AutoCloner

Multiple sequence alignment - TraesCS7B01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G123700	chr7B	100.000	5465	0	0	1	5465	144814556	144809092	0.000000e+00	10093.0
1	TraesCS7B01G123700	chr7B	93.815	2102	111	7	2621	4718	145053557	145051471	0.000000e+00	3144.0
2	TraesCS7B01G123700	chr7B	86.731	2163	197	46	465	2598	145055867	145053766	0.000000e+00	2322.0
3	TraesCS7B01G123700	chr7B	92.794	1471	98	4	1129	2598	144736695	144735232	0.000000e+00	2122.0
4	TraesCS7B01G123700	chr7B	93.030	1320	89	1	2625	3941	144734956	144733637	0.000000e+00	1925.0
5	TraesCS7B01G123700	chr7B	93.997	733	38	1	3917	4649	144733613	144732887	0.000000e+00	1105.0
6	TraesCS7B01G123700	chr7B	77.360	1462	280	42	2872	4306	145028609	145027172	0.000000e+00	819.0
7	TraesCS7B01G123700	chr7B	84.669	287	20	7	4859	5128	145051390	145051111	1.170000e-66	265.0
8	TraesCS7B01G123700	chr7B	79.037	353	33	17	13	363	144737583	144737270	2.580000e-48	204.0
9	TraesCS7B01G123700	chr7B	80.738	244	29	10	124	365	145056109	145055882	2.020000e-39	174.0
10	TraesCS7B01G123700	chr7D	96.731	5048	141	9	1	5027	178941863	178936819	0.000000e+00	8386.0
11	TraesCS7B01G123700	chr7D	92.653	1470	97	6	1129	2596	178861918	178860458	0.000000e+00	2106.0
12	TraesCS7B01G123700	chr7D	94.778	1264	53	3	2678	3941	178860205	178858955	0.000000e+00	1956.0
13	TraesCS7B01G123700	chr7D	90.447	1476	117	20	1144	2605	179123587	179122122	0.000000e+00	1923.0
14	TraesCS7B01G123700	chr7D	95.225	733	35	0	3917	4649	178858931	178858199	0.000000e+00	1160.0
15	TraesCS7B01G123700	chr7D	77.113	1455	296	31	2872	4306	178990013	178988576	0.000000e+00	808.0
16	TraesCS7B01G123700	chr7D	86.994	469	42	11	4858	5313	178857991	178857529	1.360000e-140	510.0
17	TraesCS7B01G123700	chr7D	90.657	396	14	8	5071	5465	178936810	178936437	6.320000e-139	505.0
18	TraesCS7B01G123700	chr7D	82.123	537	47	28	465	983	179124118	179123613	1.100000e-111	414.0
19	TraesCS7B01G123700	chr7D	81.644	365	27	16	1	363	178862834	178862508	3.250000e-67	267.0
20	TraesCS7B01G123700	chr7D	92.199	141	11	0	2621	2761	179121923	179121783	3.340000e-47	200.0
21	TraesCS7B01G123700	chr7D	90.291	103	6	4	124	224	179124419	179124319	1.240000e-26	132.0
22	TraesCS7B01G123700	chr7A	97.025	4302	115	8	695	4985	183483716	183479417	0.000000e+00	7223.0
23	TraesCS7B01G123700	chr7A	94.614	2098	104	3	2621	4718	183654350	183652262	0.000000e+00	3240.0
24	TraesCS7B01G123700	chr7A	92.371	1468	103	5	1129	2596	183308990	183307532	0.000000e+00	2082.0
25	TraesCS7B01G123700	chr7A	94.777	1321	69	0	2621	3941	183307252	183305932	0.000000e+00	2058.0
26	TraesCS7B01G123700	chr7A	92.779	1274	74	6	1161	2431	182856895	182855637	0.000000e+00	1827.0
27	TraesCS7B01G123700	chr7A	89.419	1446	110	26	1161	2598	183655969	183654559	0.000000e+00	1783.0
28	TraesCS7B01G123700	chr7A	92.579	1078	70	6	3917	4985	183305908	183304832	0.000000e+00	1539.0
29	TraesCS7B01G123700	chr7A	94.635	727	36	3	1	726	183484445	183483721	0.000000e+00	1123.0
30	TraesCS7B01G123700	chr7A	90.509	432	29	6	5036	5465	183405555	183405134	1.330000e-155	560.0
31	TraesCS7B01G123700	chr7A	82.353	561	51	22	465	1007	183656530	183656000	1.400000e-120	444.0
32	TraesCS7B01G123700	chr7A	94.595	259	14	0	2868	3126	182855638	182855380	8.530000e-108	401.0
33	TraesCS7B01G123700	chr7A	85.864	382	33	10	4858	5227	183652183	183651811	2.390000e-103	387.0
34	TraesCS7B01G123700	chr7A	84.943	352	50	3	751	1101	182857273	182856924	2.420000e-93	353.0
35	TraesCS7B01G123700	chr7A	81.644	365	27	16	1	363	183309906	183309580	3.250000e-67	267.0
36	TraesCS7B01G123700	chr7A	84.328	268	27	8	5207	5464	183304589	183304327	1.180000e-61	248.0
37	TraesCS7B01G123700	chr7A	91.515	165	11	3	4987	5148	183304750	183304586	1.980000e-54	224.0
38	TraesCS7B01G123700	chr7A	83.663	202	18	9	124	323	183656885	183656697	5.630000e-40	176.0
39	TraesCS7B01G123700	chr7A	94.643	56	3	0	7	62	182858376	182858321	2.710000e-13	87.9
40	TraesCS7B01G123700	chr7A	97.436	39	1	0	5011	5049	183479418	183479380	3.530000e-07	67.6
41	TraesCS7B01G123700	chr5D	90.566	53	5	0	367	419	261391157	261391105	2.730000e-08	71.3
42	TraesCS7B01G123700	chr5A	88.679	53	6	0	367	419	347011311	347011259	1.270000e-06	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G123700	chr7B	144809092	144814556	5464	True	10093.000000	10093	100.000000	1	5465	1	chr7B.!!$R1	5464
1	TraesCS7B01G123700	chr7B	145051111	145056109	4998	True	1476.250000	3144	86.488250	124	5128	4	chr7B.!!$R4	5004
2	TraesCS7B01G123700	chr7B	144732887	144737583	4696	True	1339.000000	2122	89.714500	13	4649	4	chr7B.!!$R3	4636
3	TraesCS7B01G123700	chr7B	145027172	145028609	1437	True	819.000000	819	77.360000	2872	4306	1	chr7B.!!$R2	1434
4	TraesCS7B01G123700	chr7D	178936437	178941863	5426	True	4445.500000	8386	93.694000	1	5465	2	chr7D.!!$R3	5464
5	TraesCS7B01G123700	chr7D	178857529	178862834	5305	True	1199.800000	2106	90.258800	1	5313	5	chr7D.!!$R2	5312
6	TraesCS7B01G123700	chr7D	178988576	178990013	1437	True	808.000000	808	77.113000	2872	4306	1	chr7D.!!$R1	1434
7	TraesCS7B01G123700	chr7D	179121783	179124419	2636	True	667.250000	1923	88.765000	124	2761	4	chr7D.!!$R4	2637
8	TraesCS7B01G123700	chr7A	183479380	183484445	5065	True	2804.533333	7223	96.365333	1	5049	3	chr7A.!!$R4	5048
9	TraesCS7B01G123700	chr7A	183651811	183656885	5074	True	1206.000000	3240	87.182600	124	5227	5	chr7A.!!$R5	5103
10	TraesCS7B01G123700	chr7A	183304327	183309906	5579	True	1069.666667	2082	89.535667	1	5464	6	chr7A.!!$R3	5463
11	TraesCS7B01G123700	chr7A	182855380	182858376	2996	True	667.225000	1827	91.740000	7	3126	4	chr7A.!!$R2	3119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
22	23	2.460918	GCTGTGATCATTGCAATGCTC	58.539	47.619	30.57	29.3	36.36	4.26	F
1193	2249	0.036010	CCTGACCACGAATCCAGCTT	60.036	55.000	0.00	0.0	0.00	3.74	F
3027	4348	2.499205	GACACCCATCATCGCCGA	59.501	61.111	0.00	0.0	0.00	5.54	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1542	2599	0.322277	ATGACTTGAGTGCCCTGCAG	60.322	55.0	6.78	6.78	40.08	4.41	R
3063	4384	1.381522	TCATGACAATGGATGCCACG	58.618	50.0	0.00	0.00	35.80	4.94	R
4568	5958	0.532862	ACACCGGTGCTCAAGTCAAG	60.533	55.0	34.26	6.55	0.00	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	2.460918	GCTGTGATCATTGCAATGCTC	58.539	47.619	30.57	29.30	36.36	4.26
88	394	4.142816	GCTGTTAGGCTTTGATGTGTGTAG	60.143	45.833	0.00	0.00	0.00	2.74
110	416	3.571401	GCTTGCCACTGCCAATAATCTAT	59.429	43.478	0.00	0.00	36.33	1.98
112	418	4.436113	TGCCACTGCCAATAATCTATCA	57.564	40.909	0.00	0.00	36.33	2.15
343	1277	6.410540	TGTTAAATGGGAAGCACAAAAACTT	58.589	32.000	0.00	0.00	0.00	2.66
378	1312	8.808092	GCATAATCATTAACTAGTACTCCCTCT	58.192	37.037	0.00	0.00	0.00	3.69
382	1316	9.440761	AATCATTAACTAGTACTCCCTCTGATT	57.559	33.333	0.00	6.21	0.00	2.57
384	1318	8.059461	TCATTAACTAGTACTCCCTCTGATTGA	58.941	37.037	0.00	0.00	0.00	2.57
419	1354	5.277828	CGCAGCTTTGAACTAAGGTTACTTT	60.278	40.000	0.00	0.00	38.14	2.66
436	1371	7.023197	GTTACTTTAACCTCAGTTCAAAGCA	57.977	36.000	0.00	0.00	37.42	3.91
498	1433	8.913487	ATGCTCAAACATGAACATATCTATGA	57.087	30.769	0.00	0.00	37.15	2.15
810	1811	5.122512	TCTTTGTGTTGTTTTCGTTTGGA	57.877	34.783	0.00	0.00	0.00	3.53
1178	2234	5.955355	CCAACAGAAATTTATTACCCCCTGA	59.045	40.000	6.33	0.00	0.00	3.86
1182	2238	5.359860	CAGAAATTTATTACCCCCTGACCAC	59.640	44.000	0.00	0.00	0.00	4.16
1193	2249	0.036010	CCTGACCACGAATCCAGCTT	60.036	55.000	0.00	0.00	0.00	3.74
1503	2560	6.642131	ACGCAATGCAATTAACCATGATATTC	59.358	34.615	5.91	0.00	32.46	1.75
1542	2599	2.718107	GCTTATGCTGCCGGAAGC	59.282	61.111	28.96	28.96	43.82	3.86
1788	2848	6.747280	CGCTTGTAATTTTTGCTGCTACTATT	59.253	34.615	0.00	0.00	0.00	1.73
2551	3611	7.120579	AGCAATCAACAAATATCGAGGTTGTTA	59.879	33.333	18.13	10.71	42.13	2.41
2777	4092	5.346181	AACCCTAGTACTGAGATTCTTGC	57.654	43.478	5.39	0.00	0.00	4.01
2833	4154	7.035612	TGTACATACTGACAGCAATCAAGTAG	58.964	38.462	1.25	0.00	0.00	2.57
2838	4159	2.813754	TGACAGCAATCAAGTAGCCAAC	59.186	45.455	0.00	0.00	0.00	3.77
2980	4301	6.323739	TGGCTTTTGGTCAAGAAGTAAAGATT	59.676	34.615	0.00	0.00	0.00	2.40
3027	4348	2.499205	GACACCCATCATCGCCGA	59.501	61.111	0.00	0.00	0.00	5.54
3063	4384	4.060900	TCTATCTCAATGCAATCGCCTTC	58.939	43.478	0.00	0.00	37.32	3.46
3093	4414	4.768448	TCCATTGTCATGATCACTTTGCTT	59.232	37.500	0.00	0.00	31.07	3.91
3509	4842	1.077828	AGGAGGTGTCTGGTCTGATGA	59.922	52.381	0.00	0.00	0.00	2.92
3510	4843	1.205893	GGAGGTGTCTGGTCTGATGAC	59.794	57.143	0.00	0.00	42.22	3.06
3511	4844	1.895798	GAGGTGTCTGGTCTGATGACA	59.104	52.381	6.90	6.90	44.61	3.58
3512	4845	2.300152	GAGGTGTCTGGTCTGATGACAA	59.700	50.000	10.90	0.00	44.61	3.18
3513	4846	2.301296	AGGTGTCTGGTCTGATGACAAG	59.699	50.000	10.90	0.00	43.85	3.16
3514	4847	2.613977	GGTGTCTGGTCTGATGACAAGG	60.614	54.545	10.90	0.00	42.96	3.61
3515	4848	2.300152	GTGTCTGGTCTGATGACAAGGA	59.700	50.000	10.90	0.00	42.96	3.36
3516	4849	3.055530	GTGTCTGGTCTGATGACAAGGAT	60.056	47.826	10.90	0.00	42.96	3.24
3517	4850	3.055602	TGTCTGGTCTGATGACAAGGATG	60.056	47.826	8.07	0.00	42.96	3.51
3821	5157	5.862845	TCTGATTCAAGTTCTGCTCTCTTT	58.137	37.500	0.00	0.00	0.00	2.52
3828	5164	3.072944	AGTTCTGCTCTCTTTGATGCAC	58.927	45.455	0.00	0.00	0.00	4.57
3904	5243	0.684535	TCATGCAGAGGGTGAACGAA	59.315	50.000	0.00	0.00	0.00	3.85
3915	5302	3.775316	AGGGTGAACGAATAATCACTCCT	59.225	43.478	2.34	6.24	46.10	3.69
3928	5315	0.617413	CACTCCTGTGAGGCCAGAAT	59.383	55.000	5.01	0.00	46.55	2.40
4053	5440	2.237143	TGGTGGATTCTGGTCTGATGAC	59.763	50.000	0.00	0.00	42.22	3.06
4261	5651	2.818432	CTGGCTCTCATGACAGCTTTTT	59.182	45.455	20.46	0.00	35.82	1.94
4306	5696	8.768501	ATTGAGGACTTCAGTGTATGTCTATA	57.231	34.615	10.75	0.00	37.07	1.31
4390	5780	5.118990	CAAAATATCGGAAGGCAAGAGAGA	58.881	41.667	0.00	0.00	0.00	3.10
4451	5841	2.124320	AGCAAACACACCGGCACT	60.124	55.556	0.00	0.00	0.00	4.40
4479	5869	4.766404	AGTTTGATGCTCCCTTTTTACG	57.234	40.909	0.00	0.00	0.00	3.18
4481	5871	5.010282	AGTTTGATGCTCCCTTTTTACGAT	58.990	37.500	0.00	0.00	0.00	3.73
4568	5958	6.441274	TCAGCATTTTTCTTCATGTTCAGAC	58.559	36.000	0.00	0.00	0.00	3.51
4578	5968	5.987953	TCTTCATGTTCAGACTTGACTTGAG	59.012	40.000	0.00	0.00	39.01	3.02
4677	6068	2.717580	TATCGGGTACATCGTCATGC	57.282	50.000	7.54	0.00	32.57	4.06
4683	6074	2.288666	GGTACATCGTCATGCAATGGT	58.711	47.619	0.00	0.00	46.73	3.55
4836	6237	3.620427	TTGGAGCTTTATTCCGCTACA	57.380	42.857	0.00	0.00	44.92	2.74
4985	6424	6.220930	TGACTACTAGGCTTGTTTTGTACTG	58.779	40.000	6.96	0.00	0.00	2.74
5055	6593	4.277921	GGAGTAGTAGTACATACTGGCACC	59.722	50.000	10.33	8.64	44.69	5.01
5064	6602	1.926426	ATACTGGCACCCCAAGGCTC	61.926	60.000	0.00	0.00	41.58	4.70
5069	6607	2.357836	CACCCCAAGGCTCTGCAT	59.642	61.111	0.00	0.00	36.11	3.96
5100	6638	8.556213	TGTAACATTATGAAGTAACCCTTGTC	57.444	34.615	0.00	0.00	32.03	3.18
5117	6656	8.575649	ACCCTTGTCTATTTAAAATGTACTGG	57.424	34.615	0.00	0.00	0.00	4.00
5194	6735	6.001460	CCGGGATTTGTATTGTATACATGGT	58.999	40.000	6.36	0.00	0.00	3.55
5195	6736	6.072728	CCGGGATTTGTATTGTATACATGGTG	60.073	42.308	6.36	0.00	0.00	4.17
5196	6737	6.485313	CGGGATTTGTATTGTATACATGGTGT	59.515	38.462	6.36	0.00	0.00	4.16
5222	6763	0.963962	CTGCCAATGTTGTGGAAGCT	59.036	50.000	0.00	0.00	37.52	3.74
5235	6776	5.186996	TGTGGAAGCTGTTCTTTTGATTC	57.813	39.130	0.00	0.00	34.56	2.52
5302	6843	6.208988	TCCTGTGTTGATATCTACTGTGAC	57.791	41.667	16.53	8.24	0.00	3.67
5351	6898	8.739972	AGTTATTGAGAACACATGGTTATTTCC	58.260	33.333	0.00	0.00	40.63	3.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
9	10	1.407618	GCATGGAGAGCATTGCAATGA	59.592	47.619	37.36	19.24	38.70	2.57
22	23	7.227156	AGTAAAAGATTATACCTGGCATGGAG	58.773	38.462	9.53	0.00	0.00	3.86
323	1144	7.228507	GGAAATAAGTTTTTGTGCTTCCCATTT	59.771	33.333	0.00	0.00	0.00	2.32
332	1266	5.982465	TGCTTGGAAATAAGTTTTTGTGC	57.018	34.783	0.00	0.00	0.00	4.57
419	1354	2.143122	CGCTGCTTTGAACTGAGGTTA	58.857	47.619	0.00	0.00	35.58	2.85
425	1360	2.127118	CGCCGCTGCTTTGAACTG	60.127	61.111	0.00	0.00	34.43	3.16
453	1388	4.277423	GCATAGAGTTCTACTCCCTCTGAC	59.723	50.000	3.33	0.00	46.18	3.51
648	1598	0.035458	CTCCAGAAAGGTGTCCGCTT	59.965	55.000	0.00	0.00	39.02	4.68
652	1602	2.635427	AGACTTCTCCAGAAAGGTGTCC	59.365	50.000	3.87	0.00	39.02	4.02
653	1603	5.669164	ATAGACTTCTCCAGAAAGGTGTC	57.331	43.478	0.00	0.00	39.02	3.67
738	1726	4.402056	AGACCCTACAATGATAACCACG	57.598	45.455	0.00	0.00	0.00	4.94
1178	2234	0.674895	GCTGAAGCTGGATTCGTGGT	60.675	55.000	0.00	0.00	38.21	4.16
1182	2238	1.159285	TGTTGCTGAAGCTGGATTCG	58.841	50.000	3.61	0.00	42.66	3.34
1193	2249	5.047590	AGCTCAAAATCATCATTGTTGCTGA	60.048	36.000	0.00	0.00	36.71	4.26
1480	2537	6.862608	TCGAATATCATGGTTAATTGCATTGC	59.137	34.615	0.46	0.46	0.00	3.56
1503	2560	0.531532	CCAGCAGGCTGAATAGGTCG	60.532	60.000	20.86	0.00	46.30	4.79
1542	2599	0.322277	ATGACTTGAGTGCCCTGCAG	60.322	55.000	6.78	6.78	40.08	4.41
1788	2848	5.376625	GGATTCAATCCTGCTTGGTATGTA	58.623	41.667	9.43	0.00	46.19	2.29
2349	3409	4.385310	GGGGTATTATCTTCTGCAGGTGTT	60.385	45.833	15.13	4.93	0.00	3.32
2551	3611	2.841044	ACACTCCGGGTTGGACGT	60.841	61.111	0.00	0.00	43.74	4.34
2599	3659	4.013728	ACATCTGTAGACTGACACTCCTC	58.986	47.826	0.00	0.00	0.00	3.71
2600	3660	4.040936	ACATCTGTAGACTGACACTCCT	57.959	45.455	0.00	0.00	0.00	3.69
2651	3966	1.472878	TGTCATGACTAGTGTCTCCGC	59.527	52.381	25.55	0.00	43.29	5.54
2777	4092	2.501316	TGTGTAGGATGGTCATCACTGG	59.499	50.000	12.33	0.00	39.54	4.00
2833	4154	2.288948	TGTCATCAGCATTTTGGTTGGC	60.289	45.455	0.00	0.00	0.00	4.52
2838	4159	4.359971	TCGAATGTCATCAGCATTTTGG	57.640	40.909	0.00	0.00	36.77	3.28
2980	4301	2.410939	GCGATCAGCAGCTGAATGATA	58.589	47.619	28.78	5.36	44.04	2.15
3027	4348	8.082852	GCATTGAGATAGAAGAATGCAATGAAT	58.917	33.333	14.59	0.00	46.49	2.57
3063	4384	1.381522	TCATGACAATGGATGCCACG	58.618	50.000	0.00	0.00	35.80	4.94
3093	4414	2.548057	GTCGCTCACCATCTTGTTCAAA	59.452	45.455	0.00	0.00	0.00	2.69
3336	4657	4.229876	GCACTGAGCAAAAATGACTAACC	58.770	43.478	0.00	0.00	44.79	2.85
3509	4842	1.303317	GTTCCCGTGGCATCCTTGT	60.303	57.895	0.00	0.00	0.00	3.16
3510	4843	1.002134	AGTTCCCGTGGCATCCTTG	60.002	57.895	0.00	0.00	0.00	3.61
3511	4844	1.299976	GAGTTCCCGTGGCATCCTT	59.700	57.895	0.00	0.00	0.00	3.36
3512	4845	2.670148	GGAGTTCCCGTGGCATCCT	61.670	63.158	0.00	0.00	0.00	3.24
3513	4846	2.124695	GGAGTTCCCGTGGCATCC	60.125	66.667	0.00	0.00	0.00	3.51
3746	5079	5.907207	TGCTCAGATAGATGGACTGTTTAC	58.093	41.667	0.00	0.00	33.93	2.01
3789	5122	4.594920	AGAACTTGAATCAGAAGGGAGACA	59.405	41.667	0.00	0.00	0.00	3.41
3821	5157	1.079197	CCTAGTGTGCCGTGCATCA	60.079	57.895	1.90	0.75	41.91	3.07
3828	5164	0.537188	ATGGTCTTCCTAGTGTGCCG	59.463	55.000	0.00	0.00	34.23	5.69
3915	5302	1.980765	ACTGAAGATTCTGGCCTCACA	59.019	47.619	3.32	0.00	0.00	3.58
4053	5440	1.227380	GCCTGGTACATGGCTCTCG	60.227	63.158	17.70	0.00	44.95	4.04
4306	5696	1.959226	CAACGCCGCCAACTAGTGT	60.959	57.895	0.00	0.00	0.00	3.55
4451	5841	2.912956	AGGGAGCATCAAACTTCAGGTA	59.087	45.455	0.00	0.00	36.25	3.08
4568	5958	0.532862	ACACCGGTGCTCAAGTCAAG	60.533	55.000	34.26	6.55	0.00	3.02
4742	6133	9.995003	AAATAGTATGCAACCAATCTTGAAAAA	57.005	25.926	0.00	0.00	0.00	1.94
4836	6237	3.587506	AGCCTAATGTGGTACCAACTTCT	59.412	43.478	18.31	4.88	0.00	2.85
4949	6388	8.784043	CAAGCCTAGTAGTCAAACTTGTTTTAT	58.216	33.333	0.00	0.00	0.00	1.40
4968	6407	3.146066	CAGCCAGTACAAAACAAGCCTA	58.854	45.455	0.00	0.00	0.00	3.93
5055	6593	0.324091	AGGAAATGCAGAGCCTTGGG	60.324	55.000	0.00	0.00	0.00	4.12
5064	6602	8.246180	ACTTCATAATGTTACAAGGAAATGCAG	58.754	33.333	0.00	0.00	0.00	4.41
5069	6607	9.016438	GGGTTACTTCATAATGTTACAAGGAAA	57.984	33.333	0.00	0.00	0.00	3.13
5100	6638	8.723942	AGACAGCTCCAGTACATTTTAAATAG	57.276	34.615	0.00	0.00	0.00	1.73
5107	6645	8.023021	TCATATAAGACAGCTCCAGTACATTT	57.977	34.615	0.00	0.00	0.00	2.32
5109	6647	7.452813	TCATCATATAAGACAGCTCCAGTACAT	59.547	37.037	0.00	0.00	0.00	2.29
5143	6682	1.885887	CCTCCAGCGTTGATTTTTGGA	59.114	47.619	0.00	0.00	36.55	3.53
5194	6735	1.608109	CAACATTGGCAGTAGCACACA	59.392	47.619	0.00	0.00	44.61	3.72
5195	6736	1.608590	ACAACATTGGCAGTAGCACAC	59.391	47.619	0.00	0.00	44.61	3.82
5196	6737	1.608109	CACAACATTGGCAGTAGCACA	59.392	47.619	0.00	0.00	44.61	4.57
5222	6763	8.918202	AGGTATGTAACTGAATCAAAAGAACA	57.082	30.769	0.00	0.00	0.00	3.18
5235	6776	6.316140	TGCATAAAAGCAGAGGTATGTAACTG	59.684	38.462	0.00	0.00	40.11	3.16
5302	6843	1.315257	CGCCCTGGGAATGTTCCTTG	61.315	60.000	19.27	5.04	46.72	3.61
5319	6866	3.064207	TGTGTTCTCAATAACTCCACGC	58.936	45.455	0.00	0.00	0.00	5.34
5332	6879	5.335661	GGTGTGGAAATAACCATGTGTTCTC	60.336	44.000	3.25	1.09	42.17	2.87
5351	6898	6.176975	TCTATGTTAGCGAAAATTGGTGTG	57.823	37.500	0.00	0.00	0.00	3.82

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.