Multiple sequence alignment - TraesCS7B01G124400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G124400 chr7B 100.000 4881 0 0 1 4881 145712958 145708078 0.000000e+00 9014.0
1 TraesCS7B01G124400 chr7B 85.671 1319 170 12 2484 3794 145697362 145696055 0.000000e+00 1371.0
2 TraesCS7B01G124400 chr7B 79.721 1504 260 27 1814 3314 145740243 145738782 0.000000e+00 1046.0
3 TraesCS7B01G124400 chr7B 82.812 896 129 18 1334 2213 145698712 145697826 0.000000e+00 778.0
4 TraesCS7B01G124400 chr7B 80.947 845 150 8 2444 3287 48050342 48049508 0.000000e+00 658.0
5 TraesCS7B01G124400 chr7B 93.207 368 21 3 1 366 52642086 52641721 5.560000e-149 538.0
6 TraesCS7B01G124400 chr7B 85.465 516 25 10 1 467 586830236 586830750 4.390000e-135 492.0
7 TraesCS7B01G124400 chr7B 86.747 415 47 3 3393 3806 145738673 145738266 5.760000e-124 455.0
8 TraesCS7B01G124400 chr7B 94.488 127 5 2 342 467 52641702 52641577 1.390000e-45 195.0
9 TraesCS7B01G124400 chr7B 94.488 127 5 2 342 467 52662136 52662011 1.390000e-45 195.0
10 TraesCS7B01G124400 chr7D 95.905 4054 128 17 840 4881 179523635 179519608 0.000000e+00 6532.0
11 TraesCS7B01G124400 chr7D 84.621 1372 188 15 2434 3794 179508973 179507614 0.000000e+00 1343.0
12 TraesCS7B01G124400 chr7D 81.730 1549 251 20 2264 3802 179536199 179534673 0.000000e+00 1264.0
13 TraesCS7B01G124400 chr7D 83.784 888 128 12 1334 2213 179510088 179509209 0.000000e+00 828.0
14 TraesCS7B01G124400 chr7D 82.167 886 143 13 1319 2198 179537090 179536214 0.000000e+00 747.0
15 TraesCS7B01G124400 chr7D 84.889 225 28 4 1358 1582 94116018 94115800 6.360000e-54 222.0
16 TraesCS7B01G124400 chr7D 77.311 238 50 3 3018 3253 17860145 17860380 2.370000e-28 137.0
17 TraesCS7B01G124400 chr7A 95.724 1520 62 3 2580 4097 183918191 183916673 0.000000e+00 2444.0
18 TraesCS7B01G124400 chr7A 80.751 2504 380 64 1333 3794 183858669 183856226 0.000000e+00 1860.0
19 TraesCS7B01G124400 chr7A 95.758 1155 29 2 1429 2583 183920896 183919762 0.000000e+00 1844.0
20 TraesCS7B01G124400 chr7A 82.025 1452 224 24 2354 3793 183950214 183948788 0.000000e+00 1201.0
21 TraesCS7B01G124400 chr7A 88.538 602 58 7 840 1431 183929213 183928613 0.000000e+00 719.0
22 TraesCS7B01G124400 chr7A 81.364 880 144 16 1335 2211 183951206 183950344 0.000000e+00 699.0
23 TraesCS7B01G124400 chr7A 90.309 485 32 11 4406 4881 183905882 183905404 5.370000e-174 621.0
24 TraesCS7B01G124400 chr7A 92.357 314 19 3 4098 4410 183911361 183911052 4.480000e-120 442.0
25 TraesCS7B01G124400 chr6A 82.416 836 133 14 2459 3287 592500753 592499925 0.000000e+00 717.0
26 TraesCS7B01G124400 chr6A 80.612 392 62 10 3393 3771 592580016 592580406 1.720000e-74 291.0
27 TraesCS7B01G124400 chr6A 77.468 395 70 11 1355 1738 592548398 592548784 8.230000e-53 219.0
28 TraesCS7B01G124400 chr6B 92.229 489 16 8 1 467 685015823 685016311 0.000000e+00 673.0
29 TraesCS7B01G124400 chr6B 94.005 367 20 2 1 366 22566312 22565947 5.520000e-154 555.0
30 TraesCS7B01G124400 chr6B 76.396 394 76 9 1355 1738 673024681 673025067 3.850000e-46 196.0
31 TraesCS7B01G124400 chr6B 82.692 208 32 4 1816 2021 673366254 673366049 1.080000e-41 182.0
32 TraesCS7B01G124400 chr6B 89.623 106 11 0 708 813 708386845 708386740 8.520000e-28 135.0
33 TraesCS7B01G124400 chr2B 92.213 488 16 4 1 467 677026504 677026018 0.000000e+00 671.0
34 TraesCS7B01G124400 chr2B 96.175 366 13 1 1 366 755951632 755951996 9.040000e-167 597.0
35 TraesCS7B01G124400 chr2B 94.488 127 4 3 342 467 13258289 13258165 4.990000e-45 193.0
36 TraesCS7B01G124400 chr2B 94.444 126 6 1 342 467 755952038 755952162 4.990000e-45 193.0
37 TraesCS7B01G124400 chr2B 87.324 71 9 0 1966 2036 106453825 106453755 1.130000e-11 82.4
38 TraesCS7B01G124400 chr2B 100.000 30 0 0 707 736 528824045 528824016 6.830000e-04 56.5
39 TraesCS7B01G124400 chr2B 100.000 28 0 0 709 736 787957656 787957629 9.000000e-03 52.8
40 TraesCS7B01G124400 chr5B 91.189 488 19 6 1 467 626342688 626342204 4.120000e-180 641.0
41 TraesCS7B01G124400 chr5B 95.095 367 16 2 1 366 697933952 697934317 1.180000e-160 577.0
42 TraesCS7B01G124400 chr5B 94.444 126 6 1 342 467 522721943 522722067 4.990000e-45 193.0
43 TraesCS7B01G124400 chr5B 94.444 126 6 1 342 467 522784857 522784981 4.990000e-45 193.0
44 TraesCS7B01G124400 chr1B 96.730 367 10 2 1 366 654103766 654103401 1.160000e-170 610.0
45 TraesCS7B01G124400 chr3B 92.663 368 22 5 1 366 793040094 793039730 4.330000e-145 525.0
46 TraesCS7B01G124400 chr3B 95.122 123 5 1 346 467 793039708 793039586 4.990000e-45 193.0
47 TraesCS7B01G124400 chr3B 91.892 37 3 0 708 744 8529975 8529939 9.000000e-03 52.8
48 TraesCS7B01G124400 chr6D 79.064 406 59 18 3393 3779 445894865 445895263 6.270000e-64 255.0
49 TraesCS7B01G124400 chr6D 78.000 400 65 13 1355 1738 445852298 445852690 3.800000e-56 230.0
50 TraesCS7B01G124400 chr6D 77.284 405 68 14 3393 3779 445840191 445840589 2.960000e-52 217.0
51 TraesCS7B01G124400 chr6D 87.805 82 10 0 2088 2169 445955975 445956056 4.020000e-16 97.1
52 TraesCS7B01G124400 chr3A 97.143 35 1 0 710 744 722559872 722559906 5.280000e-05 60.2
53 TraesCS7B01G124400 chr3A 100.000 28 0 0 709 736 12224303 12224276 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G124400 chr7B 145708078 145712958 4880 True 9014.0 9014 100.0000 1 4881 1 chr7B.!!$R3 4880
1 TraesCS7B01G124400 chr7B 145696055 145698712 2657 True 1074.5 1371 84.2415 1334 3794 2 chr7B.!!$R5 2460
2 TraesCS7B01G124400 chr7B 145738266 145740243 1977 True 750.5 1046 83.2340 1814 3806 2 chr7B.!!$R6 1992
3 TraesCS7B01G124400 chr7B 48049508 48050342 834 True 658.0 658 80.9470 2444 3287 1 chr7B.!!$R1 843
4 TraesCS7B01G124400 chr7B 586830236 586830750 514 False 492.0 492 85.4650 1 467 1 chr7B.!!$F1 466
5 TraesCS7B01G124400 chr7B 52641577 52642086 509 True 366.5 538 93.8475 1 467 2 chr7B.!!$R4 466
6 TraesCS7B01G124400 chr7D 179519608 179523635 4027 True 6532.0 6532 95.9050 840 4881 1 chr7D.!!$R2 4041
7 TraesCS7B01G124400 chr7D 179507614 179510088 2474 True 1085.5 1343 84.2025 1334 3794 2 chr7D.!!$R3 2460
8 TraesCS7B01G124400 chr7D 179534673 179537090 2417 True 1005.5 1264 81.9485 1319 3802 2 chr7D.!!$R4 2483
9 TraesCS7B01G124400 chr7A 183916673 183920896 4223 True 2144.0 2444 95.7410 1429 4097 2 chr7A.!!$R5 2668
10 TraesCS7B01G124400 chr7A 183856226 183858669 2443 True 1860.0 1860 80.7510 1333 3794 1 chr7A.!!$R1 2461
11 TraesCS7B01G124400 chr7A 183948788 183951206 2418 True 950.0 1201 81.6945 1335 3793 2 chr7A.!!$R6 2458
12 TraesCS7B01G124400 chr7A 183928613 183929213 600 True 719.0 719 88.5380 840 1431 1 chr7A.!!$R4 591
13 TraesCS7B01G124400 chr6A 592499925 592500753 828 True 717.0 717 82.4160 2459 3287 1 chr6A.!!$R1 828
14 TraesCS7B01G124400 chr2B 755951632 755952162 530 False 395.0 597 95.3095 1 467 2 chr2B.!!$F1 466
15 TraesCS7B01G124400 chr3B 793039586 793040094 508 True 359.0 525 93.8925 1 467 2 chr3B.!!$R2 466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 721 0.029167 TGTGCGTGTCAATGTTGCAG 59.971 50.0 0.0 0.0 36.03 4.41 F
583 723 0.029167 TGCGTGTCAATGTTGCAGTG 59.971 50.0 0.0 0.0 0.00 3.66 F
584 724 0.029300 GCGTGTCAATGTTGCAGTGT 59.971 50.0 0.0 0.0 31.07 3.55 F
678 818 0.036010 CACCCTCATCGACTTTGCCT 60.036 55.0 0.0 0.0 0.00 4.75 F
704 844 0.038526 CTAAGCGTTGTCGTCCACCT 60.039 55.0 0.0 0.0 39.49 4.00 F
705 845 0.038892 TAAGCGTTGTCGTCCACCTC 60.039 55.0 0.0 0.0 39.49 3.85 F
709 849 0.314302 CGTTGTCGTCCACCTCTTCT 59.686 55.0 0.0 0.0 0.00 2.85 F
828 968 0.400213 TCCGTTCATTCCCAAGCAGT 59.600 50.0 0.0 0.0 0.00 4.40 F
3586 5631 0.033642 TCGTGGCGTCCATTGTTGTA 59.966 50.0 1.9 0.0 35.28 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2938 0.331616 GGTCCAACCCTGCTTGGTAT 59.668 55.000 2.69 0.0 41.49 2.73 R
2591 4591 1.002624 GCCCAGGATTCGTGGTCAA 60.003 57.895 20.80 0.0 37.67 3.18 R
2999 5005 3.490348 CTTGAAACCCACCAGACTCATT 58.510 45.455 0.00 0.0 0.00 2.57 R
3124 5130 3.134804 GCCTGTATAGATGTGGGTTCACT 59.865 47.826 0.00 0.0 43.94 3.41 R
3293 5299 8.918202 TTATTCAAGAACAATAGGAACAGTGT 57.082 30.769 0.00 0.0 0.00 3.55 R
3336 5363 1.065854 CCTTCTCTGGCTTCGGTTGAT 60.066 52.381 0.00 0.0 0.00 2.57 R
3586 5631 5.359009 CCACTCCAGTAGCAAAATGATGATT 59.641 40.000 0.00 0.0 0.00 2.57 R
3754 5799 1.250154 TTGCAATGTAGGCCAGCACC 61.250 55.000 5.01 0.0 34.56 5.01 R
4476 6524 0.188342 ATTCAGGTTTGCACCCCAGT 59.812 50.000 3.79 0.0 45.63 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 124 1.795170 GCATTAATGGCGCATCGGGT 61.795 55.000 17.02 0.00 0.00 5.28
281 283 4.714555 CGTCGCTCGTCACGTCGT 62.715 66.667 12.65 0.00 37.31 4.34
467 607 2.614734 GGGGTTGTACCGAAGAAGAAGG 60.615 54.545 0.00 0.00 39.83 3.46
468 608 2.301009 GGGTTGTACCGAAGAAGAAGGA 59.699 50.000 0.00 0.00 39.83 3.36
469 609 3.055312 GGGTTGTACCGAAGAAGAAGGAT 60.055 47.826 0.00 0.00 39.83 3.24
470 610 4.565028 GGGTTGTACCGAAGAAGAAGGATT 60.565 45.833 0.00 0.00 39.83 3.01
471 611 4.392138 GGTTGTACCGAAGAAGAAGGATTG 59.608 45.833 0.00 0.00 0.00 2.67
472 612 3.596214 TGTACCGAAGAAGAAGGATTGC 58.404 45.455 0.00 0.00 0.00 3.56
473 613 3.260884 TGTACCGAAGAAGAAGGATTGCT 59.739 43.478 0.00 0.00 0.00 3.91
474 614 3.425162 ACCGAAGAAGAAGGATTGCTT 57.575 42.857 0.00 0.00 0.00 3.91
475 615 3.339141 ACCGAAGAAGAAGGATTGCTTC 58.661 45.455 9.70 9.70 40.54 3.86
478 618 3.339141 GAAGAAGAAGGATTGCTTCGGT 58.661 45.455 11.65 4.84 43.94 4.69
479 619 2.704572 AGAAGAAGGATTGCTTCGGTG 58.295 47.619 11.65 0.00 43.94 4.94
480 620 2.039084 AGAAGAAGGATTGCTTCGGTGT 59.961 45.455 11.65 1.29 43.94 4.16
481 621 3.260884 AGAAGAAGGATTGCTTCGGTGTA 59.739 43.478 11.65 0.00 43.94 2.90
482 622 2.973945 AGAAGGATTGCTTCGGTGTAC 58.026 47.619 11.65 0.00 36.08 2.90
483 623 2.301870 AGAAGGATTGCTTCGGTGTACA 59.698 45.455 11.65 0.00 36.08 2.90
484 624 2.386661 AGGATTGCTTCGGTGTACAG 57.613 50.000 0.00 0.00 0.00 2.74
485 625 1.899814 AGGATTGCTTCGGTGTACAGA 59.100 47.619 0.00 0.00 0.00 3.41
486 626 2.093973 AGGATTGCTTCGGTGTACAGAG 60.094 50.000 0.00 0.00 0.00 3.35
487 627 2.094182 GGATTGCTTCGGTGTACAGAGA 60.094 50.000 0.00 0.00 0.00 3.10
488 628 2.433868 TTGCTTCGGTGTACAGAGAC 57.566 50.000 0.00 0.00 0.00 3.36
489 629 0.601558 TGCTTCGGTGTACAGAGACC 59.398 55.000 0.00 0.00 35.59 3.85
504 644 2.062519 GAGACCGTTTCTCTCAACAGC 58.937 52.381 4.42 0.00 46.68 4.40
505 645 0.784778 GACCGTTTCTCTCAACAGCG 59.215 55.000 0.00 0.00 0.00 5.18
506 646 0.600255 ACCGTTTCTCTCAACAGCGG 60.600 55.000 0.00 0.00 42.86 5.52
507 647 1.291877 CCGTTTCTCTCAACAGCGGG 61.292 60.000 0.00 0.00 34.77 6.13
508 648 0.319555 CGTTTCTCTCAACAGCGGGA 60.320 55.000 0.00 0.00 0.00 5.14
509 649 1.149148 GTTTCTCTCAACAGCGGGAC 58.851 55.000 0.00 0.00 0.00 4.46
522 662 4.681978 GGGACGCTCGTGGCAACT 62.682 66.667 0.00 0.00 41.91 3.16
523 663 2.665185 GGACGCTCGTGGCAACTT 60.665 61.111 0.00 0.00 41.91 2.66
524 664 2.668280 GGACGCTCGTGGCAACTTC 61.668 63.158 0.00 0.00 41.91 3.01
525 665 2.665185 ACGCTCGTGGCAACTTCC 60.665 61.111 0.00 0.00 41.91 3.46
526 666 2.357517 CGCTCGTGGCAACTTCCT 60.358 61.111 0.00 0.00 41.91 3.36
527 667 2.383527 CGCTCGTGGCAACTTCCTC 61.384 63.158 0.00 0.00 41.91 3.71
528 668 1.301716 GCTCGTGGCAACTTCCTCA 60.302 57.895 0.00 0.00 41.35 3.86
529 669 1.294659 GCTCGTGGCAACTTCCTCAG 61.295 60.000 0.00 0.00 41.35 3.35
530 670 0.034059 CTCGTGGCAACTTCCTCAGT 59.966 55.000 0.00 0.00 37.30 3.41
531 671 0.033504 TCGTGGCAACTTCCTCAGTC 59.966 55.000 0.00 0.00 32.94 3.51
532 672 0.034059 CGTGGCAACTTCCTCAGTCT 59.966 55.000 0.00 0.00 32.94 3.24
533 673 1.541233 CGTGGCAACTTCCTCAGTCTT 60.541 52.381 0.00 0.00 32.94 3.01
534 674 2.576615 GTGGCAACTTCCTCAGTCTTT 58.423 47.619 0.00 0.00 32.94 2.52
535 675 2.952310 GTGGCAACTTCCTCAGTCTTTT 59.048 45.455 0.00 0.00 32.94 2.27
536 676 4.134563 GTGGCAACTTCCTCAGTCTTTTA 58.865 43.478 0.00 0.00 32.94 1.52
537 677 4.578928 GTGGCAACTTCCTCAGTCTTTTAA 59.421 41.667 0.00 0.00 32.94 1.52
538 678 5.067283 GTGGCAACTTCCTCAGTCTTTTAAA 59.933 40.000 0.00 0.00 32.94 1.52
539 679 5.833131 TGGCAACTTCCTCAGTCTTTTAAAT 59.167 36.000 0.00 0.00 32.94 1.40
540 680 6.016276 TGGCAACTTCCTCAGTCTTTTAAATC 60.016 38.462 0.00 0.00 32.94 2.17
541 681 6.382608 GCAACTTCCTCAGTCTTTTAAATCC 58.617 40.000 0.00 0.00 32.94 3.01
542 682 6.570571 GCAACTTCCTCAGTCTTTTAAATCCC 60.571 42.308 0.00 0.00 32.94 3.85
543 683 5.246307 ACTTCCTCAGTCTTTTAAATCCCG 58.754 41.667 0.00 0.00 0.00 5.14
544 684 4.903045 TCCTCAGTCTTTTAAATCCCGT 57.097 40.909 0.00 0.00 0.00 5.28
545 685 4.575885 TCCTCAGTCTTTTAAATCCCGTG 58.424 43.478 0.00 0.00 0.00 4.94
546 686 4.285003 TCCTCAGTCTTTTAAATCCCGTGA 59.715 41.667 0.00 0.00 0.00 4.35
547 687 5.045869 TCCTCAGTCTTTTAAATCCCGTGAT 60.046 40.000 0.00 0.00 0.00 3.06
548 688 5.294552 CCTCAGTCTTTTAAATCCCGTGATC 59.705 44.000 0.00 0.00 0.00 2.92
549 689 5.183228 TCAGTCTTTTAAATCCCGTGATCC 58.817 41.667 0.00 0.00 0.00 3.36
550 690 4.034048 CAGTCTTTTAAATCCCGTGATCCG 59.966 45.833 0.00 0.00 0.00 4.18
551 691 4.081309 AGTCTTTTAAATCCCGTGATCCGA 60.081 41.667 5.32 0.00 39.56 4.55
552 692 4.270325 GTCTTTTAAATCCCGTGATCCGAG 59.730 45.833 5.32 0.00 39.56 4.63
553 693 4.160814 TCTTTTAAATCCCGTGATCCGAGA 59.839 41.667 5.32 0.00 39.56 4.04
554 694 4.682778 TTTAAATCCCGTGATCCGAGAT 57.317 40.909 5.32 0.85 35.29 2.75
555 695 2.533266 AAATCCCGTGATCCGAGATG 57.467 50.000 5.32 0.00 33.93 2.90
556 696 1.414158 AATCCCGTGATCCGAGATGT 58.586 50.000 5.32 0.00 33.93 3.06
557 697 0.962489 ATCCCGTGATCCGAGATGTC 59.038 55.000 5.32 0.00 39.56 3.06
558 698 1.008424 CCCGTGATCCGAGATGTCG 60.008 63.158 5.06 5.06 46.39 4.35
559 699 1.725557 CCCGTGATCCGAGATGTCGT 61.726 60.000 11.66 0.00 45.30 4.34
560 700 0.942252 CCGTGATCCGAGATGTCGTA 59.058 55.000 11.66 0.00 45.30 3.43
561 701 1.069838 CCGTGATCCGAGATGTCGTAG 60.070 57.143 11.66 0.00 45.30 3.51
562 702 1.598132 CGTGATCCGAGATGTCGTAGT 59.402 52.381 11.66 0.00 45.30 2.73
563 703 2.600084 CGTGATCCGAGATGTCGTAGTG 60.600 54.545 11.66 0.00 45.30 2.74
564 704 2.355132 GTGATCCGAGATGTCGTAGTGT 59.645 50.000 11.66 0.00 45.30 3.55
565 705 2.354821 TGATCCGAGATGTCGTAGTGTG 59.645 50.000 11.66 0.00 45.30 3.82
566 706 0.450583 TCCGAGATGTCGTAGTGTGC 59.549 55.000 11.66 0.00 45.30 4.57
567 707 0.861866 CCGAGATGTCGTAGTGTGCG 60.862 60.000 11.66 0.00 45.30 5.34
568 708 0.179197 CGAGATGTCGTAGTGTGCGT 60.179 55.000 3.70 0.00 41.57 5.24
569 709 1.260206 GAGATGTCGTAGTGTGCGTG 58.740 55.000 0.00 0.00 0.00 5.34
570 710 0.596577 AGATGTCGTAGTGTGCGTGT 59.403 50.000 0.00 0.00 0.00 4.49
571 711 0.982673 GATGTCGTAGTGTGCGTGTC 59.017 55.000 0.00 0.00 0.00 3.67
572 712 0.312729 ATGTCGTAGTGTGCGTGTCA 59.687 50.000 0.00 0.00 0.00 3.58
573 713 0.100861 TGTCGTAGTGTGCGTGTCAA 59.899 50.000 0.00 0.00 0.00 3.18
574 714 1.269361 TGTCGTAGTGTGCGTGTCAAT 60.269 47.619 0.00 0.00 0.00 2.57
575 715 1.124297 GTCGTAGTGTGCGTGTCAATG 59.876 52.381 0.00 0.00 0.00 2.82
576 716 1.136690 CGTAGTGTGCGTGTCAATGT 58.863 50.000 0.00 0.00 0.00 2.71
577 717 1.525197 CGTAGTGTGCGTGTCAATGTT 59.475 47.619 0.00 0.00 0.00 2.71
578 718 2.659023 CGTAGTGTGCGTGTCAATGTTG 60.659 50.000 0.00 0.00 0.00 3.33
579 719 0.029300 AGTGTGCGTGTCAATGTTGC 59.971 50.000 0.00 0.00 0.00 4.17
580 720 0.248417 GTGTGCGTGTCAATGTTGCA 60.248 50.000 0.00 0.00 0.00 4.08
581 721 0.029167 TGTGCGTGTCAATGTTGCAG 59.971 50.000 0.00 0.00 36.03 4.41
582 722 0.029300 GTGCGTGTCAATGTTGCAGT 59.971 50.000 0.00 0.00 36.03 4.40
583 723 0.029167 TGCGTGTCAATGTTGCAGTG 59.971 50.000 0.00 0.00 0.00 3.66
584 724 0.029300 GCGTGTCAATGTTGCAGTGT 59.971 50.000 0.00 0.00 31.07 3.55
585 725 1.533756 GCGTGTCAATGTTGCAGTGTT 60.534 47.619 0.00 0.00 31.07 3.32
586 726 2.796304 CGTGTCAATGTTGCAGTGTTT 58.204 42.857 0.00 0.00 31.07 2.83
587 727 2.531103 CGTGTCAATGTTGCAGTGTTTG 59.469 45.455 0.00 0.00 31.07 2.93
632 772 3.587797 TCCAAGTATGTGGAACGAGAC 57.412 47.619 0.00 0.00 44.91 3.36
633 773 2.894765 TCCAAGTATGTGGAACGAGACA 59.105 45.455 0.00 0.00 44.91 3.41
634 774 3.056821 TCCAAGTATGTGGAACGAGACAG 60.057 47.826 0.00 0.00 44.91 3.51
635 775 3.306088 CCAAGTATGTGGAACGAGACAGT 60.306 47.826 0.00 0.00 42.39 3.55
636 776 4.307432 CAAGTATGTGGAACGAGACAGTT 58.693 43.478 0.00 0.00 42.39 3.16
637 777 3.914312 AGTATGTGGAACGAGACAGTTG 58.086 45.455 0.00 0.00 42.39 3.16
638 778 2.910688 ATGTGGAACGAGACAGTTGT 57.089 45.000 0.00 0.00 42.39 3.32
639 779 2.218953 TGTGGAACGAGACAGTTGTC 57.781 50.000 4.09 4.09 42.39 3.18
640 780 1.754803 TGTGGAACGAGACAGTTGTCT 59.245 47.619 14.27 14.27 46.89 3.41
650 790 3.514510 CAGTTGTCTGTTGTGCGTG 57.485 52.632 0.00 0.00 36.97 5.34
651 791 0.589729 CAGTTGTCTGTTGTGCGTGC 60.590 55.000 0.00 0.00 36.97 5.34
652 792 1.651132 GTTGTCTGTTGTGCGTGCG 60.651 57.895 0.00 0.00 0.00 5.34
653 793 2.818487 TTGTCTGTTGTGCGTGCGG 61.818 57.895 0.00 0.00 0.00 5.69
654 794 4.666532 GTCTGTTGTGCGTGCGGC 62.667 66.667 0.00 0.00 43.96 6.53
670 810 4.451150 GCGTGCCACCCTCATCGA 62.451 66.667 0.00 0.00 0.00 3.59
671 811 2.509336 CGTGCCACCCTCATCGAC 60.509 66.667 0.00 0.00 0.00 4.20
672 812 2.982130 GTGCCACCCTCATCGACT 59.018 61.111 0.00 0.00 0.00 4.18
673 813 1.296715 GTGCCACCCTCATCGACTT 59.703 57.895 0.00 0.00 0.00 3.01
674 814 0.321653 GTGCCACCCTCATCGACTTT 60.322 55.000 0.00 0.00 0.00 2.66
675 815 0.321564 TGCCACCCTCATCGACTTTG 60.322 55.000 0.00 0.00 0.00 2.77
676 816 1.648467 GCCACCCTCATCGACTTTGC 61.648 60.000 0.00 0.00 0.00 3.68
677 817 1.026718 CCACCCTCATCGACTTTGCC 61.027 60.000 0.00 0.00 0.00 4.52
678 818 0.036010 CACCCTCATCGACTTTGCCT 60.036 55.000 0.00 0.00 0.00 4.75
679 819 0.250513 ACCCTCATCGACTTTGCCTC 59.749 55.000 0.00 0.00 0.00 4.70
680 820 0.539051 CCCTCATCGACTTTGCCTCT 59.461 55.000 0.00 0.00 0.00 3.69
681 821 1.649664 CCTCATCGACTTTGCCTCTG 58.350 55.000 0.00 0.00 0.00 3.35
682 822 1.005340 CTCATCGACTTTGCCTCTGC 58.995 55.000 0.00 0.00 38.26 4.26
683 823 0.391661 TCATCGACTTTGCCTCTGCC 60.392 55.000 0.00 0.00 36.33 4.85
684 824 0.392193 CATCGACTTTGCCTCTGCCT 60.392 55.000 0.00 0.00 36.33 4.75
685 825 0.107945 ATCGACTTTGCCTCTGCCTC 60.108 55.000 0.00 0.00 36.33 4.70
686 826 1.188219 TCGACTTTGCCTCTGCCTCT 61.188 55.000 0.00 0.00 36.33 3.69
687 827 0.532573 CGACTTTGCCTCTGCCTCTA 59.467 55.000 0.00 0.00 36.33 2.43
688 828 1.066858 CGACTTTGCCTCTGCCTCTAA 60.067 52.381 0.00 0.00 36.33 2.10
689 829 2.626840 GACTTTGCCTCTGCCTCTAAG 58.373 52.381 0.00 0.00 36.33 2.18
690 830 1.339535 ACTTTGCCTCTGCCTCTAAGC 60.340 52.381 0.00 0.00 36.33 3.09
691 831 0.391661 TTTGCCTCTGCCTCTAAGCG 60.392 55.000 0.00 0.00 36.33 4.68
692 832 1.544825 TTGCCTCTGCCTCTAAGCGT 61.545 55.000 0.00 0.00 36.33 5.07
693 833 1.219393 GCCTCTGCCTCTAAGCGTT 59.781 57.895 0.00 0.00 34.65 4.84
694 834 1.086634 GCCTCTGCCTCTAAGCGTTG 61.087 60.000 0.00 0.00 34.65 4.10
695 835 0.247736 CCTCTGCCTCTAAGCGTTGT 59.752 55.000 0.00 0.00 34.65 3.32
696 836 1.634702 CTCTGCCTCTAAGCGTTGTC 58.365 55.000 0.00 0.00 34.65 3.18
697 837 0.109272 TCTGCCTCTAAGCGTTGTCG 60.109 55.000 0.00 0.00 40.37 4.35
698 838 0.388649 CTGCCTCTAAGCGTTGTCGT 60.389 55.000 0.00 0.00 39.49 4.34
699 839 0.388134 TGCCTCTAAGCGTTGTCGTC 60.388 55.000 0.00 0.00 39.49 4.20
700 840 1.077089 GCCTCTAAGCGTTGTCGTCC 61.077 60.000 0.00 0.00 39.49 4.79
701 841 0.242825 CCTCTAAGCGTTGTCGTCCA 59.757 55.000 0.00 0.00 39.49 4.02
702 842 1.337821 CTCTAAGCGTTGTCGTCCAC 58.662 55.000 0.00 0.00 39.49 4.02
703 843 0.038892 TCTAAGCGTTGTCGTCCACC 60.039 55.000 0.00 0.00 39.49 4.61
704 844 0.038526 CTAAGCGTTGTCGTCCACCT 60.039 55.000 0.00 0.00 39.49 4.00
705 845 0.038892 TAAGCGTTGTCGTCCACCTC 60.039 55.000 0.00 0.00 39.49 3.85
706 846 1.745320 AAGCGTTGTCGTCCACCTCT 61.745 55.000 0.00 0.00 39.49 3.69
707 847 1.300697 GCGTTGTCGTCCACCTCTT 60.301 57.895 0.00 0.00 39.49 2.85
708 848 1.282930 GCGTTGTCGTCCACCTCTTC 61.283 60.000 0.00 0.00 39.49 2.87
709 849 0.314302 CGTTGTCGTCCACCTCTTCT 59.686 55.000 0.00 0.00 0.00 2.85
710 850 1.538512 CGTTGTCGTCCACCTCTTCTA 59.461 52.381 0.00 0.00 0.00 2.10
711 851 2.667724 CGTTGTCGTCCACCTCTTCTAC 60.668 54.545 0.00 0.00 0.00 2.59
712 852 2.557490 GTTGTCGTCCACCTCTTCTACT 59.443 50.000 0.00 0.00 0.00 2.57
713 853 2.434428 TGTCGTCCACCTCTTCTACTC 58.566 52.381 0.00 0.00 0.00 2.59
714 854 1.744522 GTCGTCCACCTCTTCTACTCC 59.255 57.143 0.00 0.00 0.00 3.85
715 855 1.104630 CGTCCACCTCTTCTACTCCC 58.895 60.000 0.00 0.00 0.00 4.30
716 856 1.341187 CGTCCACCTCTTCTACTCCCT 60.341 57.143 0.00 0.00 0.00 4.20
717 857 2.380941 GTCCACCTCTTCTACTCCCTC 58.619 57.143 0.00 0.00 0.00 4.30
718 858 1.288335 TCCACCTCTTCTACTCCCTCC 59.712 57.143 0.00 0.00 0.00 4.30
719 859 1.394618 CACCTCTTCTACTCCCTCCG 58.605 60.000 0.00 0.00 0.00 4.63
720 860 1.001282 ACCTCTTCTACTCCCTCCGT 58.999 55.000 0.00 0.00 0.00 4.69
721 861 1.358445 ACCTCTTCTACTCCCTCCGTT 59.642 52.381 0.00 0.00 0.00 4.44
722 862 2.025898 CCTCTTCTACTCCCTCCGTTC 58.974 57.143 0.00 0.00 0.00 3.95
723 863 1.671845 CTCTTCTACTCCCTCCGTTCG 59.328 57.143 0.00 0.00 0.00 3.95
724 864 1.280133 TCTTCTACTCCCTCCGTTCGA 59.720 52.381 0.00 0.00 0.00 3.71
725 865 2.089980 CTTCTACTCCCTCCGTTCGAA 58.910 52.381 0.00 0.00 0.00 3.71
726 866 2.205022 TCTACTCCCTCCGTTCGAAA 57.795 50.000 0.00 0.00 0.00 3.46
727 867 2.731572 TCTACTCCCTCCGTTCGAAAT 58.268 47.619 0.00 0.00 0.00 2.17
728 868 3.094572 TCTACTCCCTCCGTTCGAAATT 58.905 45.455 0.00 0.00 0.00 1.82
729 869 4.272489 TCTACTCCCTCCGTTCGAAATTA 58.728 43.478 0.00 0.00 0.00 1.40
730 870 3.521947 ACTCCCTCCGTTCGAAATTAG 57.478 47.619 0.00 0.00 0.00 1.73
731 871 2.830321 ACTCCCTCCGTTCGAAATTAGT 59.170 45.455 0.00 0.00 0.00 2.24
732 872 3.260128 ACTCCCTCCGTTCGAAATTAGTT 59.740 43.478 0.00 0.00 0.00 2.24
733 873 3.592059 TCCCTCCGTTCGAAATTAGTTG 58.408 45.455 0.00 0.00 0.00 3.16
734 874 3.007182 TCCCTCCGTTCGAAATTAGTTGT 59.993 43.478 0.00 0.00 0.00 3.32
735 875 3.370061 CCCTCCGTTCGAAATTAGTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
736 876 3.991773 CCTCCGTTCGAAATTAGTTGTCA 59.008 43.478 0.00 0.00 0.00 3.58
737 877 4.143179 CCTCCGTTCGAAATTAGTTGTCAC 60.143 45.833 0.00 0.00 0.00 3.67
738 878 4.370049 TCCGTTCGAAATTAGTTGTCACA 58.630 39.130 0.00 0.00 0.00 3.58
739 879 4.809958 TCCGTTCGAAATTAGTTGTCACAA 59.190 37.500 0.00 0.00 0.00 3.33
740 880 5.293814 TCCGTTCGAAATTAGTTGTCACAAA 59.706 36.000 0.00 0.00 0.00 2.83
741 881 5.966503 CCGTTCGAAATTAGTTGTCACAAAA 59.033 36.000 0.00 0.00 0.00 2.44
742 882 6.469595 CCGTTCGAAATTAGTTGTCACAAAAA 59.530 34.615 0.00 0.00 0.00 1.94
743 883 7.166804 CCGTTCGAAATTAGTTGTCACAAAAAT 59.833 33.333 0.00 0.00 0.00 1.82
744 884 9.160576 CGTTCGAAATTAGTTGTCACAAAAATA 57.839 29.630 0.00 0.00 0.00 1.40
811 951 9.673454 ACATTCAATTTTTAAACGAGTAGTTCC 57.327 29.630 0.00 0.00 43.37 3.62
812 952 8.837059 CATTCAATTTTTAAACGAGTAGTTCCG 58.163 33.333 0.00 0.00 43.37 4.30
813 953 7.481275 TCAATTTTTAAACGAGTAGTTCCGT 57.519 32.000 0.00 0.00 43.37 4.69
815 955 8.063630 TCAATTTTTAAACGAGTAGTTCCGTTC 58.936 33.333 0.00 0.00 46.61 3.95
816 956 6.900568 TTTTTAAACGAGTAGTTCCGTTCA 57.099 33.333 0.00 0.00 46.61 3.18
817 957 7.481275 TTTTTAAACGAGTAGTTCCGTTCAT 57.519 32.000 0.00 0.00 46.61 2.57
818 958 7.481275 TTTTAAACGAGTAGTTCCGTTCATT 57.519 32.000 0.00 0.00 46.61 2.57
819 959 6.695292 TTAAACGAGTAGTTCCGTTCATTC 57.305 37.500 0.00 0.00 46.61 2.67
820 960 3.227810 ACGAGTAGTTCCGTTCATTCC 57.772 47.619 0.00 0.00 35.21 3.01
821 961 2.094338 ACGAGTAGTTCCGTTCATTCCC 60.094 50.000 0.00 0.00 35.21 3.97
822 962 2.094390 CGAGTAGTTCCGTTCATTCCCA 60.094 50.000 0.00 0.00 0.00 4.37
823 963 3.615592 CGAGTAGTTCCGTTCATTCCCAA 60.616 47.826 0.00 0.00 0.00 4.12
824 964 3.933332 GAGTAGTTCCGTTCATTCCCAAG 59.067 47.826 0.00 0.00 0.00 3.61
825 965 1.534729 AGTTCCGTTCATTCCCAAGC 58.465 50.000 0.00 0.00 0.00 4.01
826 966 1.202879 AGTTCCGTTCATTCCCAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
827 967 1.200020 GTTCCGTTCATTCCCAAGCAG 59.800 52.381 0.00 0.00 0.00 4.24
828 968 0.400213 TCCGTTCATTCCCAAGCAGT 59.600 50.000 0.00 0.00 0.00 4.40
829 969 1.202879 TCCGTTCATTCCCAAGCAGTT 60.203 47.619 0.00 0.00 0.00 3.16
830 970 1.613437 CCGTTCATTCCCAAGCAGTTT 59.387 47.619 0.00 0.00 0.00 2.66
831 971 2.351738 CCGTTCATTCCCAAGCAGTTTC 60.352 50.000 0.00 0.00 0.00 2.78
832 972 2.554032 CGTTCATTCCCAAGCAGTTTCT 59.446 45.455 0.00 0.00 0.00 2.52
833 973 3.004734 CGTTCATTCCCAAGCAGTTTCTT 59.995 43.478 0.00 0.00 0.00 2.52
834 974 4.550422 GTTCATTCCCAAGCAGTTTCTTC 58.450 43.478 0.00 0.00 0.00 2.87
835 975 4.104383 TCATTCCCAAGCAGTTTCTTCT 57.896 40.909 0.00 0.00 0.00 2.85
836 976 4.074970 TCATTCCCAAGCAGTTTCTTCTC 58.925 43.478 0.00 0.00 0.00 2.87
837 977 2.568623 TCCCAAGCAGTTTCTTCTCC 57.431 50.000 0.00 0.00 0.00 3.71
838 978 1.774254 TCCCAAGCAGTTTCTTCTCCA 59.226 47.619 0.00 0.00 0.00 3.86
839 979 2.376518 TCCCAAGCAGTTTCTTCTCCAT 59.623 45.455 0.00 0.00 0.00 3.41
840 980 2.751806 CCCAAGCAGTTTCTTCTCCATC 59.248 50.000 0.00 0.00 0.00 3.51
841 981 2.751806 CCAAGCAGTTTCTTCTCCATCC 59.248 50.000 0.00 0.00 0.00 3.51
842 982 2.751806 CAAGCAGTTTCTTCTCCATCCC 59.248 50.000 0.00 0.00 0.00 3.85
843 983 1.283321 AGCAGTTTCTTCTCCATCCCC 59.717 52.381 0.00 0.00 0.00 4.81
844 984 1.683319 GCAGTTTCTTCTCCATCCCCC 60.683 57.143 0.00 0.00 0.00 5.40
867 1007 1.711206 GTCCTCTGTTTCGGCTACAC 58.289 55.000 0.00 0.00 0.00 2.90
902 1042 2.270923 CGCTTGATGAACTTCGATGGA 58.729 47.619 3.12 0.00 0.00 3.41
920 1060 3.467374 GGAATTCTCCAGCGAGATTCT 57.533 47.619 5.23 0.00 44.68 2.40
965 1105 3.084039 GTCATGATTGAGACCTTTGGCA 58.916 45.455 0.00 0.00 30.85 4.92
994 1134 7.500227 TCAGCATAAATTAGAAGGTCAATCTGG 59.500 37.037 0.00 0.00 0.00 3.86
997 1137 4.487714 AATTAGAAGGTCAATCTGGCGA 57.512 40.909 0.00 0.00 0.00 5.54
1041 1181 8.427774 GGCATTTTCTCTTTTCAAATTTACGAG 58.572 33.333 0.00 0.00 0.00 4.18
1042 1182 7.946768 GCATTTTCTCTTTTCAAATTTACGAGC 59.053 33.333 0.00 0.00 0.00 5.03
1169 1317 3.821033 ACCTTGAGACACCATTTTGCTAC 59.179 43.478 0.00 0.00 0.00 3.58
1179 1327 2.539476 CATTTTGCTACGGAAATGGCC 58.461 47.619 0.00 0.00 38.79 5.36
1219 1367 0.935898 CAGCCAAGATGAGATCGTGC 59.064 55.000 0.00 0.00 37.43 5.34
1243 1394 2.365105 TCCCCACGGTGGATCCTC 60.365 66.667 28.36 9.56 40.96 3.71
1256 1407 3.396822 ATCCTCCTCCGGGTCCTGG 62.397 68.421 10.99 10.99 0.00 4.45
1262 1413 2.365105 TCCGGGTCCTGGGATCAC 60.365 66.667 17.33 0.00 0.00 3.06
1348 1502 4.147449 CCGAGCTCATGCGGGACA 62.147 66.667 15.40 0.00 43.67 4.02
1749 1909 1.891150 GTCCTCTACCTTGTCGGTCAA 59.109 52.381 0.00 0.00 44.93 3.18
2314 2512 1.507141 CGTGTCAGGGAGGTTGCAAC 61.507 60.000 21.59 21.59 0.00 4.17
2316 2514 1.070786 GTCAGGGAGGTTGCAACGA 59.929 57.895 22.67 10.68 0.00 3.85
2317 2515 0.951040 GTCAGGGAGGTTGCAACGAG 60.951 60.000 22.67 8.94 0.00 4.18
2446 2692 2.810852 CCTCTGTTTCTCTGCAACTTCC 59.189 50.000 0.00 0.00 0.00 3.46
2512 2938 3.057548 CTTGCAGCGGCCATCACA 61.058 61.111 6.32 0.00 40.13 3.58
2560 2986 1.816863 GAGTCTGGCAGGACAACGGA 61.817 60.000 15.73 0.00 38.57 4.69
2999 5005 1.002624 GGTTTCCGGCTCCATGACA 60.003 57.895 0.00 0.00 0.00 3.58
3124 5130 3.244665 CCATTGCCCTCATCATACTGCTA 60.245 47.826 0.00 0.00 0.00 3.49
3293 5299 4.529897 TGTGGTCCTCTTCGTTATAGCTA 58.470 43.478 0.00 0.00 0.00 3.32
3336 5363 5.592282 TGAATAAGAACAGAAACACCAGCAA 59.408 36.000 0.00 0.00 0.00 3.91
3586 5631 0.033642 TCGTGGCGTCCATTGTTGTA 59.966 50.000 1.90 0.00 35.28 2.41
3754 5799 0.443478 TCGTTGCACTGATCATTGCG 59.557 50.000 26.86 16.24 39.50 4.85
3809 5854 3.947196 GGCATTCCTGTGTTCACATCATA 59.053 43.478 6.09 0.00 0.00 2.15
4048 6096 4.099881 TGCCCCAATTTGATCTATTGCTTC 59.900 41.667 12.78 6.66 32.82 3.86
4057 6105 9.472361 AATTTGATCTATTGCTTCACATTATGC 57.528 29.630 0.00 0.00 0.00 3.14
4078 6126 4.719773 TGCAAGATATAGTACAACAGGGGT 59.280 41.667 0.00 0.00 0.00 4.95
4119 6167 5.808366 TTTGGGGAGTGTCTATATAGCAG 57.192 43.478 4.75 0.00 0.00 4.24
4124 6172 5.540719 GGGGAGTGTCTATATAGCAGTCTTT 59.459 44.000 25.04 5.41 33.87 2.52
4125 6173 6.294843 GGGGAGTGTCTATATAGCAGTCTTTC 60.295 46.154 25.04 18.92 33.87 2.62
4212 6260 3.567473 GCTCGGGCTCAACAGAAC 58.433 61.111 0.00 0.00 35.22 3.01
4257 6305 6.048509 TCTTTTTGCAAGAAAATTCTGGTCC 58.951 36.000 3.79 0.00 37.65 4.46
4266 6314 5.316987 AGAAAATTCTGGTCCTTGTCGAAT 58.683 37.500 0.00 0.00 35.89 3.34
4267 6315 5.770162 AGAAAATTCTGGTCCTTGTCGAATT 59.230 36.000 0.00 0.00 35.89 2.17
4272 6320 3.146066 CTGGTCCTTGTCGAATTGGAAA 58.854 45.455 3.54 0.00 0.00 3.13
4274 6322 3.756434 TGGTCCTTGTCGAATTGGAAATC 59.244 43.478 3.54 0.00 0.00 2.17
4276 6324 4.142600 GGTCCTTGTCGAATTGGAAATCAG 60.143 45.833 3.54 0.00 0.00 2.90
4278 6326 4.695455 TCCTTGTCGAATTGGAAATCAGTC 59.305 41.667 0.00 0.00 0.00 3.51
4279 6327 4.436050 CCTTGTCGAATTGGAAATCAGTCG 60.436 45.833 0.00 0.00 36.60 4.18
4280 6328 3.000041 TGTCGAATTGGAAATCAGTCGG 59.000 45.455 0.00 0.00 36.22 4.79
4281 6329 2.006888 TCGAATTGGAAATCAGTCGGC 58.993 47.619 0.00 0.00 36.22 5.54
4282 6330 1.267532 CGAATTGGAAATCAGTCGGCG 60.268 52.381 0.00 0.00 33.69 6.46
4283 6331 0.451783 AATTGGAAATCAGTCGGCGC 59.548 50.000 0.00 0.00 0.00 6.53
4284 6332 0.392998 ATTGGAAATCAGTCGGCGCT 60.393 50.000 7.64 0.00 0.00 5.92
4285 6333 0.248012 TTGGAAATCAGTCGGCGCTA 59.752 50.000 7.64 0.00 0.00 4.26
4286 6334 0.248012 TGGAAATCAGTCGGCGCTAA 59.752 50.000 7.64 0.00 0.00 3.09
4287 6335 1.338294 TGGAAATCAGTCGGCGCTAAA 60.338 47.619 7.64 0.00 0.00 1.85
4288 6336 1.940613 GGAAATCAGTCGGCGCTAAAT 59.059 47.619 7.64 0.00 0.00 1.40
4289 6337 3.128349 GGAAATCAGTCGGCGCTAAATA 58.872 45.455 7.64 0.00 0.00 1.40
4290 6338 3.184581 GGAAATCAGTCGGCGCTAAATAG 59.815 47.826 7.64 0.00 0.00 1.73
4291 6339 3.728076 AATCAGTCGGCGCTAAATAGA 57.272 42.857 7.64 0.00 0.00 1.98
4292 6340 3.728076 ATCAGTCGGCGCTAAATAGAA 57.272 42.857 7.64 0.00 0.00 2.10
4293 6341 3.513680 TCAGTCGGCGCTAAATAGAAA 57.486 42.857 7.64 0.00 0.00 2.52
4333 6381 4.716784 ACCTGTTCTTAGATATCTGGTGCA 59.283 41.667 15.79 6.99 0.00 4.57
4390 6438 5.815740 CCGGTACATCTGCAGTTTACTTTAT 59.184 40.000 14.67 0.00 0.00 1.40
4437 6485 6.806751 TCACTAATGCTAGTATGTTGGAGTC 58.193 40.000 0.00 0.00 36.14 3.36
4473 6521 5.975939 GCAACTCTTTTGCCTCATGAATATC 59.024 40.000 0.00 0.00 39.38 1.63
4475 6523 4.818546 ACTCTTTTGCCTCATGAATATCCG 59.181 41.667 0.00 0.00 0.00 4.18
4476 6524 5.034852 TCTTTTGCCTCATGAATATCCGA 57.965 39.130 0.00 0.00 0.00 4.55
4477 6525 4.816385 TCTTTTGCCTCATGAATATCCGAC 59.184 41.667 0.00 0.00 0.00 4.79
4478 6526 4.422073 TTTGCCTCATGAATATCCGACT 57.578 40.909 0.00 0.00 0.00 4.18
4479 6527 3.391506 TGCCTCATGAATATCCGACTG 57.608 47.619 0.00 0.00 0.00 3.51
4487 6536 0.916086 AATATCCGACTGGGGTGCAA 59.084 50.000 0.00 0.00 36.01 4.08
4502 6551 2.229792 GTGCAAACCTGAATCCAGTGA 58.770 47.619 0.00 0.00 38.74 3.41
4573 6622 1.280998 AGGATTGGAGTAAACACCGGG 59.719 52.381 6.32 0.00 0.00 5.73
4575 6624 0.696501 ATTGGAGTAAACACCGGGCT 59.303 50.000 6.32 0.00 0.00 5.19
4664 6713 9.598517 CCACTAAAAATATACCACATGCAAAAT 57.401 29.630 0.00 0.00 0.00 1.82
4684 6733 8.881743 GCAAAATCAAACAATATGGCTCAATTA 58.118 29.630 0.00 0.00 0.00 1.40
4815 6864 6.090763 CCTTTTCTGTCAAAAGAAAACACACC 59.909 38.462 7.78 0.00 46.26 4.16
4816 6865 5.713792 TTCTGTCAAAAGAAAACACACCA 57.286 34.783 0.00 0.00 33.25 4.17
4818 6867 4.764823 TCTGTCAAAAGAAAACACACCACT 59.235 37.500 0.00 0.00 0.00 4.00
4819 6868 5.242838 TCTGTCAAAAGAAAACACACCACTT 59.757 36.000 0.00 0.00 0.00 3.16
4820 6869 5.226396 TGTCAAAAGAAAACACACCACTTG 58.774 37.500 0.00 0.00 0.00 3.16
4830 6880 4.008074 ACACACCACTTGGAGACATAAG 57.992 45.455 1.14 0.00 42.32 1.73
4863 6916 7.573968 AATGATGTACCTCAAAGAAATAGGC 57.426 36.000 4.88 0.00 33.42 3.93
4871 6924 4.637977 CCTCAAAGAAATAGGCCAGAAGTC 59.362 45.833 5.01 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 184 4.240600 ACGACGCGACGTGTGTGA 62.241 61.111 33.29 0.00 44.84 3.58
293 308 1.959042 ACGTACGACGATGACCCTAT 58.041 50.000 24.41 0.00 46.05 2.57
429 568 2.024751 ACCCCCTAAACACAACAACAGT 60.025 45.455 0.00 0.00 0.00 3.55
431 570 2.761208 CAACCCCCTAAACACAACAACA 59.239 45.455 0.00 0.00 0.00 3.33
467 607 2.924290 GTCTCTGTACACCGAAGCAATC 59.076 50.000 0.00 0.00 0.00 2.67
468 608 2.353803 GGTCTCTGTACACCGAAGCAAT 60.354 50.000 0.00 0.00 0.00 3.56
469 609 1.000506 GGTCTCTGTACACCGAAGCAA 59.999 52.381 0.00 0.00 0.00 3.91
470 610 0.601558 GGTCTCTGTACACCGAAGCA 59.398 55.000 0.00 0.00 0.00 3.91
471 611 3.420397 GGTCTCTGTACACCGAAGC 57.580 57.895 0.00 0.00 0.00 3.86
485 625 1.603172 CGCTGTTGAGAGAAACGGTCT 60.603 52.381 0.00 0.00 38.46 3.85
486 626 0.784778 CGCTGTTGAGAGAAACGGTC 59.215 55.000 0.00 0.00 38.46 4.79
487 627 0.600255 CCGCTGTTGAGAGAAACGGT 60.600 55.000 0.00 0.00 38.46 4.83
488 628 1.291877 CCCGCTGTTGAGAGAAACGG 61.292 60.000 0.00 0.00 39.09 4.44
489 629 0.319555 TCCCGCTGTTGAGAGAAACG 60.320 55.000 0.00 0.00 32.47 3.60
490 630 1.149148 GTCCCGCTGTTGAGAGAAAC 58.851 55.000 0.00 0.00 0.00 2.78
491 631 0.319555 CGTCCCGCTGTTGAGAGAAA 60.320 55.000 0.00 0.00 0.00 2.52
492 632 1.289066 CGTCCCGCTGTTGAGAGAA 59.711 57.895 0.00 0.00 0.00 2.87
493 633 2.962569 CGTCCCGCTGTTGAGAGA 59.037 61.111 0.00 0.00 0.00 3.10
510 650 1.294659 CTGAGGAAGTTGCCACGAGC 61.295 60.000 0.00 0.00 44.14 5.03
511 651 0.034059 ACTGAGGAAGTTGCCACGAG 59.966 55.000 0.00 0.00 34.57 4.18
512 652 0.033504 GACTGAGGAAGTTGCCACGA 59.966 55.000 0.00 0.00 40.07 4.35
513 653 0.034059 AGACTGAGGAAGTTGCCACG 59.966 55.000 0.00 0.00 40.07 4.94
514 654 2.262423 AAGACTGAGGAAGTTGCCAC 57.738 50.000 0.00 0.00 40.07 5.01
515 655 3.297134 AAAAGACTGAGGAAGTTGCCA 57.703 42.857 0.00 0.00 40.07 4.92
516 656 5.767816 TTTAAAAGACTGAGGAAGTTGCC 57.232 39.130 0.00 0.00 40.07 4.52
517 657 6.382608 GGATTTAAAAGACTGAGGAAGTTGC 58.617 40.000 0.00 0.00 40.07 4.17
518 658 6.348540 CGGGATTTAAAAGACTGAGGAAGTTG 60.349 42.308 0.00 0.00 40.07 3.16
519 659 5.705905 CGGGATTTAAAAGACTGAGGAAGTT 59.294 40.000 0.00 0.00 40.07 2.66
520 660 5.221864 ACGGGATTTAAAAGACTGAGGAAGT 60.222 40.000 0.00 0.00 43.85 3.01
521 661 5.122396 CACGGGATTTAAAAGACTGAGGAAG 59.878 44.000 0.00 0.00 0.00 3.46
522 662 5.001232 CACGGGATTTAAAAGACTGAGGAA 58.999 41.667 0.00 0.00 0.00 3.36
523 663 4.285003 TCACGGGATTTAAAAGACTGAGGA 59.715 41.667 0.00 0.00 0.00 3.71
524 664 4.575885 TCACGGGATTTAAAAGACTGAGG 58.424 43.478 0.00 0.00 0.00 3.86
525 665 5.294552 GGATCACGGGATTTAAAAGACTGAG 59.705 44.000 0.00 0.00 32.67 3.35
526 666 5.183228 GGATCACGGGATTTAAAAGACTGA 58.817 41.667 0.00 0.00 32.67 3.41
527 667 4.034048 CGGATCACGGGATTTAAAAGACTG 59.966 45.833 0.00 0.00 39.42 3.51
528 668 4.081309 TCGGATCACGGGATTTAAAAGACT 60.081 41.667 0.00 0.00 44.45 3.24
529 669 4.186159 TCGGATCACGGGATTTAAAAGAC 58.814 43.478 0.00 0.00 44.45 3.01
530 670 4.475051 TCGGATCACGGGATTTAAAAGA 57.525 40.909 0.00 0.00 44.45 2.52
541 681 0.942252 TACGACATCTCGGATCACGG 59.058 55.000 0.00 0.00 44.80 4.94
542 682 1.598132 ACTACGACATCTCGGATCACG 59.402 52.381 0.00 0.00 44.80 4.35
543 683 2.355132 ACACTACGACATCTCGGATCAC 59.645 50.000 0.00 0.00 44.80 3.06
544 684 2.354821 CACACTACGACATCTCGGATCA 59.645 50.000 0.00 0.00 44.80 2.92
545 685 2.855187 GCACACTACGACATCTCGGATC 60.855 54.545 0.00 0.00 44.80 3.36
546 686 1.065701 GCACACTACGACATCTCGGAT 59.934 52.381 0.00 0.00 44.80 4.18
547 687 0.450583 GCACACTACGACATCTCGGA 59.549 55.000 0.00 0.00 44.80 4.55
548 688 0.861866 CGCACACTACGACATCTCGG 60.862 60.000 0.00 0.00 44.80 4.63
549 689 0.179197 ACGCACACTACGACATCTCG 60.179 55.000 0.00 0.00 46.06 4.04
550 690 1.260206 CACGCACACTACGACATCTC 58.740 55.000 0.00 0.00 0.00 2.75
551 691 0.596577 ACACGCACACTACGACATCT 59.403 50.000 0.00 0.00 0.00 2.90
552 692 0.982673 GACACGCACACTACGACATC 59.017 55.000 0.00 0.00 0.00 3.06
553 693 0.312729 TGACACGCACACTACGACAT 59.687 50.000 0.00 0.00 0.00 3.06
554 694 0.100861 TTGACACGCACACTACGACA 59.899 50.000 0.00 0.00 0.00 4.35
555 695 1.124297 CATTGACACGCACACTACGAC 59.876 52.381 0.00 0.00 0.00 4.34
556 696 1.269361 ACATTGACACGCACACTACGA 60.269 47.619 0.00 0.00 0.00 3.43
557 697 1.136690 ACATTGACACGCACACTACG 58.863 50.000 0.00 0.00 0.00 3.51
558 698 2.903678 CAACATTGACACGCACACTAC 58.096 47.619 0.00 0.00 0.00 2.73
559 699 1.262950 GCAACATTGACACGCACACTA 59.737 47.619 0.00 0.00 0.00 2.74
560 700 0.029300 GCAACATTGACACGCACACT 59.971 50.000 0.00 0.00 0.00 3.55
561 701 0.248417 TGCAACATTGACACGCACAC 60.248 50.000 0.00 0.00 0.00 3.82
562 702 0.029167 CTGCAACATTGACACGCACA 59.971 50.000 0.00 0.00 0.00 4.57
563 703 0.029300 ACTGCAACATTGACACGCAC 59.971 50.000 0.00 0.00 0.00 5.34
564 704 0.029167 CACTGCAACATTGACACGCA 59.971 50.000 0.00 0.00 0.00 5.24
565 705 0.029300 ACACTGCAACATTGACACGC 59.971 50.000 0.00 0.00 0.00 5.34
566 706 2.473530 AACACTGCAACATTGACACG 57.526 45.000 0.00 0.00 0.00 4.49
597 737 9.693739 CACATACTTGGATCTACTCCTATATCT 57.306 37.037 0.00 0.00 45.21 1.98
598 738 8.908903 CCACATACTTGGATCTACTCCTATATC 58.091 40.741 0.00 0.00 45.21 1.63
599 739 8.624670 TCCACATACTTGGATCTACTCCTATAT 58.375 37.037 0.00 0.00 45.21 0.86
600 740 7.996788 TCCACATACTTGGATCTACTCCTATA 58.003 38.462 0.00 0.00 45.21 1.31
601 741 6.864421 TCCACATACTTGGATCTACTCCTAT 58.136 40.000 0.00 0.00 45.21 2.57
602 742 6.275692 TCCACATACTTGGATCTACTCCTA 57.724 41.667 0.00 0.00 45.21 2.94
603 743 5.144159 TCCACATACTTGGATCTACTCCT 57.856 43.478 0.00 0.00 45.21 3.69
604 744 5.602628 GTTCCACATACTTGGATCTACTCC 58.397 45.833 0.00 0.00 45.42 3.85
605 745 5.067413 TCGTTCCACATACTTGGATCTACTC 59.933 44.000 0.00 0.00 45.42 2.59
606 746 4.954202 TCGTTCCACATACTTGGATCTACT 59.046 41.667 0.00 0.00 45.42 2.57
607 747 5.067413 TCTCGTTCCACATACTTGGATCTAC 59.933 44.000 0.00 0.00 45.42 2.59
608 748 5.067413 GTCTCGTTCCACATACTTGGATCTA 59.933 44.000 0.00 0.00 45.42 1.98
609 749 4.023980 TCTCGTTCCACATACTTGGATCT 58.976 43.478 0.00 0.00 45.42 2.75
610 750 4.113354 GTCTCGTTCCACATACTTGGATC 58.887 47.826 0.00 0.00 45.42 3.36
611 751 3.513912 TGTCTCGTTCCACATACTTGGAT 59.486 43.478 0.00 0.00 45.42 3.41
612 752 2.894765 TGTCTCGTTCCACATACTTGGA 59.105 45.455 0.00 0.00 44.39 3.53
613 753 3.254060 CTGTCTCGTTCCACATACTTGG 58.746 50.000 0.00 0.00 38.10 3.61
614 754 3.914312 ACTGTCTCGTTCCACATACTTG 58.086 45.455 0.00 0.00 0.00 3.16
615 755 4.202223 ACAACTGTCTCGTTCCACATACTT 60.202 41.667 0.00 0.00 0.00 2.24
616 756 3.321111 ACAACTGTCTCGTTCCACATACT 59.679 43.478 0.00 0.00 0.00 2.12
617 757 3.650139 ACAACTGTCTCGTTCCACATAC 58.350 45.455 0.00 0.00 0.00 2.39
618 758 3.909430 GACAACTGTCTCGTTCCACATA 58.091 45.455 2.51 0.00 41.65 2.29
619 759 2.755650 GACAACTGTCTCGTTCCACAT 58.244 47.619 2.51 0.00 41.65 3.21
620 760 2.218953 GACAACTGTCTCGTTCCACA 57.781 50.000 2.51 0.00 41.65 4.17
633 773 1.721487 GCACGCACAACAGACAACT 59.279 52.632 0.00 0.00 0.00 3.16
634 774 1.651132 CGCACGCACAACAGACAAC 60.651 57.895 0.00 0.00 0.00 3.32
635 775 2.706432 CGCACGCACAACAGACAA 59.294 55.556 0.00 0.00 0.00 3.18
636 776 3.268603 CCGCACGCACAACAGACA 61.269 61.111 0.00 0.00 0.00 3.41
637 777 4.666532 GCCGCACGCACAACAGAC 62.667 66.667 0.00 0.00 37.47 3.51
653 793 4.451150 TCGATGAGGGTGGCACGC 62.451 66.667 25.43 25.43 38.67 5.34
654 794 2.507110 AAGTCGATGAGGGTGGCACG 62.507 60.000 12.17 0.00 0.00 5.34
655 795 0.321653 AAAGTCGATGAGGGTGGCAC 60.322 55.000 9.70 9.70 0.00 5.01
656 796 0.321564 CAAAGTCGATGAGGGTGGCA 60.322 55.000 0.00 0.00 0.00 4.92
657 797 1.648467 GCAAAGTCGATGAGGGTGGC 61.648 60.000 0.00 0.00 0.00 5.01
658 798 1.026718 GGCAAAGTCGATGAGGGTGG 61.027 60.000 0.00 0.00 0.00 4.61
659 799 0.036010 AGGCAAAGTCGATGAGGGTG 60.036 55.000 0.00 0.00 0.00 4.61
660 800 0.250513 GAGGCAAAGTCGATGAGGGT 59.749 55.000 0.00 0.00 0.00 4.34
661 801 0.539051 AGAGGCAAAGTCGATGAGGG 59.461 55.000 0.00 0.00 0.00 4.30
662 802 1.649664 CAGAGGCAAAGTCGATGAGG 58.350 55.000 0.00 0.00 0.00 3.86
663 803 1.005340 GCAGAGGCAAAGTCGATGAG 58.995 55.000 0.00 0.00 40.72 2.90
664 804 0.391661 GGCAGAGGCAAAGTCGATGA 60.392 55.000 0.00 0.00 43.71 2.92
665 805 0.392193 AGGCAGAGGCAAAGTCGATG 60.392 55.000 0.00 0.00 43.71 3.84
666 806 0.107945 GAGGCAGAGGCAAAGTCGAT 60.108 55.000 0.00 0.00 43.71 3.59
667 807 1.188219 AGAGGCAGAGGCAAAGTCGA 61.188 55.000 0.00 0.00 43.71 4.20
668 808 0.532573 TAGAGGCAGAGGCAAAGTCG 59.467 55.000 0.00 0.00 43.71 4.18
669 809 2.626840 CTTAGAGGCAGAGGCAAAGTC 58.373 52.381 0.00 0.00 43.71 3.01
670 810 1.339535 GCTTAGAGGCAGAGGCAAAGT 60.340 52.381 0.00 0.00 43.71 2.66
671 811 1.377536 GCTTAGAGGCAGAGGCAAAG 58.622 55.000 0.00 0.00 43.71 2.77
672 812 0.391661 CGCTTAGAGGCAGAGGCAAA 60.392 55.000 0.00 0.00 43.71 3.68
673 813 1.219124 CGCTTAGAGGCAGAGGCAA 59.781 57.895 0.00 0.00 43.71 4.52
674 814 1.544825 AACGCTTAGAGGCAGAGGCA 61.545 55.000 0.00 0.00 43.71 4.75
675 815 1.086634 CAACGCTTAGAGGCAGAGGC 61.087 60.000 0.00 0.00 40.13 4.70
676 816 0.247736 ACAACGCTTAGAGGCAGAGG 59.752 55.000 0.00 0.00 0.00 3.69
677 817 1.634702 GACAACGCTTAGAGGCAGAG 58.365 55.000 0.00 0.00 0.00 3.35
678 818 0.109272 CGACAACGCTTAGAGGCAGA 60.109 55.000 0.00 0.00 0.00 4.26
679 819 0.388649 ACGACAACGCTTAGAGGCAG 60.389 55.000 0.00 0.00 43.96 4.85
680 820 0.388134 GACGACAACGCTTAGAGGCA 60.388 55.000 0.00 0.00 43.96 4.75
681 821 1.077089 GGACGACAACGCTTAGAGGC 61.077 60.000 0.00 0.00 43.96 4.70
682 822 0.242825 TGGACGACAACGCTTAGAGG 59.757 55.000 0.00 0.00 43.96 3.69
683 823 1.337821 GTGGACGACAACGCTTAGAG 58.662 55.000 0.00 0.00 43.96 2.43
684 824 0.038892 GGTGGACGACAACGCTTAGA 60.039 55.000 0.00 0.00 43.96 2.10
685 825 0.038526 AGGTGGACGACAACGCTTAG 60.039 55.000 0.00 0.00 43.31 2.18
686 826 0.038892 GAGGTGGACGACAACGCTTA 60.039 55.000 0.00 0.00 43.31 3.09
687 827 1.300697 GAGGTGGACGACAACGCTT 60.301 57.895 0.00 0.00 43.31 4.68
688 828 2.201022 AGAGGTGGACGACAACGCT 61.201 57.895 0.00 0.00 42.48 5.07
689 829 1.282930 GAAGAGGTGGACGACAACGC 61.283 60.000 0.00 0.00 43.31 4.84
690 830 0.314302 AGAAGAGGTGGACGACAACG 59.686 55.000 0.00 0.00 43.31 4.10
691 831 2.557490 AGTAGAAGAGGTGGACGACAAC 59.443 50.000 0.00 0.00 36.91 3.32
692 832 2.818432 GAGTAGAAGAGGTGGACGACAA 59.182 50.000 0.00 0.00 0.00 3.18
693 833 2.434428 GAGTAGAAGAGGTGGACGACA 58.566 52.381 0.00 0.00 0.00 4.35
694 834 1.744522 GGAGTAGAAGAGGTGGACGAC 59.255 57.143 0.00 0.00 0.00 4.34
695 835 1.340795 GGGAGTAGAAGAGGTGGACGA 60.341 57.143 0.00 0.00 0.00 4.20
696 836 1.104630 GGGAGTAGAAGAGGTGGACG 58.895 60.000 0.00 0.00 0.00 4.79
697 837 2.380941 GAGGGAGTAGAAGAGGTGGAC 58.619 57.143 0.00 0.00 0.00 4.02
698 838 1.288335 GGAGGGAGTAGAAGAGGTGGA 59.712 57.143 0.00 0.00 0.00 4.02
699 839 1.783071 GGAGGGAGTAGAAGAGGTGG 58.217 60.000 0.00 0.00 0.00 4.61
700 840 1.341187 ACGGAGGGAGTAGAAGAGGTG 60.341 57.143 0.00 0.00 0.00 4.00
701 841 1.001282 ACGGAGGGAGTAGAAGAGGT 58.999 55.000 0.00 0.00 0.00 3.85
702 842 2.025898 GAACGGAGGGAGTAGAAGAGG 58.974 57.143 0.00 0.00 0.00 3.69
703 843 1.671845 CGAACGGAGGGAGTAGAAGAG 59.328 57.143 0.00 0.00 0.00 2.85
704 844 1.280133 TCGAACGGAGGGAGTAGAAGA 59.720 52.381 0.00 0.00 0.00 2.87
705 845 1.747709 TCGAACGGAGGGAGTAGAAG 58.252 55.000 0.00 0.00 0.00 2.85
706 846 2.205022 TTCGAACGGAGGGAGTAGAA 57.795 50.000 0.00 0.00 0.00 2.10
707 847 2.205022 TTTCGAACGGAGGGAGTAGA 57.795 50.000 0.00 0.00 0.00 2.59
708 848 3.521947 AATTTCGAACGGAGGGAGTAG 57.478 47.619 0.00 0.00 0.00 2.57
709 849 4.019174 ACTAATTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
710 850 2.830321 ACTAATTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
711 851 3.521947 ACTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
712 852 3.007182 ACAACTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
713 853 3.332034 ACAACTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
714 854 3.991773 TGACAACTAATTTCGAACGGAGG 59.008 43.478 0.00 0.00 0.00 4.30
715 855 4.446385 TGTGACAACTAATTTCGAACGGAG 59.554 41.667 0.00 0.00 0.00 4.63
716 856 4.370049 TGTGACAACTAATTTCGAACGGA 58.630 39.130 0.00 0.00 0.00 4.69
717 857 4.718858 TGTGACAACTAATTTCGAACGG 57.281 40.909 0.00 0.00 0.00 4.44
718 858 7.425915 TTTTTGTGACAACTAATTTCGAACG 57.574 32.000 0.00 0.00 0.00 3.95
785 925 9.673454 GGAACTACTCGTTTAAAAATTGAATGT 57.327 29.630 0.00 0.00 35.56 2.71
786 926 8.837059 CGGAACTACTCGTTTAAAAATTGAATG 58.163 33.333 0.00 0.00 35.56 2.67
787 927 8.562052 ACGGAACTACTCGTTTAAAAATTGAAT 58.438 29.630 0.00 0.00 36.04 2.57
788 928 7.918643 ACGGAACTACTCGTTTAAAAATTGAA 58.081 30.769 0.00 0.00 36.04 2.69
789 929 7.481275 ACGGAACTACTCGTTTAAAAATTGA 57.519 32.000 0.00 0.00 36.04 2.57
800 940 2.094338 GGGAATGAACGGAACTACTCGT 60.094 50.000 0.00 0.00 41.71 4.18
801 941 2.094390 TGGGAATGAACGGAACTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
802 942 3.604875 TGGGAATGAACGGAACTACTC 57.395 47.619 0.00 0.00 0.00 2.59
803 943 3.868754 GCTTGGGAATGAACGGAACTACT 60.869 47.826 0.00 0.00 0.00 2.57
804 944 2.418976 GCTTGGGAATGAACGGAACTAC 59.581 50.000 0.00 0.00 0.00 2.73
805 945 2.039216 TGCTTGGGAATGAACGGAACTA 59.961 45.455 0.00 0.00 0.00 2.24
806 946 1.202879 TGCTTGGGAATGAACGGAACT 60.203 47.619 0.00 0.00 0.00 3.01
807 947 1.200020 CTGCTTGGGAATGAACGGAAC 59.800 52.381 0.00 0.00 0.00 3.62
808 948 1.202879 ACTGCTTGGGAATGAACGGAA 60.203 47.619 0.00 0.00 0.00 4.30
809 949 0.400213 ACTGCTTGGGAATGAACGGA 59.600 50.000 0.00 0.00 0.00 4.69
810 950 1.247567 AACTGCTTGGGAATGAACGG 58.752 50.000 0.00 0.00 0.00 4.44
811 951 2.554032 AGAAACTGCTTGGGAATGAACG 59.446 45.455 0.00 0.00 0.00 3.95
812 952 4.279420 AGAAGAAACTGCTTGGGAATGAAC 59.721 41.667 0.00 0.00 0.00 3.18
813 953 4.473444 AGAAGAAACTGCTTGGGAATGAA 58.527 39.130 0.00 0.00 0.00 2.57
814 954 4.074970 GAGAAGAAACTGCTTGGGAATGA 58.925 43.478 0.00 0.00 0.00 2.57
815 955 3.192212 GGAGAAGAAACTGCTTGGGAATG 59.808 47.826 0.00 0.00 0.00 2.67
816 956 3.181429 TGGAGAAGAAACTGCTTGGGAAT 60.181 43.478 0.00 0.00 0.00 3.01
817 957 2.174639 TGGAGAAGAAACTGCTTGGGAA 59.825 45.455 0.00 0.00 0.00 3.97
818 958 1.774254 TGGAGAAGAAACTGCTTGGGA 59.226 47.619 0.00 0.00 0.00 4.37
819 959 2.276732 TGGAGAAGAAACTGCTTGGG 57.723 50.000 0.00 0.00 0.00 4.12
820 960 2.751806 GGATGGAGAAGAAACTGCTTGG 59.248 50.000 0.00 0.00 0.00 3.61
821 961 2.751806 GGGATGGAGAAGAAACTGCTTG 59.248 50.000 0.00 0.00 0.00 4.01
822 962 2.291217 GGGGATGGAGAAGAAACTGCTT 60.291 50.000 0.00 0.00 0.00 3.91
823 963 1.283321 GGGGATGGAGAAGAAACTGCT 59.717 52.381 0.00 0.00 0.00 4.24
824 964 1.683319 GGGGGATGGAGAAGAAACTGC 60.683 57.143 0.00 0.00 0.00 4.40
825 965 2.426842 GGGGGATGGAGAAGAAACTG 57.573 55.000 0.00 0.00 0.00 3.16
841 981 3.952628 GAAACAGAGGACGCGGGGG 62.953 68.421 12.47 0.00 0.00 5.40
842 982 2.434359 GAAACAGAGGACGCGGGG 60.434 66.667 12.47 0.00 0.00 5.73
843 983 2.809601 CGAAACAGAGGACGCGGG 60.810 66.667 12.47 0.00 0.00 6.13
844 984 2.809601 CCGAAACAGAGGACGCGG 60.810 66.667 12.47 0.00 0.00 6.46
845 985 2.537792 TAGCCGAAACAGAGGACGCG 62.538 60.000 3.53 3.53 0.00 6.01
846 986 1.077089 GTAGCCGAAACAGAGGACGC 61.077 60.000 0.00 0.00 0.00 5.19
847 987 0.242825 TGTAGCCGAAACAGAGGACG 59.757 55.000 0.00 0.00 0.00 4.79
848 988 1.272769 AGTGTAGCCGAAACAGAGGAC 59.727 52.381 0.00 0.00 0.00 3.85
871 1011 3.350031 ATCAAGCGGAAGGGGCAGG 62.350 63.158 0.00 0.00 0.00 4.85
920 1060 2.812836 ATTCACTGGATGCCATGTCA 57.187 45.000 0.00 0.00 30.82 3.58
965 1105 5.730550 TGACCTTCTAATTTATGCTGACGT 58.269 37.500 0.00 0.00 0.00 4.34
994 1134 0.454452 GGAAGAAACGGCATTGTCGC 60.454 55.000 11.15 0.00 32.11 5.19
997 1137 1.241315 CCGGGAAGAAACGGCATTGT 61.241 55.000 0.00 0.00 43.96 2.71
1041 1181 1.876156 GCATGACTACCTGGCATAAGC 59.124 52.381 0.00 0.00 43.93 3.09
1042 1182 3.136763 CAGCATGACTACCTGGCATAAG 58.863 50.000 0.00 0.00 43.93 1.73
1103 1247 2.421619 CAAGACTTCCCTGCTGAAGAC 58.578 52.381 15.12 10.37 43.60 3.01
1199 1347 0.935898 CACGATCTCATCTTGGCTGC 59.064 55.000 0.00 0.00 0.00 5.25
1219 1367 4.373116 CACCGTGGGGACGTCCAG 62.373 72.222 34.40 21.28 37.50 3.86
2314 2512 1.751351 TGGAGTCCTTGATACTGCTCG 59.249 52.381 11.33 0.00 36.38 5.03
2316 2514 3.177228 ACTTGGAGTCCTTGATACTGCT 58.823 45.455 11.33 0.00 36.38 4.24
2317 2515 3.196685 AGACTTGGAGTCCTTGATACTGC 59.803 47.826 11.33 0.00 46.18 4.40
2319 2517 3.196685 GCAGACTTGGAGTCCTTGATACT 59.803 47.826 11.33 0.00 46.18 2.12
2446 2692 2.032528 TTGTCCGCTGCCTTCCTG 59.967 61.111 0.00 0.00 0.00 3.86
2512 2938 0.331616 GGTCCAACCCTGCTTGGTAT 59.668 55.000 2.69 0.00 41.49 2.73
2591 4591 1.002624 GCCCAGGATTCGTGGTCAA 60.003 57.895 20.80 0.00 37.67 3.18
2999 5005 3.490348 CTTGAAACCCACCAGACTCATT 58.510 45.455 0.00 0.00 0.00 2.57
3124 5130 3.134804 GCCTGTATAGATGTGGGTTCACT 59.865 47.826 0.00 0.00 43.94 3.41
3293 5299 8.918202 TTATTCAAGAACAATAGGAACAGTGT 57.082 30.769 0.00 0.00 0.00 3.55
3336 5363 1.065854 CCTTCTCTGGCTTCGGTTGAT 60.066 52.381 0.00 0.00 0.00 2.57
3586 5631 5.359009 CCACTCCAGTAGCAAAATGATGATT 59.641 40.000 0.00 0.00 0.00 2.57
3754 5799 1.250154 TTGCAATGTAGGCCAGCACC 61.250 55.000 5.01 0.00 34.56 5.01
3809 5854 0.329596 GGGGGCTGAGAACTGTCATT 59.670 55.000 0.00 0.00 0.00 2.57
4057 6105 6.479972 TCACCCCTGTTGTACTATATCTTG 57.520 41.667 0.00 0.00 0.00 3.02
4100 6148 4.668636 AGACTGCTATATAGACACTCCCC 58.331 47.826 14.16 0.00 0.00 4.81
4119 6167 4.498241 GCCAATTGGAAATCAGGAAAGAC 58.502 43.478 29.02 0.79 37.39 3.01
4124 6172 2.566724 GTTGGCCAATTGGAAATCAGGA 59.433 45.455 29.02 3.68 37.39 3.86
4125 6173 2.568509 AGTTGGCCAATTGGAAATCAGG 59.431 45.455 29.02 0.00 37.39 3.86
4173 6221 2.036764 GAGCCAGCAATTACGCGGAC 62.037 60.000 12.47 0.00 36.85 4.79
4212 6260 8.977267 AAAGAAATATCCTCTTCCATCTTCAG 57.023 34.615 1.57 0.00 31.85 3.02
4257 6305 4.436050 CCGACTGATTTCCAATTCGACAAG 60.436 45.833 0.00 0.00 34.15 3.16
4266 6314 0.248012 TAGCGCCGACTGATTTCCAA 59.752 50.000 2.29 0.00 0.00 3.53
4267 6315 0.248012 TTAGCGCCGACTGATTTCCA 59.752 50.000 2.29 0.00 0.00 3.53
4272 6320 3.728076 TTCTATTTAGCGCCGACTGAT 57.272 42.857 2.29 0.00 0.00 2.90
4274 6322 4.318831 GGATTTTCTATTTAGCGCCGACTG 60.319 45.833 2.29 0.00 0.00 3.51
4276 6324 3.362693 CGGATTTTCTATTTAGCGCCGAC 60.363 47.826 2.29 0.00 38.57 4.79
4278 6326 2.542595 ACGGATTTTCTATTTAGCGCCG 59.457 45.455 2.29 0.00 41.72 6.46
4279 6327 4.547406 AACGGATTTTCTATTTAGCGCC 57.453 40.909 2.29 0.00 0.00 6.53
4280 6328 6.864560 AAAAACGGATTTTCTATTTAGCGC 57.135 33.333 0.00 0.00 36.49 5.92
4291 6339 5.826208 ACAGGTGTAGAGAAAAACGGATTTT 59.174 36.000 0.00 0.00 43.85 1.82
4292 6340 5.374071 ACAGGTGTAGAGAAAAACGGATTT 58.626 37.500 0.00 0.00 0.00 2.17
4293 6341 4.969484 ACAGGTGTAGAGAAAAACGGATT 58.031 39.130 0.00 0.00 0.00 3.01
4333 6381 1.947456 GAAGAAACCCGACAAAGCTGT 59.053 47.619 0.00 0.00 38.98 4.40
4437 6485 1.318576 AGAGTTGCCCTTTTTGGTCG 58.681 50.000 0.00 0.00 0.00 4.79
4456 6504 4.576053 CAGTCGGATATTCATGAGGCAAAA 59.424 41.667 0.00 0.00 0.00 2.44
4473 6521 2.983592 GGTTTGCACCCCAGTCGG 60.984 66.667 0.00 0.00 37.03 4.79
4475 6523 0.467290 TTCAGGTTTGCACCCCAGTC 60.467 55.000 3.79 0.00 45.63 3.51
4476 6524 0.188342 ATTCAGGTTTGCACCCCAGT 59.812 50.000 3.79 0.00 45.63 4.00
4477 6525 0.890683 GATTCAGGTTTGCACCCCAG 59.109 55.000 3.79 0.00 45.63 4.45
4478 6526 0.541764 GGATTCAGGTTTGCACCCCA 60.542 55.000 3.79 0.00 45.63 4.96
4479 6527 0.541764 TGGATTCAGGTTTGCACCCC 60.542 55.000 0.00 0.00 45.63 4.95
4487 6536 3.181429 ACCACAATCACTGGATTCAGGTT 60.181 43.478 5.84 0.00 41.44 3.50
4502 6551 1.202710 TGCGTGTGAACCTACCACAAT 60.203 47.619 0.00 0.00 44.91 2.71
4528 6577 2.104111 TCGGCCACTTACCATGGATTAG 59.896 50.000 21.47 14.20 39.87 1.73
4600 6649 6.327104 TCAGGGATAGTTATAGGCGGTAAAAA 59.673 38.462 0.00 0.00 0.00 1.94
4664 6713 7.459795 TGTGTAATTGAGCCATATTGTTTGA 57.540 32.000 0.00 0.00 0.00 2.69
4803 6852 3.694566 GTCTCCAAGTGGTGTGTTTTCTT 59.305 43.478 0.00 0.00 36.34 2.52
4843 6893 5.191722 TCTGGCCTATTTCTTTGAGGTACAT 59.808 40.000 3.32 0.00 32.53 2.29
4845 6895 5.099042 TCTGGCCTATTTCTTTGAGGTAC 57.901 43.478 3.32 0.00 32.53 3.34
4858 6908 1.127343 GAGCAGGACTTCTGGCCTAT 58.873 55.000 3.32 0.00 43.54 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.