AutoCloner

Multiple sequence alignment - TraesCS7B01G123200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G123200	chr7B	100.000	2348	0	0	1	2348	144657191	144659538	0.000000e+00	4337
1	TraesCS7B01G123200	chr7D	91.466	914	58	13	1440	2348	178606103	178607001	0.000000e+00	1238
2	TraesCS7B01G123200	chr7D	92.824	641	25	10	785	1408	178605467	178606103	0.000000e+00	909
3	TraesCS7B01G123200	chr7D	85.227	704	64	12	54	736	70817260	70816576	0.000000e+00	688
4	TraesCS7B01G123200	chr7A	92.013	889	50	11	1469	2348	182613212	182614088	0.000000e+00	1229
5	TraesCS7B01G123200	chr7A	92.219	694	29	9	784	1471	182612492	182613166	0.000000e+00	959
6	TraesCS7B01G123200	chr2D	86.950	705	68	8	53	735	62019592	62018890	0.000000e+00	771
7	TraesCS7B01G123200	chr2D	86.241	705	70	11	53	733	576275816	576275115	0.000000e+00	739
8	TraesCS7B01G123200	chr2D	83.562	730	87	12	35	735	455935224	455935949	0.000000e+00	652
9	TraesCS7B01G123200	chrUn	86.344	703	71	9	53	733	127126009	127126708	0.000000e+00	743
10	TraesCS7B01G123200	chr5D	86.119	706	72	9	53	735	352819539	352818837	0.000000e+00	737
11	TraesCS7B01G123200	chr5D	85.393	712	72	8	53	733	457022643	457023353	0.000000e+00	710
12	TraesCS7B01G123200	chr3D	85.694	706	80	6	53	738	296158739	296158035	0.000000e+00	725
13	TraesCS7B01G123200	chr3D	85.877	701	73	9	58	733	8938881	8939580	0.000000e+00	723
14	TraesCS7B01G123200	chr3D	84.736	701	86	11	53	732	113328996	113329696	0.000000e+00	682
15	TraesCS7B01G123200	chr3D	81.706	727	101	14	27	735	23168237	23167525	5.630000e-161	577
16	TraesCS7B01G123200	chr3D	85.787	394	31	9	363	733	335197654	335197263	6.080000e-106	394
17	TraesCS7B01G123200	chr3A	85.511	704	75	11	53	735	659827015	659826318	0.000000e+00	710
18	TraesCS7B01G123200	chr1A	85.127	706	77	11	53	735	30277035	30276335	0.000000e+00	697
19	TraesCS7B01G123200	chr1A	88.642	405	42	4	58	462	575403937	575403537	7.540000e-135	490
20	TraesCS7B01G123200	chr1D	84.986	706	76	10	53	733	479038546	479039246	0.000000e+00	689
21	TraesCS7B01G123200	chr1D	83.360	619	70	11	142	735	332689063	332688453	2.050000e-150	542
22	TraesCS7B01G123200	chr6D	83.495	721	80	18	35	733	47379964	47380667	9.150000e-179	636

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G123200	chr7B	144657191	144659538	2347	False	4337.0	4337	100.000	1	2348	1	chr7B.!!$F1	2347
1	TraesCS7B01G123200	chr7D	178605467	178607001	1534	False	1073.5	1238	92.145	785	2348	2	chr7D.!!$F1	1563
2	TraesCS7B01G123200	chr7D	70816576	70817260	684	True	688.0	688	85.227	54	736	1	chr7D.!!$R1	682
3	TraesCS7B01G123200	chr7A	182612492	182614088	1596	False	1094.0	1229	92.116	784	2348	2	chr7A.!!$F1	1564
4	TraesCS7B01G123200	chr2D	62018890	62019592	702	True	771.0	771	86.950	53	735	1	chr2D.!!$R1	682
5	TraesCS7B01G123200	chr2D	576275115	576275816	701	True	739.0	739	86.241	53	733	1	chr2D.!!$R2	680
6	TraesCS7B01G123200	chr2D	455935224	455935949	725	False	652.0	652	83.562	35	735	1	chr2D.!!$F1	700
7	TraesCS7B01G123200	chrUn	127126009	127126708	699	False	743.0	743	86.344	53	733	1	chrUn.!!$F1	680
8	TraesCS7B01G123200	chr5D	352818837	352819539	702	True	737.0	737	86.119	53	735	1	chr5D.!!$R1	682
9	TraesCS7B01G123200	chr5D	457022643	457023353	710	False	710.0	710	85.393	53	733	1	chr5D.!!$F1	680
10	TraesCS7B01G123200	chr3D	296158035	296158739	704	True	725.0	725	85.694	53	738	1	chr3D.!!$R2	685
11	TraesCS7B01G123200	chr3D	8938881	8939580	699	False	723.0	723	85.877	58	733	1	chr3D.!!$F1	675
12	TraesCS7B01G123200	chr3D	113328996	113329696	700	False	682.0	682	84.736	53	732	1	chr3D.!!$F2	679
13	TraesCS7B01G123200	chr3D	23167525	23168237	712	True	577.0	577	81.706	27	735	1	chr3D.!!$R1	708
14	TraesCS7B01G123200	chr3A	659826318	659827015	697	True	710.0	710	85.511	53	735	1	chr3A.!!$R1	682
15	TraesCS7B01G123200	chr1A	30276335	30277035	700	True	697.0	697	85.127	53	735	1	chr1A.!!$R1	682
16	TraesCS7B01G123200	chr1D	479038546	479039246	700	False	689.0	689	84.986	53	733	1	chr1D.!!$F1	680
17	TraesCS7B01G123200	chr1D	332688453	332689063	610	True	542.0	542	83.360	142	735	1	chr1D.!!$R1	593
18	TraesCS7B01G123200	chr6D	47379964	47380667	703	False	636.0	636	83.495	35	733	1	chr6D.!!$F1	698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
23	24	0.036388	GAGCCCAATTGGACGAGTCA	60.036	55.0	26.6	0.0	37.39	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1792	1955	0.177604	CTTCCTCGATTGCAGCTCCT	59.822	55.0	0.0	0.0	0.0	3.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	2.016961	CATCGAGCCCAATTGGACG	58.983	57.895	26.60	24.25	37.39	4.79
19	20	0.461870	CATCGAGCCCAATTGGACGA	60.462	55.000	28.56	28.56	44.16	4.20
20	21	0.179073	ATCGAGCCCAATTGGACGAG	60.179	55.000	29.25	18.72	43.63	4.18
21	22	1.079127	CGAGCCCAATTGGACGAGT	60.079	57.895	26.60	4.93	37.54	4.18
22	23	1.084370	CGAGCCCAATTGGACGAGTC	61.084	60.000	26.60	12.58	37.54	3.36
23	24	0.036388	GAGCCCAATTGGACGAGTCA	60.036	55.000	26.60	0.00	37.39	3.41
24	25	0.400213	AGCCCAATTGGACGAGTCAA	59.600	50.000	26.60	0.00	37.39	3.18
25	26	1.202879	AGCCCAATTGGACGAGTCAAA	60.203	47.619	26.60	0.20	37.39	2.69
32	33	0.038892	TGGACGAGTCAAAGGCGTAC	60.039	55.000	5.55	0.00	38.51	3.67
222	234	4.649310	TGGCACGTTGACGCGCTA	62.649	61.111	14.97	7.42	45.56	4.26
227	239	2.126618	CGTTGACGCGCTACCTCA	60.127	61.111	5.73	0.00	0.00	3.86
287	300	0.116342	GGGAAAAGGAATGGTGGGGT	59.884	55.000	0.00	0.00	0.00	4.95
316	335	2.243957	CGACTTGCTGTTGCCGACA	61.244	57.895	0.00	0.00	38.71	4.35
369	406	2.046700	CTAGGGTTTGCCGCCGAA	60.047	61.111	0.00	0.00	34.97	4.30
453	492	0.167251	CGCACGGTCGGCTTAAAAAT	59.833	50.000	0.00	0.00	0.00	1.82
455	495	1.198178	GCACGGTCGGCTTAAAAATGA	59.802	47.619	0.00	0.00	0.00	2.57
483	545	5.163195	ACCCGAGGTCATAAATTAAGCTGAT	60.163	40.000	0.00	0.00	0.00	2.90
678	749	1.546548	GGGCCTTCTCTTTTGTCTGCT	60.547	52.381	0.84	0.00	0.00	4.24
736	808	3.217626	CCCCATTGGAGTTGCTCTAATC	58.782	50.000	3.62	0.00	39.14	1.75
737	809	3.117738	CCCCATTGGAGTTGCTCTAATCT	60.118	47.826	3.62	0.00	39.14	2.40
739	811	4.952335	CCCATTGGAGTTGCTCTAATCTTT	59.048	41.667	3.62	0.00	39.14	2.52
740	812	6.122277	CCCATTGGAGTTGCTCTAATCTTTA	58.878	40.000	3.62	0.00	39.14	1.85
741	813	6.774656	CCCATTGGAGTTGCTCTAATCTTTAT	59.225	38.462	3.62	0.00	39.14	1.40
742	814	7.939039	CCCATTGGAGTTGCTCTAATCTTTATA	59.061	37.037	3.62	0.00	39.14	0.98
743	815	9.512588	CCATTGGAGTTGCTCTAATCTTTATAT	57.487	33.333	0.00	0.00	39.14	0.86
874	947	3.393800	CCACATTGAGACGAAACAGAGT	58.606	45.455	0.00	0.00	0.00	3.24
921	994	0.320374	TCCGTTGCTCCGTCTCATTT	59.680	50.000	0.00	0.00	0.00	2.32
978	1051	3.403558	GTCCTGTCAGGGAGGCCC	61.404	72.222	19.11	0.00	45.90	5.80
1096	1187	2.024825	GCACGTGGGAGATAGAGGAGT	61.025	57.143	18.88	0.00	0.00	3.85
1357	1464	5.779241	TCCTACCTCCTGAATCAAACATT	57.221	39.130	0.00	0.00	0.00	2.71
1358	1465	6.139679	TCCTACCTCCTGAATCAAACATTT	57.860	37.500	0.00	0.00	0.00	2.32
1359	1466	6.180472	TCCTACCTCCTGAATCAAACATTTC	58.820	40.000	0.00	0.00	0.00	2.17
1360	1467	6.012508	TCCTACCTCCTGAATCAAACATTTCT	60.013	38.462	0.00	0.00	0.00	2.52
1361	1468	6.317391	CCTACCTCCTGAATCAAACATTTCTC	59.683	42.308	0.00	0.00	0.00	2.87
1362	1469	5.012893	ACCTCCTGAATCAAACATTTCTCC	58.987	41.667	0.00	0.00	0.00	3.71
1363	1470	5.222213	ACCTCCTGAATCAAACATTTCTCCT	60.222	40.000	0.00	0.00	0.00	3.69
1364	1471	6.012508	ACCTCCTGAATCAAACATTTCTCCTA	60.013	38.462	0.00	0.00	0.00	2.94
1365	1472	7.059156	CCTCCTGAATCAAACATTTCTCCTAT	58.941	38.462	0.00	0.00	0.00	2.57
1366	1473	8.213679	CCTCCTGAATCAAACATTTCTCCTATA	58.786	37.037	0.00	0.00	0.00	1.31
1367	1474	9.618890	CTCCTGAATCAAACATTTCTCCTATAA	57.381	33.333	0.00	0.00	0.00	0.98
1398	1505	1.789464	CCTTAGCATTGCGAGATCGAC	59.211	52.381	6.39	0.00	43.02	4.20
1406	1513	0.945099	TGCGAGATCGACGAAGCTAT	59.055	50.000	16.78	0.00	43.02	2.97
1424	1531	7.868415	CGAAGCTATCTTATTACTAGTTGCCTT	59.132	37.037	0.00	0.00	31.48	4.35
1471	1578	6.032775	GTGACGATTTTGCAACATGAATGTAG	59.967	38.462	2.08	0.00	40.80	2.74
1478	1633	8.795786	TTTTGCAACATGAATGTAGAAGTTAC	57.204	30.769	0.00	0.00	40.80	2.50
1515	1670	3.985279	TCAAAGTGTCACGTTAAGATCGG	59.015	43.478	3.74	0.00	0.00	4.18
1556	1711	6.281405	ACAGTTGGTAAGAACACAGTAGAAG	58.719	40.000	0.00	0.00	0.00	2.85
1601	1763	0.469144	AATGGGTCCCAGCAACGTTT	60.469	50.000	17.70	0.28	36.75	3.60
1682	1844	2.587522	GTCTCAAGAGGGTTTTGGCTT	58.412	47.619	0.00	0.00	0.00	4.35
1792	1955	1.665599	GAAAAAGTCGGCCCGTCGA	60.666	57.895	1.63	0.00	36.76	4.20
1881	2044	1.261619	CAGACTCACACTTTTCGGTGC	59.738	52.381	0.00	0.00	40.52	5.01
1912	2075	2.301870	TGACTAGGTGGACATGGTGTTC	59.698	50.000	0.00	0.00	0.00	3.18
1920	2083	1.168714	GACATGGTGTTCTCCCAAGC	58.831	55.000	0.00	0.00	35.14	4.01
1924	2087	0.257328	TGGTGTTCTCCCAAGCACAA	59.743	50.000	0.00	0.00	30.26	3.33
1928	2091	3.763897	GGTGTTCTCCCAAGCACAATTAT	59.236	43.478	0.00	0.00	30.26	1.28
1929	2092	4.947388	GGTGTTCTCCCAAGCACAATTATA	59.053	41.667	0.00	0.00	30.26	0.98
1998	2161	8.020819	GGAGATTAGAGTTCTCATCTTACATCG	58.979	40.741	7.15	0.00	41.16	3.84
2002	2165	4.160439	AGAGTTCTCATCTTACATCGCCAA	59.840	41.667	2.64	0.00	0.00	4.52
2010	2173	6.321717	TCATCTTACATCGCCAATGTTTTTC	58.678	36.000	4.84	0.00	46.73	2.29
2011	2174	5.957842	TCTTACATCGCCAATGTTTTTCT	57.042	34.783	4.84	0.00	46.73	2.52
2019	2182	3.064545	CGCCAATGTTTTTCTTTTTGCCA	59.935	39.130	0.00	0.00	0.00	4.92
2037	2200	3.505680	TGCCAAAGTACATGTCCAATGAC	59.494	43.478	0.00	0.00	42.12	3.06
2074	2237	6.038050	GGAGAGAATGAATGCTTTTGGTAGAG	59.962	42.308	0.00	0.00	0.00	2.43
2192	2358	7.807977	TCAGATCAAACTTTTTAGCTCAAGT	57.192	32.000	0.00	0.00	34.58	3.16
2195	2361	8.993121	CAGATCAAACTTTTTAGCTCAAGTCTA	58.007	33.333	6.38	0.00	31.79	2.59
2214	2380	7.487822	AGTCTAATGGATATGTGGAGTATGG	57.512	40.000	0.00	0.00	0.00	2.74
2244	2410	2.375173	ACTTTAGGCGTTAGGTTCCG	57.625	50.000	0.00	0.00	0.00	4.30
2248	2414	4.478371	GGCGTTAGGTTCCGGGGG	62.478	72.222	0.00	0.00	0.00	5.40
2260	2426	3.702048	CGGGGGTGCCGAGAAGAA	61.702	66.667	0.00	0.00	0.00	2.52
2262	2428	1.682451	CGGGGGTGCCGAGAAGAATA	61.682	60.000	0.00	0.00	0.00	1.75
2330	2496	8.869109	TGAACAATCCAAAACAATAAGATTCCT	58.131	29.630	0.00	0.00	0.00	3.36

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	0.179073	CTCGTCCAATTGGGCTCGAT	60.179	55.000	25.93	0.00	40.12	3.59
2	3	1.218047	CTCGTCCAATTGGGCTCGA	59.782	57.895	25.93	25.85	37.76	4.04
5	6	0.400213	TTGACTCGTCCAATTGGGCT	59.600	50.000	25.93	8.34	37.76	5.19
6	7	1.200020	CTTTGACTCGTCCAATTGGGC	59.800	52.381	24.29	22.02	36.21	5.36
7	8	1.812571	CCTTTGACTCGTCCAATTGGG	59.187	52.381	24.29	10.60	35.41	4.12
8	9	1.200020	GCCTTTGACTCGTCCAATTGG	59.800	52.381	19.08	19.08	0.00	3.16
9	10	1.135972	CGCCTTTGACTCGTCCAATTG	60.136	52.381	0.00	0.00	0.00	2.32
11	12	0.034896	ACGCCTTTGACTCGTCCAAT	59.965	50.000	0.00	0.00	0.00	3.16
12	13	0.675083	TACGCCTTTGACTCGTCCAA	59.325	50.000	0.00	0.00	37.61	3.53
13	14	0.038892	GTACGCCTTTGACTCGTCCA	60.039	55.000	0.00	0.00	37.61	4.02
15	16	1.671880	GCGTACGCCTTTGACTCGTC	61.672	60.000	29.51	0.00	37.61	4.20
16	17	1.731969	GCGTACGCCTTTGACTCGT	60.732	57.895	29.51	0.00	39.88	4.18
17	18	2.774951	CGCGTACGCCTTTGACTCG	61.775	63.158	32.64	12.80	37.98	4.18
18	19	2.442188	CCGCGTACGCCTTTGACTC	61.442	63.158	32.64	4.17	38.22	3.36
19	20	2.431942	CCGCGTACGCCTTTGACT	60.432	61.111	32.64	0.00	38.22	3.41
20	21	4.143363	GCCGCGTACGCCTTTGAC	62.143	66.667	32.64	9.04	38.22	3.18
254	266	2.415983	TTTCCCTCTGAGTTCCTCCA	57.584	50.000	3.66	0.00	0.00	3.86
287	300	1.959226	GCAAGTCGACGGGCAAGAA	60.959	57.895	23.61	0.00	0.00	2.52
296	312	1.954146	TCGGCAACAGCAAGTCGAC	60.954	57.895	7.70	7.70	0.00	4.20
316	335	0.336737	AGATGGGTCTCTTCTCCGGT	59.663	55.000	0.00	0.00	0.00	5.28
369	406	2.608988	CCACACTCTGCTCCCCCT	60.609	66.667	0.00	0.00	0.00	4.79
792	864	7.450074	TGACTTTTTCCTGAAGATTGCTAGTA	58.550	34.615	0.00	0.00	0.00	1.82
793	865	6.299141	TGACTTTTTCCTGAAGATTGCTAGT	58.701	36.000	0.00	0.00	0.00	2.57
794	866	6.808008	TGACTTTTTCCTGAAGATTGCTAG	57.192	37.500	0.00	0.00	0.00	3.42
874	947	1.276622	GAGGAGGAGGGCTTTGTGTA	58.723	55.000	0.00	0.00	0.00	2.90
921	994	1.204146	GGTGGAGTATGGAGCTTGGA	58.796	55.000	0.00	0.00	0.00	3.53
978	1051	3.264897	CGATCTTCTTGGCCGGCG	61.265	66.667	22.54	6.96	0.00	6.46
979	1052	1.884926	CTCGATCTTCTTGGCCGGC	60.885	63.158	21.18	21.18	0.00	6.13
1157	1248	3.785499	CGTCGTCGGCGTCAGAGA	61.785	66.667	11.83	0.00	39.49	3.10
1161	1252	3.345011	TACACGTCGTCGGCGTCA	61.345	61.111	23.74	10.63	40.90	4.35
1358	1465	9.998106	GCTAAGGTGAACAAATATTATAGGAGA	57.002	33.333	0.00	0.00	0.00	3.71
1359	1466	9.778741	TGCTAAGGTGAACAAATATTATAGGAG	57.221	33.333	0.00	0.00	0.00	3.69
1364	1471	7.862372	CGCAATGCTAAGGTGAACAAATATTAT	59.138	33.333	2.94	0.00	0.00	1.28
1365	1472	7.066404	TCGCAATGCTAAGGTGAACAAATATTA	59.934	33.333	2.94	0.00	0.00	0.98
1366	1473	6.035843	CGCAATGCTAAGGTGAACAAATATT	58.964	36.000	2.94	0.00	0.00	1.28
1367	1474	5.356751	TCGCAATGCTAAGGTGAACAAATAT	59.643	36.000	2.94	0.00	0.00	1.28
1368	1475	4.697828	TCGCAATGCTAAGGTGAACAAATA	59.302	37.500	2.94	0.00	0.00	1.40
1369	1476	3.505680	TCGCAATGCTAAGGTGAACAAAT	59.494	39.130	2.94	0.00	0.00	2.32
1370	1477	2.881513	TCGCAATGCTAAGGTGAACAAA	59.118	40.909	2.94	0.00	0.00	2.83
1371	1478	2.483877	CTCGCAATGCTAAGGTGAACAA	59.516	45.455	2.94	0.00	0.00	2.83
1372	1479	2.076100	CTCGCAATGCTAAGGTGAACA	58.924	47.619	2.94	0.00	0.00	3.18
1398	1505	7.569677	GGCAACTAGTAATAAGATAGCTTCG	57.430	40.000	0.00	0.00	35.56	3.79
1424	1531	6.212589	TCACTGTTCTGGTTATTACCTCATGA	59.787	38.462	2.04	0.00	45.27	3.07
1430	1537	4.813027	TCGTCACTGTTCTGGTTATTACC	58.187	43.478	0.00	0.00	45.26	2.85
1435	1542	4.024387	GCAAAATCGTCACTGTTCTGGTTA	60.024	41.667	0.00	0.00	0.00	2.85
1438	1545	2.290367	TGCAAAATCGTCACTGTTCTGG	59.710	45.455	0.00	0.00	0.00	3.86
1448	1555	6.314018	TCTACATTCATGTTGCAAAATCGTC	58.686	36.000	0.00	0.00	41.97	4.20
1471	1578	6.215845	TGACTACCGGTAACTTTGTAACTTC	58.784	40.000	16.65	0.00	0.00	3.01
1478	1633	4.812626	ACACTTTGACTACCGGTAACTTTG	59.187	41.667	16.65	6.00	0.00	2.77
1487	1642	2.129823	ACGTGACACTTTGACTACCG	57.870	50.000	3.68	0.00	0.00	4.02
1515	1670	0.800012	TGTTTCGGAATGTTAGCCGC	59.200	50.000	0.00	0.00	46.79	6.53
1556	1711	1.066858	TCGATCCAAGACCAGACTTGC	60.067	52.381	4.61	0.00	43.83	4.01
1601	1763	3.136443	CCAGCCAATCCCTTGTCTATGTA	59.864	47.826	0.00	0.00	0.00	2.29
1682	1844	6.454795	GCCTTTGAAAGTTCCAATCATACAA	58.545	36.000	4.02	0.00	0.00	2.41
1736	1898	0.908198	AAGCTCTGAACCCCTAGCAG	59.092	55.000	0.00	0.00	37.44	4.24
1792	1955	0.177604	CTTCCTCGATTGCAGCTCCT	59.822	55.000	0.00	0.00	0.00	3.69
1881	2044	8.307483	CCATGTCCACCTAGTCAGTATAATTAG	58.693	40.741	0.00	0.00	0.00	1.73
1912	2075	7.581213	TTAACCATATAATTGTGCTTGGGAG	57.419	36.000	0.00	0.00	0.00	4.30
1947	2110	9.010029	CCTTTTAAGCAAGAACCTGATAACTAA	57.990	33.333	0.00	0.00	0.00	2.24
1951	2114	7.458397	TCTCCTTTTAAGCAAGAACCTGATAA	58.542	34.615	0.00	0.00	0.00	1.75
1998	2161	4.629251	TGGCAAAAAGAAAAACATTGGC	57.371	36.364	0.00	0.00	44.14	4.52
2002	2165	7.913674	TGTACTTTGGCAAAAAGAAAAACAT	57.086	28.000	14.43	0.00	0.00	2.71
2010	2173	4.942852	TGGACATGTACTTTGGCAAAAAG	58.057	39.130	14.43	5.73	0.00	2.27
2011	2174	5.344743	TTGGACATGTACTTTGGCAAAAA	57.655	34.783	14.43	2.33	0.00	1.94
2037	2200	4.645535	TCATTCTCTCCCTTTTGTGACTG	58.354	43.478	0.00	0.00	0.00	3.51
2040	2203	4.460382	GCATTCATTCTCTCCCTTTTGTGA	59.540	41.667	0.00	0.00	0.00	3.58
2074	2237	4.201861	GCACTATGCCTTTTCTCTACAAGC	60.202	45.833	0.00	0.00	37.42	4.01
2192	2358	6.669591	CCTCCATACTCCACATATCCATTAGA	59.330	42.308	0.00	0.00	0.00	2.10
2195	2361	5.415065	TCCTCCATACTCCACATATCCATT	58.585	41.667	0.00	0.00	0.00	3.16
2197	2363	4.485653	TCCTCCATACTCCACATATCCA	57.514	45.455	0.00	0.00	0.00	3.41
2198	2364	4.383552	GCATCCTCCATACTCCACATATCC	60.384	50.000	0.00	0.00	0.00	2.59
2244	2410	0.106894	CTATTCTTCTCGGCACCCCC	59.893	60.000	0.00	0.00	0.00	5.40
2248	2414	1.841450	CGTCCTATTCTTCTCGGCAC	58.159	55.000	0.00	0.00	0.00	5.01
2254	2420	3.961408	ACTGGTATGCGTCCTATTCTTCT	59.039	43.478	0.00	0.00	0.00	2.85
2256	2422	3.961408	AGACTGGTATGCGTCCTATTCTT	59.039	43.478	0.00	0.00	0.00	2.52
2260	2426	2.887783	CAGAGACTGGTATGCGTCCTAT	59.112	50.000	0.00	0.00	0.00	2.57
2262	2428	1.107114	CAGAGACTGGTATGCGTCCT	58.893	55.000	0.00	0.00	0.00	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.