 4450 2.559381 ACTCTTCAGGCACTAGGGAT 57.441 50.000 0.00 0.00 36.02 3.85
3698 6303 3.724508 TTGTGTTGGTGCATACTTTGG 57.275 42.857 0.00 0.00 0.00 3.28
3729 6337 8.703604 AGTACTGTGTATGATTTGACATGTAC 57.296 34.615 0.00 0.00 37.92 2.90
3730 6338 8.531982 AGTACTGTGTATGATTTGACATGTACT 58.468 33.333 0.00 13.23 40.17 2.73
3731 6339 9.797556 GTACTGTGTATGATTTGACATGTACTA 57.202 33.333 0.00 0.00 36.51 1.82
3739 6347 8.883954 ATGATTTGACATGTACTATCTGTGAG 57.116 34.615 0.00 0.00 0.00 3.51
3796 6404 1.974236 AGCTGATGCCTACCTGTATCC 59.026 52.381 0.00 0.00 40.80 2.59
3797 6405 1.694150 GCTGATGCCTACCTGTATCCA 59.306 52.381 0.00 0.00 0.00 3.41
3799 6407 2.968574 CTGATGCCTACCTGTATCCACT 59.031 50.000 0.00 0.00 0.00 4.00
3871 6479 2.352503 ACGTCAATGCCAAGCAAATC 57.647 45.000 0.00 0.00 43.62 2.17
3894 6502 4.384208 CGACTTCTTACCAGGGATCCAAAT 60.384 45.833 15.23 0.00 0.00 2.32
3895 6503 5.510430 GACTTCTTACCAGGGATCCAAATT 58.490 41.667 15.23 0.00 0.00 1.82
3900 6508 7.039722 TCTTACCAGGGATCCAAATTAGTTT 57.960 36.000 15.23 0.00 0.00 2.66
3904 6512 6.980577 ACCAGGGATCCAAATTAGTTTATCA 58.019 36.000 15.23 0.00 0.00 2.15
3924 6532 1.075601 ATTGAAGGCCAGACAAGGGA 58.924 50.000 5.01 0.00 0.00 4.20
3929 6537 1.075601 AGGCCAGACAAGGGATTTCA 58.924 50.000 5.01 0.00 0.00 2.69
3943 6551 6.293004 AGGGATTTCACTTGTGAAAACAAA 57.707 33.333 25.99 9.44 40.60 2.83
3947 6555 6.538381 GGATTTCACTTGTGAAAACAAACCAT 59.462 34.615 25.99 11.95 40.60 3.55
3964 6572 7.155328 ACAAACCATTGTCTTTTAACACAACA 58.845 30.769 0.00 0.00 46.78 3.33
3970 6578 8.716909 CCATTGTCTTTTAACACAACACTTTTT 58.283 29.630 0.00 0.00 35.37 1.94
3989 6598 1.870941 TTCCCTCCCCGAGCTGACTA 61.871 60.000 0.00 0.00 0.00 2.59
4019 6628 6.119240 TGAAAGTCATCCTCAACTCAATCT 57.881 37.500 0.00 0.00 0.00 2.40
4196 6818 5.492855 ACCACACAGGCTAAAGTATAACA 57.507 39.130 0.00 0.00 43.14 2.41
4378 7020 6.903534 TCCTCCTTAGTCAATAATCTCCACTT 59.096 38.462 0.00 0.00 0.00 3.16
4473 7115 2.014857 TCCTTGTCGTCCATAGAGTCG 58.985 52.381 0.00 0.00 0.00 4.18
4535 7177 2.750350 CCAACCAGGTTCGAGGCT 59.250 61.111 0.12 0.00 0.00 4.58
4604 7246 3.994392 ACCACGATCTGATACAACAACAC 59.006 43.478 0.00 0.00 0.00 3.32
4645 7287 6.308766 ACACAATTGAAGAAAATATGCTTCGC 59.691 34.615 13.59 0.00 42.57 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.063806 GCACTCACGAGCAACAGTAG 58.936 55.000 0.00 0.00 0.00 2.57
19 20 0.663269 CGCACTCACGAGCAACAGTA 60.663 55.000 0.00 0.00 34.06 2.74
20 21 1.951130 CGCACTCACGAGCAACAGT 60.951 57.895 0.00 0.00 34.06 3.55
21 22 1.661509 TCGCACTCACGAGCAACAG 60.662 57.895 0.00 0.00 37.09 3.16
59 60 2.847201 CCCCCTCCTCCAAGAGATC 58.153 63.158 0.00 0.00 35.82 2.75
78 79 1.208165 TCCTTTCTTGCTCCTCCCCC 61.208 60.000 0.00 0.00 0.00 5.40
79 80 0.698818 TTCCTTTCTTGCTCCTCCCC 59.301 55.000 0.00 0.00 0.00 4.81
80 81 1.630878 TCTTCCTTTCTTGCTCCTCCC 59.369 52.381 0.00 0.00 0.00 4.30
85 86 4.694982 CCTCTTCTTCTTCCTTTCTTGCTC 59.305 45.833 0.00 0.00 0.00 4.26
88 89 5.000591 GGTCCTCTTCTTCTTCCTTTCTTG 58.999 45.833 0.00 0.00 0.00 3.02
93 94 4.019771 GTCATGGTCCTCTTCTTCTTCCTT 60.020 45.833 0.00 0.00 0.00 3.36
105 106 0.242825 TCGTCGTTGTCATGGTCCTC 59.757 55.000 0.00 0.00 0.00 3.71
121 122 1.554160 TCTAGTCTTCGTCCTCCTCGT 59.446 52.381 0.00 0.00 0.00 4.18
122 123 1.935199 GTCTAGTCTTCGTCCTCCTCG 59.065 57.143 0.00 0.00 0.00 4.63
146 147 0.249398 ATACACTTGTCAGGGTCGGC 59.751 55.000 0.00 0.00 37.94 5.54
230 231 4.341806 CCTATATTCAGTGGCCAAAATGCA 59.658 41.667 7.24 0.00 0.00 3.96
231 232 4.342092 ACCTATATTCAGTGGCCAAAATGC 59.658 41.667 7.24 0.00 0.00 3.56
260 261 6.569780 ACACGTGTATCAGCACAATAGATTA 58.430 36.000 21.98 0.00 39.19 1.75
271 272 3.581755 TCTAACCAACACGTGTATCAGC 58.418 45.455 23.69 0.00 0.00 4.26
341 342 3.135167 CCAAAATGGCTGCCTCCATATTT 59.865 43.478 21.03 13.51 45.64 1.40
392 400 7.670364 TGTCATAACACATAGATATGGAGGTG 58.330 38.462 4.93 0.00 38.00 4.00
397 405 6.091849 GCAGCTGTCATAACACATAGATATGG 59.908 42.308 16.64 0.00 38.00 2.74
406 414 0.320050 TCGGCAGCTGTCATAACACA 59.680 50.000 20.11 0.00 0.00 3.72
418 428 6.983307 AGTTATCATATGAGAATATCGGCAGC 59.017 38.462 15.40 0.57 0.00 5.25
446 456 3.537580 TCGTAGCAAAAACAACTCCAGT 58.462 40.909 0.00 0.00 0.00 4.00
449 459 2.876550 ACCTCGTAGCAAAAACAACTCC 59.123 45.455 0.00 0.00 0.00 3.85
456 466 6.870971 AGTATTGAAACCTCGTAGCAAAAA 57.129 33.333 0.00 0.00 0.00 1.94
462 472 4.567159 GGCAGAAGTATTGAAACCTCGTAG 59.433 45.833 0.00 0.00 0.00 3.51
468 478 3.335579 AGTCGGCAGAAGTATTGAAACC 58.664 45.455 0.00 0.00 0.00 3.27
478 488 0.891373 TCTGGAAGAGTCGGCAGAAG 59.109 55.000 0.00 0.00 38.67 2.85
494 504 1.269723 TGACGTGTAAGACCAGCTCTG 59.730 52.381 0.00 0.00 0.00 3.35
508 518 0.865769 GCTAAACCAGTGGTGACGTG 59.134 55.000 17.56 6.15 35.34 4.49
541 551 7.301054 AGATCACACATCAAAACGAAAAGATC 58.699 34.615 0.00 0.00 0.00 2.75
556 566 2.022195 GGCATGCTTGAGATCACACAT 58.978 47.619 18.92 0.00 0.00 3.21
597 607 1.270893 GGGAAGAGAAAACCGTGAGCT 60.271 52.381 0.00 0.00 0.00 4.09
599 609 2.613223 GGAGGGAAGAGAAAACCGTGAG 60.613 54.545 0.00 0.00 0.00 3.51
600 610 1.346722 GGAGGGAAGAGAAAACCGTGA 59.653 52.381 0.00 0.00 0.00 4.35
601 611 1.071699 TGGAGGGAAGAGAAAACCGTG 59.928 52.381 0.00 0.00 0.00 4.94
602 612 1.071857 GTGGAGGGAAGAGAAAACCGT 59.928 52.381 0.00 0.00 0.00 4.83
612 630 2.757868 TGTTTGTTGTTGTGGAGGGAAG 59.242 45.455 0.00 0.00 0.00 3.46
681 705 2.738139 TGCGTCGTACGAGGTCGA 60.738 61.111 31.38 17.45 46.05 4.20
717 741 0.948678 AACTTAATGCACGCAACGGT 59.051 45.000 0.00 0.00 0.00 4.83
726 750 2.163412 GCCATCCGAACAACTTAATGCA 59.837 45.455 0.00 0.00 0.00 3.96
775 799 2.238646 TGACGATTTTGGGCCTATCTGT 59.761 45.455 4.53 7.82 0.00 3.41
783 807 2.178273 GGCGTGACGATTTTGGGC 59.822 61.111 10.10 0.00 0.00 5.36
786 810 1.154225 GGCTGGCGTGACGATTTTG 60.154 57.895 10.10 0.00 0.00 2.44
805 829 1.203313 GTGTACACGCCGCTTTGAC 59.797 57.895 10.84 0.00 0.00 3.18
829 853 0.389025 TGAGTCGCTTGAGCAGTCAA 59.611 50.000 3.65 0.00 40.55 3.18
830 854 0.038801 CTGAGTCGCTTGAGCAGTCA 60.039 55.000 3.65 7.92 42.21 3.41
849 892 5.659971 TGTTTATCTAGGAGTAGGGTTGACC 59.340 44.000 0.00 0.00 40.67 4.02
855 922 5.808366 TGCATGTTTATCTAGGAGTAGGG 57.192 43.478 0.00 0.00 0.00 3.53
1431 1561 1.269998 AGTTGAGTCTACACCGTGAGC 59.730 52.381 5.28 0.00 0.00 4.26
1606 1736 1.227943 ATTCACCCGCATCATCCGG 60.228 57.895 0.00 0.00 45.17 5.14
1779 1910 4.702392 CAGTGAAATTGACAAGAGCGTAC 58.298 43.478 0.00 0.00 0.00 3.67
1810 1945 8.794553 CCAAGAATCCAAGATACGTATACTAGT 58.205 37.037 8.34 0.00 0.00 2.57
1811 1946 8.244802 CCCAAGAATCCAAGATACGTATACTAG 58.755 40.741 8.34 0.00 0.00 2.57
1812 1947 7.727186 ACCCAAGAATCCAAGATACGTATACTA 59.273 37.037 8.34 0.00 0.00 1.82
1813 1948 6.553852 ACCCAAGAATCCAAGATACGTATACT 59.446 38.462 8.34 4.98 0.00 2.12
1814 1949 6.756221 ACCCAAGAATCCAAGATACGTATAC 58.244 40.000 8.34 2.64 0.00 1.47
1815 1950 6.989155 ACCCAAGAATCCAAGATACGTATA 57.011 37.500 8.34 0.00 0.00 1.47
1816 1951 5.888982 ACCCAAGAATCCAAGATACGTAT 57.111 39.130 8.05 8.05 0.00 3.06
1817 1952 5.424757 CAACCCAAGAATCCAAGATACGTA 58.575 41.667 0.00 0.00 0.00 3.57
1818 1953 4.261801 CAACCCAAGAATCCAAGATACGT 58.738 43.478 0.00 0.00 0.00 3.57
1883 2019 7.636359 GCGCAATGAATTACTACAGTTAGAAAG 59.364 37.037 0.30 0.00 0.00 2.62
1949 2098 2.666508 GCGAATAACATCACACAGACGT 59.333 45.455 0.00 0.00 0.00 4.34
1950 2099 2.923655 AGCGAATAACATCACACAGACG 59.076 45.455 0.00 0.00 0.00 4.18
1974 2158 0.560688 AACCAAACACCCCATGGACT 59.439 50.000 15.22 0.00 37.66 3.85
1975 2159 0.966179 GAACCAAACACCCCATGGAC 59.034 55.000 15.22 0.00 37.66 4.02
1979 2163 0.186386 TTCCGAACCAAACACCCCAT 59.814 50.000 0.00 0.00 0.00 4.00
1980 2164 0.466555 CTTCCGAACCAAACACCCCA 60.467 55.000 0.00 0.00 0.00 4.96
1981 2165 0.466739 ACTTCCGAACCAAACACCCC 60.467 55.000 0.00 0.00 0.00 4.95
1982 2166 0.949397 GACTTCCGAACCAAACACCC 59.051 55.000 0.00 0.00 0.00 4.61
1983 2167 0.949397 GGACTTCCGAACCAAACACC 59.051 55.000 0.00 0.00 0.00 4.16
1984 2168 1.963172 AGGACTTCCGAACCAAACAC 58.037 50.000 0.00 0.00 42.08 3.32
1986 2170 2.301009 TCCTAGGACTTCCGAACCAAAC 59.699 50.000 7.62 0.00 42.08 2.93
1988 2172 1.897802 GTCCTAGGACTTCCGAACCAA 59.102 52.381 31.12 0.00 41.57 3.67
2006 2190 3.579151 AGTTCCTGGGACTAGAAACAGTC 59.421 47.826 5.64 0.00 43.55 3.51
2007 2191 3.588569 AGTTCCTGGGACTAGAAACAGT 58.411 45.455 5.64 0.00 0.00 3.55
2010 2194 6.107343 GTGATTAGTTCCTGGGACTAGAAAC 58.893 44.000 14.39 10.23 0.00 2.78
2011 2195 5.783360 TGTGATTAGTTCCTGGGACTAGAAA 59.217 40.000 14.39 3.24 0.00 2.52
2012 2196 5.187186 GTGTGATTAGTTCCTGGGACTAGAA 59.813 44.000 14.39 3.97 0.00 2.10
2013 2197 4.710375 GTGTGATTAGTTCCTGGGACTAGA 59.290 45.833 14.39 7.12 0.00 2.43
2014 2198 4.712337 AGTGTGATTAGTTCCTGGGACTAG 59.288 45.833 14.39 0.00 0.00 2.57
2015 2199 4.684724 AGTGTGATTAGTTCCTGGGACTA 58.315 43.478 10.94 10.94 0.00 2.59
2016 2200 3.521727 AGTGTGATTAGTTCCTGGGACT 58.478 45.455 13.27 13.27 0.00 3.85
2017 2201 3.983044 AGTGTGATTAGTTCCTGGGAC 57.017 47.619 0.00 0.00 0.00 4.46
2018 2202 4.684724 ACTAGTGTGATTAGTTCCTGGGA 58.315 43.478 0.00 0.00 0.00 4.37
2019 2203 4.712337 AGACTAGTGTGATTAGTTCCTGGG 59.288 45.833 0.00 0.00 31.74 4.45
2020 2204 5.923733 AGACTAGTGTGATTAGTTCCTGG 57.076 43.478 0.00 0.00 31.74 4.45
2021 2205 8.608844 AAAAAGACTAGTGTGATTAGTTCCTG 57.391 34.615 0.00 0.00 31.74 3.86
2022 2206 8.429641 TGAAAAAGACTAGTGTGATTAGTTCCT 58.570 33.333 0.00 0.00 31.74 3.36
2023 2207 8.603242 TGAAAAAGACTAGTGTGATTAGTTCC 57.397 34.615 0.00 0.00 31.74 3.62
2080 2264 4.652679 AATCTAACGGGAGGGACTTTTT 57.347 40.909 0.00 0.00 41.55 1.94
2081 2265 4.288887 AGAAATCTAACGGGAGGGACTTTT 59.711 41.667 0.00 0.00 41.55 2.27
2082 2266 3.844804 AGAAATCTAACGGGAGGGACTTT 59.155 43.478 0.00 0.00 41.55 2.66
2083 2267 3.451890 AGAAATCTAACGGGAGGGACTT 58.548 45.455 0.00 0.00 41.55 3.01
2085 2269 3.321396 CCTAGAAATCTAACGGGAGGGAC 59.679 52.174 0.00 0.00 0.00 4.46
2086 2270 3.205959 TCCTAGAAATCTAACGGGAGGGA 59.794 47.826 0.00 0.00 0.00 4.20
2087 2271 3.573695 TCCTAGAAATCTAACGGGAGGG 58.426 50.000 0.00 0.00 0.00 4.30
2088 2272 5.810080 ATTCCTAGAAATCTAACGGGAGG 57.190 43.478 0.00 0.00 0.00 4.30
2089 2273 8.507524 AAAAATTCCTAGAAATCTAACGGGAG 57.492 34.615 0.00 0.00 0.00 4.30
2122 2306 8.887393 ACCTTTTAGTCCCAGATACTAGAAAAA 58.113 33.333 0.00 0.00 31.37 1.94
2123 2307 8.445361 ACCTTTTAGTCCCAGATACTAGAAAA 57.555 34.615 0.00 0.00 31.37 2.29
2124 2308 8.075761 GACCTTTTAGTCCCAGATACTAGAAA 57.924 38.462 0.00 0.00 31.37 2.52
2125 2309 7.657023 GACCTTTTAGTCCCAGATACTAGAA 57.343 40.000 0.00 0.00 31.37 2.10
2138 2322 3.116079 TGGTTCACGGACCTTTTAGTC 57.884 47.619 0.00 0.00 40.47 2.59
2139 2323 3.564053 TTGGTTCACGGACCTTTTAGT 57.436 42.857 0.00 0.00 40.47 2.24
2140 2324 3.628487 TGTTTGGTTCACGGACCTTTTAG 59.372 43.478 0.00 0.00 40.47 1.85
2141 2325 3.377798 GTGTTTGGTTCACGGACCTTTTA 59.622 43.478 0.00 0.00 40.47 1.52
2142 2326 2.164827 GTGTTTGGTTCACGGACCTTTT 59.835 45.455 0.00 0.00 40.47 2.27
2143 2327 1.746787 GTGTTTGGTTCACGGACCTTT 59.253 47.619 0.00 0.00 40.47 3.11
2144 2328 1.385528 GTGTTTGGTTCACGGACCTT 58.614 50.000 0.00 0.00 40.47 3.50
2145 2329 0.464916 GGTGTTTGGTTCACGGACCT 60.465 55.000 0.00 0.00 40.47 3.85
2146 2330 1.449726 GGGTGTTTGGTTCACGGACC 61.450 60.000 0.00 0.00 40.23 4.46
2147 2331 1.449726 GGGGTGTTTGGTTCACGGAC 61.450 60.000 0.00 0.00 36.76 4.79
2148 2332 1.152922 GGGGTGTTTGGTTCACGGA 60.153 57.895 0.00 0.00 36.76 4.69
2149 2333 2.197605 GGGGGTGTTTGGTTCACGG 61.198 63.158 0.00 0.00 36.76 4.94
2150 2334 0.108963 TAGGGGGTGTTTGGTTCACG 59.891 55.000 0.00 0.00 36.76 4.35
2151 2335 2.597578 ATAGGGGGTGTTTGGTTCAC 57.402 50.000 0.00 0.00 35.36 3.18
2152 2336 3.626222 GCATATAGGGGGTGTTTGGTTCA 60.626 47.826 0.00 0.00 0.00 3.18
2153 2337 2.956333 GCATATAGGGGGTGTTTGGTTC 59.044 50.000 0.00 0.00 0.00 3.62
2154 2338 2.585432 AGCATATAGGGGGTGTTTGGTT 59.415 45.455 0.00 0.00 0.00 3.67
2155 2339 2.214201 AGCATATAGGGGGTGTTTGGT 58.786 47.619 0.00 0.00 0.00 3.67
2156 2340 4.657814 ATAGCATATAGGGGGTGTTTGG 57.342 45.455 0.00 0.00 0.00 3.28
2157 2341 6.121776 TGTATAGCATATAGGGGGTGTTTG 57.878 41.667 0.00 0.00 0.00 2.93
2158 2342 6.331837 AGTTGTATAGCATATAGGGGGTGTTT 59.668 38.462 0.00 0.00 0.00 2.83
2159 2343 5.850028 AGTTGTATAGCATATAGGGGGTGTT 59.150 40.000 0.00 0.00 0.00 3.32
2160 2344 5.412384 AGTTGTATAGCATATAGGGGGTGT 58.588 41.667 0.00 0.00 0.00 4.16
2161 2345 5.721960 AGAGTTGTATAGCATATAGGGGGTG 59.278 44.000 0.00 0.00 0.00 4.61
2162 2346 5.916806 AGAGTTGTATAGCATATAGGGGGT 58.083 41.667 0.00 0.00 0.00 4.95
2163 2347 6.875972 AAGAGTTGTATAGCATATAGGGGG 57.124 41.667 0.00 0.00 0.00 5.40
2164 2348 8.140112 AGAAAGAGTTGTATAGCATATAGGGG 57.860 38.462 0.00 0.00 0.00 4.79
2331 3400 3.386768 TTTCTTTCTCGAGGACAGTGG 57.613 47.619 13.56 0.00 0.00 4.00
2418 3524 2.353958 CATGGGGCTGTGCAGACT 59.646 61.111 4.92 0.00 36.46 3.24
2438 3544 0.466922 ACCAGCCTAAGATGCATGGC 60.467 55.000 16.09 16.09 45.21 4.40
2501 3607 7.490840 CCATATCACCAATTTTGCTTATGTGA 58.509 34.615 0.00 0.00 0.00 3.58
2523 3629 5.663106 TCTCTCCTCATTAACTACTTGCCAT 59.337 40.000 0.00 0.00 0.00 4.40
2792 3898 6.629291 GCCTCTCTCTTCATTAACTACTTGCT 60.629 42.308 0.00 0.00 0.00 3.91
3003 4137 2.933573 ACTAGTACCCGTGATCTGGAG 58.066 52.381 0.00 0.00 0.00 3.86
3004 4138 4.508551 TTACTAGTACCCGTGATCTGGA 57.491 45.455 0.91 0.00 0.00 3.86
3005 4139 5.068723 ACATTTACTAGTACCCGTGATCTGG 59.931 44.000 0.91 0.00 0.00 3.86
3006 4140 6.145338 ACATTTACTAGTACCCGTGATCTG 57.855 41.667 0.91 0.00 0.00 2.90
3007 4141 6.379133 TGAACATTTACTAGTACCCGTGATCT 59.621 38.462 0.91 0.00 0.00 2.75
3008 4142 6.567050 TGAACATTTACTAGTACCCGTGATC 58.433 40.000 0.91 4.65 0.00 2.92
3009 4143 6.534475 TGAACATTTACTAGTACCCGTGAT 57.466 37.500 0.91 0.00 0.00 3.06
3010 4144 5.981088 TGAACATTTACTAGTACCCGTGA 57.019 39.130 0.91 0.00 0.00 4.35
3011 4145 6.424509 TGTTTGAACATTTACTAGTACCCGTG 59.575 38.462 0.91 2.23 33.17 4.94
3012 4146 6.424812 GTGTTTGAACATTTACTAGTACCCGT 59.575 38.462 0.91 0.00 41.59 5.28
3013 4147 6.128472 GGTGTTTGAACATTTACTAGTACCCG 60.128 42.308 0.91 0.00 41.59 5.28
3014 4148 6.128472 CGGTGTTTGAACATTTACTAGTACCC 60.128 42.308 0.91 0.00 41.59 3.69
3015 4149 6.646240 TCGGTGTTTGAACATTTACTAGTACC 59.354 38.462 0.91 0.00 41.59 3.34
3016 4150 7.642071 TCGGTGTTTGAACATTTACTAGTAC 57.358 36.000 0.91 0.00 41.59 2.73
3017 4151 8.659925 TTTCGGTGTTTGAACATTTACTAGTA 57.340 30.769 0.00 0.00 41.59 1.82
3018 4152 7.556733 TTTCGGTGTTTGAACATTTACTAGT 57.443 32.000 0.00 0.00 41.59 2.57
3019 4153 7.060633 GCATTTCGGTGTTTGAACATTTACTAG 59.939 37.037 0.00 0.00 41.59 2.57
3020 4154 6.858993 GCATTTCGGTGTTTGAACATTTACTA 59.141 34.615 0.00 0.00 41.59 1.82
3021 4155 5.689961 GCATTTCGGTGTTTGAACATTTACT 59.310 36.000 0.00 0.00 41.59 2.24
3022 4156 5.107645 GGCATTTCGGTGTTTGAACATTTAC 60.108 40.000 0.00 0.00 41.59 2.01
3023 4157 4.985409 GGCATTTCGGTGTTTGAACATTTA 59.015 37.500 0.00 0.00 41.59 1.40
3024 4158 3.807071 GGCATTTCGGTGTTTGAACATTT 59.193 39.130 0.00 0.00 41.59 2.32
3025 4159 3.389221 GGCATTTCGGTGTTTGAACATT 58.611 40.909 0.00 0.00 41.59 2.71
3026 4160 2.606795 CGGCATTTCGGTGTTTGAACAT 60.607 45.455 0.00 0.00 41.59 2.71
3027 4161 1.268794 CGGCATTTCGGTGTTTGAACA 60.269 47.619 0.00 0.00 36.38 3.18
3028 4162 1.404477 CGGCATTTCGGTGTTTGAAC 58.596 50.000 0.00 0.00 0.00 3.18
3029 4163 0.312416 CCGGCATTTCGGTGTTTGAA 59.688 50.000 0.00 0.00 44.60 2.69
3030 4164 1.953017 CCGGCATTTCGGTGTTTGA 59.047 52.632 0.00 0.00 44.60 2.69
3031 4165 4.550395 CCGGCATTTCGGTGTTTG 57.450 55.556 0.00 0.00 44.60 2.93
3054 4188 1.287730 CTGTCGGTGTGCAGAGCTTC 61.288 60.000 11.55 4.66 34.87 3.86
3106 4240 2.435938 TCGGCGGTTCTTCCATGC 60.436 61.111 7.21 0.00 35.57 4.06
3124 4258 4.486090 CGAGTACCGACGCGTATC 57.514 61.111 13.97 0.00 43.05 2.24
3163 4331 1.691976 TCCAACAACCTCTGTGTCGAT 59.308 47.619 0.00 0.00 38.67 3.59
3177 4345 6.895756 ACTAGGTAGTAGATCATGTTCCAACA 59.104 38.462 0.00 0.00 37.83 3.33
3193 4361 4.125703 CTGACGACCGATAACTAGGTAGT 58.874 47.826 0.22 0.22 46.44 2.73
3194 4362 4.375272 TCTGACGACCGATAACTAGGTAG 58.625 47.826 0.00 0.00 41.51 3.18
3195 4363 4.100035 TCTCTGACGACCGATAACTAGGTA 59.900 45.833 0.00 0.00 41.51 3.08
3199 4367 4.134379 ACTCTCTGACGACCGATAACTA 57.866 45.455 0.00 0.00 0.00 2.24
3226 4394 0.179029 AACTCGGTGGACCAGGTTTG 60.179 55.000 0.00 0.00 35.14 2.93
3252 4420 6.402222 AGTGCCTGAAGAGTTTTATAGTCTG 58.598 40.000 0.00 0.00 36.64 3.51
3261 4429 2.621070 TCCCTAGTGCCTGAAGAGTTT 58.379 47.619 0.00 0.00 0.00 2.66
3273 4441 4.330074 CAGCGTTTACTTTGATCCCTAGTG 59.670 45.833 0.00 0.00 0.00 2.74
3275 4443 3.309954 GCAGCGTTTACTTTGATCCCTAG 59.690 47.826 0.00 0.00 0.00 3.02
3276 4444 3.055385 AGCAGCGTTTACTTTGATCCCTA 60.055 43.478 0.00 0.00 0.00 3.53
3278 4446 2.084546 AGCAGCGTTTACTTTGATCCC 58.915 47.619 0.00 0.00 0.00 3.85
3279 4447 4.939509 TTAGCAGCGTTTACTTTGATCC 57.060 40.909 0.00 0.00 0.00 3.36
3280 4448 6.106877 TGATTAGCAGCGTTTACTTTGATC 57.893 37.500 0.00 0.00 0.00 2.92
3282 4450 5.530519 CTGATTAGCAGCGTTTACTTTGA 57.469 39.130 0.00 0.00 37.90 2.69
3698 6303 6.534079 GTCAAATCATACACAGTACTACCACC 59.466 42.308 0.00 0.00 0.00 4.61
3729 6337 0.460284 AAACCGCGGCTCACAGATAG 60.460 55.000 28.58 0.00 0.00 2.08
3730 6338 0.739462 CAAACCGCGGCTCACAGATA 60.739 55.000 28.58 0.00 0.00 1.98
3731 6339 2.034879 CAAACCGCGGCTCACAGAT 61.035 57.895 28.58 0.00 0.00 2.90
3739 6347 2.050442 CTTCAACCAAACCGCGGC 60.050 61.111 28.58 0.00 0.00 6.53
3796 6404 4.675510 ACATTGCAGTCAACAGAAAAGTG 58.324 39.130 0.00 0.00 34.60 3.16
3797 6405 4.202050 GGACATTGCAGTCAACAGAAAAGT 60.202 41.667 8.22 0.00 40.29 2.66
3799 6407 3.953612 AGGACATTGCAGTCAACAGAAAA 59.046 39.130 8.22 0.00 40.29 2.29
3871 6479 2.108168 TGGATCCCTGGTAAGAAGTCG 58.892 52.381 9.90 0.00 0.00 4.18
3894 6502 6.945435 TGTCTGGCCTTCAATTGATAAACTAA 59.055 34.615 9.40 0.00 0.00 2.24
3895 6503 6.480763 TGTCTGGCCTTCAATTGATAAACTA 58.519 36.000 9.40 0.00 0.00 2.24
3900 6508 4.272489 CCTTGTCTGGCCTTCAATTGATA 58.728 43.478 9.40 0.00 0.00 2.15
3904 6512 1.428912 TCCCTTGTCTGGCCTTCAATT 59.571 47.619 3.32 0.00 0.00 2.32
3924 6532 7.390162 ACAATGGTTTGTTTTCACAAGTGAAAT 59.610 29.630 24.11 8.32 44.00 2.17
3929 6537 6.036577 AGACAATGGTTTGTTTTCACAAGT 57.963 33.333 0.00 0.00 46.01 3.16
3943 6551 6.524101 AGTGTTGTGTTAAAAGACAATGGT 57.476 33.333 8.44 0.00 42.92 3.55
3970 6578 1.870941 TAGTCAGCTCGGGGAGGGAA 61.871 60.000 0.00 0.00 0.00 3.97
3989 6598 2.105821 TGAGGATGACTTTCAACCGGTT 59.894 45.455 15.86 15.86 43.27 4.44
4019 6628 0.749818 TGCGTCCAGGAACAAAAGCA 60.750 50.000 0.00 0.00 0.00 3.91
4110 6719 3.223674 TGGTGTGACTCTGTCTAGTGA 57.776 47.619 0.00 0.00 33.15 3.41
4378 7020 4.829064 AAAACTTGCGTATTCTTGCAGA 57.171 36.364 0.00 0.00 42.89 4.26
4473 7115 1.062525 GATTGGCGGCGATGTGTTC 59.937 57.895 17.75 0.00 0.00 3.18
4535 7177 4.011023 CCTTCTCAGACCTTCGTCTCTTA 58.989 47.826 0.00 0.00 46.90 2.10
4604 7246 7.746929 TCAATTGTGTTTTGGCTAAACTTTTG 58.253 30.769 21.69 17.94 45.18 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.