Multiple sequence alignment - TraesCS7B01G124900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G124900 chr7B 100.000 7732 0 0 1 7732 146046146 146053877 0.000000e+00 14279.0
1 TraesCS7B01G124900 chr7B 78.346 762 116 32 6024 6752 151064173 151064918 1.530000e-121 448.0
2 TraesCS7B01G124900 chr7B 86.053 337 34 9 7170 7504 723886665 723886340 4.440000e-92 350.0
3 TraesCS7B01G124900 chr7B 78.000 400 63 12 1020 1394 151063783 151064182 2.170000e-55 228.0
4 TraesCS7B01G124900 chr7B 83.523 176 25 4 7560 7732 255979612 255979438 2.230000e-35 161.0
5 TraesCS7B01G124900 chr7B 79.412 238 28 9 5134 5359 436977645 436977873 1.740000e-31 148.0
6 TraesCS7B01G124900 chr7D 92.398 1618 51 28 6139 7732 180218450 180220019 0.000000e+00 2241.0
7 TraesCS7B01G124900 chr7D 89.336 1838 113 26 2217 4027 180207762 180209543 0.000000e+00 2231.0
8 TraesCS7B01G124900 chr7D 98.540 959 14 0 971 1929 180206570 180207528 0.000000e+00 1694.0
9 TraesCS7B01G124900 chr7D 95.827 623 21 3 1 618 180205945 180206567 0.000000e+00 1002.0
10 TraesCS7B01G124900 chr7D 90.801 587 26 8 5358 5931 180216320 180216891 0.000000e+00 760.0
11 TraesCS7B01G124900 chr7D 87.751 547 51 14 4819 5359 565642497 565643033 6.590000e-175 625.0
12 TraesCS7B01G124900 chr7D 77.549 873 176 13 3814 4672 180079152 180080018 6.920000e-140 508.0
13 TraesCS7B01G124900 chr7D 86.164 477 50 10 824 1292 180984627 180984159 1.160000e-137 501.0
14 TraesCS7B01G124900 chr7D 83.244 561 61 14 6271 6817 180984159 180983618 1.170000e-132 484.0
15 TraesCS7B01G124900 chr7D 85.529 463 35 15 4805 5259 562408869 562409307 9.150000e-124 455.0
16 TraesCS7B01G124900 chr7D 98.104 211 4 0 5931 6141 180216864 180217074 1.230000e-97 368.0
17 TraesCS7B01G124900 chr7D 96.635 208 6 1 2007 2214 180207523 180207729 2.070000e-90 344.0
18 TraesCS7B01G124900 chr7D 89.560 182 11 2 4615 4788 180209536 180209717 2.810000e-54 224.0
19 TraesCS7B01G124900 chr7D 96.809 94 3 0 1919 2012 85908380 85908473 2.890000e-34 158.0
20 TraesCS7B01G124900 chr7D 79.679 187 26 8 7549 7731 192072283 192072461 2.930000e-24 124.0
21 TraesCS7B01G124900 chr7D 78.607 201 27 11 7515 7710 256154714 256154903 1.360000e-22 119.0
22 TraesCS7B01G124900 chr7D 78.325 203 30 9 7515 7710 432049356 432049551 1.360000e-22 119.0
23 TraesCS7B01G124900 chr7D 77.348 181 24 9 5475 5654 3555560 3555396 2.970000e-14 91.6
24 TraesCS7B01G124900 chr7A 95.743 1198 46 3 1 1196 184569273 184570467 0.000000e+00 1925.0
25 TraesCS7B01G124900 chr7A 92.464 1181 41 9 6595 7732 184586166 184587341 0.000000e+00 1644.0
26 TraesCS7B01G124900 chr7A 94.434 539 17 5 5931 6460 184585638 184586172 0.000000e+00 817.0
27 TraesCS7B01G124900 chr7A 94.007 534 23 4 5400 5931 184585138 184585664 0.000000e+00 800.0
28 TraesCS7B01G124900 chr7A 82.468 462 57 11 6270 6726 191173364 191173806 4.380000e-102 383.0
29 TraesCS7B01G124900 chr7A 86.350 337 33 9 7170 7504 518142805 518142480 9.540000e-94 355.0
30 TraesCS7B01G124900 chr7A 77.491 542 101 13 555 1083 191172176 191172709 9.750000e-79 305.0
31 TraesCS7B01G124900 chr7A 80.048 421 71 9 95 503 191171741 191172160 4.540000e-77 300.0
32 TraesCS7B01G124900 chr7A 85.621 153 19 3 7560 7710 383409304 383409153 2.890000e-34 158.0
33 TraesCS7B01G124900 chr4A 85.165 546 65 15 4819 5359 410048997 410049531 5.280000e-151 545.0
34 TraesCS7B01G124900 chr4A 78.717 686 105 21 6067 6726 615364135 615364805 3.340000e-113 420.0
35 TraesCS7B01G124900 chr4A 82.243 428 70 5 3841 4266 467169209 467168786 1.590000e-96 364.0
36 TraesCS7B01G124900 chr4A 86.431 339 29 12 7170 7504 104107165 104107490 9.540000e-94 355.0
37 TraesCS7B01G124900 chr4A 76.500 200 30 9 5457 5654 573687014 573686830 8.260000e-15 93.5
38 TraesCS7B01G124900 chr4A 77.714 175 22 9 5475 5648 659012665 659012823 2.970000e-14 91.6
39 TraesCS7B01G124900 chr3D 78.375 800 152 18 3817 4607 290193875 290193088 4.170000e-137 499.0
40 TraesCS7B01G124900 chr3D 75.840 774 156 22 3819 4578 236644614 236643858 1.590000e-96 364.0
41 TraesCS7B01G124900 chr5D 83.582 536 75 5 6217 6752 557952011 557951489 2.510000e-134 490.0
42 TraesCS7B01G124900 chr5D 80.030 661 93 14 6118 6752 552740291 552739644 3.290000e-123 453.0
43 TraesCS7B01G124900 chr5D 75.734 783 161 22 3809 4590 187937971 187938725 4.410000e-97 366.0
44 TraesCS7B01G124900 chr5D 83.774 265 29 6 7 257 552741751 552741487 1.000000e-58 239.0
45 TraesCS7B01G124900 chr5D 95.789 95 4 0 1921 2015 181883430 181883336 3.740000e-33 154.0
46 TraesCS7B01G124900 chr5D 80.829 193 25 2 6560 6752 552417110 552417290 2.910000e-29 141.0
47 TraesCS7B01G124900 chr5D 93.939 66 4 0 1329 1394 557952660 557952595 4.940000e-17 100.0
48 TraesCS7B01G124900 chrUn 77.197 899 162 22 2931 3808 54299500 54300376 1.170000e-132 484.0
49 TraesCS7B01G124900 chrUn 86.176 340 29 12 7170 7504 13809297 13808971 1.230000e-92 351.0
50 TraesCS7B01G124900 chrUn 95.050 101 5 0 1916 2016 9840359 9840459 8.030000e-35 159.0
51 TraesCS7B01G124900 chrUn 95.050 101 4 1 1910 2010 27476054 27475955 2.890000e-34 158.0
52 TraesCS7B01G124900 chr5B 73.778 1350 236 63 5 1299 697819095 697820381 2.580000e-114 424.0
53 TraesCS7B01G124900 chr5B 73.566 1290 239 51 5 1247 697807957 697809191 4.350000e-107 399.0
54 TraesCS7B01G124900 chr5B 80.000 430 59 16 6310 6726 697821803 697822218 7.590000e-75 292.0
55 TraesCS7B01G124900 chr5B 88.166 169 18 1 84 250 699282522 699282354 4.730000e-47 200.0
56 TraesCS7B01G124900 chr5B 78.689 305 35 10 5081 5359 331677477 331677177 7.970000e-40 176.0
57 TraesCS7B01G124900 chr5B 89.855 69 7 0 144 212 55611802 55611734 1.070000e-13 89.8
58 TraesCS7B01G124900 chr2B 87.719 342 38 3 5013 5351 27941425 27941765 5.620000e-106 396.0
59 TraesCS7B01G124900 chr2B 80.215 465 87 5 3817 4280 513276058 513276518 2.070000e-90 344.0
60 TraesCS7B01G124900 chr2B 89.431 246 23 3 7488 7732 723270180 723270423 2.710000e-79 307.0
61 TraesCS7B01G124900 chr2B 81.164 292 39 9 5081 5360 365954343 365954056 3.630000e-53 220.0
62 TraesCS7B01G124900 chr2B 78.477 302 37 11 5081 5360 159989122 159989417 1.030000e-38 172.0
63 TraesCS7B01G124900 chr2B 77.202 193 28 8 5457 5648 559926509 559926686 1.780000e-16 99.0
64 TraesCS7B01G124900 chr3A 82.192 438 68 10 3819 4253 323411228 323411658 1.230000e-97 368.0
65 TraesCS7B01G124900 chr3A 86.350 337 33 9 7170 7504 645800352 645800027 9.540000e-94 355.0
66 TraesCS7B01G124900 chr3A 80.349 458 87 3 3809 4266 267036227 267036681 2.070000e-90 344.0
67 TraesCS7B01G124900 chr3A 90.244 246 21 3 7488 7732 38326894 38327137 1.250000e-82 318.0
68 TraesCS7B01G124900 chr2A 86.686 338 29 11 7170 7504 279475245 279475569 2.050000e-95 361.0
69 TraesCS7B01G124900 chr2A 86.350 337 33 9 7170 7504 177894720 177894395 9.540000e-94 355.0
70 TraesCS7B01G124900 chr6D 80.667 450 82 5 3817 4264 181702809 181702363 2.070000e-90 344.0
71 TraesCS7B01G124900 chr6D 84.729 203 28 3 5160 5359 67955377 67955579 4.730000e-47 200.0
72 TraesCS7B01G124900 chr1D 77.215 474 94 4 6252 6725 34654683 34654224 1.650000e-66 265.0
73 TraesCS7B01G124900 chr1A 77.223 461 91 7 6265 6725 33227532 33227086 2.770000e-64 257.0
74 TraesCS7B01G124900 chr1A 76.382 199 31 8 5457 5654 546249129 546248946 8.260000e-15 93.5
75 TraesCS7B01G124900 chr1B 78.208 413 74 8 6318 6730 53075807 53075411 4.630000e-62 250.0
76 TraesCS7B01G124900 chr1B 79.377 257 31 10 5124 5359 69845345 69845600 2.230000e-35 161.0
77 TraesCS7B01G124900 chr2D 81.481 243 28 5 5134 5359 567788309 567788067 4.770000e-42 183.0
78 TraesCS7B01G124900 chr6A 79.297 256 31 9 5120 5363 52710089 52709844 8.030000e-35 159.0
79 TraesCS7B01G124900 chr3B 95.960 99 3 1 1925 2022 742109018 742108920 8.030000e-35 159.0
80 TraesCS7B01G124900 chr3B 93.204 103 7 0 1916 2018 790540239 790540341 1.340000e-32 152.0
81 TraesCS7B01G124900 chr3B 77.907 258 35 10 5124 5360 416578250 416578506 2.910000e-29 141.0
82 TraesCS7B01G124900 chr6B 97.802 91 2 0 1923 2013 716607873 716607783 2.890000e-34 158.0
83 TraesCS7B01G124900 chr6B 93.137 102 5 2 1912 2013 597987063 597986964 1.740000e-31 148.0
84 TraesCS7B01G124900 chr5A 94.845 97 5 0 1918 2014 331942244 331942340 1.340000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G124900 chr7B 146046146 146053877 7731 False 14279.000000 14279 100.000000 1 7732 1 chr7B.!!$F1 7731
1 TraesCS7B01G124900 chr7B 151063783 151064918 1135 False 338.000000 448 78.173000 1020 6752 2 chr7B.!!$F3 5732
2 TraesCS7B01G124900 chr7D 180216320 180220019 3699 False 1123.000000 2241 93.767667 5358 7732 3 chr7D.!!$F9 2374
3 TraesCS7B01G124900 chr7D 180205945 180209717 3772 False 1099.000000 2231 93.979600 1 4788 5 chr7D.!!$F8 4787
4 TraesCS7B01G124900 chr7D 565642497 565643033 536 False 625.000000 625 87.751000 4819 5359 1 chr7D.!!$F7 540
5 TraesCS7B01G124900 chr7D 180079152 180080018 866 False 508.000000 508 77.549000 3814 4672 1 chr7D.!!$F2 858
6 TraesCS7B01G124900 chr7D 180983618 180984627 1009 True 492.500000 501 84.704000 824 6817 2 chr7D.!!$R2 5993
7 TraesCS7B01G124900 chr7A 184569273 184570467 1194 False 1925.000000 1925 95.743000 1 1196 1 chr7A.!!$F1 1195
8 TraesCS7B01G124900 chr7A 184585138 184587341 2203 False 1087.000000 1644 93.635000 5400 7732 3 chr7A.!!$F2 2332
9 TraesCS7B01G124900 chr7A 191171741 191173806 2065 False 329.333333 383 80.002333 95 6726 3 chr7A.!!$F3 6631
10 TraesCS7B01G124900 chr4A 410048997 410049531 534 False 545.000000 545 85.165000 4819 5359 1 chr4A.!!$F2 540
11 TraesCS7B01G124900 chr4A 615364135 615364805 670 False 420.000000 420 78.717000 6067 6726 1 chr4A.!!$F3 659
12 TraesCS7B01G124900 chr3D 290193088 290193875 787 True 499.000000 499 78.375000 3817 4607 1 chr3D.!!$R2 790
13 TraesCS7B01G124900 chr3D 236643858 236644614 756 True 364.000000 364 75.840000 3819 4578 1 chr3D.!!$R1 759
14 TraesCS7B01G124900 chr5D 187937971 187938725 754 False 366.000000 366 75.734000 3809 4590 1 chr5D.!!$F1 781
15 TraesCS7B01G124900 chr5D 552739644 552741751 2107 True 346.000000 453 81.902000 7 6752 2 chr5D.!!$R2 6745
16 TraesCS7B01G124900 chr5D 557951489 557952660 1171 True 295.000000 490 88.760500 1329 6752 2 chr5D.!!$R3 5423
17 TraesCS7B01G124900 chrUn 54299500 54300376 876 False 484.000000 484 77.197000 2931 3808 1 chrUn.!!$F2 877
18 TraesCS7B01G124900 chr5B 697807957 697809191 1234 False 399.000000 399 73.566000 5 1247 1 chr5B.!!$F1 1242
19 TraesCS7B01G124900 chr5B 697819095 697822218 3123 False 358.000000 424 76.889000 5 6726 2 chr5B.!!$F2 6721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 847 1.933181 CATCGGCTTTCGTTGCAGATA 59.067 47.619 10.57 0.0 41.83 1.98 F
2207 2763 0.179000 AATAGAGCTTCCCACGCAGG 59.821 55.000 0.00 0.0 37.03 4.85 F
2886 3484 0.109597 CTCAATCCAAGCAACACGGC 60.110 55.000 0.00 0.0 0.00 5.68 F
4172 4794 0.035630 AGAGTGTCTGCATCAAGGCC 60.036 55.000 0.00 0.0 0.00 5.19 F
4306 4928 0.036388 TTTGGAGTCTCGATGGTGGC 60.036 55.000 0.00 0.0 0.00 5.01 F
4367 4993 0.103208 CCGCTAGCTTCCGATTGAGT 59.897 55.000 13.93 0.0 0.00 3.41 F
4445 5071 0.036388 ACACAATCACCGAATCCGCT 60.036 50.000 0.00 0.0 0.00 5.52 F
4963 5607 0.036388 ACCGAACGATGTCCTTGCAT 60.036 50.000 0.00 0.0 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2479 3077 1.079503 GCAGATCTCGTGTGAAACCC 58.920 55.000 0.00 0.0 34.36 4.11 R
4122 4744 0.250684 TGCGGTTTCTGCCAAGATGA 60.251 50.000 0.00 0.0 30.72 2.92 R
4502 5128 0.250234 TGATCCCTGCCAGTTCTTCG 59.750 55.000 0.00 0.0 0.00 3.79 R
5867 6529 0.031994 ATCCCTTTTGCACGCACAAC 59.968 50.000 0.00 0.0 0.00 3.32 R
6631 10150 0.397816 CTGGGATCTCTTCCTCGGGT 60.398 60.000 0.00 0.0 44.75 5.28 R
6635 10154 1.127343 CCACCTGGGATCTCTTCCTC 58.873 60.000 0.00 0.0 44.75 3.71 R
6672 10203 2.094182 GTGTGAGTCGCTCCTTAATCCA 60.094 50.000 5.11 0.0 0.00 3.41 R
6883 10460 2.186826 GCCCGTTGCAAGACACTGT 61.187 57.895 0.00 0.0 40.77 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
785 847 1.933181 CATCGGCTTTCGTTGCAGATA 59.067 47.619 10.57 0.00 41.83 1.98
1210 1739 4.411013 TCTTTCCTGAGTGTGATCTGAGA 58.589 43.478 0.00 0.00 0.00 3.27
1238 1767 5.533903 ACCATATTTATCCTTGAAGCTGCAG 59.466 40.000 10.11 10.11 0.00 4.41
1261 1790 2.699846 TGCCCTGCAAAATTTCAGAGTT 59.300 40.909 8.15 0.00 34.76 3.01
1500 2056 3.687125 TGTGTTTGAACTGGTAACCACA 58.313 40.909 0.00 0.00 0.00 4.17
1526 2082 6.204495 GGCTTAAATATCAGCAAGGAGAAGAG 59.796 42.308 4.42 0.00 37.81 2.85
1645 2201 9.783081 ACATAGATGAAACATAGCATCAATACA 57.217 29.630 0.00 0.00 42.52 2.29
1777 2333 0.459411 GCCTCTGCTCGAAAGTCTCC 60.459 60.000 0.00 0.00 33.53 3.71
1834 2390 3.213206 AGTTCTCAACTGCATCAACCA 57.787 42.857 0.00 0.00 41.01 3.67
1879 2435 4.559502 GCCTCATGAAGTCATAGCGTCATA 60.560 45.833 0.00 0.00 35.89 2.15
1893 2449 4.238514 AGCGTCATACAAAACAGTCTCTC 58.761 43.478 0.00 0.00 0.00 3.20
1929 2485 6.546395 CAATTGCACCAGATAACAAGTACTC 58.454 40.000 0.00 0.00 0.00 2.59
1930 2486 4.202245 TGCACCAGATAACAAGTACTCC 57.798 45.455 0.00 0.00 0.00 3.85
1931 2487 3.055385 TGCACCAGATAACAAGTACTCCC 60.055 47.826 0.00 0.00 0.00 4.30
1932 2488 3.197983 GCACCAGATAACAAGTACTCCCT 59.802 47.826 0.00 0.00 0.00 4.20
1933 2489 4.680975 GCACCAGATAACAAGTACTCCCTC 60.681 50.000 0.00 0.00 0.00 4.30
1934 2490 4.031611 ACCAGATAACAAGTACTCCCTCC 58.968 47.826 0.00 0.00 0.00 4.30
1935 2491 3.068307 CCAGATAACAAGTACTCCCTCCG 59.932 52.174 0.00 0.00 0.00 4.63
1936 2492 3.700038 CAGATAACAAGTACTCCCTCCGT 59.300 47.826 0.00 0.00 0.00 4.69
1937 2493 4.885907 CAGATAACAAGTACTCCCTCCGTA 59.114 45.833 0.00 0.00 0.00 4.02
1938 2494 5.359009 CAGATAACAAGTACTCCCTCCGTAA 59.641 44.000 0.00 0.00 0.00 3.18
1939 2495 5.954150 AGATAACAAGTACTCCCTCCGTAAA 59.046 40.000 0.00 0.00 0.00 2.01
1940 2496 3.949842 ACAAGTACTCCCTCCGTAAAC 57.050 47.619 0.00 0.00 0.00 2.01
1941 2497 3.504375 ACAAGTACTCCCTCCGTAAACT 58.496 45.455 0.00 0.00 0.00 2.66
1942 2498 4.666512 ACAAGTACTCCCTCCGTAAACTA 58.333 43.478 0.00 0.00 0.00 2.24
1943 2499 5.079643 ACAAGTACTCCCTCCGTAAACTAA 58.920 41.667 0.00 0.00 0.00 2.24
1944 2500 5.718607 ACAAGTACTCCCTCCGTAAACTAAT 59.281 40.000 0.00 0.00 0.00 1.73
1945 2501 6.891908 ACAAGTACTCCCTCCGTAAACTAATA 59.108 38.462 0.00 0.00 0.00 0.98
1946 2502 7.562821 ACAAGTACTCCCTCCGTAAACTAATAT 59.437 37.037 0.00 0.00 0.00 1.28
1947 2503 9.071276 CAAGTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
1948 2504 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
1949 2505 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1950 2506 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1951 2507 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1952 2508 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1953 2509 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1954 2510 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1955 2511 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1956 2512 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
1957 2513 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1958 2514 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1959 2515 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
1983 2539 9.331282 AGAATACTAAACTAGTGATCCAAATGC 57.669 33.333 0.00 0.00 39.81 3.56
1984 2540 9.331282 GAATACTAAACTAGTGATCCAAATGCT 57.669 33.333 0.00 0.00 39.81 3.79
1985 2541 8.894768 ATACTAAACTAGTGATCCAAATGCTC 57.105 34.615 0.00 0.00 39.81 4.26
1986 2542 6.951971 ACTAAACTAGTGATCCAAATGCTCT 58.048 36.000 0.00 0.00 37.69 4.09
1987 2543 7.398024 ACTAAACTAGTGATCCAAATGCTCTT 58.602 34.615 0.00 0.00 37.69 2.85
1988 2544 8.540388 ACTAAACTAGTGATCCAAATGCTCTTA 58.460 33.333 0.00 0.00 37.69 2.10
1989 2545 9.553064 CTAAACTAGTGATCCAAATGCTCTTAT 57.447 33.333 0.00 0.00 0.00 1.73
2006 2562 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
2007 2563 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
2008 2564 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2019 2575 8.712103 AGTTTACAGAGGGAGTACTTACTTTTT 58.288 33.333 0.00 0.00 36.50 1.94
2132 2688 7.124448 TGTTTACCTTCCCAACAAGTGTTAAAT 59.876 33.333 0.00 0.00 36.32 1.40
2133 2689 7.663043 TTACCTTCCCAACAAGTGTTAAATT 57.337 32.000 0.00 0.00 36.32 1.82
2182 2738 1.117142 TGGACCCTTTCGTTCCGAGT 61.117 55.000 0.00 0.00 37.14 4.18
2207 2763 0.179000 AATAGAGCTTCCCACGCAGG 59.821 55.000 0.00 0.00 37.03 4.85
2228 2814 4.411540 AGGTGAAGATGAGAACCATGCTAT 59.588 41.667 0.00 0.00 35.17 2.97
2229 2815 5.104193 AGGTGAAGATGAGAACCATGCTATT 60.104 40.000 0.00 0.00 35.17 1.73
2306 2892 9.092876 GTTTTAGTTATGGAGATGAGAACTCAG 57.907 37.037 10.26 0.00 43.61 3.35
2339 2925 8.338259 GCATATATACTTGGGCTGATAAATTCG 58.662 37.037 0.00 0.00 0.00 3.34
2348 2934 5.542635 TGGGCTGATAAATTCGTATACTCCT 59.457 40.000 0.56 0.00 0.00 3.69
2402 2988 7.063898 ACAGAATATTTCGAACACTGTGATCAG 59.936 37.037 15.86 8.85 39.99 2.90
2404 2990 7.984050 AGAATATTTCGAACACTGTGATCAGAT 59.016 33.333 15.86 8.53 38.67 2.90
2460 3058 8.989653 CCTTTACAAAGTTAAAAGGTTTCACA 57.010 30.769 12.81 0.00 42.78 3.58
2461 3059 8.865978 CCTTTACAAAGTTAAAAGGTTTCACAC 58.134 33.333 12.81 0.00 42.78 3.82
2462 3060 8.450385 TTTACAAAGTTAAAAGGTTTCACACG 57.550 30.769 0.00 0.00 0.00 4.49
2463 3061 6.256912 ACAAAGTTAAAAGGTTTCACACGA 57.743 33.333 0.00 0.00 0.00 4.35
2464 3062 6.679843 ACAAAGTTAAAAGGTTTCACACGAA 58.320 32.000 0.00 0.00 0.00 3.85
2465 3063 7.146648 ACAAAGTTAAAAGGTTTCACACGAAA 58.853 30.769 0.00 0.00 38.83 3.46
2466 3064 7.652507 ACAAAGTTAAAAGGTTTCACACGAAAA 59.347 29.630 0.00 0.00 42.66 2.29
2467 3065 8.652463 CAAAGTTAAAAGGTTTCACACGAAAAT 58.348 29.630 0.00 0.00 42.66 1.82
2468 3066 8.766000 AAGTTAAAAGGTTTCACACGAAAATT 57.234 26.923 0.00 0.00 42.66 1.82
2469 3067 8.766000 AGTTAAAAGGTTTCACACGAAAATTT 57.234 26.923 0.00 0.00 42.66 1.82
2470 3068 9.210329 AGTTAAAAGGTTTCACACGAAAATTTT 57.790 25.926 2.28 2.28 42.66 1.82
2521 3119 5.164012 GCTGATAAGCAGTAACATATGAGCG 60.164 44.000 10.38 0.00 46.62 5.03
2677 3275 6.808321 ACCATTCTTACCTAGCACAGATTA 57.192 37.500 0.00 0.00 0.00 1.75
2700 3298 4.312443 TGTTACTTCCGGTAGCTTGAAAG 58.688 43.478 8.18 0.66 33.61 2.62
2750 3348 5.288804 TGTACACGACTACTGTTTAAACCC 58.711 41.667 15.59 0.00 0.00 4.11
2833 3431 1.645710 ATTCTTCCACCGAGTGACCT 58.354 50.000 5.71 0.00 35.23 3.85
2843 3441 1.268794 CCGAGTGACCTGAGCGAATAG 60.269 57.143 0.00 0.00 0.00 1.73
2886 3484 0.109597 CTCAATCCAAGCAACACGGC 60.110 55.000 0.00 0.00 0.00 5.68
2983 3581 2.743718 CTCCACCAACCTCGCTGT 59.256 61.111 0.00 0.00 0.00 4.40
2988 3586 2.805353 CCAACCTCGCTGTCGTCG 60.805 66.667 0.00 0.00 36.96 5.12
3002 3601 2.753043 GTCGACTCCCCGCTGGTA 60.753 66.667 8.70 0.00 34.77 3.25
3030 3630 3.131823 TATCCCCTCCCCCTCCCC 61.132 72.222 0.00 0.00 0.00 4.81
3101 3701 1.302993 CGGGGATGGACGTTGGTTT 60.303 57.895 0.00 0.00 0.00 3.27
3327 3927 2.434884 CACATCGCAGGAACCGCT 60.435 61.111 0.00 0.00 0.00 5.52
3443 4044 2.508439 CACCGCCATCGCTTACGT 60.508 61.111 0.00 0.00 41.18 3.57
3462 4063 3.118629 ACGTGACTGCACCAATGATATCT 60.119 43.478 3.98 0.00 42.09 1.98
3487 4088 2.186384 GCGCTGCCTCATCTCTGT 59.814 61.111 0.00 0.00 0.00 3.41
3500 4101 1.442857 CTCTGTCCACGACTCACGC 60.443 63.158 0.00 0.00 46.94 5.34
3541 4156 3.774599 GATCCGGCCGCTCCCAATT 62.775 63.158 22.85 0.00 0.00 2.32
3547 4162 2.676121 CCGCTCCCAATTGTGCCA 60.676 61.111 4.43 0.00 0.00 4.92
3579 4194 2.036256 GGTGCTGCCCTTCCACAT 59.964 61.111 0.00 0.00 0.00 3.21
3591 4206 1.349026 CTTCCACATGTCACCACTCCT 59.651 52.381 0.00 0.00 0.00 3.69
3614 4229 4.821589 GCTACCGCCTTCGCTGCT 62.822 66.667 0.00 0.00 0.00 4.24
3673 4288 1.026182 GGTCATCATGGCGCACTTCA 61.026 55.000 10.83 0.00 0.00 3.02
3689 4304 5.295292 CGCACTTCATTGATATGGAAGAAGT 59.705 40.000 7.54 0.00 44.47 3.01
3699 4314 5.422331 TGATATGGAAGAAGTCGAGAAGGTT 59.578 40.000 0.00 0.00 0.00 3.50
3775 4395 1.005748 CTCCAAGCTGTCGTGCTGA 60.006 57.895 0.00 0.00 43.24 4.26
3841 4461 2.185387 GGTGGGGCCGTATACTATGAT 58.815 52.381 0.00 0.00 0.00 2.45
3848 4468 4.890581 GGGCCGTATACTATGATGATCTCT 59.109 45.833 0.00 0.00 0.00 3.10
4025 4646 2.027625 GTGGGAGCTCAACCGTTCG 61.028 63.158 17.19 0.00 0.00 3.95
4051 4673 2.092861 TCGAAAGGGTGAAGTCCAAACA 60.093 45.455 0.00 0.00 0.00 2.83
4106 4728 0.998669 CATCGCGCATGTACTCAACA 59.001 50.000 8.75 0.00 43.86 3.33
4141 4763 0.250684 TCATCTTGGCAGAAACCGCA 60.251 50.000 0.00 0.00 30.76 5.69
4157 4779 3.093057 ACCGCAGATGTTCTAGAAGAGT 58.907 45.455 5.12 0.00 0.00 3.24
4172 4794 0.035630 AGAGTGTCTGCATCAAGGCC 60.036 55.000 0.00 0.00 0.00 5.19
4202 4824 1.268283 GGCTGCTTGACCCTAGGACT 61.268 60.000 11.48 0.00 0.00 3.85
4217 4839 0.984995 GGACTAGGGAGGCACTTTGT 59.015 55.000 0.00 0.00 41.55 2.83
4268 4890 3.770040 CCGCGGATCTCCACCACA 61.770 66.667 24.07 0.00 35.14 4.17
4274 4896 1.296715 GATCTCCACCACAGCCGTT 59.703 57.895 0.00 0.00 0.00 4.44
4276 4898 2.469465 ATCTCCACCACAGCCGTTGG 62.469 60.000 0.00 0.00 0.00 3.77
4297 4919 2.027625 CCGCGGTGTTTGGAGTCTC 61.028 63.158 19.50 0.00 0.00 3.36
4299 4921 1.006571 GCGGTGTTTGGAGTCTCGA 60.007 57.895 0.00 0.00 0.00 4.04
4302 4924 1.726853 GGTGTTTGGAGTCTCGATGG 58.273 55.000 0.00 0.00 0.00 3.51
4303 4925 1.002087 GGTGTTTGGAGTCTCGATGGT 59.998 52.381 0.00 0.00 0.00 3.55
4306 4928 0.036388 TTTGGAGTCTCGATGGTGGC 60.036 55.000 0.00 0.00 0.00 5.01
4307 4929 1.899437 TTGGAGTCTCGATGGTGGCC 61.899 60.000 0.00 0.00 0.00 5.36
4311 4933 3.147595 TCTCGATGGTGGCCGGAG 61.148 66.667 5.05 0.00 0.00 4.63
4312 4934 4.899239 CTCGATGGTGGCCGGAGC 62.899 72.222 5.05 0.00 38.76 4.70
4315 4937 4.864334 GATGGTGGCCGGAGCAGG 62.864 72.222 5.05 0.00 42.56 4.85
4320 4942 4.815973 TGGCCGGAGCAGGGGTAT 62.816 66.667 5.05 0.00 42.56 2.73
4321 4943 3.942439 GGCCGGAGCAGGGGTATC 61.942 72.222 5.05 0.00 42.56 2.24
4322 4944 3.942439 GCCGGAGCAGGGGTATCC 61.942 72.222 5.05 0.00 39.53 2.59
4360 4986 1.357334 GAGACTCCGCTAGCTTCCG 59.643 63.158 13.93 0.00 0.00 4.30
4363 4989 0.386113 GACTCCGCTAGCTTCCGATT 59.614 55.000 13.93 0.00 0.00 3.34
4364 4990 0.103208 ACTCCGCTAGCTTCCGATTG 59.897 55.000 13.93 0.00 0.00 2.67
4367 4993 0.103208 CCGCTAGCTTCCGATTGAGT 59.897 55.000 13.93 0.00 0.00 3.41
4370 4996 3.553096 CCGCTAGCTTCCGATTGAGTATT 60.553 47.826 13.93 0.00 0.00 1.89
4394 5020 1.718757 GAGCGCGGATTGCCTCAATT 61.719 55.000 8.83 0.00 42.08 2.32
4398 5024 1.532505 CGCGGATTGCCTCAATTTGAG 60.533 52.381 17.78 17.78 43.91 3.02
4400 5026 1.202336 CGGATTGCCTCAATTTGAGCC 60.202 52.381 19.04 10.36 42.98 4.70
4427 5053 2.433146 GCCTACCTCCCCTCCGAAC 61.433 68.421 0.00 0.00 0.00 3.95
4434 5060 0.613260 CTCCCCTCCGAACACAATCA 59.387 55.000 0.00 0.00 0.00 2.57
4439 5065 1.606994 CCTCCGAACACAATCACCGAA 60.607 52.381 0.00 0.00 0.00 4.30
4445 5071 0.036388 ACACAATCACCGAATCCGCT 60.036 50.000 0.00 0.00 0.00 5.52
4502 5128 3.664025 CGAAAGCCAAGAACGAACAATTC 59.336 43.478 0.00 0.00 0.00 2.17
4520 5146 0.537188 TCGAAGAACTGGCAGGGATC 59.463 55.000 20.34 13.61 0.00 3.36
4521 5147 0.250234 CGAAGAACTGGCAGGGATCA 59.750 55.000 20.34 0.00 0.00 2.92
4533 5159 2.472029 CAGGGATCACTGGAGTACCTT 58.528 52.381 17.80 0.00 34.84 3.50
4570 5196 3.866582 CACCCGGATCTCAGCCCC 61.867 72.222 0.73 0.00 0.00 5.80
4636 5272 1.286260 GCGACGAGAAGTGGTCACT 59.714 57.895 0.00 0.00 44.94 3.41
4678 5314 2.202851 CTGGAGTAGGCTGCTGCG 60.203 66.667 18.24 9.96 40.82 5.18
4700 5336 4.489771 GAGGGTGGGGATGTGCGG 62.490 72.222 0.00 0.00 0.00 5.69
4720 5364 3.626924 ACCTCCACAGACGCACCC 61.627 66.667 0.00 0.00 0.00 4.61
4722 5366 4.742201 CTCCACAGACGCACCCGG 62.742 72.222 0.00 0.00 39.22 5.73
4743 5387 2.659610 GGAGGCAGGCGCTATAGG 59.340 66.667 7.64 0.00 38.60 2.57
4755 5399 1.152030 CTATAGGGAGCAGGGGCCA 60.152 63.158 4.39 0.00 42.56 5.36
4788 5432 2.358372 TGGAGCATAGCAGCGGTGA 61.358 57.895 20.69 0.00 40.15 4.02
4789 5433 1.884926 GGAGCATAGCAGCGGTGAC 60.885 63.158 20.69 9.89 40.15 3.67
4801 5445 4.961511 GGTGACGGTGCGTGCTGA 62.962 66.667 0.00 0.00 41.37 4.26
4802 5446 2.964925 GTGACGGTGCGTGCTGAA 60.965 61.111 0.00 0.00 41.37 3.02
4803 5447 2.030412 TGACGGTGCGTGCTGAAT 59.970 55.556 0.00 0.00 41.37 2.57
4804 5448 2.027073 TGACGGTGCGTGCTGAATC 61.027 57.895 0.00 0.00 41.37 2.52
4805 5449 2.740714 GACGGTGCGTGCTGAATCC 61.741 63.158 0.00 0.00 41.37 3.01
4806 5450 3.853330 CGGTGCGTGCTGAATCCG 61.853 66.667 0.00 0.00 0.00 4.18
4810 5454 2.325857 GCGTGCTGAATCCGCATC 59.674 61.111 2.11 0.00 46.26 3.91
4811 5455 2.622629 CGTGCTGAATCCGCATCG 59.377 61.111 2.11 5.15 39.89 3.84
4812 5456 2.325857 GTGCTGAATCCGCATCGC 59.674 61.111 2.11 0.00 39.89 4.58
4847 5491 0.532573 GCTCACGGAAGACAGGATGA 59.467 55.000 0.00 0.00 39.69 2.92
4851 5495 0.898789 ACGGAAGACAGGATGACGGT 60.899 55.000 0.00 0.00 39.69 4.83
4852 5496 0.458543 CGGAAGACAGGATGACGGTG 60.459 60.000 0.00 0.00 39.69 4.94
4853 5497 0.741221 GGAAGACAGGATGACGGTGC 60.741 60.000 0.00 0.00 39.69 5.01
4854 5498 0.741221 GAAGACAGGATGACGGTGCC 60.741 60.000 0.00 0.00 39.69 5.01
4855 5499 1.194781 AAGACAGGATGACGGTGCCT 61.195 55.000 0.00 0.00 39.69 4.75
4860 5504 2.183300 GATGACGGTGCCTGCGTA 59.817 61.111 0.00 0.00 0.00 4.42
4876 5520 1.963338 GTAGCCCGCAGCCATGATC 60.963 63.158 0.00 0.00 45.47 2.92
4900 5544 4.927782 TGCTCCACGTTGCCGCTT 62.928 61.111 0.00 0.00 37.70 4.68
4909 5553 2.904866 TTGCCGCTTGCTTCCGTT 60.905 55.556 0.00 0.00 42.00 4.44
4912 5556 2.358737 CCGCTTGCTTCCGTTCCT 60.359 61.111 0.00 0.00 0.00 3.36
4917 5561 1.373570 CTTGCTTCCGTTCCTCATCC 58.626 55.000 0.00 0.00 0.00 3.51
4925 5569 4.467084 TTCCTCATCCGGCCGCAC 62.467 66.667 22.85 0.00 0.00 5.34
4953 5597 2.025418 GTCCGTGCAACCGAACGAT 61.025 57.895 0.00 0.00 42.32 3.73
4962 5606 0.250124 AACCGAACGATGTCCTTGCA 60.250 50.000 0.00 0.00 0.00 4.08
4963 5607 0.036388 ACCGAACGATGTCCTTGCAT 60.036 50.000 0.00 0.00 0.00 3.96
4964 5608 0.652592 CCGAACGATGTCCTTGCATC 59.347 55.000 0.00 0.00 41.21 3.91
4971 5615 0.744414 ATGTCCTTGCATCCGAACGG 60.744 55.000 6.94 6.94 0.00 4.44
4984 5628 3.236003 GAACGGACCAGGAAGGCGT 62.236 63.158 0.00 0.00 43.14 5.68
5029 5673 2.048877 GCAGCCGCTGTTGCAATT 60.049 55.556 21.29 0.00 46.76 2.32
5036 5680 0.792640 CGCTGTTGCAATTCGAGACT 59.207 50.000 0.59 0.00 39.64 3.24
5039 5685 2.996621 GCTGTTGCAATTCGAGACTACT 59.003 45.455 0.59 0.00 39.41 2.57
5092 5738 1.664649 CTGCGAGCGAAACAGACCA 60.665 57.895 0.00 0.00 33.10 4.02
5093 5739 1.621301 CTGCGAGCGAAACAGACCAG 61.621 60.000 0.00 0.00 33.10 4.00
5096 5742 2.032681 AGCGAAACAGACCAGGGC 59.967 61.111 0.00 0.00 0.00 5.19
5097 5743 3.056328 GCGAAACAGACCAGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
5098 5744 2.429930 CGAAACAGACCAGGGCCA 59.570 61.111 6.18 0.00 0.00 5.36
5099 5745 1.002134 CGAAACAGACCAGGGCCAT 60.002 57.895 6.18 0.00 0.00 4.40
5135 5782 1.662446 GGTTTCGCGTTCGACAGGA 60.662 57.895 5.77 0.00 45.43 3.86
5158 5805 2.706190 CCTAGTACAGGCCCATTAAGCT 59.294 50.000 0.00 0.00 37.70 3.74
5161 5808 2.104963 AGTACAGGCCCATTAAGCTAGC 59.895 50.000 6.62 6.62 0.00 3.42
5170 5817 1.678101 CATTAAGCTAGCAGGCCCAAC 59.322 52.381 18.83 0.00 0.00 3.77
5251 5898 2.522638 CGCGCGATTTAGGTGGGAC 61.523 63.158 28.94 0.00 0.00 4.46
5276 5923 1.794222 CAGATCGGACGGCCAAAAC 59.206 57.895 8.76 0.00 0.00 2.43
5277 5924 1.376812 AGATCGGACGGCCAAAACC 60.377 57.895 8.76 0.00 0.00 3.27
5278 5925 1.376812 GATCGGACGGCCAAAACCT 60.377 57.895 8.76 0.00 0.00 3.50
5280 5927 0.325602 ATCGGACGGCCAAAACCTTA 59.674 50.000 8.76 0.00 0.00 2.69
5281 5928 0.108207 TCGGACGGCCAAAACCTTAA 59.892 50.000 8.76 0.00 0.00 1.85
5285 5932 3.386486 GGACGGCCAAAACCTTAAAAAG 58.614 45.455 0.00 0.00 0.00 2.27
5308 5956 4.444720 GTGACGATCCAACGGATAGAAATC 59.555 45.833 9.73 0.00 43.27 2.17
5325 5973 1.739750 ATCCTAATGGCCTGAGAGGG 58.260 55.000 3.32 0.00 35.37 4.30
5371 6020 5.617252 TGTATCTAAATTGATTCCCGGTCC 58.383 41.667 0.00 0.00 0.00 4.46
5424 6084 4.315588 CCTCAAGCAGGGCTCTTG 57.684 61.111 0.00 7.88 38.25 3.02
5443 6103 3.581265 TGATCCAGCCATTCAAGCATA 57.419 42.857 0.00 0.00 0.00 3.14
5454 6114 6.604795 AGCCATTCAAGCATACTTTTACAGAT 59.395 34.615 0.00 0.00 32.29 2.90
5554 6214 2.908688 AGGCACAAACCAATGGAAAC 57.091 45.000 6.16 0.00 0.00 2.78
5578 6238 7.388437 ACACTAACCCGTAATTTTCTATCACA 58.612 34.615 0.00 0.00 0.00 3.58
5590 6250 5.570262 TTTCTATCACAAACACGAACTCG 57.430 39.130 0.00 0.00 46.33 4.18
5591 6251 4.492791 TCTATCACAAACACGAACTCGA 57.507 40.909 6.05 0.00 43.02 4.04
5592 6252 4.862350 TCTATCACAAACACGAACTCGAA 58.138 39.130 6.05 0.00 43.02 3.71
5593 6253 3.854286 ATCACAAACACGAACTCGAAC 57.146 42.857 6.05 0.00 43.02 3.95
5594 6254 2.883574 TCACAAACACGAACTCGAACT 58.116 42.857 6.05 0.00 43.02 3.01
5596 6256 2.601314 CACAAACACGAACTCGAACTCA 59.399 45.455 6.05 0.00 43.02 3.41
5597 6257 2.858344 ACAAACACGAACTCGAACTCAG 59.142 45.455 6.05 0.00 43.02 3.35
5598 6258 1.488527 AACACGAACTCGAACTCAGC 58.511 50.000 6.05 0.00 43.02 4.26
5599 6259 0.384309 ACACGAACTCGAACTCAGCA 59.616 50.000 6.05 0.00 43.02 4.41
5600 6260 1.056103 CACGAACTCGAACTCAGCAG 58.944 55.000 6.05 0.00 43.02 4.24
5664 6326 1.873591 CTTGCTGTAACGCCTTCAGTT 59.126 47.619 0.00 0.00 35.75 3.16
5743 6405 4.711399 AGTTAGGTTTTACTGCTTCGGTT 58.289 39.130 0.00 0.00 0.00 4.44
5748 6410 2.876550 GTTTTACTGCTTCGGTTGTCCT 59.123 45.455 0.00 0.00 0.00 3.85
5838 6500 1.332144 TGGCCCTATAAGCGAACGGT 61.332 55.000 0.00 0.00 0.00 4.83
5867 6529 0.179045 CATCCAACCTTAGCCCGAGG 60.179 60.000 0.00 0.00 40.24 4.63
5919 6582 0.320374 GCCAACAGGGGTAAAAAGGC 59.680 55.000 0.00 0.00 37.04 4.35
5920 6583 2.009681 CCAACAGGGGTAAAAAGGCT 57.990 50.000 0.00 0.00 0.00 4.58
5921 6584 2.820105 GCCAACAGGGGTAAAAAGGCTA 60.820 50.000 0.00 0.00 37.89 3.93
5922 6585 3.502356 CCAACAGGGGTAAAAAGGCTAA 58.498 45.455 0.00 0.00 0.00 3.09
5923 6586 3.257375 CCAACAGGGGTAAAAAGGCTAAC 59.743 47.826 0.00 0.00 0.00 2.34
5924 6587 3.887916 ACAGGGGTAAAAAGGCTAACA 57.112 42.857 0.00 0.00 0.00 2.41
5925 6588 3.763057 ACAGGGGTAAAAAGGCTAACAG 58.237 45.455 0.00 0.00 0.00 3.16
5926 6589 3.139584 ACAGGGGTAAAAAGGCTAACAGT 59.860 43.478 0.00 0.00 0.00 3.55
5927 6590 4.351704 ACAGGGGTAAAAAGGCTAACAGTA 59.648 41.667 0.00 0.00 0.00 2.74
5928 6591 5.163066 ACAGGGGTAAAAAGGCTAACAGTAA 60.163 40.000 0.00 0.00 0.00 2.24
5929 6592 5.771165 CAGGGGTAAAAAGGCTAACAGTAAA 59.229 40.000 0.00 0.00 0.00 2.01
5930 6593 6.265876 CAGGGGTAAAAAGGCTAACAGTAAAA 59.734 38.462 0.00 0.00 0.00 1.52
5931 6594 6.840181 AGGGGTAAAAAGGCTAACAGTAAAAA 59.160 34.615 0.00 0.00 0.00 1.94
5932 6595 6.925165 GGGGTAAAAAGGCTAACAGTAAAAAC 59.075 38.462 0.00 0.00 0.00 2.43
5933 6596 7.417683 GGGGTAAAAAGGCTAACAGTAAAAACA 60.418 37.037 0.00 0.00 0.00 2.83
5934 6597 7.650504 GGGTAAAAAGGCTAACAGTAAAAACAG 59.349 37.037 0.00 0.00 0.00 3.16
5935 6598 7.650504 GGTAAAAAGGCTAACAGTAAAAACAGG 59.349 37.037 0.00 0.00 0.00 4.00
5936 6599 5.784578 AAAGGCTAACAGTAAAAACAGGG 57.215 39.130 0.00 0.00 0.00 4.45
5937 6600 3.763057 AGGCTAACAGTAAAAACAGGGG 58.237 45.455 0.00 0.00 0.00 4.79
5938 6601 3.139584 AGGCTAACAGTAAAAACAGGGGT 59.860 43.478 0.00 0.00 0.00 4.95
5939 6602 4.351704 AGGCTAACAGTAAAAACAGGGGTA 59.648 41.667 0.00 0.00 0.00 3.69
5940 6603 5.072055 GGCTAACAGTAAAAACAGGGGTAA 58.928 41.667 0.00 0.00 0.00 2.85
5941 6604 5.535783 GGCTAACAGTAAAAACAGGGGTAAA 59.464 40.000 0.00 0.00 0.00 2.01
5942 6605 6.040729 GGCTAACAGTAAAAACAGGGGTAAAA 59.959 38.462 0.00 0.00 0.00 1.52
5943 6606 7.417683 GGCTAACAGTAAAAACAGGGGTAAAAA 60.418 37.037 0.00 0.00 0.00 1.94
5944 6607 7.650504 GCTAACAGTAAAAACAGGGGTAAAAAG 59.349 37.037 0.00 0.00 0.00 2.27
5945 6608 6.474140 ACAGTAAAAACAGGGGTAAAAAGG 57.526 37.500 0.00 0.00 0.00 3.11
5946 6609 5.163385 ACAGTAAAAACAGGGGTAAAAAGGC 60.163 40.000 0.00 0.00 0.00 4.35
6143 8190 0.316841 TTTGAATTTCGCACAGGGGC 59.683 50.000 0.00 0.00 0.00 5.80
6351 9863 5.512473 TGGTTGCGAGTTTAATTGTAACAC 58.488 37.500 7.68 1.93 32.52 3.32
6360 9872 9.033262 CGAGTTTAATTGTAACACGTATTGTTC 57.967 33.333 13.12 0.00 46.05 3.18
6423 9942 2.621055 TCGTGTGCCAAAATAGCAAAGT 59.379 40.909 0.00 0.00 43.02 2.66
6460 9979 1.624813 CAATTTGGTGTGGGAGCCATT 59.375 47.619 0.00 0.00 35.28 3.16
6461 9980 1.269012 ATTTGGTGTGGGAGCCATTG 58.731 50.000 0.00 0.00 35.28 2.82
6594 10113 4.128643 GAGAATTGAGCTCCATGGAGAAG 58.871 47.826 40.29 19.55 44.53 2.85
6596 10115 3.842007 ATTGAGCTCCATGGAGAAGAG 57.158 47.619 40.29 18.80 44.53 2.85
6614 10133 1.297893 GCCATGCGAGAAATGCGAC 60.298 57.895 0.00 0.00 34.24 5.19
6623 10142 2.282555 CGAGAAATGCGACGACATTGAT 59.717 45.455 15.05 8.99 40.12 2.57
6624 10143 3.601356 GAGAAATGCGACGACATTGATG 58.399 45.455 15.05 0.00 40.12 3.07
6625 10144 3.261580 AGAAATGCGACGACATTGATGA 58.738 40.909 15.05 0.00 40.12 2.92
6626 10145 3.062639 AGAAATGCGACGACATTGATGAC 59.937 43.478 15.05 7.64 40.12 3.06
6627 10146 2.008752 ATGCGACGACATTGATGACA 57.991 45.000 0.00 0.00 0.00 3.58
6628 10147 2.008752 TGCGACGACATTGATGACAT 57.991 45.000 0.00 0.00 0.00 3.06
6629 10148 2.345876 TGCGACGACATTGATGACATT 58.654 42.857 0.00 0.00 0.00 2.71
6630 10149 2.094099 TGCGACGACATTGATGACATTG 59.906 45.455 0.00 0.00 34.71 2.82
6631 10150 2.348362 GCGACGACATTGATGACATTGA 59.652 45.455 0.00 0.00 33.37 2.57
6635 10154 2.030823 CGACATTGATGACATTGACCCG 59.969 50.000 0.00 0.00 33.37 5.28
6640 10165 1.905894 TGATGACATTGACCCGAGGAA 59.094 47.619 0.00 0.00 0.00 3.36
6672 10203 2.046892 ATGAAGCTCGCAGGCGTT 60.047 55.556 13.83 0.33 40.74 4.84
6824 10366 1.621317 TGCTTGATTGGTGTCGACCTA 59.379 47.619 14.12 0.00 43.58 3.08
6825 10367 2.037902 TGCTTGATTGGTGTCGACCTAA 59.962 45.455 14.12 9.05 43.58 2.69
6826 10368 3.071479 GCTTGATTGGTGTCGACCTAAA 58.929 45.455 14.12 4.72 43.58 1.85
6827 10369 3.120304 GCTTGATTGGTGTCGACCTAAAC 60.120 47.826 14.12 3.98 43.58 2.01
6828 10370 3.755112 TGATTGGTGTCGACCTAAACA 57.245 42.857 14.12 10.42 43.58 2.83
6883 10460 7.680442 TTTTAGCATGCACTAGTACAAATGA 57.320 32.000 21.98 0.00 0.00 2.57
7195 10773 7.503521 TTTATTGGAAATTTTGGCCAGTTTC 57.496 32.000 22.32 22.32 32.47 2.78
7355 10934 2.034001 GCACTTCACGTACACACTTCAC 60.034 50.000 0.00 0.00 0.00 3.18
7418 11003 1.071605 GGCACACAGACGAACTCATC 58.928 55.000 0.00 0.00 0.00 2.92
7429 11014 1.827969 CGAACTCATCTCCCTTCACCT 59.172 52.381 0.00 0.00 0.00 4.00
7461 11046 2.162906 AAGTGTCCCCCTGCCACAT 61.163 57.895 0.00 0.00 0.00 3.21
7462 11047 2.361610 GTGTCCCCCTGCCACATG 60.362 66.667 0.00 0.00 0.00 3.21
7471 11056 0.533491 CCTGCCACATGGACCAATTG 59.467 55.000 0.00 0.00 37.39 2.32
7710 11295 5.618056 ATCACTCATAAACACACTTGCAG 57.382 39.130 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.223032 TGAAACCCTAGCTAGAAGTGGAAG 59.777 45.833 22.70 2.43 0.00 3.46
81 82 1.143838 CATCTCGGCCGATGTTGGA 59.856 57.895 31.19 22.34 36.80 3.53
91 113 1.410517 TGAATCTGTCCTCATCTCGGC 59.589 52.381 0.00 0.00 0.00 5.54
291 324 1.884464 CTCCATGACGTCGGCCATG 60.884 63.158 11.62 17.59 39.72 3.66
292 325 2.501128 CTCCATGACGTCGGCCAT 59.499 61.111 11.62 0.00 0.00 4.40
1210 1739 6.718454 CAGCTTCAAGGATAAATATGGTCCAT 59.282 38.462 9.88 9.88 34.42 3.41
1238 1767 1.001181 TCTGAAATTTTGCAGGGCAGC 59.999 47.619 6.96 0.00 40.61 5.25
1261 1790 9.310449 ACTTAGAGAAGATTAAGTACCAGACAA 57.690 33.333 0.00 0.00 38.10 3.18
1500 2056 5.636903 TCTCCTTGCTGATATTTAAGCCT 57.363 39.130 4.20 0.00 38.71 4.58
1645 2201 5.957774 ACACATTTCCAGCCTTAAATACCAT 59.042 36.000 0.00 0.00 0.00 3.55
1777 2333 3.496155 GAGAAACTCGGTACTGTTACGG 58.504 50.000 0.64 0.00 0.00 4.02
1834 2390 3.768757 CCAGATCTTCAAGTGAGTCTCCT 59.231 47.826 0.00 0.00 0.00 3.69
1929 2485 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1930 2486 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1931 2487 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1932 2488 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1933 2489 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
1957 2513 9.331282 GCATTTGGATCACTAGTTTAGTATTCT 57.669 33.333 0.00 0.00 37.23 2.40
1958 2514 9.331282 AGCATTTGGATCACTAGTTTAGTATTC 57.669 33.333 0.00 0.00 37.23 1.75
1959 2515 9.331282 GAGCATTTGGATCACTAGTTTAGTATT 57.669 33.333 0.00 0.00 37.23 1.89
1960 2516 8.709308 AGAGCATTTGGATCACTAGTTTAGTAT 58.291 33.333 0.00 0.00 37.23 2.12
1961 2517 8.079211 AGAGCATTTGGATCACTAGTTTAGTA 57.921 34.615 0.00 0.00 37.23 1.82
1962 2518 6.951971 AGAGCATTTGGATCACTAGTTTAGT 58.048 36.000 0.00 0.00 40.28 2.24
1963 2519 7.856145 AAGAGCATTTGGATCACTAGTTTAG 57.144 36.000 0.00 0.00 33.23 1.85
1980 2536 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
1981 2537 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
1982 2538 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1990 2546 9.544579 AAGTAAGTACTCCCTCTGTAAACTAAT 57.455 33.333 0.00 0.00 34.99 1.73
1991 2547 8.946797 AAGTAAGTACTCCCTCTGTAAACTAA 57.053 34.615 0.00 0.00 34.99 2.24
1992 2548 8.946797 AAAGTAAGTACTCCCTCTGTAAACTA 57.053 34.615 0.00 0.00 34.99 2.24
1993 2549 7.852550 AAAGTAAGTACTCCCTCTGTAAACT 57.147 36.000 0.00 0.00 34.99 2.66
1994 2550 8.771766 CAAAAAGTAAGTACTCCCTCTGTAAAC 58.228 37.037 0.00 0.00 34.99 2.01
1995 2551 7.443272 GCAAAAAGTAAGTACTCCCTCTGTAAA 59.557 37.037 0.00 0.00 34.99 2.01
1996 2552 6.932960 GCAAAAAGTAAGTACTCCCTCTGTAA 59.067 38.462 0.00 0.00 34.99 2.41
1997 2553 6.042322 TGCAAAAAGTAAGTACTCCCTCTGTA 59.958 38.462 0.00 0.00 34.99 2.74
1998 2554 5.163237 TGCAAAAAGTAAGTACTCCCTCTGT 60.163 40.000 0.00 0.00 34.99 3.41
1999 2555 5.305585 TGCAAAAAGTAAGTACTCCCTCTG 58.694 41.667 0.00 0.00 34.99 3.35
2000 2556 5.562298 TGCAAAAAGTAAGTACTCCCTCT 57.438 39.130 0.00 0.00 34.99 3.69
2001 2557 5.181433 CCTTGCAAAAAGTAAGTACTCCCTC 59.819 44.000 0.00 0.00 38.16 4.30
2002 2558 5.070685 CCTTGCAAAAAGTAAGTACTCCCT 58.929 41.667 0.00 0.00 38.16 4.20
2003 2559 4.825634 ACCTTGCAAAAAGTAAGTACTCCC 59.174 41.667 0.00 0.00 38.16 4.30
2004 2560 5.278315 CCACCTTGCAAAAAGTAAGTACTCC 60.278 44.000 0.00 0.00 38.16 3.85
2005 2561 5.758924 CCACCTTGCAAAAAGTAAGTACTC 58.241 41.667 0.00 0.00 38.16 2.59
2006 2562 4.037565 GCCACCTTGCAAAAAGTAAGTACT 59.962 41.667 0.00 0.00 38.16 2.73
2007 2563 4.037565 AGCCACCTTGCAAAAAGTAAGTAC 59.962 41.667 0.00 0.00 38.16 2.73
2008 2564 4.037446 CAGCCACCTTGCAAAAAGTAAGTA 59.963 41.667 0.00 0.00 38.16 2.24
2009 2565 3.031013 AGCCACCTTGCAAAAAGTAAGT 58.969 40.909 0.00 0.00 38.16 2.24
2010 2566 3.181476 ACAGCCACCTTGCAAAAAGTAAG 60.181 43.478 0.00 0.00 39.38 2.34
2011 2567 2.763448 ACAGCCACCTTGCAAAAAGTAA 59.237 40.909 0.00 0.00 0.00 2.24
2019 2575 2.882137 GTTTACTTACAGCCACCTTGCA 59.118 45.455 0.00 0.00 0.00 4.08
2132 2688 3.115390 TCCCCCAATGTTTCCAACAAAA 58.885 40.909 0.00 0.00 45.86 2.44
2133 2689 2.764269 TCCCCCAATGTTTCCAACAAA 58.236 42.857 0.00 0.00 45.86 2.83
2207 2763 7.976135 ATAATAGCATGGTTCTCATCTTCAC 57.024 36.000 1.12 0.00 32.92 3.18
2306 2892 6.486657 TCAGCCCAAGTATATATGCTTCAAAC 59.513 38.462 12.58 4.28 30.06 2.93
2364 2950 8.007405 TCGAAATATTCTGTCTGACCATTCTA 57.993 34.615 5.17 0.00 0.00 2.10
2387 2973 5.443301 CGTTACAATCTGATCACAGTGTTCG 60.443 44.000 9.32 10.66 43.81 3.95
2402 2988 9.026074 TCCTTGAAAAATTGAAACGTTACAATC 57.974 29.630 0.00 0.00 35.99 2.67
2404 2990 8.244802 TCTCCTTGAAAAATTGAAACGTTACAA 58.755 29.630 0.00 0.00 0.00 2.41
2474 3072 4.275936 CAGATCTCGTGTGAAACCCTTTTT 59.724 41.667 0.00 0.00 34.36 1.94
2475 3073 3.815401 CAGATCTCGTGTGAAACCCTTTT 59.185 43.478 0.00 0.00 34.36 2.27
2476 3074 3.403038 CAGATCTCGTGTGAAACCCTTT 58.597 45.455 0.00 0.00 34.36 3.11
2477 3075 2.872038 GCAGATCTCGTGTGAAACCCTT 60.872 50.000 0.00 0.00 34.36 3.95
2478 3076 1.338200 GCAGATCTCGTGTGAAACCCT 60.338 52.381 0.00 0.00 34.36 4.34
2479 3077 1.079503 GCAGATCTCGTGTGAAACCC 58.920 55.000 0.00 0.00 34.36 4.11
2512 3110 7.704047 ACACAGCATATACTTATCGCTCATATG 59.296 37.037 0.00 0.00 34.26 1.78
2602 3200 8.251383 TCCTTGAGACCCTGTATAATTCTAAG 57.749 38.462 0.00 0.00 0.00 2.18
2616 3214 1.777272 AGGGCATATTCCTTGAGACCC 59.223 52.381 0.00 0.00 36.29 4.46
2677 3275 4.546829 TTCAAGCTACCGGAAGTAACAT 57.453 40.909 9.46 0.00 0.00 2.71
2715 3313 3.630769 AGTCGTGTACAAGACAGAACAGA 59.369 43.478 33.54 1.39 41.29 3.41
2750 3348 2.749076 TCGAAATCAAATGCACCAGGAG 59.251 45.455 0.00 0.00 0.00 3.69
2833 3431 0.454600 GACGGGTGTCTATTCGCTCA 59.545 55.000 0.00 0.00 42.08 4.26
2843 3441 1.810030 GATCTTGGCGACGGGTGTC 60.810 63.158 0.00 0.00 41.91 3.67
2886 3484 8.614469 GAGGACTCCATATTTTCTAAAGATGG 57.386 38.462 16.03 16.03 35.85 3.51
2912 3510 0.804989 GGAGCCATCTTCCGTTTGTG 59.195 55.000 0.00 0.00 0.00 3.33
2998 3597 0.487772 GGATAGGGAGGAGGCTACCA 59.512 60.000 0.00 0.00 0.00 3.25
3002 3601 1.710709 AGGGGATAGGGAGGAGGCT 60.711 63.158 0.00 0.00 0.00 4.58
3030 3630 2.822399 GGGTGTCGCCATAGGAGG 59.178 66.667 4.48 0.00 39.65 4.30
3031 3631 2.417516 CGGGTGTCGCCATAGGAG 59.582 66.667 4.48 0.00 39.65 3.69
3032 3632 3.151710 CCGGGTGTCGCCATAGGA 61.152 66.667 4.48 0.00 39.65 2.94
3033 3633 4.910585 GCCGGGTGTCGCCATAGG 62.911 72.222 2.18 5.67 39.65 2.57
3034 3634 3.792053 GAGCCGGGTGTCGCCATAG 62.792 68.421 12.94 0.00 39.65 2.23
3035 3635 3.845259 GAGCCGGGTGTCGCCATA 61.845 66.667 12.94 0.00 39.65 2.74
3308 3908 2.264480 CGGTTCCTGCGATGTGGA 59.736 61.111 0.00 0.00 0.00 4.02
3443 4044 3.200605 ACCAGATATCATTGGTGCAGTCA 59.799 43.478 14.25 0.00 45.66 3.41
3500 4101 0.515564 GGTGGAAATCGACACAACCG 59.484 55.000 6.27 0.00 39.31 4.44
3531 4146 1.926511 GACTGGCACAATTGGGAGCG 61.927 60.000 13.13 0.18 38.70 5.03
3579 4194 2.203938 GGGGGAGGAGTGGTGACA 60.204 66.667 0.00 0.00 38.70 3.58
3628 4243 3.318384 TTCAGCGGCAGCCACCTA 61.318 61.111 13.30 0.00 46.67 3.08
3665 4280 5.295292 ACTTCTTCCATATCAATGAAGTGCG 59.705 40.000 11.46 0.00 41.37 5.34
3673 4288 6.098982 ACCTTCTCGACTTCTTCCATATCAAT 59.901 38.462 0.00 0.00 0.00 2.57
3823 4443 3.178412 TCATCATAGTATACGGCCCCA 57.822 47.619 0.00 0.00 0.00 4.96
3841 4461 7.633789 AGCCCTAAACTTTAAATGAGAGATCA 58.366 34.615 0.00 0.00 0.00 2.92
3848 4468 4.585879 AGCGAGCCCTAAACTTTAAATGA 58.414 39.130 0.00 0.00 0.00 2.57
4025 4646 2.070028 GACTTCACCCTTTCGAAGCTC 58.930 52.381 0.00 0.00 41.95 4.09
4030 4651 2.092861 TGTTTGGACTTCACCCTTTCGA 60.093 45.455 0.00 0.00 0.00 3.71
4033 4654 3.094484 TGTGTTTGGACTTCACCCTTT 57.906 42.857 0.00 0.00 0.00 3.11
4051 4673 3.440173 CGTAGCCATTCAAGAAACCATGT 59.560 43.478 0.00 0.00 0.00 3.21
4091 4713 2.574322 CAACTTGTTGAGTACATGCGC 58.426 47.619 0.00 0.00 37.72 6.09
4122 4744 0.250684 TGCGGTTTCTGCCAAGATGA 60.251 50.000 0.00 0.00 30.72 2.92
4132 4754 4.220821 TCTTCTAGAACATCTGCGGTTTCT 59.779 41.667 0.00 10.35 0.00 2.52
4141 4763 4.769488 TGCAGACACTCTTCTAGAACATCT 59.231 41.667 0.00 0.00 0.00 2.90
4157 4779 1.300963 GGAGGCCTTGATGCAGACA 59.699 57.895 6.77 0.00 0.00 3.41
4280 4902 2.372690 CGAGACTCCAAACACCGCG 61.373 63.158 0.00 0.00 0.00 6.46
4285 4907 1.001974 CCACCATCGAGACTCCAAACA 59.998 52.381 0.00 0.00 0.00 2.83
4294 4916 3.147595 CTCCGGCCACCATCGAGA 61.148 66.667 2.24 0.00 0.00 4.04
4303 4925 4.815973 ATACCCCTGCTCCGGCCA 62.816 66.667 2.24 0.00 37.74 5.36
4306 4928 3.616721 CGGATACCCCTGCTCCGG 61.617 72.222 0.00 0.00 46.32 5.14
4316 4938 1.000496 CGTCTTCTTAGGGCGGATACC 60.000 57.143 0.00 0.00 0.00 2.73
4318 4940 2.228059 CTCGTCTTCTTAGGGCGGATA 58.772 52.381 0.00 0.00 0.00 2.59
4320 4942 1.664321 GCTCGTCTTCTTAGGGCGGA 61.664 60.000 0.00 0.00 0.00 5.54
4321 4943 1.227002 GCTCGTCTTCTTAGGGCGG 60.227 63.158 0.00 0.00 0.00 6.13
4322 4944 1.586564 CGCTCGTCTTCTTAGGGCG 60.587 63.158 0.00 0.00 35.54 6.13
4360 4986 1.396068 GCGCTCGCGAAATACTCAATC 60.396 52.381 16.26 0.00 42.83 2.67
4363 4989 3.688136 GCGCTCGCGAAATACTCA 58.312 55.556 16.26 0.00 42.83 3.41
4398 5024 3.810188 GGTAGGCCCTCCCTTGGC 61.810 72.222 0.00 0.00 43.06 4.52
4423 5049 1.060553 CGGATTCGGTGATTGTGTTCG 59.939 52.381 0.00 0.00 0.00 3.95
4427 5053 2.767536 AGCGGATTCGGTGATTGTG 58.232 52.632 0.00 0.00 45.98 3.33
4439 5065 2.107141 GCTAAGGTCGCAGCGGAT 59.893 61.111 16.42 1.29 0.00 4.18
4477 5103 0.865769 TTCGTTCTTGGCTTTCGAGC 59.134 50.000 0.00 0.00 32.39 5.03
4502 5128 0.250234 TGATCCCTGCCAGTTCTTCG 59.750 55.000 0.00 0.00 0.00 3.79
4520 5146 2.164624 CCTCGAGAAAGGTACTCCAGTG 59.835 54.545 15.71 0.00 38.49 3.66
4521 5147 2.448453 CCTCGAGAAAGGTACTCCAGT 58.552 52.381 15.71 0.00 38.49 4.00
4533 5159 2.283676 AGCCCGGAACCTCGAGAA 60.284 61.111 15.71 0.00 0.00 2.87
4570 5196 3.227276 CTCCGTCCATCCCCGAGG 61.227 72.222 0.00 0.00 0.00 4.63
4636 5272 2.363795 CGGTCTGCCTCTACCCCA 60.364 66.667 0.00 0.00 31.68 4.96
4678 5314 4.489771 CATCCCCACCCTCCACGC 62.490 72.222 0.00 0.00 0.00 5.34
4700 5336 4.314440 TGCGTCTGTGGAGGTGGC 62.314 66.667 0.00 0.00 0.00 5.01
4739 5383 2.449322 CTGGCCCCTGCTCCCTAT 60.449 66.667 0.00 0.00 37.74 2.57
4769 5413 2.176273 CACCGCTGCTATGCTCCAC 61.176 63.158 0.00 0.00 0.00 4.02
4788 5432 2.742372 GGATTCAGCACGCACCGT 60.742 61.111 0.00 0.00 42.36 4.83
4789 5433 3.853330 CGGATTCAGCACGCACCG 61.853 66.667 0.00 0.00 34.77 4.94
4812 5456 3.554692 GCGGATTCAGCGGACACG 61.555 66.667 0.00 0.00 44.63 4.49
4813 5457 2.125512 AGCGGATTCAGCGGACAC 60.126 61.111 3.10 0.00 40.04 3.67
4814 5458 2.184322 GAGCGGATTCAGCGGACA 59.816 61.111 3.10 0.00 40.04 4.02
4815 5459 2.167861 GTGAGCGGATTCAGCGGAC 61.168 63.158 3.10 1.03 40.04 4.79
4816 5460 2.184322 GTGAGCGGATTCAGCGGA 59.816 61.111 3.10 0.00 40.04 5.54
4817 5461 3.257561 CGTGAGCGGATTCAGCGG 61.258 66.667 3.10 0.00 40.04 5.52
4841 5485 4.457496 CGCAGGCACCGTCATCCT 62.457 66.667 0.00 0.00 0.00 3.24
4860 5504 3.486685 AGATCATGGCTGCGGGCT 61.487 61.111 21.03 0.00 41.46 5.19
4863 5507 0.940126 GTAACAGATCATGGCTGCGG 59.060 55.000 14.02 0.00 36.86 5.69
4876 5520 0.512952 GCAACGTGGAGCAGTAACAG 59.487 55.000 0.00 0.00 0.00 3.16
4900 5544 1.218047 CGGATGAGGAACGGAAGCA 59.782 57.895 0.00 0.00 0.00 3.91
4953 5597 1.375396 CCGTTCGGATGCAAGGACA 60.375 57.895 5.19 0.00 0.00 4.02
4962 5606 1.614241 CCTTCCTGGTCCGTTCGGAT 61.614 60.000 16.87 0.00 36.61 4.18
4963 5607 2.280552 CCTTCCTGGTCCGTTCGGA 61.281 63.158 10.00 10.00 0.00 4.55
4964 5608 2.264794 CCTTCCTGGTCCGTTCGG 59.735 66.667 4.74 4.74 0.00 4.30
4971 5615 1.671379 GGACAACGCCTTCCTGGTC 60.671 63.158 0.00 0.00 38.35 4.02
4997 5641 2.596923 TGCGCTGGATTTGCACCA 60.597 55.556 9.73 0.00 32.86 4.17
5029 5673 1.884579 GGTTGACCACAGTAGTCTCGA 59.115 52.381 0.61 0.00 35.21 4.04
5096 5742 0.600557 TAAAACAAGCACGGCCATGG 59.399 50.000 7.63 7.63 0.00 3.66
5097 5743 1.402720 CCTAAAACAAGCACGGCCATG 60.403 52.381 2.24 0.00 0.00 3.66
5098 5744 0.887933 CCTAAAACAAGCACGGCCAT 59.112 50.000 2.24 0.00 0.00 4.40
5099 5745 1.175983 CCCTAAAACAAGCACGGCCA 61.176 55.000 2.24 0.00 0.00 5.36
5106 5753 1.002142 ACGCGAAACCCTAAAACAAGC 60.002 47.619 15.93 0.00 0.00 4.01
5158 5805 0.698238 ACATTCAGTTGGGCCTGCTA 59.302 50.000 4.53 0.00 32.32 3.49
5161 5808 1.171308 CTGACATTCAGTTGGGCCTG 58.829 55.000 4.53 0.00 39.58 4.85
5170 5817 4.524316 TTTTTGGGCATCTGACATTCAG 57.476 40.909 0.00 0.00 45.59 3.02
5234 5881 0.103572 TAGTCCCACCTAAATCGCGC 59.896 55.000 0.00 0.00 0.00 6.86
5251 5898 0.318275 GCCGTCCGATCTGCTCTTAG 60.318 60.000 0.00 0.00 0.00 2.18
5276 5923 4.378046 CCGTTGGATCGTCACTTTTTAAGG 60.378 45.833 0.00 0.00 0.00 2.69
5277 5924 4.449743 TCCGTTGGATCGTCACTTTTTAAG 59.550 41.667 0.00 0.00 0.00 1.85
5278 5925 4.378774 TCCGTTGGATCGTCACTTTTTAA 58.621 39.130 0.00 0.00 0.00 1.52
5280 5927 2.841215 TCCGTTGGATCGTCACTTTTT 58.159 42.857 0.00 0.00 0.00 1.94
5281 5928 2.536761 TCCGTTGGATCGTCACTTTT 57.463 45.000 0.00 0.00 0.00 2.27
5285 5932 3.431922 TTCTATCCGTTGGATCGTCAC 57.568 47.619 0.71 0.00 42.11 3.67
5325 5973 6.261826 ACATTATAACTGAGCATCTTTCCTGC 59.738 38.462 0.00 0.00 39.97 4.85
5328 5976 9.717942 AGATACATTATAACTGAGCATCTTTCC 57.282 33.333 0.00 0.00 34.92 3.13
5422 6082 2.219080 TGCTTGAATGGCTGGATCAA 57.781 45.000 0.00 0.00 0.00 2.57
5424 6084 3.484407 AGTATGCTTGAATGGCTGGATC 58.516 45.455 0.00 0.00 0.00 3.36
5517 6177 1.156736 CTTTGCGGGGTTACAGACTG 58.843 55.000 0.00 0.00 0.00 3.51
5554 6214 7.837202 TGTGATAGAAAATTACGGGTTAGTG 57.163 36.000 0.00 0.00 0.00 2.74
5578 6238 1.859080 GCTGAGTTCGAGTTCGTGTTT 59.141 47.619 1.07 0.00 40.80 2.83
5590 6250 1.888512 TGAATTTGGGCTGCTGAGTTC 59.111 47.619 0.00 0.00 0.00 3.01
5591 6251 1.891150 CTGAATTTGGGCTGCTGAGTT 59.109 47.619 0.00 0.00 0.00 3.01
5592 6252 1.542492 CTGAATTTGGGCTGCTGAGT 58.458 50.000 0.00 0.00 0.00 3.41
5593 6253 0.815734 CCTGAATTTGGGCTGCTGAG 59.184 55.000 0.00 0.00 0.00 3.35
5594 6254 0.612732 CCCTGAATTTGGGCTGCTGA 60.613 55.000 0.00 0.00 37.99 4.26
5596 6256 0.613012 GTCCCTGAATTTGGGCTGCT 60.613 55.000 11.40 0.00 44.23 4.24
5597 6257 0.899717 TGTCCCTGAATTTGGGCTGC 60.900 55.000 11.40 0.00 44.23 5.25
5598 6258 1.547372 CTTGTCCCTGAATTTGGGCTG 59.453 52.381 11.40 0.80 44.23 4.85
5599 6259 1.428912 TCTTGTCCCTGAATTTGGGCT 59.571 47.619 11.40 0.00 44.23 5.19
5600 6260 1.923356 TCTTGTCCCTGAATTTGGGC 58.077 50.000 11.40 8.14 44.23 5.36
5664 6326 3.328931 AGAGGAGCAGGATCAAAGTGAAA 59.671 43.478 0.00 0.00 0.00 2.69
5694 6356 1.342275 CCTCTTCCATTCATTGGGGCA 60.342 52.381 0.00 0.00 46.45 5.36
5743 6405 2.668632 GGATGGGTTGCGAGGACA 59.331 61.111 0.00 0.00 0.00 4.02
5748 6410 3.599285 GACGTGGGATGGGTTGCGA 62.599 63.158 0.00 0.00 0.00 5.10
5798 6460 1.600916 GGACAGTGAGTGGGTTGCC 60.601 63.158 0.00 0.00 0.00 4.52
5838 6500 2.598787 GGTTGGATGACCGGTGGGA 61.599 63.158 14.63 0.00 39.42 4.37
5847 6509 0.830648 CTCGGGCTAAGGTTGGATGA 59.169 55.000 0.00 0.00 0.00 2.92
5867 6529 0.031994 ATCCCTTTTGCACGCACAAC 59.968 50.000 0.00 0.00 0.00 3.32
5919 6582 8.139350 CCTTTTTACCCCTGTTTTTACTGTTAG 58.861 37.037 0.00 0.00 0.00 2.34
5920 6583 7.417683 GCCTTTTTACCCCTGTTTTTACTGTTA 60.418 37.037 0.00 0.00 0.00 2.41
5921 6584 6.630863 GCCTTTTTACCCCTGTTTTTACTGTT 60.631 38.462 0.00 0.00 0.00 3.16
5922 6585 5.163385 GCCTTTTTACCCCTGTTTTTACTGT 60.163 40.000 0.00 0.00 0.00 3.55
5923 6586 5.069914 AGCCTTTTTACCCCTGTTTTTACTG 59.930 40.000 0.00 0.00 0.00 2.74
5924 6587 5.213519 AGCCTTTTTACCCCTGTTTTTACT 58.786 37.500 0.00 0.00 0.00 2.24
5925 6588 5.540400 AGCCTTTTTACCCCTGTTTTTAC 57.460 39.130 0.00 0.00 0.00 2.01
5926 6589 6.610425 TGTTAGCCTTTTTACCCCTGTTTTTA 59.390 34.615 0.00 0.00 0.00 1.52
5927 6590 5.425862 TGTTAGCCTTTTTACCCCTGTTTTT 59.574 36.000 0.00 0.00 0.00 1.94
5928 6591 4.963628 TGTTAGCCTTTTTACCCCTGTTTT 59.036 37.500 0.00 0.00 0.00 2.43
5929 6592 4.548669 TGTTAGCCTTTTTACCCCTGTTT 58.451 39.130 0.00 0.00 0.00 2.83
5930 6593 4.149598 CTGTTAGCCTTTTTACCCCTGTT 58.850 43.478 0.00 0.00 0.00 3.16
5931 6594 3.139584 ACTGTTAGCCTTTTTACCCCTGT 59.860 43.478 0.00 0.00 0.00 4.00
5932 6595 3.763057 ACTGTTAGCCTTTTTACCCCTG 58.237 45.455 0.00 0.00 0.00 4.45
5933 6596 5.587760 TTACTGTTAGCCTTTTTACCCCT 57.412 39.130 0.00 0.00 0.00 4.79
5934 6597 6.449698 GTTTTACTGTTAGCCTTTTTACCCC 58.550 40.000 0.00 0.00 0.00 4.95
5935 6598 6.040729 TGGTTTTACTGTTAGCCTTTTTACCC 59.959 38.462 0.00 0.00 0.00 3.69
5936 6599 7.041635 TGGTTTTACTGTTAGCCTTTTTACC 57.958 36.000 0.00 0.00 0.00 2.85
5937 6600 7.811236 GGATGGTTTTACTGTTAGCCTTTTTAC 59.189 37.037 0.00 0.00 0.00 2.01
5938 6601 7.506261 TGGATGGTTTTACTGTTAGCCTTTTTA 59.494 33.333 0.00 0.00 0.00 1.52
5939 6602 6.325286 TGGATGGTTTTACTGTTAGCCTTTTT 59.675 34.615 0.00 0.00 0.00 1.94
5940 6603 5.836358 TGGATGGTTTTACTGTTAGCCTTTT 59.164 36.000 0.00 0.00 0.00 2.27
5941 6604 5.390387 TGGATGGTTTTACTGTTAGCCTTT 58.610 37.500 0.00 0.00 0.00 3.11
5942 6605 4.993028 TGGATGGTTTTACTGTTAGCCTT 58.007 39.130 0.00 0.00 0.00 4.35
5943 6606 4.042934 ACTGGATGGTTTTACTGTTAGCCT 59.957 41.667 0.00 0.00 0.00 4.58
5944 6607 4.156008 CACTGGATGGTTTTACTGTTAGCC 59.844 45.833 0.00 0.00 0.00 3.93
5945 6608 4.156008 CCACTGGATGGTTTTACTGTTAGC 59.844 45.833 0.00 0.00 44.46 3.09
5946 6609 5.880054 CCACTGGATGGTTTTACTGTTAG 57.120 43.478 0.00 0.00 44.46 2.34
6143 8190 4.067896 CAGGATTCCTATGAAATCACGGG 58.932 47.826 4.51 0.00 33.32 5.28
6192 8627 7.885009 TGGAAGATCTGCATGAAATAAATCA 57.115 32.000 2.29 0.00 0.00 2.57
6351 9863 9.158364 GCATGTACATAGAAAATGAACAATACG 57.842 33.333 8.32 0.00 0.00 3.06
6360 9872 9.016623 CAACTTCATGCATGTACATAGAAAATG 57.983 33.333 25.43 8.23 0.00 2.32
6423 9942 2.275134 TTGGTCTTCTCAGCAATGCA 57.725 45.000 8.35 0.00 0.00 3.96
6460 9979 3.507162 TCAGGTGCTTCAAATCCTTCA 57.493 42.857 0.00 0.00 0.00 3.02
6461 9980 3.823304 AGTTCAGGTGCTTCAAATCCTTC 59.177 43.478 0.00 0.00 0.00 3.46
6594 10113 1.010350 CGCATTTCTCGCATGGCTC 60.010 57.895 0.00 0.00 0.00 4.70
6596 10115 1.297893 GTCGCATTTCTCGCATGGC 60.298 57.895 0.00 0.00 0.00 4.40
6614 10133 2.030823 CGGGTCAATGTCATCAATGTCG 59.969 50.000 0.00 0.00 0.00 4.35
6623 10142 1.550524 CTCTTCCTCGGGTCAATGTCA 59.449 52.381 0.00 0.00 0.00 3.58
6624 10143 1.825474 TCTCTTCCTCGGGTCAATGTC 59.175 52.381 0.00 0.00 0.00 3.06
6625 10144 1.938585 TCTCTTCCTCGGGTCAATGT 58.061 50.000 0.00 0.00 0.00 2.71
6626 10145 2.224161 GGATCTCTTCCTCGGGTCAATG 60.224 54.545 0.00 0.00 41.78 2.82
6627 10146 2.043227 GGATCTCTTCCTCGGGTCAAT 58.957 52.381 0.00 0.00 41.78 2.57
6628 10147 1.486211 GGATCTCTTCCTCGGGTCAA 58.514 55.000 0.00 0.00 41.78 3.18
6629 10148 0.397254 GGGATCTCTTCCTCGGGTCA 60.397 60.000 0.00 0.00 44.75 4.02
6630 10149 0.397254 TGGGATCTCTTCCTCGGGTC 60.397 60.000 0.00 0.00 44.75 4.46
6631 10150 0.397816 CTGGGATCTCTTCCTCGGGT 60.398 60.000 0.00 0.00 44.75 5.28
6635 10154 1.127343 CCACCTGGGATCTCTTCCTC 58.873 60.000 0.00 0.00 44.75 3.71
6672 10203 2.094182 GTGTGAGTCGCTCCTTAATCCA 60.094 50.000 5.11 0.00 0.00 3.41
6824 10366 5.473931 CATCTAGACTGCAGTACACTGTTT 58.526 41.667 21.73 0.00 45.45 2.83
6825 10367 4.619394 GCATCTAGACTGCAGTACACTGTT 60.619 45.833 21.73 0.00 45.45 3.16
6826 10368 3.119316 GCATCTAGACTGCAGTACACTGT 60.119 47.826 21.73 1.61 45.45 3.55
6827 10369 3.119352 TGCATCTAGACTGCAGTACACTG 60.119 47.826 21.73 14.43 44.30 3.66
6828 10370 3.092301 TGCATCTAGACTGCAGTACACT 58.908 45.455 21.73 15.44 44.30 3.55
6883 10460 2.186826 GCCCGTTGCAAGACACTGT 61.187 57.895 0.00 0.00 40.77 3.55
6902 10479 8.552296 ACATGGATCAGGTTTTAGAGTTTCTAT 58.448 33.333 0.00 0.00 0.00 1.98
7261 10840 6.206634 CCAACCAAGCAATAAACTCTGTCTAA 59.793 38.462 0.00 0.00 0.00 2.10
7323 10902 2.151202 CGTGAAGTGCTTTATGTGGGT 58.849 47.619 0.00 0.00 0.00 4.51
7355 10934 5.446143 AGAGTGTGTGTTCTCTCTGTAAG 57.554 43.478 0.00 0.00 36.45 2.34
7418 11003 0.771127 TGGGAAACAGGTGAAGGGAG 59.229 55.000 0.00 0.00 0.00 4.30
7429 11014 3.486383 GGACACTTGAGAATGGGAAACA 58.514 45.455 0.00 0.00 0.00 2.83
7606 11191 7.282585 TCATGGGTTATAAAGAGAACCATCAG 58.717 38.462 6.17 0.00 46.96 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.