Multiple sequence alignment - TraesCS7B01G126300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G126300 chr7B 100.000 3204 0 0 1 3204 150189553 150186350 0.000000e+00 5917.0
1 TraesCS7B01G126300 chr7B 97.804 592 13 0 1 592 153549600 153550191 0.000000e+00 1022.0
2 TraesCS7B01G126300 chr7B 100.000 29 0 0 2600 2628 682368841 682368813 2.000000e-03 54.7
3 TraesCS7B01G126300 chr7D 94.295 1893 75 15 592 2471 181976747 181974875 0.000000e+00 2867.0
4 TraesCS7B01G126300 chr7D 91.723 592 44 2 1 592 489156502 489157088 0.000000e+00 817.0
5 TraesCS7B01G126300 chr7D 90.749 454 31 6 2469 2912 181973487 181973035 2.130000e-166 595.0
6 TraesCS7B01G126300 chr7D 77.947 789 145 20 1021 1798 53640949 53640179 1.740000e-127 466.0
7 TraesCS7B01G126300 chr7D 88.851 296 33 0 1435 1730 182333880 182333585 6.530000e-97 364.0
8 TraesCS7B01G126300 chr7D 84.099 283 27 9 2936 3200 189095104 189095386 1.140000e-64 257.0
9 TraesCS7B01G126300 chr7D 82.787 244 27 8 2470 2700 312573836 312574077 1.510000e-48 204.0
10 TraesCS7B01G126300 chr7D 94.737 38 2 0 2362 2399 176545697 176545660 3.450000e-05 60.2
11 TraesCS7B01G126300 chr7A 91.295 1907 98 33 784 2672 189717899 189719755 0.000000e+00 2540.0
12 TraesCS7B01G126300 chr7A 94.257 592 34 0 1 592 267421848 267422439 0.000000e+00 905.0
13 TraesCS7B01G126300 chr7A 79.367 727 131 11 1434 2155 65505298 65506010 7.980000e-136 494.0
14 TraesCS7B01G126300 chr7A 77.877 669 130 12 1071 1734 190014719 190015374 1.790000e-107 399.0
15 TraesCS7B01G126300 chr7A 92.339 248 18 1 2665 2912 189776390 189776636 5.090000e-93 351.0
16 TraesCS7B01G126300 chr7A 87.879 297 34 2 1435 1730 189332476 189332771 6.580000e-92 348.0
17 TraesCS7B01G126300 chr7A 85.496 262 21 10 2941 3200 244752937 244753183 1.140000e-64 257.0
18 TraesCS7B01G126300 chr7A 81.667 240 22 6 2470 2688 341444286 341444524 2.540000e-41 180.0
19 TraesCS7B01G126300 chr7A 84.722 144 18 3 643 786 189715957 189716096 1.200000e-29 141.0
20 TraesCS7B01G126300 chr6B 96.801 594 17 1 1 592 607330914 607330321 0.000000e+00 990.0
21 TraesCS7B01G126300 chr3D 97.104 587 17 0 1 587 580635386 580634800 0.000000e+00 990.0
22 TraesCS7B01G126300 chr3D 86.071 280 22 6 2942 3204 440530349 440530628 5.230000e-73 285.0
23 TraesCS7B01G126300 chr3D 85.614 285 24 6 2937 3204 175040684 175040968 1.880000e-72 283.0
24 TraesCS7B01G126300 chr3D 85.551 263 25 5 2942 3204 426568259 426568508 2.450000e-66 263.0
25 TraesCS7B01G126300 chr3D 83.566 286 30 7 2936 3204 175054692 175054977 5.310000e-63 252.0
26 TraesCS7B01G126300 chr3D 81.338 284 30 12 2941 3204 396682681 396682961 3.240000e-50 209.0
27 TraesCS7B01G126300 chr3D 79.152 283 40 8 2936 3200 142840844 142841125 9.130000e-41 178.0
28 TraesCS7B01G126300 chr2D 96.453 592 21 0 1 592 393577550 393576959 0.000000e+00 977.0
29 TraesCS7B01G126300 chr2D 90.034 592 58 1 1 592 506086534 506087124 0.000000e+00 765.0
30 TraesCS7B01G126300 chr2D 84.674 261 23 10 2942 3200 540068981 540068736 8.880000e-61 244.0
31 TraesCS7B01G126300 chr2D 82.353 153 18 5 2550 2694 634331344 634331495 1.210000e-24 124.0
32 TraesCS7B01G126300 chr2D 91.489 47 3 1 2362 2407 446328909 446328863 2.670000e-06 63.9
33 TraesCS7B01G126300 chr4B 96.453 592 17 3 1 592 495321477 495322064 0.000000e+00 974.0
34 TraesCS7B01G126300 chr4B 84.615 130 15 4 3076 3200 426695113 426694984 1.210000e-24 124.0
35 TraesCS7B01G126300 chr5B 95.333 600 26 2 1 599 123694265 123693667 0.000000e+00 952.0
36 TraesCS7B01G126300 chr5B 83.008 718 110 9 1021 1730 454908049 454907336 9.690000e-180 640.0
37 TraesCS7B01G126300 chr5A 83.799 716 96 14 1021 1730 479462489 479461788 0.000000e+00 662.0
38 TraesCS7B01G126300 chr5A 80.576 278 33 9 2942 3200 320121232 320120957 9.070000e-46 195.0
39 TraesCS7B01G126300 chr5A 85.811 148 16 2 2553 2695 338221606 338221459 5.540000e-33 152.0
40 TraesCS7B01G126300 chr5A 80.000 140 21 5 2552 2685 605783493 605783631 2.630000e-16 97.1
41 TraesCS7B01G126300 chr5D 83.112 752 100 16 996 1730 379235242 379234501 0.000000e+00 660.0
42 TraesCS7B01G126300 chr5D 84.083 289 24 15 2936 3204 255647953 255648239 3.170000e-65 259.0
43 TraesCS7B01G126300 chr5D 84.701 268 31 9 2942 3204 375305896 375305634 3.170000e-65 259.0
44 TraesCS7B01G126300 chr5D 88.112 143 12 2 2551 2688 443880875 443881017 7.110000e-37 165.0
45 TraesCS7B01G126300 chr5D 80.435 92 11 6 2472 2559 380692107 380692019 2.670000e-06 63.9
46 TraesCS7B01G126300 chr4D 88.213 263 27 2 2942 3200 83557107 83557369 8.630000e-81 311.0
47 TraesCS7B01G126300 chr4D 76.948 308 61 6 1021 1323 367793092 367793394 1.980000e-37 167.0
48 TraesCS7B01G126300 chr6A 84.727 275 25 5 2942 3199 581227081 581226807 3.170000e-65 259.0
49 TraesCS7B01G126300 chr2A 88.636 176 20 0 2942 3117 216038852 216039027 6.960000e-52 215.0
50 TraesCS7B01G126300 chr2A 78.475 223 30 9 2485 2690 760323702 760323923 2.590000e-26 130.0
51 TraesCS7B01G126300 chr2A 78.947 114 16 5 2585 2694 780762904 780763013 1.590000e-08 71.3
52 TraesCS7B01G126300 chr4A 79.923 259 44 6 1072 1326 97308143 97307889 1.960000e-42 183.0
53 TraesCS7B01G126300 chr4A 97.222 36 1 0 2474 2509 605385577 605385612 9.600000e-06 62.1
54 TraesCS7B01G126300 chr6D 86.400 125 14 3 3083 3204 393106022 393105898 2.010000e-27 134.0
55 TraesCS7B01G126300 chr2B 78.733 221 30 13 2479 2685 659650835 659651052 7.210000e-27 132.0
56 TraesCS7B01G126300 chr2B 89.362 47 5 0 2353 2399 434118570 434118616 3.450000e-05 60.2
57 TraesCS7B01G126300 chr3A 82.796 93 13 3 2474 2564 33421505 33421596 2.650000e-11 80.5
58 TraesCS7B01G126300 chr1B 79.200 125 19 5 2356 2476 549872608 549872487 2.650000e-11 80.5
59 TraesCS7B01G126300 chr1D 86.567 67 7 1 2624 2688 325587004 325587070 4.430000e-09 73.1
60 TraesCS7B01G126300 chrUn 97.222 36 1 0 2474 2509 48196116 48196081 9.600000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G126300 chr7B 150186350 150189553 3203 True 5917.0 5917 100.0000 1 3204 1 chr7B.!!$R1 3203
1 TraesCS7B01G126300 chr7B 153549600 153550191 591 False 1022.0 1022 97.8040 1 592 1 chr7B.!!$F1 591
2 TraesCS7B01G126300 chr7D 181973035 181976747 3712 True 1731.0 2867 92.5220 592 2912 2 chr7D.!!$R4 2320
3 TraesCS7B01G126300 chr7D 489156502 489157088 586 False 817.0 817 91.7230 1 592 1 chr7D.!!$F3 591
4 TraesCS7B01G126300 chr7D 53640179 53640949 770 True 466.0 466 77.9470 1021 1798 1 chr7D.!!$R1 777
5 TraesCS7B01G126300 chr7A 189715957 189719755 3798 False 1340.5 2540 88.0085 643 2672 2 chr7A.!!$F8 2029
6 TraesCS7B01G126300 chr7A 267421848 267422439 591 False 905.0 905 94.2570 1 592 1 chr7A.!!$F6 591
7 TraesCS7B01G126300 chr7A 65505298 65506010 712 False 494.0 494 79.3670 1434 2155 1 chr7A.!!$F1 721
8 TraesCS7B01G126300 chr7A 190014719 190015374 655 False 399.0 399 77.8770 1071 1734 1 chr7A.!!$F4 663
9 TraesCS7B01G126300 chr6B 607330321 607330914 593 True 990.0 990 96.8010 1 592 1 chr6B.!!$R1 591
10 TraesCS7B01G126300 chr3D 580634800 580635386 586 True 990.0 990 97.1040 1 587 1 chr3D.!!$R1 586
11 TraesCS7B01G126300 chr2D 393576959 393577550 591 True 977.0 977 96.4530 1 592 1 chr2D.!!$R1 591
12 TraesCS7B01G126300 chr2D 506086534 506087124 590 False 765.0 765 90.0340 1 592 1 chr2D.!!$F1 591
13 TraesCS7B01G126300 chr4B 495321477 495322064 587 False 974.0 974 96.4530 1 592 1 chr4B.!!$F1 591
14 TraesCS7B01G126300 chr5B 123693667 123694265 598 True 952.0 952 95.3330 1 599 1 chr5B.!!$R1 598
15 TraesCS7B01G126300 chr5B 454907336 454908049 713 True 640.0 640 83.0080 1021 1730 1 chr5B.!!$R2 709
16 TraesCS7B01G126300 chr5A 479461788 479462489 701 True 662.0 662 83.7990 1021 1730 1 chr5A.!!$R3 709
17 TraesCS7B01G126300 chr5D 379234501 379235242 741 True 660.0 660 83.1120 996 1730 1 chr5D.!!$R2 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 586 0.04140 TCATGAACTGTTTGCGTGCG 60.041 50.0 0.00 0.0 0.00 5.34 F
603 606 0.31777 CCGTGCACATGCGTTTTTCT 60.318 50.0 18.64 0.0 45.83 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 3724 0.320771 CACAAGGAACGGGACCTGAG 60.321 60.0 7.51 0.0 37.85 3.35 R
2295 4147 0.530431 CAACAGTTTTGCCCAGCCAC 60.530 55.0 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.687493 CCCTTCCTCCGCTCCTTCT 60.687 63.158 0.00 0.00 0.00 2.85
423 426 2.273538 ATATACCTCAGTCGGCGTCT 57.726 50.000 6.85 3.06 0.00 4.18
445 448 2.628178 ACTTCCAGATTATGCGATCCGA 59.372 45.455 0.00 0.00 0.00 4.55
526 529 1.343465 CACTCTAACCGTCAACACCCT 59.657 52.381 0.00 0.00 0.00 4.34
533 536 0.874390 CCGTCAACACCCTTGTGATG 59.126 55.000 0.00 0.00 45.76 3.07
534 537 1.593196 CGTCAACACCCTTGTGATGT 58.407 50.000 0.00 0.00 45.76 3.06
535 538 1.531149 CGTCAACACCCTTGTGATGTC 59.469 52.381 0.00 0.00 45.76 3.06
536 539 1.880027 GTCAACACCCTTGTGATGTCC 59.120 52.381 0.00 0.00 45.76 4.02
537 540 1.202879 TCAACACCCTTGTGATGTCCC 60.203 52.381 0.00 0.00 45.76 4.46
538 541 1.149101 AACACCCTTGTGATGTCCCT 58.851 50.000 0.00 0.00 45.76 4.20
539 542 0.401738 ACACCCTTGTGATGTCCCTG 59.598 55.000 0.00 0.00 45.76 4.45
540 543 0.692476 CACCCTTGTGATGTCCCTGA 59.308 55.000 0.00 0.00 45.76 3.86
541 544 1.283029 CACCCTTGTGATGTCCCTGAT 59.717 52.381 0.00 0.00 45.76 2.90
542 545 1.561542 ACCCTTGTGATGTCCCTGATC 59.438 52.381 0.00 0.00 0.00 2.92
543 546 1.133976 CCCTTGTGATGTCCCTGATCC 60.134 57.143 0.00 0.00 0.00 3.36
544 547 1.561076 CCTTGTGATGTCCCTGATCCA 59.439 52.381 0.00 0.00 0.00 3.41
545 548 2.025981 CCTTGTGATGTCCCTGATCCAA 60.026 50.000 0.00 0.00 0.00 3.53
546 549 3.276857 CTTGTGATGTCCCTGATCCAAG 58.723 50.000 0.00 0.00 0.00 3.61
547 550 1.065199 TGTGATGTCCCTGATCCAAGC 60.065 52.381 0.00 0.00 0.00 4.01
548 551 0.178767 TGATGTCCCTGATCCAAGCG 59.821 55.000 0.00 0.00 0.00 4.68
549 552 1.153086 ATGTCCCTGATCCAAGCGC 60.153 57.895 0.00 0.00 0.00 5.92
550 553 2.892425 GTCCCTGATCCAAGCGCG 60.892 66.667 0.00 0.00 0.00 6.86
551 554 4.161295 TCCCTGATCCAAGCGCGG 62.161 66.667 8.83 0.00 0.00 6.46
552 555 4.473520 CCCTGATCCAAGCGCGGT 62.474 66.667 4.23 4.23 0.00 5.68
553 556 2.892425 CCTGATCCAAGCGCGGTC 60.892 66.667 12.91 0.00 0.00 4.79
554 557 2.892425 CTGATCCAAGCGCGGTCC 60.892 66.667 12.91 0.00 0.00 4.46
555 558 4.812476 TGATCCAAGCGCGGTCCG 62.812 66.667 12.91 6.99 40.75 4.79
566 569 3.458163 CGGTCCGCTAAGGCCTCA 61.458 66.667 5.23 0.00 40.77 3.86
567 570 2.797278 CGGTCCGCTAAGGCCTCAT 61.797 63.158 5.23 0.00 40.77 2.90
568 571 1.227674 GGTCCGCTAAGGCCTCATG 60.228 63.158 5.23 0.00 40.77 3.07
569 572 1.686325 GGTCCGCTAAGGCCTCATGA 61.686 60.000 5.23 0.00 40.77 3.07
570 573 0.178068 GTCCGCTAAGGCCTCATGAA 59.822 55.000 5.23 0.00 40.77 2.57
571 574 0.178068 TCCGCTAAGGCCTCATGAAC 59.822 55.000 5.23 0.00 40.77 3.18
572 575 0.179000 CCGCTAAGGCCTCATGAACT 59.821 55.000 5.23 0.00 34.44 3.01
573 576 1.293924 CGCTAAGGCCTCATGAACTG 58.706 55.000 5.23 0.00 34.44 3.16
574 577 1.406069 CGCTAAGGCCTCATGAACTGT 60.406 52.381 5.23 0.00 34.44 3.55
575 578 2.716217 GCTAAGGCCTCATGAACTGTT 58.284 47.619 5.23 0.00 0.00 3.16
576 579 3.084786 GCTAAGGCCTCATGAACTGTTT 58.915 45.455 5.23 0.00 0.00 2.83
577 580 3.119708 GCTAAGGCCTCATGAACTGTTTG 60.120 47.826 5.23 0.00 0.00 2.93
578 581 1.251251 AGGCCTCATGAACTGTTTGC 58.749 50.000 0.00 0.00 0.00 3.68
579 582 0.109597 GGCCTCATGAACTGTTTGCG 60.110 55.000 0.00 0.00 0.00 4.85
580 583 0.593128 GCCTCATGAACTGTTTGCGT 59.407 50.000 0.00 0.00 0.00 5.24
581 584 1.664016 GCCTCATGAACTGTTTGCGTG 60.664 52.381 0.00 0.00 0.00 5.34
582 585 1.664016 CCTCATGAACTGTTTGCGTGC 60.664 52.381 0.00 0.00 0.00 5.34
583 586 0.041400 TCATGAACTGTTTGCGTGCG 60.041 50.000 0.00 0.00 0.00 5.34
584 587 1.370414 ATGAACTGTTTGCGTGCGC 60.370 52.632 9.85 9.85 42.35 6.09
585 588 2.725815 GAACTGTTTGCGTGCGCC 60.726 61.111 14.16 0.00 41.09 6.53
586 589 4.605967 AACTGTTTGCGTGCGCCG 62.606 61.111 14.16 9.69 41.09 6.46
602 605 1.875419 GCCGTGCACATGCGTTTTTC 61.875 55.000 18.64 0.00 45.83 2.29
603 606 0.317770 CCGTGCACATGCGTTTTTCT 60.318 50.000 18.64 0.00 45.83 2.52
709 712 7.527457 GGTAGAATTACGCATTTTTGTTCTCT 58.473 34.615 0.00 0.00 0.00 3.10
1179 2996 2.755876 TCAGGCATCGGACGCTCT 60.756 61.111 0.00 0.00 0.00 4.09
1380 3222 4.354212 CGTGCGTGCGTGTCCTTG 62.354 66.667 0.00 0.00 0.00 3.61
1381 3223 3.269347 GTGCGTGCGTGTCCTTGT 61.269 61.111 0.00 0.00 0.00 3.16
1385 3227 2.594962 CGTGCGTGTCCTTGTGGTC 61.595 63.158 0.00 0.00 34.23 4.02
1386 3228 1.522806 GTGCGTGTCCTTGTGGTCA 60.523 57.895 0.00 0.00 34.23 4.02
1428 3274 4.127726 GTCGTGTCGACGGTCTTC 57.872 61.111 11.62 0.00 46.56 2.87
1704 3551 2.491022 CCCTCCTTCCCGCTCTACG 61.491 68.421 0.00 0.00 43.15 3.51
1754 3601 1.515020 CGACTTCTCCAGGAGCCTG 59.485 63.158 12.26 9.59 43.26 4.85
1875 3724 0.661020 CCTTTGGTTGTGTCGTGTCC 59.339 55.000 0.00 0.00 0.00 4.02
1876 3725 1.663695 CTTTGGTTGTGTCGTGTCCT 58.336 50.000 0.00 0.00 0.00 3.85
1891 3740 1.157751 TCCTCAGGTCCCGTTCCTT 59.842 57.895 0.00 0.00 32.37 3.36
1958 3810 4.681978 AGTTCGTGCTGACCCCGC 62.682 66.667 0.00 0.00 0.00 6.13
1994 3846 3.770040 CGGTGTGCTGGATCGGGA 61.770 66.667 0.00 0.00 0.00 5.14
2067 3919 2.184579 CCTCTTCCCGGACTTCGC 59.815 66.667 0.73 0.00 37.59 4.70
2071 3923 4.367023 TTCCCGGACTTCGCCACG 62.367 66.667 0.73 0.00 37.59 4.94
2216 4068 1.479323 CGGATTAAGGTGGTTCGGAGA 59.521 52.381 0.00 0.00 0.00 3.71
2295 4147 6.861055 AGTTGGTCACGCAAATGTTAAATAAG 59.139 34.615 0.00 0.00 0.00 1.73
2299 4151 5.060446 GTCACGCAAATGTTAAATAAGTGGC 59.940 40.000 0.00 0.00 0.00 5.01
2324 4176 4.038642 GGGCAAAACTGTTGAGTAATGGAA 59.961 41.667 0.00 0.00 0.00 3.53
2410 4270 6.319658 AGCCAACATCCATATAACAAGTTCAG 59.680 38.462 0.00 0.00 0.00 3.02
2501 5753 2.248280 TGATAAGTGCCACACGTGTT 57.752 45.000 20.79 5.94 39.64 3.32
2525 5777 1.816863 GAAGCACTCCGGTCCTGACA 61.817 60.000 0.00 0.00 0.00 3.58
2531 5783 2.484264 CACTCCGGTCCTGACATTTTTC 59.516 50.000 0.00 0.00 0.00 2.29
2579 5839 7.793927 AAAATTAAACTTGCCATCCGAAAAA 57.206 28.000 0.00 0.00 0.00 1.94
2606 5868 4.217550 GGCCATGCTTGACAACTAAAGTTA 59.782 41.667 0.00 0.00 36.32 2.24
2682 5944 5.925969 CGTGCCATATGTATGACACTTATCA 59.074 40.000 14.61 0.00 42.53 2.15
2744 6006 3.958147 TACTCAAGGCGCCTGCTGC 62.958 63.158 33.60 0.00 42.25 5.25
2762 6024 2.543802 CGAGGATAGTCGGCGAGCA 61.544 63.158 11.20 0.11 36.26 4.26
2783 6045 4.569162 GCAATAACATGCAGCACATTCATT 59.431 37.500 0.00 0.00 45.70 2.57
2797 6059 5.572211 CACATTCATTATGAGTCCCAAACG 58.428 41.667 0.00 0.00 37.69 3.60
2827 6089 1.202417 GCGCTGCCTAGACAACAGATA 60.202 52.381 0.00 0.00 33.10 1.98
2831 6093 3.868077 GCTGCCTAGACAACAGATAACAG 59.132 47.826 0.00 0.00 33.10 3.16
2912 6176 5.462068 TCTCAATCACGAACTTATTATGCGG 59.538 40.000 0.00 0.00 0.00 5.69
2913 6177 4.025229 TCAATCACGAACTTATTATGCGGC 60.025 41.667 0.00 0.00 0.00 6.53
2914 6178 3.173668 TCACGAACTTATTATGCGGCT 57.826 42.857 0.00 0.00 0.00 5.52
2915 6179 4.310357 TCACGAACTTATTATGCGGCTA 57.690 40.909 0.00 0.00 0.00 3.93
2916 6180 4.684877 TCACGAACTTATTATGCGGCTAA 58.315 39.130 0.00 0.00 0.00 3.09
2917 6181 4.505191 TCACGAACTTATTATGCGGCTAAC 59.495 41.667 0.00 0.00 0.00 2.34
2929 6193 4.354155 GCTAACGCCACTGACACA 57.646 55.556 0.00 0.00 0.00 3.72
2930 6194 2.612200 GCTAACGCCACTGACACAA 58.388 52.632 0.00 0.00 0.00 3.33
2931 6195 0.512952 GCTAACGCCACTGACACAAG 59.487 55.000 0.00 0.00 0.00 3.16
2932 6196 1.865865 CTAACGCCACTGACACAAGT 58.134 50.000 0.00 0.00 0.00 3.16
2933 6197 2.210116 CTAACGCCACTGACACAAGTT 58.790 47.619 0.00 0.00 0.00 2.66
2934 6198 2.319136 AACGCCACTGACACAAGTTA 57.681 45.000 0.00 0.00 0.00 2.24
2935 6199 1.865865 ACGCCACTGACACAAGTTAG 58.134 50.000 0.00 0.00 37.38 2.34
2936 6200 1.411246 ACGCCACTGACACAAGTTAGA 59.589 47.619 0.00 0.00 35.12 2.10
2937 6201 2.159014 ACGCCACTGACACAAGTTAGAA 60.159 45.455 0.00 0.00 35.12 2.10
2938 6202 3.067106 CGCCACTGACACAAGTTAGAAT 58.933 45.455 0.00 0.00 35.12 2.40
2939 6203 4.242475 CGCCACTGACACAAGTTAGAATA 58.758 43.478 0.00 0.00 35.12 1.75
2940 6204 4.327357 CGCCACTGACACAAGTTAGAATAG 59.673 45.833 0.00 0.00 35.12 1.73
2941 6205 5.238583 GCCACTGACACAAGTTAGAATAGT 58.761 41.667 0.00 0.00 35.12 2.12
2942 6206 5.120830 GCCACTGACACAAGTTAGAATAGTG 59.879 44.000 0.00 0.00 35.12 2.74
2943 6207 6.223852 CCACTGACACAAGTTAGAATAGTGT 58.776 40.000 0.00 0.00 45.21 3.55
2947 6211 5.706916 GACACAAGTTAGAATAGTGTCGGA 58.293 41.667 8.05 0.00 46.23 4.55
2948 6212 5.710984 ACACAAGTTAGAATAGTGTCGGAG 58.289 41.667 0.00 0.00 38.98 4.63
2949 6213 5.243283 ACACAAGTTAGAATAGTGTCGGAGT 59.757 40.000 0.00 0.00 38.98 3.85
2950 6214 6.432162 ACACAAGTTAGAATAGTGTCGGAGTA 59.568 38.462 0.00 0.00 38.98 2.59
2951 6215 7.040201 ACACAAGTTAGAATAGTGTCGGAGTAA 60.040 37.037 0.00 0.00 38.98 2.24
2952 6216 7.811236 CACAAGTTAGAATAGTGTCGGAGTAAA 59.189 37.037 0.00 0.00 0.00 2.01
2953 6217 8.529476 ACAAGTTAGAATAGTGTCGGAGTAAAT 58.471 33.333 0.00 0.00 0.00 1.40
2954 6218 8.808529 CAAGTTAGAATAGTGTCGGAGTAAATG 58.191 37.037 0.00 0.00 0.00 2.32
2955 6219 8.289939 AGTTAGAATAGTGTCGGAGTAAATGA 57.710 34.615 0.00 0.00 0.00 2.57
2956 6220 8.189460 AGTTAGAATAGTGTCGGAGTAAATGAC 58.811 37.037 0.00 0.00 0.00 3.06
2957 6221 5.903810 AGAATAGTGTCGGAGTAAATGACC 58.096 41.667 0.00 0.00 0.00 4.02
2958 6222 5.421056 AGAATAGTGTCGGAGTAAATGACCA 59.579 40.000 0.00 0.00 0.00 4.02
2959 6223 3.314541 AGTGTCGGAGTAAATGACCAC 57.685 47.619 0.00 0.00 0.00 4.16
2960 6224 1.990563 GTGTCGGAGTAAATGACCACG 59.009 52.381 0.00 0.00 0.00 4.94
2961 6225 1.887854 TGTCGGAGTAAATGACCACGA 59.112 47.619 0.00 0.00 35.20 4.35
2962 6226 2.094906 TGTCGGAGTAAATGACCACGAG 60.095 50.000 0.00 0.00 37.37 4.18
2963 6227 2.094854 GTCGGAGTAAATGACCACGAGT 60.095 50.000 0.00 0.00 37.37 4.18
2964 6228 3.127548 GTCGGAGTAAATGACCACGAGTA 59.872 47.826 0.00 0.00 37.37 2.59
2965 6229 3.376234 TCGGAGTAAATGACCACGAGTAG 59.624 47.826 0.00 0.00 33.37 2.57
2966 6230 3.445857 GGAGTAAATGACCACGAGTAGC 58.554 50.000 0.00 0.00 0.00 3.58
2967 6231 3.445857 GAGTAAATGACCACGAGTAGCC 58.554 50.000 0.00 0.00 0.00 3.93
2968 6232 2.829720 AGTAAATGACCACGAGTAGCCA 59.170 45.455 0.00 0.00 0.00 4.75
2969 6233 2.094762 AAATGACCACGAGTAGCCAC 57.905 50.000 0.00 0.00 0.00 5.01
2970 6234 0.973632 AATGACCACGAGTAGCCACA 59.026 50.000 0.00 0.00 0.00 4.17
2971 6235 1.195115 ATGACCACGAGTAGCCACAT 58.805 50.000 0.00 0.00 0.00 3.21
2972 6236 0.530744 TGACCACGAGTAGCCACATC 59.469 55.000 0.00 0.00 0.00 3.06
2973 6237 0.530744 GACCACGAGTAGCCACATCA 59.469 55.000 0.00 0.00 0.00 3.07
2974 6238 0.532573 ACCACGAGTAGCCACATCAG 59.467 55.000 0.00 0.00 0.00 2.90
2975 6239 0.807667 CCACGAGTAGCCACATCAGC 60.808 60.000 0.00 0.00 0.00 4.26
2976 6240 0.807667 CACGAGTAGCCACATCAGCC 60.808 60.000 0.00 0.00 0.00 4.85
2977 6241 1.227380 CGAGTAGCCACATCAGCCC 60.227 63.158 0.00 0.00 0.00 5.19
2978 6242 1.147153 GAGTAGCCACATCAGCCCC 59.853 63.158 0.00 0.00 0.00 5.80
2979 6243 2.193248 GTAGCCACATCAGCCCCC 59.807 66.667 0.00 0.00 0.00 5.40
2996 6260 2.297701 CCCCCATGGTATTTCAAGACG 58.702 52.381 11.73 0.00 0.00 4.18
2997 6261 2.356741 CCCCCATGGTATTTCAAGACGT 60.357 50.000 11.73 0.00 0.00 4.34
2998 6262 2.943033 CCCCATGGTATTTCAAGACGTC 59.057 50.000 11.73 7.70 0.00 4.34
2999 6263 2.607635 CCCATGGTATTTCAAGACGTCG 59.392 50.000 11.73 0.00 0.00 5.12
3000 6264 2.607635 CCATGGTATTTCAAGACGTCGG 59.392 50.000 10.46 6.93 0.00 4.79
3001 6265 2.373540 TGGTATTTCAAGACGTCGGG 57.626 50.000 10.46 6.54 0.00 5.14
3002 6266 1.066716 TGGTATTTCAAGACGTCGGGG 60.067 52.381 10.46 3.82 0.00 5.73
3003 6267 1.004595 GTATTTCAAGACGTCGGGGC 58.995 55.000 10.46 0.00 0.00 5.80
3004 6268 0.108041 TATTTCAAGACGTCGGGGCC 60.108 55.000 10.46 0.00 0.00 5.80
3005 6269 3.750077 TATTTCAAGACGTCGGGGCCG 62.750 57.143 10.46 0.00 41.35 6.13
3022 6286 4.704833 GACTGCGCCCCTCAAGCA 62.705 66.667 4.18 0.00 39.25 3.91
3023 6287 3.984193 GACTGCGCCCCTCAAGCAT 62.984 63.158 4.18 0.00 40.35 3.79
3024 6288 3.207669 CTGCGCCCCTCAAGCATC 61.208 66.667 4.18 0.00 40.35 3.91
3025 6289 3.982316 CTGCGCCCCTCAAGCATCA 62.982 63.158 4.18 0.00 40.35 3.07
3026 6290 2.751436 GCGCCCCTCAAGCATCAA 60.751 61.111 0.00 0.00 0.00 2.57
3027 6291 2.342650 GCGCCCCTCAAGCATCAAA 61.343 57.895 0.00 0.00 0.00 2.69
3028 6292 1.805254 CGCCCCTCAAGCATCAAAG 59.195 57.895 0.00 0.00 0.00 2.77
3029 6293 0.677731 CGCCCCTCAAGCATCAAAGA 60.678 55.000 0.00 0.00 0.00 2.52
3030 6294 0.813821 GCCCCTCAAGCATCAAAGAC 59.186 55.000 0.00 0.00 0.00 3.01
3031 6295 1.887956 GCCCCTCAAGCATCAAAGACA 60.888 52.381 0.00 0.00 0.00 3.41
3032 6296 2.517959 CCCCTCAAGCATCAAAGACAA 58.482 47.619 0.00 0.00 0.00 3.18
3033 6297 2.892852 CCCCTCAAGCATCAAAGACAAA 59.107 45.455 0.00 0.00 0.00 2.83
3034 6298 3.057033 CCCCTCAAGCATCAAAGACAAAG 60.057 47.826 0.00 0.00 0.00 2.77
3035 6299 3.057033 CCCTCAAGCATCAAAGACAAAGG 60.057 47.826 0.00 0.00 0.00 3.11
3036 6300 3.822735 CCTCAAGCATCAAAGACAAAGGA 59.177 43.478 0.00 0.00 0.00 3.36
3037 6301 4.320788 CCTCAAGCATCAAAGACAAAGGAC 60.321 45.833 0.00 0.00 0.00 3.85
3038 6302 3.569701 TCAAGCATCAAAGACAAAGGACC 59.430 43.478 0.00 0.00 0.00 4.46
3039 6303 2.154462 AGCATCAAAGACAAAGGACCG 58.846 47.619 0.00 0.00 0.00 4.79
3040 6304 1.401539 GCATCAAAGACAAAGGACCGC 60.402 52.381 0.00 0.00 0.00 5.68
3041 6305 1.200020 CATCAAAGACAAAGGACCGCC 59.800 52.381 0.00 0.00 0.00 6.13
3050 6314 3.330720 AGGACCGCCTTCTTGGGG 61.331 66.667 0.00 0.00 43.90 4.96
3057 6321 3.407967 CCTTCTTGGGGCCGGCTA 61.408 66.667 28.56 10.66 0.00 3.93
3058 6322 2.190578 CTTCTTGGGGCCGGCTAG 59.809 66.667 28.56 17.92 0.00 3.42
3059 6323 2.609610 TTCTTGGGGCCGGCTAGT 60.610 61.111 28.56 0.00 0.00 2.57
3060 6324 2.595009 CTTCTTGGGGCCGGCTAGTC 62.595 65.000 28.56 9.46 0.00 2.59
3061 6325 4.176752 CTTGGGGCCGGCTAGTCC 62.177 72.222 28.56 19.00 0.00 3.85
3065 6329 3.851128 GGGCCGGCTAGTCCAGAC 61.851 72.222 28.56 5.59 34.01 3.51
3070 6334 4.208686 GGCTAGTCCAGACGGCCG 62.209 72.222 26.86 26.86 41.86 6.13
3071 6335 4.208686 GCTAGTCCAGACGGCCGG 62.209 72.222 31.76 11.94 36.20 6.13
3072 6336 2.754658 CTAGTCCAGACGGCCGGT 60.755 66.667 31.76 15.52 36.20 5.28
3073 6337 2.283388 TAGTCCAGACGGCCGGTT 60.283 61.111 31.76 14.59 36.20 4.44
3074 6338 2.558554 CTAGTCCAGACGGCCGGTTG 62.559 65.000 31.76 25.21 36.20 3.77
3077 6341 4.077184 CCAGACGGCCGGTTGCTA 62.077 66.667 31.76 0.00 40.92 3.49
3078 6342 2.509336 CAGACGGCCGGTTGCTAG 60.509 66.667 31.76 7.86 40.92 3.42
3079 6343 2.678934 AGACGGCCGGTTGCTAGA 60.679 61.111 31.76 0.00 40.92 2.43
3080 6344 2.263540 GACGGCCGGTTGCTAGAA 59.736 61.111 31.76 0.00 40.92 2.10
3081 6345 1.810030 GACGGCCGGTTGCTAGAAG 60.810 63.158 31.76 0.00 40.92 2.85
3082 6346 2.511600 CGGCCGGTTGCTAGAAGG 60.512 66.667 20.10 0.00 40.92 3.46
3083 6347 2.824489 GGCCGGTTGCTAGAAGGC 60.824 66.667 1.90 0.00 46.51 4.35
3084 6348 3.195698 GCCGGTTGCTAGAAGGCG 61.196 66.667 1.90 0.00 38.28 5.52
3085 6349 2.511600 CCGGTTGCTAGAAGGCGG 60.512 66.667 0.00 0.00 34.52 6.13
3086 6350 3.195698 CGGTTGCTAGAAGGCGGC 61.196 66.667 0.00 0.00 34.52 6.53
3087 6351 2.824489 GGTTGCTAGAAGGCGGCC 60.824 66.667 12.11 12.11 34.52 6.13
3088 6352 2.046314 GTTGCTAGAAGGCGGCCA 60.046 61.111 23.09 0.00 34.52 5.36
3089 6353 2.046314 TTGCTAGAAGGCGGCCAC 60.046 61.111 23.09 14.62 34.52 5.01
3090 6354 3.950794 TTGCTAGAAGGCGGCCACG 62.951 63.158 23.09 5.28 44.63 4.94
3091 6355 4.143333 GCTAGAAGGCGGCCACGA 62.143 66.667 23.09 10.05 44.60 4.35
3092 6356 2.105128 CTAGAAGGCGGCCACGAG 59.895 66.667 23.09 15.56 44.60 4.18
3093 6357 2.361992 TAGAAGGCGGCCACGAGA 60.362 61.111 23.09 0.00 44.60 4.04
3094 6358 1.739338 CTAGAAGGCGGCCACGAGAT 61.739 60.000 23.09 3.16 44.60 2.75
3095 6359 2.016393 TAGAAGGCGGCCACGAGATG 62.016 60.000 23.09 0.00 44.60 2.90
3103 6367 3.461773 CCACGAGATGGGCCGACT 61.462 66.667 0.00 0.00 45.95 4.18
3104 6368 2.105128 CACGAGATGGGCCGACTC 59.895 66.667 16.41 16.41 0.00 3.36
3105 6369 3.148279 ACGAGATGGGCCGACTCC 61.148 66.667 19.18 6.66 0.00 3.85
3106 6370 2.835431 CGAGATGGGCCGACTCCT 60.835 66.667 19.18 3.94 0.00 3.69
3107 6371 1.528542 CGAGATGGGCCGACTCCTA 60.529 63.158 19.18 0.00 0.00 2.94
3108 6372 1.519751 CGAGATGGGCCGACTCCTAG 61.520 65.000 19.18 6.52 0.00 3.02
3109 6373 1.811645 GAGATGGGCCGACTCCTAGC 61.812 65.000 15.78 0.00 0.00 3.42
3110 6374 2.041922 ATGGGCCGACTCCTAGCA 60.042 61.111 0.00 0.00 0.00 3.49
3111 6375 2.093537 GATGGGCCGACTCCTAGCAG 62.094 65.000 0.00 0.00 0.00 4.24
3112 6376 3.541713 GGGCCGACTCCTAGCAGG 61.542 72.222 0.00 0.00 36.46 4.85
3113 6377 4.228567 GGCCGACTCCTAGCAGGC 62.229 72.222 0.00 5.09 46.51 4.85
3114 6378 4.577246 GCCGACTCCTAGCAGGCG 62.577 72.222 0.46 0.46 45.25 5.52
3116 6380 4.577246 CGACTCCTAGCAGGCGGC 62.577 72.222 0.00 0.00 41.62 6.53
3117 6381 4.228567 GACTCCTAGCAGGCGGCC 62.229 72.222 12.11 12.11 46.50 6.13
3119 6383 4.537433 CTCCTAGCAGGCGGCCAC 62.537 72.222 23.09 13.02 46.50 5.01
3122 6386 4.845580 CTAGCAGGCGGCCACCAG 62.846 72.222 23.09 4.95 46.50 4.00
3134 6398 3.775654 CACCAGGGAGGCCGACTC 61.776 72.222 0.00 0.00 45.84 3.36
3141 6405 3.124686 GAGGCCGACTCCTAGCAG 58.875 66.667 0.00 0.00 40.49 4.24
3142 6406 2.443016 AGGCCGACTCCTAGCAGG 60.443 66.667 0.00 0.00 33.95 4.85
3143 6407 4.228567 GGCCGACTCCTAGCAGGC 62.229 72.222 0.00 5.09 46.51 4.85
3144 6408 4.577246 GCCGACTCCTAGCAGGCG 62.577 72.222 0.46 0.46 45.25 5.52
3147 6411 2.809010 GACTCCTAGCAGGCGACC 59.191 66.667 0.00 0.00 34.61 4.79
3148 6412 2.760385 ACTCCTAGCAGGCGACCC 60.760 66.667 0.00 0.00 34.61 4.46
3149 6413 3.541713 CTCCTAGCAGGCGACCCC 61.542 72.222 0.00 0.00 34.61 4.95
3151 6415 3.541713 CCTAGCAGGCGACCCCTC 61.542 72.222 0.00 0.00 44.09 4.30
3152 6416 3.905678 CTAGCAGGCGACCCCTCG 61.906 72.222 0.00 0.00 44.09 4.63
3153 6417 4.753662 TAGCAGGCGACCCCTCGT 62.754 66.667 0.00 0.00 44.09 4.18
3156 6420 3.382832 CAGGCGACCCCTCGTTCT 61.383 66.667 0.00 0.00 44.09 3.01
3157 6421 3.069318 AGGCGACCCCTCGTTCTC 61.069 66.667 0.00 0.00 41.21 2.87
3158 6422 4.144703 GGCGACCCCTCGTTCTCC 62.145 72.222 0.00 0.00 42.33 3.71
3159 6423 3.069318 GCGACCCCTCGTTCTCCT 61.069 66.667 0.00 0.00 42.33 3.69
3160 6424 2.885861 CGACCCCTCGTTCTCCTG 59.114 66.667 0.00 0.00 35.00 3.86
3161 6425 1.677966 CGACCCCTCGTTCTCCTGA 60.678 63.158 0.00 0.00 35.00 3.86
3162 6426 1.248785 CGACCCCTCGTTCTCCTGAA 61.249 60.000 0.00 0.00 35.00 3.02
3163 6427 0.533032 GACCCCTCGTTCTCCTGAAG 59.467 60.000 0.00 0.00 32.15 3.02
3164 6428 0.178929 ACCCCTCGTTCTCCTGAAGT 60.179 55.000 0.00 0.00 32.15 3.01
3165 6429 0.977395 CCCCTCGTTCTCCTGAAGTT 59.023 55.000 0.00 0.00 32.15 2.66
3166 6430 2.176889 CCCCTCGTTCTCCTGAAGTTA 58.823 52.381 0.00 0.00 32.15 2.24
3167 6431 2.166664 CCCCTCGTTCTCCTGAAGTTAG 59.833 54.545 0.00 0.00 32.15 2.34
3168 6432 2.826725 CCCTCGTTCTCCTGAAGTTAGT 59.173 50.000 0.00 0.00 32.15 2.24
3169 6433 4.015084 CCCTCGTTCTCCTGAAGTTAGTA 58.985 47.826 0.00 0.00 32.15 1.82
3170 6434 4.142425 CCCTCGTTCTCCTGAAGTTAGTAC 60.142 50.000 0.00 0.00 32.15 2.73
3171 6435 4.142425 CCTCGTTCTCCTGAAGTTAGTACC 60.142 50.000 0.00 0.00 32.15 3.34
3172 6436 3.760684 TCGTTCTCCTGAAGTTAGTACCC 59.239 47.826 0.00 0.00 32.15 3.69
3173 6437 3.119209 CGTTCTCCTGAAGTTAGTACCCC 60.119 52.174 0.00 0.00 32.15 4.95
3174 6438 3.836562 GTTCTCCTGAAGTTAGTACCCCA 59.163 47.826 0.00 0.00 32.15 4.96
3175 6439 4.348020 TCTCCTGAAGTTAGTACCCCAT 57.652 45.455 0.00 0.00 0.00 4.00
3176 6440 4.695606 TCTCCTGAAGTTAGTACCCCATT 58.304 43.478 0.00 0.00 0.00 3.16
3177 6441 5.845734 TCTCCTGAAGTTAGTACCCCATTA 58.154 41.667 0.00 0.00 0.00 1.90
3178 6442 5.659971 TCTCCTGAAGTTAGTACCCCATTAC 59.340 44.000 0.00 0.00 0.00 1.89
3179 6443 5.343715 TCCTGAAGTTAGTACCCCATTACA 58.656 41.667 0.00 0.00 0.00 2.41
3180 6444 5.786457 TCCTGAAGTTAGTACCCCATTACAA 59.214 40.000 0.00 0.00 0.00 2.41
3181 6445 5.878669 CCTGAAGTTAGTACCCCATTACAAC 59.121 44.000 0.00 0.00 0.00 3.32
3182 6446 5.481105 TGAAGTTAGTACCCCATTACAACG 58.519 41.667 0.00 0.00 0.00 4.10
3183 6447 5.245751 TGAAGTTAGTACCCCATTACAACGA 59.754 40.000 0.00 0.00 0.00 3.85
3184 6448 5.077134 AGTTAGTACCCCATTACAACGAC 57.923 43.478 0.00 0.00 0.00 4.34
3185 6449 2.660189 AGTACCCCATTACAACGACG 57.340 50.000 0.00 0.00 0.00 5.12
3186 6450 2.170166 AGTACCCCATTACAACGACGA 58.830 47.619 0.00 0.00 0.00 4.20
3187 6451 2.165030 AGTACCCCATTACAACGACGAG 59.835 50.000 0.00 0.00 0.00 4.18
3188 6452 1.259609 ACCCCATTACAACGACGAGA 58.740 50.000 0.00 0.00 0.00 4.04
3189 6453 1.067354 ACCCCATTACAACGACGAGAC 60.067 52.381 0.00 0.00 0.00 3.36
3190 6454 1.265568 CCCATTACAACGACGAGACG 58.734 55.000 0.00 0.00 39.31 4.18
3191 6455 1.265568 CCATTACAACGACGAGACGG 58.734 55.000 0.00 0.00 37.61 4.79
3192 6456 1.265568 CATTACAACGACGAGACGGG 58.734 55.000 0.00 0.00 37.61 5.28
3193 6457 0.171903 ATTACAACGACGAGACGGGG 59.828 55.000 0.00 0.00 37.61 5.73
3194 6458 2.476534 TTACAACGACGAGACGGGGC 62.477 60.000 0.00 0.00 37.61 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.141665 CCAGTCGTGCGATGATCCA 59.858 57.895 0.00 0.00 0.00 3.41
367 370 0.825010 CCAGGTGTTCTTTGCTGGCT 60.825 55.000 0.00 0.00 0.00 4.75
423 426 3.824443 TCGGATCGCATAATCTGGAAGTA 59.176 43.478 0.00 0.00 33.58 2.24
445 448 2.237392 GTGCACCTACTCCCTGAGATTT 59.763 50.000 5.22 0.00 33.32 2.17
526 529 2.618816 GCTTGGATCAGGGACATCACAA 60.619 50.000 0.00 0.00 0.00 3.33
533 536 2.892425 CGCGCTTGGATCAGGGAC 60.892 66.667 5.56 0.00 0.00 4.46
534 537 4.161295 CCGCGCTTGGATCAGGGA 62.161 66.667 5.56 0.00 0.00 4.20
535 538 4.473520 ACCGCGCTTGGATCAGGG 62.474 66.667 5.56 0.00 0.00 4.45
536 539 2.892425 GACCGCGCTTGGATCAGG 60.892 66.667 5.56 0.00 0.00 3.86
537 540 2.892425 GGACCGCGCTTGGATCAG 60.892 66.667 5.56 0.00 0.00 2.90
538 541 4.812476 CGGACCGCGCTTGGATCA 62.812 66.667 5.56 0.00 0.00 2.92
549 552 2.797278 ATGAGGCCTTAGCGGACCG 61.797 63.158 6.77 10.29 44.54 4.79
550 553 1.227674 CATGAGGCCTTAGCGGACC 60.228 63.158 6.77 0.00 44.54 4.46
551 554 0.178068 TTCATGAGGCCTTAGCGGAC 59.822 55.000 6.77 0.00 43.35 4.79
552 555 0.178068 GTTCATGAGGCCTTAGCGGA 59.822 55.000 6.77 0.00 41.24 5.54
553 556 0.179000 AGTTCATGAGGCCTTAGCGG 59.821 55.000 6.77 0.00 41.24 5.52
554 557 1.293924 CAGTTCATGAGGCCTTAGCG 58.706 55.000 6.77 0.00 41.24 4.26
555 558 2.409948 ACAGTTCATGAGGCCTTAGC 57.590 50.000 6.77 0.00 38.76 3.09
556 559 3.119708 GCAAACAGTTCATGAGGCCTTAG 60.120 47.826 6.77 0.00 0.00 2.18
557 560 2.819608 GCAAACAGTTCATGAGGCCTTA 59.180 45.455 6.77 1.66 0.00 2.69
558 561 1.615392 GCAAACAGTTCATGAGGCCTT 59.385 47.619 6.77 0.00 0.00 4.35
559 562 1.251251 GCAAACAGTTCATGAGGCCT 58.749 50.000 3.86 3.86 0.00 5.19
560 563 0.109597 CGCAAACAGTTCATGAGGCC 60.110 55.000 0.00 0.00 0.00 5.19
561 564 0.593128 ACGCAAACAGTTCATGAGGC 59.407 50.000 0.00 0.00 0.00 4.70
562 565 1.664016 GCACGCAAACAGTTCATGAGG 60.664 52.381 0.00 0.00 0.00 3.86
563 566 1.678360 GCACGCAAACAGTTCATGAG 58.322 50.000 0.00 0.00 0.00 2.90
564 567 0.041400 CGCACGCAAACAGTTCATGA 60.041 50.000 0.00 0.00 0.00 3.07
565 568 1.599422 GCGCACGCAAACAGTTCATG 61.599 55.000 10.65 0.00 41.49 3.07
566 569 1.370414 GCGCACGCAAACAGTTCAT 60.370 52.632 10.65 0.00 41.49 2.57
567 570 2.024022 GCGCACGCAAACAGTTCA 59.976 55.556 10.65 0.00 41.49 3.18
568 571 2.725815 GGCGCACGCAAACAGTTC 60.726 61.111 17.69 0.00 44.11 3.01
569 572 4.605967 CGGCGCACGCAAACAGTT 62.606 61.111 17.69 0.00 44.11 3.16
583 586 1.875419 GAAAAACGCATGTGCACGGC 61.875 55.000 19.92 19.92 42.21 5.68
584 587 0.317770 AGAAAAACGCATGTGCACGG 60.318 50.000 13.13 8.21 42.21 4.94
585 588 1.476074 AAGAAAAACGCATGTGCACG 58.524 45.000 13.13 2.13 42.21 5.34
586 589 3.115554 AGAAAGAAAAACGCATGTGCAC 58.884 40.909 10.75 10.75 42.21 4.57
587 590 3.435105 AGAAAGAAAAACGCATGTGCA 57.565 38.095 6.08 0.00 42.21 4.57
588 591 6.452244 AATAAGAAAGAAAAACGCATGTGC 57.548 33.333 6.08 0.00 37.78 4.57
589 592 8.500837 TGTAATAAGAAAGAAAAACGCATGTG 57.499 30.769 4.30 4.30 0.00 3.21
638 641 1.517242 GTGGCTTGGTCTCAGTTGAG 58.483 55.000 2.69 2.69 43.36 3.02
709 712 2.688507 CCGTAAGAGCAAAAGCAGAGA 58.311 47.619 0.00 0.00 43.02 3.10
1179 2996 2.490148 CGCGAGCTCCAGGGACATA 61.490 63.158 8.47 0.00 0.00 2.29
1209 3026 1.737008 GCCGACGAGGACAAGGTTC 60.737 63.158 0.00 0.00 45.00 3.62
1251 3068 0.331616 TGGAGATGGTCTCGGAGACA 59.668 55.000 32.50 21.44 46.79 3.41
1381 3223 0.603065 CGATCAGTGGACAGTGACCA 59.397 55.000 10.44 10.44 42.90 4.02
1385 3227 0.603065 TGACCGATCAGTGGACAGTG 59.397 55.000 0.69 0.69 0.00 3.66
1386 3228 1.205655 CATGACCGATCAGTGGACAGT 59.794 52.381 0.00 0.00 38.57 3.55
1424 3270 3.008517 TCCCCTGCATGCGGAAGA 61.009 61.111 28.32 19.62 0.00 2.87
1426 3272 4.776322 CGTCCCCTGCATGCGGAA 62.776 66.667 28.32 9.97 0.00 4.30
1491 3338 2.829206 CGGCGTTGTTCACCAGCAA 61.829 57.895 0.00 0.00 0.00 3.91
1875 3724 0.320771 CACAAGGAACGGGACCTGAG 60.321 60.000 7.51 0.00 37.85 3.35
1876 3725 1.752198 CACAAGGAACGGGACCTGA 59.248 57.895 7.51 0.00 37.85 3.86
1891 3740 0.756294 ACACCATGTTCGTCTCCACA 59.244 50.000 0.00 0.00 0.00 4.17
1982 3834 4.467084 GCCGTTCCCGATCCAGCA 62.467 66.667 0.00 0.00 35.63 4.41
2026 3878 1.002624 GAACCACCCCTGCAATCGA 60.003 57.895 0.00 0.00 0.00 3.59
2216 4068 1.555075 ACATGCTCCAGTAACCACGAT 59.445 47.619 0.00 0.00 0.00 3.73
2295 4147 0.530431 CAACAGTTTTGCCCAGCCAC 60.530 55.000 0.00 0.00 0.00 5.01
2299 4151 4.549458 CATTACTCAACAGTTTTGCCCAG 58.451 43.478 0.00 0.00 33.62 4.45
2354 4209 3.359695 AGCGGGTGGAAAGCTTATTTA 57.640 42.857 0.00 0.00 38.13 1.40
2390 4245 5.590259 GCACCTGAACTTGTTATATGGATGT 59.410 40.000 0.00 0.00 0.00 3.06
2410 4270 5.266242 CAGACTATTTTATTTCGCTGCACC 58.734 41.667 0.00 0.00 0.00 5.01
2501 5753 1.582968 GACCGGAGTGCTTCGTGTA 59.417 57.895 9.46 0.00 0.00 2.90
2525 5777 9.920946 TGGATGGCTACTTTATTCTAGAAAAAT 57.079 29.630 9.71 0.00 0.00 1.82
2579 5839 2.041701 AGTTGTCAAGCATGGCCTTTT 58.958 42.857 3.32 0.00 0.00 2.27
2606 5868 0.892755 TTTAGTGACGCGAGGATGGT 59.107 50.000 15.93 0.00 0.00 3.55
2688 5950 9.063615 GGTGGTCTTTTTCTCTATGTCTTTTAA 57.936 33.333 0.00 0.00 0.00 1.52
2696 5958 6.246420 CACTTGGTGGTCTTTTTCTCTATG 57.754 41.667 0.00 0.00 0.00 2.23
2744 6006 2.060004 TTGCTCGCCGACTATCCTCG 62.060 60.000 0.00 0.00 0.00 4.63
2762 6024 7.718525 TCATAATGAATGTGCTGCATGTTATT 58.281 30.769 5.27 4.94 37.96 1.40
2776 6038 4.336433 AGCGTTTGGGACTCATAATGAATG 59.664 41.667 0.00 0.00 36.88 2.67
2783 6045 0.892755 ACGAGCGTTTGGGACTCATA 59.107 50.000 0.00 0.00 0.00 2.15
2805 6067 2.126071 GTTGTCTAGGCAGCGCGA 60.126 61.111 12.10 0.00 0.00 5.87
2827 6089 6.515272 TTCTTTCTTTTCTGCAGAACTGTT 57.485 33.333 28.46 0.00 33.13 3.16
2831 6093 9.736023 TTCTATTTTCTTTCTTTTCTGCAGAAC 57.264 29.630 28.46 0.00 33.13 3.01
2865 6127 0.744874 TTTCATAGACGGGCCTCTCG 59.255 55.000 0.84 0.00 0.00 4.04
2866 6128 2.032620 TCTTTCATAGACGGGCCTCTC 58.967 52.381 0.84 0.00 0.00 3.20
2912 6176 0.512952 CTTGTGTCAGTGGCGTTAGC 59.487 55.000 0.00 0.00 44.18 3.09
2913 6177 1.865865 ACTTGTGTCAGTGGCGTTAG 58.134 50.000 0.00 0.00 0.00 2.34
2914 6178 2.319136 AACTTGTGTCAGTGGCGTTA 57.681 45.000 0.00 0.00 0.00 3.18
2915 6179 2.159014 TCTAACTTGTGTCAGTGGCGTT 60.159 45.455 0.00 0.00 0.00 4.84
2916 6180 1.411246 TCTAACTTGTGTCAGTGGCGT 59.589 47.619 0.00 0.00 0.00 5.68
2917 6181 2.148916 TCTAACTTGTGTCAGTGGCG 57.851 50.000 0.00 0.00 0.00 5.69
2918 6182 5.120830 CACTATTCTAACTTGTGTCAGTGGC 59.879 44.000 0.00 0.00 0.00 5.01
2919 6183 6.223852 ACACTATTCTAACTTGTGTCAGTGG 58.776 40.000 0.00 0.00 37.29 4.00
2925 6189 5.243283 ACTCCGACACTATTCTAACTTGTGT 59.757 40.000 0.00 0.00 43.39 3.72
2926 6190 5.710984 ACTCCGACACTATTCTAACTTGTG 58.289 41.667 0.00 0.00 35.09 3.33
2927 6191 5.979288 ACTCCGACACTATTCTAACTTGT 57.021 39.130 0.00 0.00 0.00 3.16
2928 6192 8.808529 CATTTACTCCGACACTATTCTAACTTG 58.191 37.037 0.00 0.00 0.00 3.16
2929 6193 8.746530 TCATTTACTCCGACACTATTCTAACTT 58.253 33.333 0.00 0.00 0.00 2.66
2930 6194 8.189460 GTCATTTACTCCGACACTATTCTAACT 58.811 37.037 0.00 0.00 0.00 2.24
2931 6195 7.434602 GGTCATTTACTCCGACACTATTCTAAC 59.565 40.741 0.00 0.00 0.00 2.34
2932 6196 7.123098 TGGTCATTTACTCCGACACTATTCTAA 59.877 37.037 0.00 0.00 0.00 2.10
2933 6197 6.604396 TGGTCATTTACTCCGACACTATTCTA 59.396 38.462 0.00 0.00 0.00 2.10
2934 6198 5.421056 TGGTCATTTACTCCGACACTATTCT 59.579 40.000 0.00 0.00 0.00 2.40
2935 6199 5.519206 GTGGTCATTTACTCCGACACTATTC 59.481 44.000 0.00 0.00 0.00 1.75
2936 6200 5.416947 GTGGTCATTTACTCCGACACTATT 58.583 41.667 0.00 0.00 0.00 1.73
2937 6201 4.439700 CGTGGTCATTTACTCCGACACTAT 60.440 45.833 0.00 0.00 0.00 2.12
2938 6202 3.119743 CGTGGTCATTTACTCCGACACTA 60.120 47.826 0.00 0.00 0.00 2.74
2939 6203 2.352421 CGTGGTCATTTACTCCGACACT 60.352 50.000 0.00 0.00 0.00 3.55
2940 6204 1.990563 CGTGGTCATTTACTCCGACAC 59.009 52.381 0.00 0.00 0.00 3.67
2941 6205 1.887854 TCGTGGTCATTTACTCCGACA 59.112 47.619 0.00 0.00 0.00 4.35
2942 6206 2.094854 ACTCGTGGTCATTTACTCCGAC 60.095 50.000 0.00 0.00 0.00 4.79
2943 6207 2.165167 ACTCGTGGTCATTTACTCCGA 58.835 47.619 0.00 0.00 0.00 4.55
2944 6208 2.649331 ACTCGTGGTCATTTACTCCG 57.351 50.000 0.00 0.00 0.00 4.63
2945 6209 3.445857 GCTACTCGTGGTCATTTACTCC 58.554 50.000 0.00 0.00 0.00 3.85
2946 6210 3.119245 TGGCTACTCGTGGTCATTTACTC 60.119 47.826 0.00 0.00 0.00 2.59
2947 6211 2.829720 TGGCTACTCGTGGTCATTTACT 59.170 45.455 0.00 0.00 0.00 2.24
2948 6212 2.928116 GTGGCTACTCGTGGTCATTTAC 59.072 50.000 0.00 0.00 0.00 2.01
2949 6213 2.563620 TGTGGCTACTCGTGGTCATTTA 59.436 45.455 0.64 0.00 0.00 1.40
2950 6214 1.346395 TGTGGCTACTCGTGGTCATTT 59.654 47.619 0.64 0.00 0.00 2.32
2951 6215 0.973632 TGTGGCTACTCGTGGTCATT 59.026 50.000 0.64 0.00 0.00 2.57
2952 6216 1.137086 GATGTGGCTACTCGTGGTCAT 59.863 52.381 0.64 0.00 0.00 3.06
2953 6217 0.530744 GATGTGGCTACTCGTGGTCA 59.469 55.000 0.64 0.00 0.00 4.02
2954 6218 0.530744 TGATGTGGCTACTCGTGGTC 59.469 55.000 0.64 0.00 0.00 4.02
2955 6219 0.532573 CTGATGTGGCTACTCGTGGT 59.467 55.000 0.64 0.00 0.00 4.16
2956 6220 0.807667 GCTGATGTGGCTACTCGTGG 60.808 60.000 0.64 0.00 0.00 4.94
2957 6221 0.807667 GGCTGATGTGGCTACTCGTG 60.808 60.000 0.64 0.00 0.00 4.35
2958 6222 1.517832 GGCTGATGTGGCTACTCGT 59.482 57.895 0.64 0.00 0.00 4.18
2959 6223 1.227380 GGGCTGATGTGGCTACTCG 60.227 63.158 0.64 0.00 0.00 4.18
2960 6224 1.147153 GGGGCTGATGTGGCTACTC 59.853 63.158 0.64 0.00 0.00 2.59
2961 6225 2.378634 GGGGGCTGATGTGGCTACT 61.379 63.158 0.64 0.00 0.00 2.57
2962 6226 2.193248 GGGGGCTGATGTGGCTAC 59.807 66.667 0.00 0.00 0.00 3.58
2976 6240 2.297701 CGTCTTGAAATACCATGGGGG 58.702 52.381 18.09 0.00 44.81 5.40
2977 6241 2.943033 GACGTCTTGAAATACCATGGGG 59.057 50.000 18.09 0.00 41.29 4.96
2978 6242 2.607635 CGACGTCTTGAAATACCATGGG 59.392 50.000 18.09 0.00 0.00 4.00
2979 6243 2.607635 CCGACGTCTTGAAATACCATGG 59.392 50.000 11.19 11.19 0.00 3.66
2980 6244 2.607635 CCCGACGTCTTGAAATACCATG 59.392 50.000 14.70 0.00 0.00 3.66
2981 6245 2.419574 CCCCGACGTCTTGAAATACCAT 60.420 50.000 14.70 0.00 0.00 3.55
2982 6246 1.066716 CCCCGACGTCTTGAAATACCA 60.067 52.381 14.70 0.00 0.00 3.25
2983 6247 1.648504 CCCCGACGTCTTGAAATACC 58.351 55.000 14.70 0.00 0.00 2.73
2984 6248 1.004595 GCCCCGACGTCTTGAAATAC 58.995 55.000 14.70 0.00 0.00 1.89
2985 6249 0.108041 GGCCCCGACGTCTTGAAATA 60.108 55.000 14.70 0.00 0.00 1.40
2986 6250 1.376812 GGCCCCGACGTCTTGAAAT 60.377 57.895 14.70 0.00 0.00 2.17
2987 6251 2.031465 GGCCCCGACGTCTTGAAA 59.969 61.111 14.70 0.00 0.00 2.69
2988 6252 4.367023 CGGCCCCGACGTCTTGAA 62.367 66.667 14.70 0.00 42.83 2.69
3005 6269 3.984193 ATGCTTGAGGGGCGCAGTC 62.984 63.158 10.83 2.37 37.06 3.51
3006 6270 3.984193 GATGCTTGAGGGGCGCAGT 62.984 63.158 10.83 0.00 37.06 4.40
3007 6271 3.207669 GATGCTTGAGGGGCGCAG 61.208 66.667 10.83 0.00 37.06 5.18
3008 6272 3.565961 TTGATGCTTGAGGGGCGCA 62.566 57.895 10.83 0.00 38.14 6.09
3009 6273 2.275547 CTTTGATGCTTGAGGGGCGC 62.276 60.000 0.00 0.00 0.00 6.53
3010 6274 0.677731 TCTTTGATGCTTGAGGGGCG 60.678 55.000 0.00 0.00 0.00 6.13
3011 6275 0.813821 GTCTTTGATGCTTGAGGGGC 59.186 55.000 0.00 0.00 0.00 5.80
3012 6276 2.205022 TGTCTTTGATGCTTGAGGGG 57.795 50.000 0.00 0.00 0.00 4.79
3013 6277 3.057033 CCTTTGTCTTTGATGCTTGAGGG 60.057 47.826 0.00 0.00 0.00 4.30
3014 6278 3.822735 TCCTTTGTCTTTGATGCTTGAGG 59.177 43.478 0.00 0.00 0.00 3.86
3015 6279 4.320788 GGTCCTTTGTCTTTGATGCTTGAG 60.321 45.833 0.00 0.00 0.00 3.02
3016 6280 3.569701 GGTCCTTTGTCTTTGATGCTTGA 59.430 43.478 0.00 0.00 0.00 3.02
3017 6281 3.610114 CGGTCCTTTGTCTTTGATGCTTG 60.610 47.826 0.00 0.00 0.00 4.01
3018 6282 2.554032 CGGTCCTTTGTCTTTGATGCTT 59.446 45.455 0.00 0.00 0.00 3.91
3019 6283 2.154462 CGGTCCTTTGTCTTTGATGCT 58.846 47.619 0.00 0.00 0.00 3.79
3020 6284 1.401539 GCGGTCCTTTGTCTTTGATGC 60.402 52.381 0.00 0.00 0.00 3.91
3021 6285 1.200020 GGCGGTCCTTTGTCTTTGATG 59.800 52.381 0.00 0.00 0.00 3.07
3022 6286 1.073923 AGGCGGTCCTTTGTCTTTGAT 59.926 47.619 0.00 0.00 40.66 2.57
3023 6287 0.472471 AGGCGGTCCTTTGTCTTTGA 59.528 50.000 0.00 0.00 40.66 2.69
3024 6288 3.021451 AGGCGGTCCTTTGTCTTTG 57.979 52.632 0.00 0.00 40.66 2.77
3040 6304 3.406595 CTAGCCGGCCCCAAGAAGG 62.407 68.421 26.15 0.00 37.03 3.46
3041 6305 2.190578 CTAGCCGGCCCCAAGAAG 59.809 66.667 26.15 5.56 0.00 2.85
3042 6306 2.609610 ACTAGCCGGCCCCAAGAA 60.610 61.111 26.15 0.00 0.00 2.52
3043 6307 3.081409 GACTAGCCGGCCCCAAGA 61.081 66.667 26.15 0.14 0.00 3.02
3044 6308 4.176752 GGACTAGCCGGCCCCAAG 62.177 72.222 26.15 18.01 0.00 3.61
3048 6312 3.851128 GTCTGGACTAGCCGGCCC 61.851 72.222 26.15 18.27 43.24 5.80
3049 6313 4.208686 CGTCTGGACTAGCCGGCC 62.209 72.222 26.15 7.48 43.24 6.13
3050 6314 4.208686 CCGTCTGGACTAGCCGGC 62.209 72.222 21.89 21.89 41.48 6.13
3052 6316 4.208686 GGCCGTCTGGACTAGCCG 62.209 72.222 13.22 0.00 41.70 5.52
3053 6317 4.208686 CGGCCGTCTGGACTAGCC 62.209 72.222 19.50 16.55 43.41 3.93
3054 6318 4.208686 CCGGCCGTCTGGACTAGC 62.209 72.222 26.12 2.32 43.41 3.42
3055 6319 2.348888 AACCGGCCGTCTGGACTAG 61.349 63.158 26.12 7.62 43.41 2.57
3056 6320 2.283388 AACCGGCCGTCTGGACTA 60.283 61.111 26.12 0.00 43.41 2.59
3057 6321 4.003788 CAACCGGCCGTCTGGACT 62.004 66.667 26.12 0.00 43.41 3.85
3060 6324 4.077184 TAGCAACCGGCCGTCTGG 62.077 66.667 26.12 11.36 46.50 3.86
3061 6325 2.501223 TTCTAGCAACCGGCCGTCTG 62.501 60.000 26.12 20.97 46.50 3.51
3062 6326 2.227089 CTTCTAGCAACCGGCCGTCT 62.227 60.000 26.12 16.91 46.50 4.18
3063 6327 1.810030 CTTCTAGCAACCGGCCGTC 60.810 63.158 26.12 10.10 46.50 4.79
3064 6328 2.264794 CTTCTAGCAACCGGCCGT 59.735 61.111 26.12 9.63 46.50 5.68
3065 6329 2.511600 CCTTCTAGCAACCGGCCG 60.512 66.667 21.04 21.04 46.50 6.13
3066 6330 2.824489 GCCTTCTAGCAACCGGCC 60.824 66.667 0.00 0.00 46.50 6.13
3067 6331 3.195698 CGCCTTCTAGCAACCGGC 61.196 66.667 0.00 0.00 45.30 6.13
3068 6332 2.511600 CCGCCTTCTAGCAACCGG 60.512 66.667 0.00 0.00 0.00 5.28
3069 6333 3.195698 GCCGCCTTCTAGCAACCG 61.196 66.667 0.00 0.00 0.00 4.44
3070 6334 2.824489 GGCCGCCTTCTAGCAACC 60.824 66.667 0.71 0.00 0.00 3.77
3071 6335 2.046314 TGGCCGCCTTCTAGCAAC 60.046 61.111 11.61 0.00 0.00 4.17
3072 6336 2.046314 GTGGCCGCCTTCTAGCAA 60.046 61.111 11.61 0.00 0.00 3.91
3073 6337 4.451150 CGTGGCCGCCTTCTAGCA 62.451 66.667 11.56 0.00 0.00 3.49
3074 6338 4.143333 TCGTGGCCGCCTTCTAGC 62.143 66.667 11.56 0.00 0.00 3.42
3075 6339 1.739338 ATCTCGTGGCCGCCTTCTAG 61.739 60.000 11.56 5.77 0.00 2.43
3076 6340 1.756950 ATCTCGTGGCCGCCTTCTA 60.757 57.895 11.56 0.00 0.00 2.10
3077 6341 3.077556 ATCTCGTGGCCGCCTTCT 61.078 61.111 11.56 0.00 0.00 2.85
3078 6342 2.892425 CATCTCGTGGCCGCCTTC 60.892 66.667 11.56 3.08 0.00 3.46
3079 6343 4.473520 CCATCTCGTGGCCGCCTT 62.474 66.667 11.56 0.00 42.12 4.35
3087 6351 2.105128 GAGTCGGCCCATCTCGTG 59.895 66.667 0.00 0.00 0.00 4.35
3088 6352 2.280404 TAGGAGTCGGCCCATCTCGT 62.280 60.000 0.00 7.02 0.00 4.18
3089 6353 1.519751 CTAGGAGTCGGCCCATCTCG 61.520 65.000 0.00 0.00 0.00 4.04
3090 6354 1.811645 GCTAGGAGTCGGCCCATCTC 61.812 65.000 0.00 2.33 0.00 2.75
3091 6355 1.834822 GCTAGGAGTCGGCCCATCT 60.835 63.158 0.00 0.00 0.00 2.90
3092 6356 2.093537 CTGCTAGGAGTCGGCCCATC 62.094 65.000 2.51 0.00 0.00 3.51
3093 6357 2.041922 TGCTAGGAGTCGGCCCAT 60.042 61.111 0.00 0.00 0.00 4.00
3094 6358 2.759973 CTGCTAGGAGTCGGCCCA 60.760 66.667 2.51 0.00 0.00 5.36
3095 6359 3.541713 CCTGCTAGGAGTCGGCCC 61.542 72.222 10.65 0.00 37.67 5.80
3096 6360 4.228567 GCCTGCTAGGAGTCGGCC 62.229 72.222 10.65 0.00 37.67 6.13
3097 6361 4.577246 CGCCTGCTAGGAGTCGGC 62.577 72.222 6.81 4.87 37.67 5.54
3098 6362 3.905678 CCGCCTGCTAGGAGTCGG 61.906 72.222 19.31 19.31 37.67 4.79
3099 6363 4.577246 GCCGCCTGCTAGGAGTCG 62.577 72.222 7.79 7.79 37.67 4.18
3100 6364 4.228567 GGCCGCCTGCTAGGAGTC 62.229 72.222 10.65 0.00 37.67 3.36
3102 6366 4.537433 GTGGCCGCCTGCTAGGAG 62.537 72.222 11.61 3.88 37.67 3.69
3105 6369 4.845580 CTGGTGGCCGCCTGCTAG 62.846 72.222 34.52 20.45 40.92 3.42
3117 6381 3.775654 GAGTCGGCCTCCCTGGTG 61.776 72.222 0.00 0.00 38.35 4.17
3124 6388 2.494530 CCTGCTAGGAGTCGGCCTC 61.495 68.421 10.65 0.00 37.67 4.70
3125 6389 2.443016 CCTGCTAGGAGTCGGCCT 60.443 66.667 10.65 0.00 37.67 5.19
3126 6390 4.228567 GCCTGCTAGGAGTCGGCC 62.229 72.222 10.65 0.00 37.67 6.13
3127 6391 4.577246 CGCCTGCTAGGAGTCGGC 62.577 72.222 6.81 4.87 37.67 5.54
3128 6392 2.829003 TCGCCTGCTAGGAGTCGG 60.829 66.667 14.73 0.00 37.67 4.79
3129 6393 2.409651 GTCGCCTGCTAGGAGTCG 59.590 66.667 8.51 8.51 37.67 4.18
3130 6394 2.787567 GGGTCGCCTGCTAGGAGTC 61.788 68.421 10.65 0.00 37.67 3.36
3131 6395 2.760385 GGGTCGCCTGCTAGGAGT 60.760 66.667 10.65 0.00 37.67 3.85
3132 6396 3.541713 GGGGTCGCCTGCTAGGAG 61.542 72.222 3.88 3.88 37.67 3.69
3133 6397 4.075793 AGGGGTCGCCTGCTAGGA 62.076 66.667 7.84 0.00 37.67 2.94
3134 6398 3.541713 GAGGGGTCGCCTGCTAGG 61.542 72.222 14.22 0.00 38.80 3.02
3135 6399 3.905678 CGAGGGGTCGCCTGCTAG 61.906 72.222 14.22 0.00 0.00 3.42
3136 6400 4.753662 ACGAGGGGTCGCCTGCTA 62.754 66.667 14.22 0.00 36.44 3.49
3139 6403 3.358076 GAGAACGAGGGGTCGCCTG 62.358 68.421 14.22 8.34 36.44 4.85
3140 6404 3.069318 GAGAACGAGGGGTCGCCT 61.069 66.667 8.47 8.47 36.44 5.52
3141 6405 4.144703 GGAGAACGAGGGGTCGCC 62.145 72.222 0.00 0.00 36.44 5.54
3142 6406 3.069318 AGGAGAACGAGGGGTCGC 61.069 66.667 0.00 0.00 36.44 5.19
3143 6407 1.248785 TTCAGGAGAACGAGGGGTCG 61.249 60.000 0.00 0.00 39.31 4.79
3144 6408 0.533032 CTTCAGGAGAACGAGGGGTC 59.467 60.000 0.00 0.00 0.00 4.46
3145 6409 0.178929 ACTTCAGGAGAACGAGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
3146 6410 0.977395 AACTTCAGGAGAACGAGGGG 59.023 55.000 0.00 0.00 0.00 4.79
3147 6411 2.826725 ACTAACTTCAGGAGAACGAGGG 59.173 50.000 0.00 0.00 0.00 4.30
3148 6412 4.142425 GGTACTAACTTCAGGAGAACGAGG 60.142 50.000 0.00 0.00 0.00 4.63
3149 6413 4.142425 GGGTACTAACTTCAGGAGAACGAG 60.142 50.000 0.00 0.00 0.00 4.18
3150 6414 3.760684 GGGTACTAACTTCAGGAGAACGA 59.239 47.826 0.00 0.00 0.00 3.85
3151 6415 3.119209 GGGGTACTAACTTCAGGAGAACG 60.119 52.174 0.00 0.00 0.00 3.95
3152 6416 3.836562 TGGGGTACTAACTTCAGGAGAAC 59.163 47.826 0.00 0.00 0.00 3.01
3153 6417 4.136341 TGGGGTACTAACTTCAGGAGAA 57.864 45.455 0.00 0.00 0.00 2.87
3154 6418 3.839323 TGGGGTACTAACTTCAGGAGA 57.161 47.619 0.00 0.00 0.00 3.71
3155 6419 5.424252 TGTAATGGGGTACTAACTTCAGGAG 59.576 44.000 0.00 0.00 0.00 3.69
3156 6420 5.343715 TGTAATGGGGTACTAACTTCAGGA 58.656 41.667 0.00 0.00 0.00 3.86
3157 6421 5.687166 TGTAATGGGGTACTAACTTCAGG 57.313 43.478 0.00 0.00 0.00 3.86
3158 6422 5.579511 CGTTGTAATGGGGTACTAACTTCAG 59.420 44.000 0.00 0.00 0.00 3.02
3159 6423 5.245751 TCGTTGTAATGGGGTACTAACTTCA 59.754 40.000 0.00 0.00 0.00 3.02
3160 6424 5.578336 GTCGTTGTAATGGGGTACTAACTTC 59.422 44.000 0.00 0.00 0.00 3.01
3161 6425 5.482006 GTCGTTGTAATGGGGTACTAACTT 58.518 41.667 0.00 0.00 0.00 2.66
3162 6426 4.380867 CGTCGTTGTAATGGGGTACTAACT 60.381 45.833 0.00 0.00 0.00 2.24
3163 6427 3.859386 CGTCGTTGTAATGGGGTACTAAC 59.141 47.826 0.00 0.00 0.00 2.34
3164 6428 3.761218 TCGTCGTTGTAATGGGGTACTAA 59.239 43.478 0.00 0.00 0.00 2.24
3165 6429 3.351740 TCGTCGTTGTAATGGGGTACTA 58.648 45.455 0.00 0.00 0.00 1.82
3166 6430 2.165030 CTCGTCGTTGTAATGGGGTACT 59.835 50.000 0.00 0.00 0.00 2.73
3167 6431 2.164219 TCTCGTCGTTGTAATGGGGTAC 59.836 50.000 0.00 0.00 0.00 3.34
3168 6432 2.164219 GTCTCGTCGTTGTAATGGGGTA 59.836 50.000 0.00 0.00 0.00 3.69
3169 6433 1.067354 GTCTCGTCGTTGTAATGGGGT 60.067 52.381 0.00 0.00 0.00 4.95
3170 6434 1.636988 GTCTCGTCGTTGTAATGGGG 58.363 55.000 0.00 0.00 0.00 4.96
3171 6435 1.265568 CGTCTCGTCGTTGTAATGGG 58.734 55.000 0.00 0.00 0.00 4.00
3172 6436 1.265568 CCGTCTCGTCGTTGTAATGG 58.734 55.000 0.00 0.00 0.00 3.16
3173 6437 1.265568 CCCGTCTCGTCGTTGTAATG 58.734 55.000 0.00 0.00 0.00 1.90
3174 6438 0.171903 CCCCGTCTCGTCGTTGTAAT 59.828 55.000 0.00 0.00 0.00 1.89
3175 6439 1.580942 CCCCGTCTCGTCGTTGTAA 59.419 57.895 0.00 0.00 0.00 2.41
3176 6440 2.981560 GCCCCGTCTCGTCGTTGTA 61.982 63.158 0.00 0.00 0.00 2.41
3177 6441 4.353437 GCCCCGTCTCGTCGTTGT 62.353 66.667 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.