Multiple sequence alignment - TraesCS7B01G124300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G124300 chr7B 100.000 4899 0 0 1 4899 145680632 145675734 0.000000e+00 9047.0
1 TraesCS7B01G124300 chr7D 96.230 3793 87 10 742 4516 179488883 179485129 0.000000e+00 6161.0
2 TraesCS7B01G124300 chr7D 91.385 592 28 4 1 576 179489821 179489237 0.000000e+00 789.0
3 TraesCS7B01G124300 chr7D 93.267 401 23 1 4503 4899 179484914 179484514 5.460000e-164 588.0
4 TraesCS7B01G124300 chr7D 75.350 856 185 21 2343 3182 17859596 17860441 5.950000e-104 388.0
5 TraesCS7B01G124300 chr7A 90.389 1363 75 19 742 2057 183839787 183838434 0.000000e+00 1740.0
6 TraesCS7B01G124300 chr7A 88.849 1112 100 13 2102 3199 183838443 183837342 0.000000e+00 1345.0
7 TraesCS7B01G124300 chr7A 88.839 448 39 9 3475 3914 183837223 183836779 1.550000e-149 540.0
8 TraesCS7B01G124300 chr7A 81.879 596 85 15 4306 4895 183834739 183834161 9.540000e-132 481.0
9 TraesCS7B01G124300 chr7A 94.118 204 11 1 370 573 183840369 183840571 4.760000e-80 309.0
10 TraesCS7B01G124300 chr7A 94.030 201 9 2 373 573 183840307 183840110 7.970000e-78 302.0
11 TraesCS7B01G124300 chr7A 73.844 822 180 24 2343 3139 17347210 17348021 1.330000e-75 294.0
12 TraesCS7B01G124300 chr3D 86.213 1117 126 18 2100 3189 570043412 570042297 0.000000e+00 1184.0
13 TraesCS7B01G124300 chr3D 86.758 438 53 5 3438 3871 570042228 570041792 2.650000e-132 483.0
14 TraesCS7B01G124300 chr3D 85.682 447 61 3 1604 2050 570043851 570043408 7.430000e-128 468.0
15 TraesCS7B01G124300 chr3A 86.164 1113 128 17 2100 3189 702579912 702578803 0.000000e+00 1179.0
16 TraesCS7B01G124300 chr3A 85.558 457 61 4 3438 3890 702578734 702578279 1.600000e-129 473.0
17 TraesCS7B01G124300 chr3A 85.459 447 62 3 1604 2050 702580351 702579908 3.450000e-126 462.0
18 TraesCS7B01G124300 chr3B 88.551 856 93 5 2321 3175 756677055 756676204 0.000000e+00 1033.0
19 TraesCS7B01G124300 chr3B 88.049 410 47 2 3432 3840 756676094 756675686 7.370000e-133 484.0
20 TraesCS7B01G124300 chr3B 83.815 173 28 0 1872 2044 756677439 756677267 1.090000e-36 165.0
21 TraesCS7B01G124300 chr4A 76.609 808 171 14 2343 3139 715745331 715744531 3.500000e-116 429.0
22 TraesCS7B01G124300 chr4A 75.966 828 174 19 2342 3155 715817734 715818550 2.120000e-108 403.0
23 TraesCS7B01G124300 chr4A 96.970 33 1 0 701 733 502025764 502025732 6.850000e-04 56.5
24 TraesCS7B01G124300 chrUn 80.645 403 55 14 1075 1462 468676744 468676350 1.730000e-74 291.0
25 TraesCS7B01G124300 chrUn 89.899 99 10 0 1075 1173 90516630 90516728 1.430000e-25 128.0
26 TraesCS7B01G124300 chr6B 89.474 57 4 2 685 739 492505649 492505593 2.450000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G124300 chr7B 145675734 145680632 4898 True 9047.000000 9047 100.000000 1 4899 1 chr7B.!!$R1 4898
1 TraesCS7B01G124300 chr7D 179484514 179489821 5307 True 2512.666667 6161 93.627333 1 4899 3 chr7D.!!$R1 4898
2 TraesCS7B01G124300 chr7D 17859596 17860441 845 False 388.000000 388 75.350000 2343 3182 1 chr7D.!!$F1 839
3 TraesCS7B01G124300 chr7A 183834161 183840307 6146 True 881.600000 1740 88.797200 373 4895 5 chr7A.!!$R1 4522
4 TraesCS7B01G124300 chr7A 17347210 17348021 811 False 294.000000 294 73.844000 2343 3139 1 chr7A.!!$F1 796
5 TraesCS7B01G124300 chr3D 570041792 570043851 2059 True 711.666667 1184 86.217667 1604 3871 3 chr3D.!!$R1 2267
6 TraesCS7B01G124300 chr3A 702578279 702580351 2072 True 704.666667 1179 85.727000 1604 3890 3 chr3A.!!$R1 2286
7 TraesCS7B01G124300 chr3B 756675686 756677439 1753 True 560.666667 1033 86.805000 1872 3840 3 chr3B.!!$R1 1968
8 TraesCS7B01G124300 chr4A 715744531 715745331 800 True 429.000000 429 76.609000 2343 3139 1 chr4A.!!$R2 796
9 TraesCS7B01G124300 chr4A 715817734 715818550 816 False 403.000000 403 75.966000 2342 3155 1 chr4A.!!$F1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 386 0.033405 ATGCTCCAGAAATGCCAGCT 60.033 50.000 0.00 0.00 0.00 4.24 F
902 1108 0.397941 ATGGGGATGCCATACAGACG 59.602 55.000 5.30 0.00 0.00 4.18 F
1404 1613 0.621571 TACTTGGCCTCATGGGAGCT 60.622 55.000 3.32 0.00 39.96 4.09 F
2010 2260 1.382522 CTGGTGCGGTTCTTGCATAT 58.617 50.000 0.00 0.00 45.34 1.78 F
3241 3593 1.562008 TCGGACTTAAATGCCATGGGA 59.438 47.619 15.13 12.25 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 1774 0.107752 CTCAGGAGCCTTGCCTTCTC 60.108 60.000 0.00 0.0 32.12 2.87 R
2742 3046 1.199097 CGGGATCTTGGTTTTTGTCCG 59.801 52.381 0.00 0.0 0.00 4.79 R
3319 3671 0.691078 GCCCAGAGGACCCATCTACA 60.691 60.000 0.00 0.0 33.47 2.74 R
3762 4117 0.326048 CCTGGACATCTCCCACTCCT 60.326 60.000 0.00 0.0 35.34 3.69 R
4201 5719 1.279271 AGGCCATAACAGCTCGAAACT 59.721 47.619 5.01 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.422840 CACAACTGACAAATGCTTGTTCA 58.577 39.130 0.00 0.00 45.98 3.18
71 72 0.323725 AGTTGCATACAAGCCTGGGG 60.324 55.000 0.00 0.00 36.16 4.96
161 162 2.931969 GCAGTGCAATTTGCTTATTCCC 59.068 45.455 21.19 1.55 45.31 3.97
162 163 3.524541 CAGTGCAATTTGCTTATTCCCC 58.475 45.455 21.19 1.17 45.31 4.81
221 222 2.744823 CGGTGCTTCATGGCCTTATGTA 60.745 50.000 3.32 0.00 0.00 2.29
225 226 2.951642 GCTTCATGGCCTTATGTAGCAA 59.048 45.455 22.22 3.31 45.31 3.91
252 269 2.434428 CCATTCTGCTCAGTTTCTGCT 58.566 47.619 0.00 0.00 0.00 4.24
285 302 1.931172 CCAGTGACCTTATTTACGGCG 59.069 52.381 4.80 4.80 0.00 6.46
301 318 2.892425 CGGAGATGGAACTGCGGC 60.892 66.667 0.00 0.00 45.24 6.53
310 327 1.141019 GAACTGCGGCGTCATCCTA 59.859 57.895 9.37 0.00 0.00 2.94
319 336 0.948141 GCGTCATCCTAGCAGCATCC 60.948 60.000 0.00 0.00 0.00 3.51
338 355 2.162681 CCCTTCCAAACATGGTGAGTC 58.837 52.381 0.00 0.00 0.00 3.36
357 374 2.435805 GTCTTCCCTCACATATGCTCCA 59.564 50.000 1.58 0.00 0.00 3.86
369 386 0.033405 ATGCTCCAGAAATGCCAGCT 60.033 50.000 0.00 0.00 0.00 4.24
403 420 2.707849 GCCAACAGCCTCCTGCATG 61.708 63.158 0.00 0.00 43.02 4.06
414 431 3.633525 GCCTCCTGCATGACATATTTCAA 59.366 43.478 0.00 0.00 40.77 2.69
454 471 2.270257 GCACTGGCCTCATGCAACA 61.270 57.895 18.06 0.00 43.89 3.33
463 480 2.669391 GCCTCATGCAACACAAGTAAGC 60.669 50.000 0.00 0.00 40.77 3.09
549 566 5.744171 TGAATGATTGAAGCTTGCCTAGTA 58.256 37.500 2.10 0.00 0.00 1.82
561 578 4.732355 GCTTGCCTAGTAAGAGAGAAGACG 60.732 50.000 7.87 0.00 0.00 4.18
573 590 3.165875 AGAGAAGACGATGAAGGTTCCA 58.834 45.455 0.00 0.00 0.00 3.53
576 593 3.071023 AGAAGACGATGAAGGTTCCAACA 59.929 43.478 0.00 0.00 0.00 3.33
577 594 3.703001 AGACGATGAAGGTTCCAACAT 57.297 42.857 0.00 0.00 0.00 2.71
581 598 4.906618 ACGATGAAGGTTCCAACATAGTT 58.093 39.130 0.00 0.00 0.00 2.24
582 599 6.045072 ACGATGAAGGTTCCAACATAGTTA 57.955 37.500 0.00 0.00 0.00 2.24
584 601 6.370718 ACGATGAAGGTTCCAACATAGTTAAC 59.629 38.462 0.00 0.00 0.00 2.01
586 603 7.201530 CGATGAAGGTTCCAACATAGTTAACTC 60.202 40.741 12.39 0.00 0.00 3.01
587 604 6.235664 TGAAGGTTCCAACATAGTTAACTCC 58.764 40.000 12.39 3.72 0.00 3.85
588 605 5.836024 AGGTTCCAACATAGTTAACTCCA 57.164 39.130 12.39 0.00 0.00 3.86
589 606 6.195600 AGGTTCCAACATAGTTAACTCCAA 57.804 37.500 12.39 0.00 0.00 3.53
590 607 6.607019 AGGTTCCAACATAGTTAACTCCAAA 58.393 36.000 12.39 0.00 0.00 3.28
591 608 7.238710 AGGTTCCAACATAGTTAACTCCAAAT 58.761 34.615 12.39 0.00 0.00 2.32
592 609 7.728532 AGGTTCCAACATAGTTAACTCCAAATT 59.271 33.333 12.39 0.00 0.00 1.82
593 610 7.812669 GGTTCCAACATAGTTAACTCCAAATTG 59.187 37.037 12.39 10.43 0.00 2.32
594 611 7.461182 TCCAACATAGTTAACTCCAAATTGG 57.539 36.000 12.39 17.85 39.43 3.16
597 614 7.322664 CAACATAGTTAACTCCAAATTGGCAT 58.677 34.615 12.39 0.00 37.47 4.40
599 616 8.225603 ACATAGTTAACTCCAAATTGGCATAG 57.774 34.615 12.39 2.27 37.47 2.23
600 617 7.834181 ACATAGTTAACTCCAAATTGGCATAGT 59.166 33.333 12.39 2.96 37.47 2.12
601 618 8.686334 CATAGTTAACTCCAAATTGGCATAGTT 58.314 33.333 12.39 17.81 36.47 2.24
604 621 9.255029 AGTTAACTCCAAATTGGCATAGTTAAT 57.745 29.630 26.30 17.89 41.83 1.40
605 622 9.301153 GTTAACTCCAAATTGGCATAGTTAATG 57.699 33.333 26.30 6.11 41.83 1.90
606 623 6.469782 ACTCCAAATTGGCATAGTTAATGG 57.530 37.500 7.24 0.00 37.47 3.16
607 624 5.957774 ACTCCAAATTGGCATAGTTAATGGT 59.042 36.000 7.24 0.00 37.47 3.55
608 625 6.440328 ACTCCAAATTGGCATAGTTAATGGTT 59.560 34.615 7.24 0.00 37.47 3.67
609 626 7.617723 ACTCCAAATTGGCATAGTTAATGGTTA 59.382 33.333 7.24 0.00 37.47 2.85
610 627 8.546083 TCCAAATTGGCATAGTTAATGGTTAT 57.454 30.769 7.24 0.00 37.47 1.89
611 628 8.420222 TCCAAATTGGCATAGTTAATGGTTATG 58.580 33.333 7.24 0.00 37.47 1.90
617 634 8.402798 TGGCATAGTTAATGGTTATGTATTGG 57.597 34.615 0.00 0.00 35.99 3.16
618 635 7.040062 TGGCATAGTTAATGGTTATGTATTGGC 60.040 37.037 0.00 0.00 35.99 4.52
626 643 5.110814 TGGTTATGTATTGGCTTACAGCT 57.889 39.130 6.92 0.00 41.99 4.24
627 644 6.241882 TGGTTATGTATTGGCTTACAGCTA 57.758 37.500 6.92 0.00 41.99 3.32
628 645 6.654959 TGGTTATGTATTGGCTTACAGCTAA 58.345 36.000 0.00 0.00 45.66 3.09
635 652 2.368439 TGGCTTACAGCTAATGCAAGG 58.632 47.619 0.00 0.00 41.99 3.61
637 654 3.054728 TGGCTTACAGCTAATGCAAGGTA 60.055 43.478 0.00 0.00 41.99 3.08
638 655 3.561725 GGCTTACAGCTAATGCAAGGTAG 59.438 47.826 0.00 0.00 41.99 3.18
639 656 3.002759 GCTTACAGCTAATGCAAGGTAGC 59.997 47.826 15.87 15.87 42.56 3.58
646 663 3.499918 GCTAATGCAAGGTAGCTACATGG 59.500 47.826 24.75 17.10 39.73 3.66
648 665 3.931907 ATGCAAGGTAGCTACATGGAA 57.068 42.857 24.75 11.39 34.99 3.53
649 666 3.931907 TGCAAGGTAGCTACATGGAAT 57.068 42.857 24.75 0.07 34.99 3.01
650 667 5.567037 ATGCAAGGTAGCTACATGGAATA 57.433 39.130 24.75 6.79 34.99 1.75
651 668 5.366482 TGCAAGGTAGCTACATGGAATAA 57.634 39.130 24.75 0.56 34.99 1.40
652 669 5.368145 TGCAAGGTAGCTACATGGAATAAG 58.632 41.667 24.75 5.03 34.99 1.73
653 670 4.214332 GCAAGGTAGCTACATGGAATAAGC 59.786 45.833 24.75 10.50 35.40 3.09
654 671 5.368145 CAAGGTAGCTACATGGAATAAGCA 58.632 41.667 24.75 0.00 37.07 3.91
655 672 5.832539 AGGTAGCTACATGGAATAAGCAT 57.167 39.130 24.75 0.00 37.07 3.79
656 673 5.799213 AGGTAGCTACATGGAATAAGCATC 58.201 41.667 24.75 2.83 37.07 3.91
657 674 5.545723 AGGTAGCTACATGGAATAAGCATCT 59.454 40.000 24.75 5.10 37.07 2.90
658 675 5.872070 GGTAGCTACATGGAATAAGCATCTC 59.128 44.000 24.75 0.00 37.07 2.75
659 676 4.904241 AGCTACATGGAATAAGCATCTCC 58.096 43.478 0.00 0.00 37.07 3.71
661 678 4.505566 GCTACATGGAATAAGCATCTCCCA 60.506 45.833 0.00 0.00 35.31 4.37
664 681 4.202440 ACATGGAATAAGCATCTCCCAGAG 60.202 45.833 0.00 0.00 0.00 3.35
665 682 2.105477 TGGAATAAGCATCTCCCAGAGC 59.895 50.000 0.00 0.00 0.00 4.09
666 683 2.371510 GGAATAAGCATCTCCCAGAGCT 59.628 50.000 0.00 0.00 39.37 4.09
667 684 3.556843 GGAATAAGCATCTCCCAGAGCTC 60.557 52.174 5.27 5.27 36.07 4.09
668 685 2.165357 TAAGCATCTCCCAGAGCTCA 57.835 50.000 17.77 0.00 36.07 4.26
669 686 1.283347 AAGCATCTCCCAGAGCTCAA 58.717 50.000 17.77 0.00 36.07 3.02
670 687 0.831966 AGCATCTCCCAGAGCTCAAG 59.168 55.000 17.77 7.89 30.05 3.02
671 688 0.540923 GCATCTCCCAGAGCTCAAGT 59.459 55.000 17.77 0.00 0.00 3.16
672 689 1.759445 GCATCTCCCAGAGCTCAAGTA 59.241 52.381 17.77 0.00 0.00 2.24
673 690 2.368221 GCATCTCCCAGAGCTCAAGTAT 59.632 50.000 17.77 0.00 0.00 2.12
676 693 5.782047 CATCTCCCAGAGCTCAAGTATTAG 58.218 45.833 17.77 3.96 0.00 1.73
678 695 5.519808 TCTCCCAGAGCTCAAGTATTAGAA 58.480 41.667 17.77 0.00 0.00 2.10
679 696 5.958380 TCTCCCAGAGCTCAAGTATTAGAAA 59.042 40.000 17.77 0.00 0.00 2.52
680 697 6.440647 TCTCCCAGAGCTCAAGTATTAGAAAA 59.559 38.462 17.77 0.00 0.00 2.29
682 699 7.633789 TCCCAGAGCTCAAGTATTAGAAAATT 58.366 34.615 17.77 0.00 0.00 1.82
683 700 8.768397 TCCCAGAGCTCAAGTATTAGAAAATTA 58.232 33.333 17.77 0.00 0.00 1.40
684 701 9.566432 CCCAGAGCTCAAGTATTAGAAAATTAT 57.434 33.333 17.77 0.00 0.00 1.28
701 718 9.765795 AGAAAATTATATACTTCCTCTGTTCGG 57.234 33.333 0.00 0.00 0.00 4.30
708 725 6.793505 ATACTTCCTCTGTTCGGAATTAGT 57.206 37.500 0.00 0.00 39.64 2.24
710 727 5.238583 ACTTCCTCTGTTCGGAATTAGTTG 58.761 41.667 0.00 0.00 39.64 3.16
713 730 3.612860 CCTCTGTTCGGAATTAGTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
714 731 2.991190 TCTGTTCGGAATTAGTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
715 732 2.993899 CTGTTCGGAATTAGTTGTCGCT 59.006 45.455 0.00 0.00 0.00 4.93
716 733 2.991190 TGTTCGGAATTAGTTGTCGCTC 59.009 45.455 0.00 0.00 0.00 5.03
717 734 2.991190 GTTCGGAATTAGTTGTCGCTCA 59.009 45.455 0.00 0.00 0.00 4.26
718 735 3.306917 TCGGAATTAGTTGTCGCTCAA 57.693 42.857 0.00 0.00 0.00 3.02
719 736 3.655486 TCGGAATTAGTTGTCGCTCAAA 58.345 40.909 0.00 0.00 37.81 2.69
720 737 3.430895 TCGGAATTAGTTGTCGCTCAAAC 59.569 43.478 0.00 0.00 37.81 2.93
722 739 4.666655 CGGAATTAGTTGTCGCTCAAACTG 60.667 45.833 5.36 0.00 37.81 3.16
723 740 4.451096 GGAATTAGTTGTCGCTCAAACTGA 59.549 41.667 5.36 0.00 37.81 3.41
724 741 5.122396 GGAATTAGTTGTCGCTCAAACTGAT 59.878 40.000 5.36 0.98 37.81 2.90
725 742 4.990543 TTAGTTGTCGCTCAAACTGATG 57.009 40.909 5.36 0.00 37.81 3.07
726 743 2.838736 AGTTGTCGCTCAAACTGATGT 58.161 42.857 0.00 0.00 37.81 3.06
727 744 3.990092 AGTTGTCGCTCAAACTGATGTA 58.010 40.909 0.00 0.00 37.81 2.29
728 745 4.569943 AGTTGTCGCTCAAACTGATGTAT 58.430 39.130 0.00 0.00 37.81 2.29
729 746 4.627467 AGTTGTCGCTCAAACTGATGTATC 59.373 41.667 0.00 0.00 37.81 2.24
730 747 4.456280 TGTCGCTCAAACTGATGTATCT 57.544 40.909 0.00 0.00 0.00 1.98
731 748 5.576447 TGTCGCTCAAACTGATGTATCTA 57.424 39.130 0.00 0.00 0.00 1.98
732 749 5.582550 TGTCGCTCAAACTGATGTATCTAG 58.417 41.667 0.00 0.00 0.00 2.43
733 750 5.357032 TGTCGCTCAAACTGATGTATCTAGA 59.643 40.000 0.00 0.00 0.00 2.43
734 751 5.683743 GTCGCTCAAACTGATGTATCTAGAC 59.316 44.000 0.00 0.00 0.00 2.59
737 754 6.266323 GCTCAAACTGATGTATCTAGACGAA 58.734 40.000 0.00 0.00 0.00 3.85
739 756 7.043722 GCTCAAACTGATGTATCTAGACGAAAG 60.044 40.741 0.00 0.00 0.00 2.62
768 974 4.776349 TGATGCCCGTTAAGTTGTCATAT 58.224 39.130 0.00 0.00 0.00 1.78
794 1000 3.390175 TGGGAAAGACAAGGGAACAAA 57.610 42.857 0.00 0.00 0.00 2.83
809 1015 9.757227 CAAGGGAACAAATATTTAAACAAGACA 57.243 29.630 0.00 0.00 0.00 3.41
816 1022 9.659830 ACAAATATTTAAACAAGACAACTCGAC 57.340 29.630 0.00 0.00 0.00 4.20
817 1023 9.878599 CAAATATTTAAACAAGACAACTCGACT 57.121 29.630 0.00 0.00 0.00 4.18
819 1025 5.630896 TTTAAACAAGACAACTCGACTCG 57.369 39.130 0.00 0.00 0.00 4.18
820 1026 3.431922 AAACAAGACAACTCGACTCGA 57.568 42.857 0.29 0.29 0.00 4.04
849 1055 1.561076 TGGCATGATTAGCAGACAGGT 59.439 47.619 0.00 0.00 0.00 4.00
863 1069 1.138464 GACAGGTAGATTCCGGGGAAC 59.862 57.143 0.00 0.00 36.91 3.62
902 1108 0.397941 ATGGGGATGCCATACAGACG 59.602 55.000 5.30 0.00 0.00 4.18
947 1153 4.495844 GCTTAACAGACCACAACTTCACAC 60.496 45.833 0.00 0.00 0.00 3.82
1003 1209 2.566724 CCACCACCAATTAGCCAAATGT 59.433 45.455 0.00 0.00 0.00 2.71
1179 1388 2.935481 CTCAACCTGCCAGGGGGA 60.935 66.667 16.70 10.88 40.58 4.81
1230 1439 1.457643 AGGCGATCCGATCCTTCCA 60.458 57.895 2.69 0.00 37.47 3.53
1257 1466 0.832983 ACTACCACCGGTACCTTGCA 60.833 55.000 6.87 0.00 37.09 4.08
1401 1610 2.421388 CGATTTACTTGGCCTCATGGGA 60.421 50.000 3.32 0.00 37.23 4.37
1404 1613 0.621571 TACTTGGCCTCATGGGAGCT 60.622 55.000 3.32 0.00 39.96 4.09
1532 1774 4.934989 GGCGTTCCCCAAGAGTAG 57.065 61.111 0.00 0.00 0.00 2.57
1600 1842 1.494721 ACAAGGACCCTGAGAAGCAAA 59.505 47.619 0.00 0.00 0.00 3.68
1980 2230 7.901322 AGGGAAGCTGATAATACCATCTATGTA 59.099 37.037 0.00 0.00 0.00 2.29
2010 2260 1.382522 CTGGTGCGGTTCTTGCATAT 58.617 50.000 0.00 0.00 45.34 1.78
2071 2321 2.296471 ACGAACAAGAAGGATCGTGTCT 59.704 45.455 0.00 0.00 45.70 3.41
2085 2335 1.748403 TGTCTCAGACACTGTGGCC 59.252 57.895 10.66 0.00 37.67 5.36
2146 2396 5.440234 AGTACTCACATCCATACGTGATC 57.560 43.478 0.00 0.00 41.13 2.92
3234 3586 1.671328 GGAAGGCTCGGACTTAAATGC 59.329 52.381 0.00 0.00 26.99 3.56
3241 3593 1.562008 TCGGACTTAAATGCCATGGGA 59.438 47.619 15.13 12.25 0.00 4.37
3290 3642 5.010012 AGTCAAGTTTCACCATTCCATGTTC 59.990 40.000 0.00 0.00 0.00 3.18
3412 3764 4.202472 ACGGAAGAAAAGGGAACAGAAGAT 60.202 41.667 0.00 0.00 0.00 2.40
3413 3765 5.012768 ACGGAAGAAAAGGGAACAGAAGATA 59.987 40.000 0.00 0.00 0.00 1.98
3414 3766 5.938125 CGGAAGAAAAGGGAACAGAAGATAA 59.062 40.000 0.00 0.00 0.00 1.75
3415 3767 6.092807 CGGAAGAAAAGGGAACAGAAGATAAG 59.907 42.308 0.00 0.00 0.00 1.73
3416 3768 6.375736 GGAAGAAAAGGGAACAGAAGATAAGG 59.624 42.308 0.00 0.00 0.00 2.69
3417 3769 6.455690 AGAAAAGGGAACAGAAGATAAGGT 57.544 37.500 0.00 0.00 0.00 3.50
3418 3770 7.569599 AGAAAAGGGAACAGAAGATAAGGTA 57.430 36.000 0.00 0.00 0.00 3.08
3419 3771 7.985589 AGAAAAGGGAACAGAAGATAAGGTAA 58.014 34.615 0.00 0.00 0.00 2.85
3420 3772 7.883833 AGAAAAGGGAACAGAAGATAAGGTAAC 59.116 37.037 0.00 0.00 0.00 2.50
3421 3773 6.697641 AAGGGAACAGAAGATAAGGTAACA 57.302 37.500 0.00 0.00 41.41 2.41
3422 3774 6.301169 AGGGAACAGAAGATAAGGTAACAG 57.699 41.667 0.00 0.00 41.41 3.16
3423 3775 6.023603 AGGGAACAGAAGATAAGGTAACAGA 58.976 40.000 0.00 0.00 41.41 3.41
3424 3776 6.500751 AGGGAACAGAAGATAAGGTAACAGAA 59.499 38.462 0.00 0.00 41.41 3.02
3425 3777 6.819146 GGGAACAGAAGATAAGGTAACAGAAG 59.181 42.308 0.00 0.00 41.41 2.85
3426 3778 7.310485 GGGAACAGAAGATAAGGTAACAGAAGA 60.310 40.741 0.00 0.00 41.41 2.87
3559 3914 4.144297 ACAACAACAATGGACATACTGCT 58.856 39.130 0.00 0.00 0.00 4.24
3670 4025 5.479306 GTCATTGTCTTGCTACTTCCAGTA 58.521 41.667 0.00 0.00 0.00 2.74
3762 4117 1.822114 TACGCAGCAGGCAGTACCAA 61.822 55.000 0.00 0.00 45.17 3.67
4128 5645 1.818060 GCCAGCCATTTGTGTATGACA 59.182 47.619 0.00 0.00 0.00 3.58
4201 5719 4.351874 AAGTTGCTAGTGTGGAGCTTTA 57.648 40.909 0.00 0.00 40.76 1.85
4212 5730 2.413453 GTGGAGCTTTAGTTTCGAGCTG 59.587 50.000 1.33 0.00 46.08 4.24
4303 6301 9.743057 TTGTCTGTTTCATTGGTGTAAATAAAG 57.257 29.630 0.00 0.00 0.00 1.85
4493 6555 7.465900 TGGTATAAAGGGATCCTTGAAGAAT 57.534 36.000 12.58 0.00 43.92 2.40
4524 6814 3.838244 ACTGGCACTTAGTTGAACTGA 57.162 42.857 8.33 0.00 0.00 3.41
4546 6836 7.989741 ACTGACCTGATGAAATAGAATTACAGG 59.010 37.037 0.00 0.00 45.93 4.00
4570 6860 2.611473 GCAGCTTCTAGTGACTCTGCAA 60.611 50.000 15.64 0.00 42.40 4.08
4691 6985 7.391148 TTTAACTGATCTGGCCTTGATTTAC 57.609 36.000 3.32 0.00 0.00 2.01
4780 7074 6.362686 CCAATAACGATGGTGTAATTGATCG 58.637 40.000 10.48 0.00 42.66 3.69
4792 7086 9.825109 TGGTGTAATTGATCGTTATGAGAAATA 57.175 29.630 0.00 0.00 0.00 1.40
4851 7145 3.350833 ACCTCTGTCCATTCTTCAATGC 58.649 45.455 0.00 0.00 38.53 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.323725 CCCCAGGCTTGTATGCAACT 60.324 55.000 0.00 0.00 34.04 3.16
71 72 8.437575 TGTTTAGAGGTTTATCCCATTATCTCC 58.562 37.037 0.00 0.00 36.75 3.71
285 302 2.892425 CGCCGCAGTTCCATCTCC 60.892 66.667 0.00 0.00 0.00 3.71
299 316 0.948141 GATGCTGCTAGGATGACGCC 60.948 60.000 0.00 0.00 0.00 5.68
301 318 0.320247 GGGATGCTGCTAGGATGACG 60.320 60.000 0.00 0.00 0.00 4.35
310 327 0.112995 TGTTTGGAAGGGATGCTGCT 59.887 50.000 0.00 0.00 0.00 4.24
319 336 3.146104 AGACTCACCATGTTTGGAAGG 57.854 47.619 0.00 0.00 46.92 3.46
338 355 2.702478 TCTGGAGCATATGTGAGGGAAG 59.298 50.000 4.29 0.00 0.00 3.46
349 366 1.213678 AGCTGGCATTTCTGGAGCATA 59.786 47.619 0.00 0.00 31.80 3.14
350 367 0.033405 AGCTGGCATTTCTGGAGCAT 60.033 50.000 0.00 0.00 31.80 3.79
351 368 0.251474 AAGCTGGCATTTCTGGAGCA 60.251 50.000 0.00 0.00 31.80 4.26
357 374 1.969862 GGCACAAGCTGGCATTTCT 59.030 52.632 7.47 0.00 45.09 2.52
369 386 1.175347 TGGCGTAATGCTTGGCACAA 61.175 50.000 0.00 0.00 43.04 3.33
403 420 8.512138 TCATGATGCTGATGATTGAAATATGTC 58.488 33.333 0.00 0.00 0.00 3.06
414 431 5.438761 CAACATGTCATGATGCTGATGAT 57.561 39.130 19.77 0.00 32.53 2.45
482 499 7.743116 TTCCATGGTTACATAAGGAGACTAA 57.257 36.000 12.58 0.00 35.30 2.24
549 566 4.081917 GGAACCTTCATCGTCTTCTCTCTT 60.082 45.833 0.00 0.00 0.00 2.85
561 578 7.065923 GGAGTTAACTATGTTGGAACCTTCATC 59.934 40.741 8.42 0.00 0.00 2.92
573 590 6.909550 TGCCAATTTGGAGTTAACTATGTT 57.090 33.333 19.76 0.00 40.96 2.71
576 593 8.823220 AACTATGCCAATTTGGAGTTAACTAT 57.177 30.769 19.76 0.00 40.96 2.12
577 594 9.742144 TTAACTATGCCAATTTGGAGTTAACTA 57.258 29.630 23.76 12.03 38.41 2.24
581 598 7.617723 ACCATTAACTATGCCAATTTGGAGTTA 59.382 33.333 19.76 18.53 40.96 2.24
582 599 6.440328 ACCATTAACTATGCCAATTTGGAGTT 59.560 34.615 19.76 19.44 40.96 3.01
584 601 6.469782 ACCATTAACTATGCCAATTTGGAG 57.530 37.500 19.76 10.03 40.96 3.86
586 603 8.203485 ACATAACCATTAACTATGCCAATTTGG 58.797 33.333 11.27 11.27 41.55 3.28
591 608 8.855110 CCAATACATAACCATTAACTATGCCAA 58.145 33.333 0.00 0.00 32.60 4.52
592 609 7.040062 GCCAATACATAACCATTAACTATGCCA 60.040 37.037 0.00 0.00 32.60 4.92
593 610 7.176690 AGCCAATACATAACCATTAACTATGCC 59.823 37.037 0.00 0.00 32.60 4.40
594 611 8.110860 AGCCAATACATAACCATTAACTATGC 57.889 34.615 0.00 0.00 32.60 3.14
618 635 4.802876 GCTACCTTGCATTAGCTGTAAG 57.197 45.455 12.87 0.00 44.52 2.34
626 643 5.366482 TTCCATGTAGCTACCTTGCATTA 57.634 39.130 21.01 0.00 34.99 1.90
627 644 3.931907 TCCATGTAGCTACCTTGCATT 57.068 42.857 21.01 0.00 34.99 3.56
628 645 3.931907 TTCCATGTAGCTACCTTGCAT 57.068 42.857 21.01 4.73 34.99 3.96
629 646 3.931907 ATTCCATGTAGCTACCTTGCA 57.068 42.857 21.01 2.50 34.99 4.08
630 647 4.214332 GCTTATTCCATGTAGCTACCTTGC 59.786 45.833 21.01 8.48 0.00 4.01
631 648 5.368145 TGCTTATTCCATGTAGCTACCTTG 58.632 41.667 21.01 17.06 34.77 3.61
632 649 5.630415 TGCTTATTCCATGTAGCTACCTT 57.370 39.130 21.01 6.03 34.77 3.50
633 650 5.545723 AGATGCTTATTCCATGTAGCTACCT 59.454 40.000 21.01 8.72 34.77 3.08
635 652 5.872070 GGAGATGCTTATTCCATGTAGCTAC 59.128 44.000 17.30 17.30 34.77 3.58
637 654 4.263243 GGGAGATGCTTATTCCATGTAGCT 60.263 45.833 0.00 0.00 34.77 3.32
638 655 4.006319 GGGAGATGCTTATTCCATGTAGC 58.994 47.826 0.00 0.00 32.50 3.58
639 656 5.012458 TCTGGGAGATGCTTATTCCATGTAG 59.988 44.000 0.00 0.00 32.50 2.74
640 657 4.907269 TCTGGGAGATGCTTATTCCATGTA 59.093 41.667 0.00 0.00 32.50 2.29
642 659 4.325119 CTCTGGGAGATGCTTATTCCATG 58.675 47.826 0.00 0.00 32.50 3.66
643 660 3.244840 GCTCTGGGAGATGCTTATTCCAT 60.245 47.826 0.00 0.00 32.50 3.41
644 661 2.105477 GCTCTGGGAGATGCTTATTCCA 59.895 50.000 0.00 0.00 32.50 3.53
646 663 3.070734 TGAGCTCTGGGAGATGCTTATTC 59.929 47.826 16.19 0.00 31.90 1.75
648 665 2.687297 TGAGCTCTGGGAGATGCTTAT 58.313 47.619 16.19 0.00 31.90 1.73
649 666 2.165357 TGAGCTCTGGGAGATGCTTA 57.835 50.000 16.19 0.00 31.90 3.09
650 667 1.209990 CTTGAGCTCTGGGAGATGCTT 59.790 52.381 16.19 0.00 31.90 3.91
651 668 0.831966 CTTGAGCTCTGGGAGATGCT 59.168 55.000 16.19 0.00 33.53 3.79
652 669 0.540923 ACTTGAGCTCTGGGAGATGC 59.459 55.000 16.19 0.00 0.00 3.91
653 670 4.686191 AATACTTGAGCTCTGGGAGATG 57.314 45.455 16.19 0.00 0.00 2.90
654 671 5.710646 TCTAATACTTGAGCTCTGGGAGAT 58.289 41.667 16.19 0.00 0.00 2.75
655 672 5.130705 TCTAATACTTGAGCTCTGGGAGA 57.869 43.478 16.19 5.80 0.00 3.71
656 673 5.860941 TTCTAATACTTGAGCTCTGGGAG 57.139 43.478 16.19 9.93 0.00 4.30
657 674 6.620877 TTTTCTAATACTTGAGCTCTGGGA 57.379 37.500 16.19 4.53 0.00 4.37
658 675 7.872113 AATTTTCTAATACTTGAGCTCTGGG 57.128 36.000 16.19 7.39 0.00 4.45
676 693 9.760077 TCCGAACAGAGGAAGTATATAATTTTC 57.240 33.333 0.00 0.00 34.33 2.29
691 708 3.612860 CGACAACTAATTCCGAACAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
692 709 3.060895 GCGACAACTAATTCCGAACAGAG 59.939 47.826 0.00 0.00 0.00 3.35
693 710 2.991190 GCGACAACTAATTCCGAACAGA 59.009 45.455 0.00 0.00 0.00 3.41
694 711 2.993899 AGCGACAACTAATTCCGAACAG 59.006 45.455 0.00 0.00 0.00 3.16
695 712 2.991190 GAGCGACAACTAATTCCGAACA 59.009 45.455 0.00 0.00 0.00 3.18
696 713 2.991190 TGAGCGACAACTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
698 715 3.306917 TTGAGCGACAACTAATTCCGA 57.693 42.857 0.00 0.00 33.18 4.55
700 717 4.451096 TCAGTTTGAGCGACAACTAATTCC 59.549 41.667 0.00 0.00 38.29 3.01
701 718 5.591643 TCAGTTTGAGCGACAACTAATTC 57.408 39.130 0.00 0.00 38.29 2.17
703 720 4.997395 ACATCAGTTTGAGCGACAACTAAT 59.003 37.500 0.00 0.00 38.29 1.73
705 722 3.990092 ACATCAGTTTGAGCGACAACTA 58.010 40.909 0.00 0.00 38.29 2.24
707 724 4.627467 AGATACATCAGTTTGAGCGACAAC 59.373 41.667 0.00 0.00 38.29 3.32
708 725 4.820897 AGATACATCAGTTTGAGCGACAA 58.179 39.130 0.00 0.00 36.65 3.18
710 727 5.683743 GTCTAGATACATCAGTTTGAGCGAC 59.316 44.000 0.00 0.00 0.00 5.19
713 730 5.822278 TCGTCTAGATACATCAGTTTGAGC 58.178 41.667 0.00 0.00 0.00 4.26
714 731 8.184848 TCTTTCGTCTAGATACATCAGTTTGAG 58.815 37.037 0.00 0.00 0.00 3.02
715 732 8.051901 TCTTTCGTCTAGATACATCAGTTTGA 57.948 34.615 0.00 0.00 0.00 2.69
716 733 8.864069 ATCTTTCGTCTAGATACATCAGTTTG 57.136 34.615 0.00 0.00 30.74 2.93
717 734 9.522804 GAATCTTTCGTCTAGATACATCAGTTT 57.477 33.333 0.00 0.00 32.21 2.66
718 735 8.687242 TGAATCTTTCGTCTAGATACATCAGTT 58.313 33.333 0.00 0.00 32.21 3.16
719 736 8.226819 TGAATCTTTCGTCTAGATACATCAGT 57.773 34.615 0.00 0.00 32.21 3.41
720 737 9.689976 AATGAATCTTTCGTCTAGATACATCAG 57.310 33.333 0.00 0.00 32.21 2.90
722 739 9.684448 TCAATGAATCTTTCGTCTAGATACATC 57.316 33.333 0.00 0.00 32.21 3.06
724 741 9.468532 CATCAATGAATCTTTCGTCTAGATACA 57.531 33.333 0.00 0.00 32.21 2.29
725 742 8.431593 GCATCAATGAATCTTTCGTCTAGATAC 58.568 37.037 0.00 0.00 32.21 2.24
726 743 7.600375 GGCATCAATGAATCTTTCGTCTAGATA 59.400 37.037 0.00 0.00 32.21 1.98
727 744 6.426328 GGCATCAATGAATCTTTCGTCTAGAT 59.574 38.462 0.00 0.00 33.87 1.98
728 745 5.755375 GGCATCAATGAATCTTTCGTCTAGA 59.245 40.000 0.00 0.00 0.00 2.43
729 746 5.049818 GGGCATCAATGAATCTTTCGTCTAG 60.050 44.000 0.00 0.00 0.00 2.43
730 747 4.816385 GGGCATCAATGAATCTTTCGTCTA 59.184 41.667 0.00 0.00 0.00 2.59
731 748 3.629398 GGGCATCAATGAATCTTTCGTCT 59.371 43.478 0.00 0.00 0.00 4.18
732 749 3.546815 CGGGCATCAATGAATCTTTCGTC 60.547 47.826 0.00 0.00 0.00 4.20
733 750 2.355756 CGGGCATCAATGAATCTTTCGT 59.644 45.455 0.00 0.00 0.00 3.85
734 751 2.355756 ACGGGCATCAATGAATCTTTCG 59.644 45.455 0.00 0.00 0.00 3.46
737 754 4.949856 ACTTAACGGGCATCAATGAATCTT 59.050 37.500 0.00 0.00 0.00 2.40
739 756 4.900635 ACTTAACGGGCATCAATGAATC 57.099 40.909 0.00 0.00 0.00 2.52
768 974 2.714250 TCCCTTGTCTTTCCCAAGCTTA 59.286 45.455 0.00 0.00 38.36 3.09
794 1000 7.811236 TCGAGTCGAGTTGTCTTGTTTAAATAT 59.189 33.333 12.09 0.00 0.00 1.28
816 1022 3.375782 TCATGCCATGACTACATCGAG 57.624 47.619 2.53 0.00 34.15 4.04
817 1023 4.341366 AATCATGCCATGACTACATCGA 57.659 40.909 10.06 0.00 43.01 3.59
818 1024 4.092529 GCTAATCATGCCATGACTACATCG 59.907 45.833 10.06 0.00 43.01 3.84
819 1025 4.999311 TGCTAATCATGCCATGACTACATC 59.001 41.667 10.06 0.00 43.01 3.06
820 1026 4.976864 TGCTAATCATGCCATGACTACAT 58.023 39.130 10.06 0.00 43.01 2.29
849 1055 2.184088 TGATGGTTCCCCGGAATCTA 57.816 50.000 0.73 0.00 36.30 1.98
863 1069 0.461339 GCTTTGGCTTGGCATGATGG 60.461 55.000 4.32 0.00 35.22 3.51
902 1108 4.621886 GCTCTTAGTTATATAGCCGTGTGC 59.378 45.833 0.00 0.00 41.71 4.57
1003 1209 1.139256 TGCTACTTGGTTGTTGGACGA 59.861 47.619 0.00 0.00 0.00 4.20
1179 1388 1.750930 CTGTGTGTCCTGCCAGACT 59.249 57.895 0.00 0.00 37.66 3.24
1218 1427 1.945354 GCGTGTCTGGAAGGATCGGA 61.945 60.000 0.00 0.00 0.00 4.55
1230 1439 2.649034 CGGTGGTAGTGCGTGTCT 59.351 61.111 0.00 0.00 0.00 3.41
1257 1466 2.163815 AGTCGCGTTGCAGTAGTAGAAT 59.836 45.455 5.77 0.00 0.00 2.40
1290 1499 1.001641 GAGGCAGGCCACAAGTGAT 60.002 57.895 13.63 0.00 38.92 3.06
1532 1774 0.107752 CTCAGGAGCCTTGCCTTCTC 60.108 60.000 0.00 0.00 32.12 2.87
1600 1842 5.183904 GCTTGTTTACATCAGGATCCTTGTT 59.816 40.000 21.41 8.51 0.00 2.83
1980 2230 1.455383 CCGCACCAGCCAGAAAAACT 61.455 55.000 0.00 0.00 37.52 2.66
2010 2260 9.533831 TCAGTGATAGCCATCTGTAGAAATATA 57.466 33.333 0.00 0.00 31.93 0.86
2071 2321 3.625897 CCGGGCCACAGTGTCTGA 61.626 66.667 4.39 0.00 35.18 3.27
2085 2335 3.649277 CTTGTCCACGAGAGCCCGG 62.649 68.421 0.00 0.00 0.00 5.73
2095 2345 3.263425 TCCCAACTATCCTTCTTGTCCAC 59.737 47.826 0.00 0.00 0.00 4.02
2742 3046 1.199097 CGGGATCTTGGTTTTTGTCCG 59.801 52.381 0.00 0.00 0.00 4.79
3219 3553 1.334869 CCATGGCATTTAAGTCCGAGC 59.665 52.381 0.00 0.00 0.00 5.03
3234 3586 2.362889 GGGTTGGCACTCCCATGG 60.363 66.667 18.54 4.14 44.89 3.66
3241 3593 4.982701 GCAGCAGGGGTTGGCACT 62.983 66.667 0.00 0.00 0.00 4.40
3319 3671 0.691078 GCCCAGAGGACCCATCTACA 60.691 60.000 0.00 0.00 33.47 2.74
3412 3764 7.676893 TCTGTTCCCTTATCTTCTGTTACCTTA 59.323 37.037 0.00 0.00 0.00 2.69
3413 3765 6.500751 TCTGTTCCCTTATCTTCTGTTACCTT 59.499 38.462 0.00 0.00 0.00 3.50
3414 3766 6.023603 TCTGTTCCCTTATCTTCTGTTACCT 58.976 40.000 0.00 0.00 0.00 3.08
3415 3767 6.295719 TCTGTTCCCTTATCTTCTGTTACC 57.704 41.667 0.00 0.00 0.00 2.85
3416 3768 7.612677 TCTTCTGTTCCCTTATCTTCTGTTAC 58.387 38.462 0.00 0.00 0.00 2.50
3417 3769 7.792364 TCTTCTGTTCCCTTATCTTCTGTTA 57.208 36.000 0.00 0.00 0.00 2.41
3418 3770 6.688073 TCTTCTGTTCCCTTATCTTCTGTT 57.312 37.500 0.00 0.00 0.00 3.16
3419 3771 6.688073 TTCTTCTGTTCCCTTATCTTCTGT 57.312 37.500 0.00 0.00 0.00 3.41
3420 3772 7.120432 CCTTTTCTTCTGTTCCCTTATCTTCTG 59.880 40.741 0.00 0.00 0.00 3.02
3421 3773 7.017651 TCCTTTTCTTCTGTTCCCTTATCTTCT 59.982 37.037 0.00 0.00 0.00 2.85
3422 3774 7.119992 GTCCTTTTCTTCTGTTCCCTTATCTTC 59.880 40.741 0.00 0.00 0.00 2.87
3423 3775 6.943146 GTCCTTTTCTTCTGTTCCCTTATCTT 59.057 38.462 0.00 0.00 0.00 2.40
3424 3776 6.477253 GTCCTTTTCTTCTGTTCCCTTATCT 58.523 40.000 0.00 0.00 0.00 1.98
3425 3777 5.648526 GGTCCTTTTCTTCTGTTCCCTTATC 59.351 44.000 0.00 0.00 0.00 1.75
3426 3778 5.313506 AGGTCCTTTTCTTCTGTTCCCTTAT 59.686 40.000 0.00 0.00 0.00 1.73
3559 3914 1.634973 TCATGGAGGATTGAGTTGCCA 59.365 47.619 0.00 0.00 0.00 4.92
3670 4025 2.166254 CAGTGGGAACTTGTGCTTGTTT 59.834 45.455 0.00 0.00 0.00 2.83
3762 4117 0.326048 CCTGGACATCTCCCACTCCT 60.326 60.000 0.00 0.00 35.34 3.69
4182 5700 3.665190 ACTAAAGCTCCACACTAGCAAC 58.335 45.455 0.00 0.00 42.62 4.17
4201 5719 1.279271 AGGCCATAACAGCTCGAAACT 59.721 47.619 5.01 0.00 0.00 2.66
4366 6364 9.793259 TGTCCAACTAAGAGATGAACTTTAATT 57.207 29.630 0.00 0.00 0.00 1.40
4390 6448 8.339344 TGATGTTTGATGAGTGATTATGTTGT 57.661 30.769 0.00 0.00 0.00 3.32
4493 6555 7.500892 TCAACTAAGTGCCAGTTCTTAATTTCA 59.499 33.333 0.00 0.00 33.99 2.69
4524 6814 7.512992 CCTCCTGTAATTCTATTTCATCAGGT 58.487 38.462 0.00 0.00 41.07 4.00
4546 6836 2.099405 AGAGTCACTAGAAGCTGCCTC 58.901 52.381 0.00 0.00 0.00 4.70
4624 6918 4.039730 ACAGGTCTGCGCATTATATCTCTT 59.960 41.667 12.24 0.00 0.00 2.85
4691 6985 3.754850 TCTCAACTGCAAATGGACATGAG 59.245 43.478 0.00 6.10 35.53 2.90
4744 7038 8.604035 CACCATCGTTATTGGCTTATCATATAC 58.396 37.037 0.00 0.00 37.81 1.47
4763 7057 6.640907 TCTCATAACGATCAATTACACCATCG 59.359 38.462 0.00 0.00 43.06 3.84
4805 7099 5.894298 AGAACTAATCATGATAGGTGGCA 57.106 39.130 9.04 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.