Multiple sequence alignment - TraesCS7B01G122900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G122900 chr7B 100.000 4931 0 0 3533 8463 144288182 144283252 0.000000e+00 9106.0
1 TraesCS7B01G122900 chr7B 100.000 3047 0 0 1 3047 144291714 144288668 0.000000e+00 5627.0
2 TraesCS7B01G122900 chr7B 79.648 796 137 22 1427 2214 739397858 739398636 4.470000e-152 549.0
3 TraesCS7B01G122900 chr7B 100.000 30 0 0 1345 1374 57686987 57687016 1.000000e-03 56.5
4 TraesCS7B01G122900 chr5B 99.028 2470 23 1 3572 6040 497752850 497755319 0.000000e+00 4427.0
5 TraesCS7B01G122900 chr5B 96.850 984 24 6 1 983 367919823 367920800 0.000000e+00 1639.0
6 TraesCS7B01G122900 chr5B 96.646 984 28 4 1 983 367926701 367927680 0.000000e+00 1629.0
7 TraesCS7B01G122900 chr5B 96.545 984 28 4 1 983 88155437 88156415 0.000000e+00 1624.0
8 TraesCS7B01G122900 chr5B 96.545 984 29 4 1 983 367933591 367934570 0.000000e+00 1624.0
9 TraesCS7B01G122900 chr5B 95.984 996 33 5 1 995 470414418 470413429 0.000000e+00 1611.0
10 TraesCS7B01G122900 chr5B 84.286 350 53 2 2451 2799 426984452 426984800 2.930000e-89 340.0
11 TraesCS7B01G122900 chr5B 82.710 214 33 3 1179 1390 426661763 426661974 4.030000e-43 187.0
12 TraesCS7B01G122900 chr2B 96.276 1960 49 12 986 2943 79655865 79657802 0.000000e+00 3193.0
13 TraesCS7B01G122900 chr2B 96.248 1919 45 12 986 2901 697555532 697553638 0.000000e+00 3120.0
14 TraesCS7B01G122900 chr2B 83.471 363 56 1 8105 8463 463436346 463436708 1.360000e-87 335.0
15 TraesCS7B01G122900 chr2B 88.750 80 9 0 8016 8095 747578873 747578794 1.940000e-16 99.0
16 TraesCS7B01G122900 chr2B 88.750 80 9 0 8016 8095 747607488 747607409 1.940000e-16 99.0
17 TraesCS7B01G122900 chr2B 84.848 99 12 3 4211 4307 743360201 743360104 6.990000e-16 97.1
18 TraesCS7B01G122900 chr2B 86.585 82 7 2 1422 1501 94011754 94011675 4.210000e-13 87.9
19 TraesCS7B01G122900 chr2B 93.478 46 3 0 2900 2945 697548255 697548210 1.520000e-07 69.4
20 TraesCS7B01G122900 chr6B 97.387 1684 36 4 989 2671 668244276 668242600 0.000000e+00 2859.0
21 TraesCS7B01G122900 chr7D 93.324 1468 74 9 6262 7709 178146677 178145214 0.000000e+00 2146.0
22 TraesCS7B01G122900 chr7D 91.367 278 24 0 8186 8463 178145067 178144790 1.720000e-101 381.0
23 TraesCS7B01G122900 chr7D 85.797 345 43 6 2458 2799 453265539 453265198 2.250000e-95 361.0
24 TraesCS7B01G122900 chr7D 85.981 321 37 8 2478 2793 9205907 9205590 3.780000e-88 337.0
25 TraesCS7B01G122900 chr7D 80.627 351 59 5 8112 8462 79948026 79948367 6.510000e-66 263.0
26 TraesCS7B01G122900 chr7D 92.188 64 4 1 2941 3004 178156372 178156310 1.170000e-13 89.8
27 TraesCS7B01G122900 chr7D 92.188 64 4 1 2941 3004 178156443 178156381 1.170000e-13 89.8
28 TraesCS7B01G122900 chr2D 95.933 1254 43 6 3572 4822 89091408 89092656 0.000000e+00 2026.0
29 TraesCS7B01G122900 chr2D 95.139 1255 54 4 3572 4822 105008204 105006953 0.000000e+00 1973.0
30 TraesCS7B01G122900 chr2D 97.853 326 6 1 5715 6040 89093343 89093667 5.740000e-156 562.0
31 TraesCS7B01G122900 chr2D 96.933 326 10 0 5715 6040 105006267 105005942 1.610000e-151 547.0
32 TraesCS7B01G122900 chr2D 77.906 955 160 33 1425 2351 513038836 513037905 1.610000e-151 547.0
33 TraesCS7B01G122900 chr2D 84.848 99 12 3 4211 4307 609315955 609315858 6.990000e-16 97.1
34 TraesCS7B01G122900 chr7A 87.684 1762 180 22 1041 2787 108506301 108504562 0.000000e+00 2017.0
35 TraesCS7B01G122900 chr7A 88.791 1588 133 23 6054 7612 182331398 182329827 0.000000e+00 1905.0
36 TraesCS7B01G122900 chr7A 86.472 547 71 3 4690 5234 669700509 669701054 1.570000e-166 597.0
37 TraesCS7B01G122900 chr7A 86.289 547 73 2 4690 5234 706431313 706431859 2.030000e-165 593.0
38 TraesCS7B01G122900 chr7A 78.195 266 47 6 1053 1316 31536163 31535907 8.790000e-35 159.0
39 TraesCS7B01G122900 chr7A 77.820 266 48 6 1053 1316 31554604 31554348 4.090000e-33 154.0
40 TraesCS7B01G122900 chr7A 79.039 229 40 5 1053 1279 31517722 31517500 5.290000e-32 150.0
41 TraesCS7B01G122900 chr7A 93.421 76 5 0 2868 2943 108504529 108504454 6.940000e-21 113.0
42 TraesCS7B01G122900 chr1D 95.155 1259 48 8 3572 4822 293915464 293916717 0.000000e+00 1975.0
43 TraesCS7B01G122900 chr1D 94.627 335 7 2 5715 6040 293917400 293917732 7.580000e-140 508.0
44 TraesCS7B01G122900 chr4D 95.056 1254 44 8 3572 4822 491707805 491709043 0.000000e+00 1956.0
45 TraesCS7B01G122900 chr4D 97.239 326 9 0 5715 6040 491709728 491710053 3.450000e-153 553.0
46 TraesCS7B01G122900 chr4D 77.561 820 134 31 1559 2351 454815531 454816327 4.660000e-122 449.0
47 TraesCS7B01G122900 chr4D 89.011 364 36 3 8100 8461 8091417 8091056 1.680000e-121 448.0
48 TraesCS7B01G122900 chr4A 96.850 984 26 3 1 983 667359114 667360093 0.000000e+00 1640.0
49 TraesCS7B01G122900 chr4A 80.800 125 18 6 2229 2351 621783657 621783777 9.050000e-15 93.5
50 TraesCS7B01G122900 chr3B 96.646 984 27 4 1 983 136825093 136824115 0.000000e+00 1629.0
51 TraesCS7B01G122900 chr3B 80.026 756 100 25 6785 7515 764747586 764746857 5.860000e-141 512.0
52 TraesCS7B01G122900 chr3B 78.153 888 122 47 6785 7649 764777974 764777136 4.560000e-137 499.0
53 TraesCS7B01G122900 chr3B 79.943 698 101 19 6785 7462 764698977 764698299 2.140000e-130 477.0
54 TraesCS7B01G122900 chr3B 79.971 699 98 23 6785 7462 764740093 764739416 2.140000e-130 477.0
55 TraesCS7B01G122900 chr3B 80.870 575 87 14 6078 6645 764748215 764747657 1.690000e-116 431.0
56 TraesCS7B01G122900 chr3B 80.171 585 84 18 6080 6645 764740750 764740179 7.910000e-110 409.0
57 TraesCS7B01G122900 chr3B 79.693 586 85 17 6080 6645 764699634 764699063 7.960000e-105 392.0
58 TraesCS7B01G122900 chr3B 82.569 109 11 3 7415 7515 764723478 764723370 1.170000e-13 89.8
59 TraesCS7B01G122900 chr4B 96.640 982 28 3 3 983 554742906 554743883 0.000000e+00 1626.0
60 TraesCS7B01G122900 chr1B 96.545 984 27 5 1 983 399388688 399387711 0.000000e+00 1622.0
61 TraesCS7B01G122900 chr1B 83.916 572 90 2 4665 5234 159865126 159865697 5.780000e-151 545.0
62 TraesCS7B01G122900 chr1B 85.938 320 38 7 2478 2793 26584391 26584075 1.360000e-87 335.0
63 TraesCS7B01G122900 chr5D 81.487 1399 190 37 986 2353 361342967 361344327 0.000000e+00 1085.0
64 TraesCS7B01G122900 chr5D 83.280 939 89 32 6169 7097 494476538 494475658 0.000000e+00 802.0
65 TraesCS7B01G122900 chr5D 79.318 938 139 29 1440 2351 508161948 508161040 2.610000e-169 606.0
66 TraesCS7B01G122900 chr5D 78.481 316 27 20 7348 7645 494475476 494475184 1.460000e-37 169.0
67 TraesCS7B01G122900 chr3A 93.793 580 27 4 3572 4143 579516675 579516097 0.000000e+00 863.0
68 TraesCS7B01G122900 chr3A 82.642 651 77 17 6078 6719 710333670 710333047 2.080000e-150 544.0
69 TraesCS7B01G122900 chr3A 84.643 560 68 10 6172 6719 710385269 710384716 7.470000e-150 542.0
70 TraesCS7B01G122900 chr3A 82.812 576 84 11 6080 6645 710329059 710328489 1.270000e-137 501.0
71 TraesCS7B01G122900 chr3A 81.629 577 88 13 6080 6645 710441221 710440652 5.980000e-126 462.0
72 TraesCS7B01G122900 chr3A 79.714 700 84 33 6782 7451 710280868 710280197 3.600000e-123 453.0
73 TraesCS7B01G122900 chr3A 82.115 520 79 10 6080 6589 710380484 710379969 4.690000e-117 433.0
74 TraesCS7B01G122900 chr1A 87.709 537 51 10 4699 5234 564770493 564771015 5.620000e-171 612.0
75 TraesCS7B01G122900 chr1A 86.226 363 49 1 8100 8461 589862586 589862224 7.960000e-105 392.0
76 TraesCS7B01G122900 chr1A 83.836 365 58 1 8100 8463 505131965 505131601 6.290000e-91 346.0
77 TraesCS7B01G122900 chrUn 91.610 441 35 2 2025 2465 87367143 87367581 7.260000e-170 608.0
78 TraesCS7B01G122900 chrUn 91.367 278 21 3 2520 2795 87367570 87367846 2.230000e-100 377.0
79 TraesCS7B01G122900 chrUn 78.571 266 46 6 1053 1316 359467274 359467018 1.890000e-36 165.0
80 TraesCS7B01G122900 chrUn 79.039 229 40 5 1053 1279 350568446 350568224 5.290000e-32 150.0
81 TraesCS7B01G122900 chr2A 89.035 456 47 3 3571 4024 197279180 197279634 5.740000e-156 562.0
82 TraesCS7B01G122900 chr2A 85.359 362 53 0 8100 8461 125946566 125946205 8.020000e-100 375.0
83 TraesCS7B01G122900 chr2A 83.740 123 18 2 2229 2351 199107673 199107553 1.930000e-21 115.0
84 TraesCS7B01G122900 chr2A 86.598 97 10 3 4213 4307 741237079 741236984 4.180000e-18 104.0
85 TraesCS7B01G122900 chr2A 100.000 32 0 0 1343 1374 679011587 679011618 9.170000e-05 60.2
86 TraesCS7B01G122900 chr6D 83.516 364 56 2 8097 8458 418944102 418944463 3.780000e-88 337.0
87 TraesCS7B01G122900 chr5A 83.288 365 60 1 8100 8463 567882416 567882052 1.360000e-87 335.0
88 TraesCS7B01G122900 chr5A 88.350 206 24 0 7892 8097 567883068 567882863 1.820000e-61 248.0
89 TraesCS7B01G122900 chr5A 91.129 124 5 5 7348 7469 617366005 617365886 6.800000e-36 163.0
90 TraesCS7B01G122900 chr5A 84.921 126 15 4 2226 2351 677156030 677155909 3.210000e-24 124.0
91 TraesCS7B01G122900 chr3D 77.966 236 20 18 7186 7393 575056343 575056574 1.490000e-22 119.0
92 TraesCS7B01G122900 chr3D 97.297 37 0 1 1340 1375 131342588 131342624 2.550000e-05 62.1
93 TraesCS7B01G122900 chr6A 83.740 123 18 2 2229 2351 378169866 378169986 1.930000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G122900 chr7B 144283252 144291714 8462 True 7366.5 9106 100.0000 1 8463 2 chr7B.!!$R1 8462
1 TraesCS7B01G122900 chr7B 739397858 739398636 778 False 549.0 549 79.6480 1427 2214 1 chr7B.!!$F2 787
2 TraesCS7B01G122900 chr5B 497752850 497755319 2469 False 4427.0 4427 99.0280 3572 6040 1 chr5B.!!$F7 2468
3 TraesCS7B01G122900 chr5B 367919823 367920800 977 False 1639.0 1639 96.8500 1 983 1 chr5B.!!$F2 982
4 TraesCS7B01G122900 chr5B 367926701 367927680 979 False 1629.0 1629 96.6460 1 983 1 chr5B.!!$F3 982
5 TraesCS7B01G122900 chr5B 88155437 88156415 978 False 1624.0 1624 96.5450 1 983 1 chr5B.!!$F1 982
6 TraesCS7B01G122900 chr5B 367933591 367934570 979 False 1624.0 1624 96.5450 1 983 1 chr5B.!!$F4 982
7 TraesCS7B01G122900 chr5B 470413429 470414418 989 True 1611.0 1611 95.9840 1 995 1 chr5B.!!$R1 994
8 TraesCS7B01G122900 chr2B 79655865 79657802 1937 False 3193.0 3193 96.2760 986 2943 1 chr2B.!!$F1 1957
9 TraesCS7B01G122900 chr2B 697553638 697555532 1894 True 3120.0 3120 96.2480 986 2901 1 chr2B.!!$R3 1915
10 TraesCS7B01G122900 chr6B 668242600 668244276 1676 True 2859.0 2859 97.3870 989 2671 1 chr6B.!!$R1 1682
11 TraesCS7B01G122900 chr7D 178144790 178146677 1887 True 1263.5 2146 92.3455 6262 8463 2 chr7D.!!$R3 2201
12 TraesCS7B01G122900 chr2D 89091408 89093667 2259 False 1294.0 2026 96.8930 3572 6040 2 chr2D.!!$F1 2468
13 TraesCS7B01G122900 chr2D 105005942 105008204 2262 True 1260.0 1973 96.0360 3572 6040 2 chr2D.!!$R3 2468
14 TraesCS7B01G122900 chr2D 513037905 513038836 931 True 547.0 547 77.9060 1425 2351 1 chr2D.!!$R1 926
15 TraesCS7B01G122900 chr7A 182329827 182331398 1571 True 1905.0 1905 88.7910 6054 7612 1 chr7A.!!$R4 1558
16 TraesCS7B01G122900 chr7A 108504454 108506301 1847 True 1065.0 2017 90.5525 1041 2943 2 chr7A.!!$R5 1902
17 TraesCS7B01G122900 chr7A 669700509 669701054 545 False 597.0 597 86.4720 4690 5234 1 chr7A.!!$F1 544
18 TraesCS7B01G122900 chr7A 706431313 706431859 546 False 593.0 593 86.2890 4690 5234 1 chr7A.!!$F2 544
19 TraesCS7B01G122900 chr1D 293915464 293917732 2268 False 1241.5 1975 94.8910 3572 6040 2 chr1D.!!$F1 2468
20 TraesCS7B01G122900 chr4D 491707805 491710053 2248 False 1254.5 1956 96.1475 3572 6040 2 chr4D.!!$F2 2468
21 TraesCS7B01G122900 chr4D 454815531 454816327 796 False 449.0 449 77.5610 1559 2351 1 chr4D.!!$F1 792
22 TraesCS7B01G122900 chr4A 667359114 667360093 979 False 1640.0 1640 96.8500 1 983 1 chr4A.!!$F2 982
23 TraesCS7B01G122900 chr3B 136824115 136825093 978 True 1629.0 1629 96.6460 1 983 1 chr3B.!!$R1 982
24 TraesCS7B01G122900 chr3B 764777136 764777974 838 True 499.0 499 78.1530 6785 7649 1 chr3B.!!$R3 864
25 TraesCS7B01G122900 chr3B 764746857 764748215 1358 True 471.5 512 80.4480 6078 7515 2 chr3B.!!$R6 1437
26 TraesCS7B01G122900 chr3B 764739416 764740750 1334 True 443.0 477 80.0710 6080 7462 2 chr3B.!!$R5 1382
27 TraesCS7B01G122900 chr3B 764698299 764699634 1335 True 434.5 477 79.8180 6080 7462 2 chr3B.!!$R4 1382
28 TraesCS7B01G122900 chr4B 554742906 554743883 977 False 1626.0 1626 96.6400 3 983 1 chr4B.!!$F1 980
29 TraesCS7B01G122900 chr1B 399387711 399388688 977 True 1622.0 1622 96.5450 1 983 1 chr1B.!!$R2 982
30 TraesCS7B01G122900 chr1B 159865126 159865697 571 False 545.0 545 83.9160 4665 5234 1 chr1B.!!$F1 569
31 TraesCS7B01G122900 chr5D 361342967 361344327 1360 False 1085.0 1085 81.4870 986 2353 1 chr5D.!!$F1 1367
32 TraesCS7B01G122900 chr5D 508161040 508161948 908 True 606.0 606 79.3180 1440 2351 1 chr5D.!!$R1 911
33 TraesCS7B01G122900 chr5D 494475184 494476538 1354 True 485.5 802 80.8805 6169 7645 2 chr5D.!!$R2 1476
34 TraesCS7B01G122900 chr3A 579516097 579516675 578 True 863.0 863 93.7930 3572 4143 1 chr3A.!!$R1 571
35 TraesCS7B01G122900 chr3A 710384716 710385269 553 True 542.0 542 84.6430 6172 6719 1 chr3A.!!$R4 547
36 TraesCS7B01G122900 chr3A 710328489 710333670 5181 True 522.5 544 82.7270 6078 6719 2 chr3A.!!$R6 641
37 TraesCS7B01G122900 chr3A 710440652 710441221 569 True 462.0 462 81.6290 6080 6645 1 chr3A.!!$R5 565
38 TraesCS7B01G122900 chr3A 710280197 710280868 671 True 453.0 453 79.7140 6782 7451 1 chr3A.!!$R2 669
39 TraesCS7B01G122900 chr3A 710379969 710380484 515 True 433.0 433 82.1150 6080 6589 1 chr3A.!!$R3 509
40 TraesCS7B01G122900 chr1A 564770493 564771015 522 False 612.0 612 87.7090 4699 5234 1 chr1A.!!$F1 535
41 TraesCS7B01G122900 chrUn 87367143 87367846 703 False 492.5 608 91.4885 2025 2795 2 chrUn.!!$F1 770
42 TraesCS7B01G122900 chr5A 567882052 567883068 1016 True 291.5 335 85.8190 7892 8463 2 chr5A.!!$R3 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 520 1.138228 GTGGAAACCTAGGTGGGGGT 61.138 60.000 17.14 0.00 41.11 4.95 F
1942 1953 0.888736 TTGGCCCATGTCTGACAACG 60.889 55.000 15.31 8.93 0.00 4.10 F
2812 2853 3.262660 AGGAGTTTCATCTGCTGACATCA 59.737 43.478 0.00 0.00 34.94 3.07 F
3020 3061 0.109873 CGTAAACGCTCAGTCGTCCT 60.110 55.000 0.00 0.00 42.46 3.85 F
4176 4243 0.813821 GTTCCATTGCTCCTGGCTTC 59.186 55.000 0.00 0.00 42.39 3.86 F
4685 4755 0.391661 GATTTCGAGGCTCTGCACCA 60.392 55.000 13.50 0.00 0.00 4.17 F
6354 6758 0.531532 GTGTCCATCTCCATCGCCAG 60.532 60.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2192 3.791993 TGTTTACACACGAATTACCGC 57.208 42.857 0.00 0.00 0.00 5.68 R
2825 2866 0.035317 TGCGGTGTCAGCAGATTCTT 59.965 50.000 2.47 0.00 40.01 2.52 R
4396 4463 1.899142 TGTACATCAGCTGGCTGTGTA 59.101 47.619 24.40 21.04 43.96 2.90 R
4685 4755 7.227156 AGTTGAACTAAACTGATGACCAGAAT 58.773 34.615 0.00 0.00 45.78 2.40 R
6126 6527 0.605589 GCTGATAGTCCCATCGGAGG 59.394 60.000 0.00 0.00 39.51 4.30 R
6473 6886 0.178998 ATGGCCATGGACTGATCAGC 60.179 55.000 20.04 14.64 0.00 4.26 R
7808 12970 0.033991 TCAAGGGAGCGCTAGACTCT 60.034 55.000 11.50 0.00 34.46 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 1.269309 GGATGAGATCCCGAACGTCAG 60.269 57.143 0.00 0.00 43.88 3.51
517 520 1.138228 GTGGAAACCTAGGTGGGGGT 61.138 60.000 17.14 0.00 41.11 4.95
569 572 4.950200 TTGGAGCAGCCCAACAAT 57.050 50.000 10.42 0.00 40.99 2.71
570 573 2.353858 TTGGAGCAGCCCAACAATG 58.646 52.632 10.42 0.00 40.99 2.82
750 753 1.596934 GATCAAGGCGTGGGAGACA 59.403 57.895 0.00 0.00 0.00 3.41
759 762 2.121832 TGGGAGACATCACCGGGT 59.878 61.111 6.32 0.00 0.00 5.28
934 937 7.342769 TCGTTGCTAGTTTCTCCATAGATAA 57.657 36.000 0.00 0.00 0.00 1.75
940 943 9.988815 TGCTAGTTTCTCCATAGATAAATCTTC 57.011 33.333 0.00 0.00 38.32 2.87
983 986 2.871096 TTTCTGCTACGTTCCCCAAT 57.129 45.000 0.00 0.00 0.00 3.16
984 987 3.985019 TTTCTGCTACGTTCCCCAATA 57.015 42.857 0.00 0.00 0.00 1.90
1028 1031 4.631740 TCCGTGGCAGGAGGTGGA 62.632 66.667 9.09 0.00 34.92 4.02
1161 1164 3.710722 CCTCCCGCTTGGACTGCT 61.711 66.667 0.00 0.00 38.61 4.24
1162 1165 2.125350 CTCCCGCTTGGACTGCTC 60.125 66.667 0.00 0.00 38.61 4.26
1163 1166 2.922503 TCCCGCTTGGACTGCTCA 60.923 61.111 0.00 0.00 38.61 4.26
1164 1167 2.032528 CCCGCTTGGACTGCTCAA 59.967 61.111 0.00 0.00 35.39 3.02
1214 1217 4.161295 CATCCGGAGCCGCCTGAA 62.161 66.667 11.34 0.00 33.30 3.02
1215 1218 3.164269 ATCCGGAGCCGCCTGAAT 61.164 61.111 11.34 0.00 33.30 2.57
1675 1682 3.131577 GGAAACATACCCCCGGAAATTTC 59.868 47.826 9.83 9.83 0.00 2.17
1769 1777 5.395990 CCCCGGTAACTCATGTGTAAATAGT 60.396 44.000 0.00 0.00 0.00 2.12
1942 1953 0.888736 TTGGCCCATGTCTGACAACG 60.889 55.000 15.31 8.93 0.00 4.10
1988 1999 6.019479 CGAAACCTACAAACATGAGATCTAGC 60.019 42.308 0.00 0.00 0.00 3.42
2180 2192 6.494893 TCAAAGGAACCATTTTCTATGTCG 57.505 37.500 0.00 0.00 0.00 4.35
2516 2552 8.986477 AAGGTTAAAGATCATTTTTCAATCCG 57.014 30.769 0.00 0.00 0.00 4.18
2755 2796 8.949177 AGTTTTGAAAAAGAATTTGCTGACATT 58.051 25.926 0.00 0.00 39.02 2.71
2799 2840 6.121590 TGCATGCATCTAATTAGGAGTTTCA 58.878 36.000 18.46 3.63 0.00 2.69
2800 2841 6.774170 TGCATGCATCTAATTAGGAGTTTCAT 59.226 34.615 18.46 5.51 0.00 2.57
2803 2844 8.504815 CATGCATCTAATTAGGAGTTTCATCTG 58.495 37.037 12.54 0.00 0.00 2.90
2804 2845 6.484643 TGCATCTAATTAGGAGTTTCATCTGC 59.515 38.462 12.54 6.96 0.00 4.26
2805 2846 6.709846 GCATCTAATTAGGAGTTTCATCTGCT 59.290 38.462 12.54 0.00 39.35 4.24
2807 2848 7.423844 TCTAATTAGGAGTTTCATCTGCTGA 57.576 36.000 12.54 0.00 36.80 4.26
2808 2849 7.268586 TCTAATTAGGAGTTTCATCTGCTGAC 58.731 38.462 12.54 0.00 36.80 3.51
2810 2851 3.996921 AGGAGTTTCATCTGCTGACAT 57.003 42.857 0.00 0.00 34.94 3.06
2812 2853 3.262660 AGGAGTTTCATCTGCTGACATCA 59.737 43.478 0.00 0.00 34.94 3.07
2814 2855 4.272991 GGAGTTTCATCTGCTGACATCATC 59.727 45.833 0.00 0.00 32.17 2.92
2831 2872 9.467258 TGACATCATCAGTTTTGAAAAAGAATC 57.533 29.630 0.00 0.00 36.78 2.52
2832 2873 9.688592 GACATCATCAGTTTTGAAAAAGAATCT 57.311 29.630 0.00 0.00 36.78 2.40
2833 2874 9.472361 ACATCATCAGTTTTGAAAAAGAATCTG 57.528 29.630 0.00 0.00 36.78 2.90
2834 2875 7.935338 TCATCAGTTTTGAAAAAGAATCTGC 57.065 32.000 0.00 0.00 36.78 4.26
2835 2876 7.719483 TCATCAGTTTTGAAAAAGAATCTGCT 58.281 30.769 0.00 0.00 36.78 4.24
2849 2890 1.317613 TCTGCTGACACCGCAAAAAT 58.682 45.000 0.00 0.00 36.88 1.82
2943 2984 3.119849 CCGGATTTTAGCACTGTCCTTTG 60.120 47.826 0.00 0.00 0.00 2.77
2944 2985 3.119849 CGGATTTTAGCACTGTCCTTTGG 60.120 47.826 0.00 0.00 0.00 3.28
2945 2986 3.826729 GGATTTTAGCACTGTCCTTTGGT 59.173 43.478 0.00 0.00 0.00 3.67
2946 2987 4.280929 GGATTTTAGCACTGTCCTTTGGTT 59.719 41.667 0.00 0.00 0.00 3.67
2947 2988 5.221441 GGATTTTAGCACTGTCCTTTGGTTT 60.221 40.000 0.00 0.00 0.00 3.27
2948 2989 5.669164 TTTTAGCACTGTCCTTTGGTTTT 57.331 34.783 0.00 0.00 0.00 2.43
2949 2990 6.777213 TTTTAGCACTGTCCTTTGGTTTTA 57.223 33.333 0.00 0.00 0.00 1.52
2950 2991 6.969993 TTTAGCACTGTCCTTTGGTTTTAT 57.030 33.333 0.00 0.00 0.00 1.40
2951 2992 4.853924 AGCACTGTCCTTTGGTTTTATG 57.146 40.909 0.00 0.00 0.00 1.90
2952 2993 4.215109 AGCACTGTCCTTTGGTTTTATGT 58.785 39.130 0.00 0.00 0.00 2.29
2953 2994 4.649218 AGCACTGTCCTTTGGTTTTATGTT 59.351 37.500 0.00 0.00 0.00 2.71
2954 2995 4.744631 GCACTGTCCTTTGGTTTTATGTTG 59.255 41.667 0.00 0.00 0.00 3.33
2955 2996 4.744631 CACTGTCCTTTGGTTTTATGTTGC 59.255 41.667 0.00 0.00 0.00 4.17
2956 2997 4.404073 ACTGTCCTTTGGTTTTATGTTGCA 59.596 37.500 0.00 0.00 0.00 4.08
2957 2998 5.105146 ACTGTCCTTTGGTTTTATGTTGCAA 60.105 36.000 0.00 0.00 0.00 4.08
2958 2999 5.355596 TGTCCTTTGGTTTTATGTTGCAAG 58.644 37.500 0.00 0.00 0.00 4.01
2959 3000 4.749598 GTCCTTTGGTTTTATGTTGCAAGG 59.250 41.667 0.00 0.00 0.00 3.61
2960 3001 4.651503 TCCTTTGGTTTTATGTTGCAAGGA 59.348 37.500 0.00 0.00 36.94 3.36
2961 3002 5.306678 TCCTTTGGTTTTATGTTGCAAGGAT 59.693 36.000 0.00 0.00 34.85 3.24
2962 3003 6.495181 TCCTTTGGTTTTATGTTGCAAGGATA 59.505 34.615 0.00 0.00 34.85 2.59
2963 3004 6.813152 CCTTTGGTTTTATGTTGCAAGGATAG 59.187 38.462 0.00 0.00 32.72 2.08
2964 3005 7.309744 CCTTTGGTTTTATGTTGCAAGGATAGA 60.310 37.037 0.00 0.00 32.72 1.98
2965 3006 7.716799 TTGGTTTTATGTTGCAAGGATAGAT 57.283 32.000 0.00 0.00 0.00 1.98
2966 3007 8.815565 TTGGTTTTATGTTGCAAGGATAGATA 57.184 30.769 0.00 0.00 0.00 1.98
2967 3008 8.450578 TGGTTTTATGTTGCAAGGATAGATAG 57.549 34.615 0.00 0.00 0.00 2.08
2968 3009 7.013274 TGGTTTTATGTTGCAAGGATAGATAGC 59.987 37.037 0.00 0.38 0.00 2.97
2969 3010 7.013274 GGTTTTATGTTGCAAGGATAGATAGCA 59.987 37.037 0.00 0.00 0.00 3.49
2970 3011 7.496529 TTTATGTTGCAAGGATAGATAGCAC 57.503 36.000 0.00 0.00 34.56 4.40
2971 3012 3.457234 TGTTGCAAGGATAGATAGCACG 58.543 45.455 0.00 0.00 34.56 5.34
2972 3013 3.132111 TGTTGCAAGGATAGATAGCACGA 59.868 43.478 0.00 0.00 34.56 4.35
2973 3014 3.371102 TGCAAGGATAGATAGCACGAC 57.629 47.619 0.00 0.00 0.00 4.34
2974 3015 2.693074 TGCAAGGATAGATAGCACGACA 59.307 45.455 0.00 0.00 0.00 4.35
2975 3016 3.132111 TGCAAGGATAGATAGCACGACAA 59.868 43.478 0.00 0.00 0.00 3.18
2976 3017 4.119862 GCAAGGATAGATAGCACGACAAA 58.880 43.478 0.00 0.00 0.00 2.83
2977 3018 4.752101 GCAAGGATAGATAGCACGACAAAT 59.248 41.667 0.00 0.00 0.00 2.32
2978 3019 5.237344 GCAAGGATAGATAGCACGACAAATT 59.763 40.000 0.00 0.00 0.00 1.82
2979 3020 6.238484 GCAAGGATAGATAGCACGACAAATTT 60.238 38.462 0.00 0.00 0.00 1.82
2980 3021 7.679638 GCAAGGATAGATAGCACGACAAATTTT 60.680 37.037 0.00 0.00 0.00 1.82
2981 3022 7.484035 AGGATAGATAGCACGACAAATTTTC 57.516 36.000 0.00 0.00 0.00 2.29
2982 3023 7.047891 AGGATAGATAGCACGACAAATTTTCA 58.952 34.615 0.00 0.00 0.00 2.69
2983 3024 7.011482 AGGATAGATAGCACGACAAATTTTCAC 59.989 37.037 0.00 0.00 0.00 3.18
2984 3025 4.957971 AGATAGCACGACAAATTTTCACG 58.042 39.130 0.00 0.00 0.00 4.35
2985 3026 4.451096 AGATAGCACGACAAATTTTCACGT 59.549 37.500 7.82 7.82 37.68 4.49
2986 3027 3.414549 AGCACGACAAATTTTCACGTT 57.585 38.095 10.08 0.00 35.05 3.99
2987 3028 4.539509 AGCACGACAAATTTTCACGTTA 57.460 36.364 10.08 0.00 35.05 3.18
2988 3029 4.911053 AGCACGACAAATTTTCACGTTAA 58.089 34.783 10.08 0.00 35.05 2.01
2989 3030 5.333513 AGCACGACAAATTTTCACGTTAAA 58.666 33.333 10.08 0.00 35.05 1.52
2990 3031 5.454232 AGCACGACAAATTTTCACGTTAAAG 59.546 36.000 10.08 0.00 35.05 1.85
2991 3032 5.228427 GCACGACAAATTTTCACGTTAAAGT 59.772 36.000 10.08 0.00 35.05 2.66
2992 3033 6.237358 GCACGACAAATTTTCACGTTAAAGTT 60.237 34.615 10.08 0.00 35.05 2.66
2993 3034 7.044836 GCACGACAAATTTTCACGTTAAAGTTA 60.045 33.333 3.76 0.00 35.05 2.24
2994 3035 8.247774 CACGACAAATTTTCACGTTAAAGTTAC 58.752 33.333 3.76 2.98 35.05 2.50
2995 3036 7.961827 ACGACAAATTTTCACGTTAAAGTTACA 59.038 29.630 3.76 0.00 33.48 2.41
2996 3037 8.949953 CGACAAATTTTCACGTTAAAGTTACAT 58.050 29.630 3.76 0.00 0.00 2.29
2998 3039 8.536407 ACAAATTTTCACGTTAAAGTTACATGC 58.464 29.630 3.76 0.00 0.00 4.06
2999 3040 8.535592 CAAATTTTCACGTTAAAGTTACATGCA 58.464 29.630 3.76 0.00 0.00 3.96
3000 3041 8.635877 AATTTTCACGTTAAAGTTACATGCAA 57.364 26.923 1.59 0.00 0.00 4.08
3001 3042 7.439204 TTTTCACGTTAAAGTTACATGCAAC 57.561 32.000 0.10 0.10 0.00 4.17
3002 3043 4.763874 TCACGTTAAAGTTACATGCAACG 58.236 39.130 3.15 0.00 43.10 4.10
3003 3044 4.799419 ACGTTAAAGTTACATGCAACGT 57.201 36.364 3.15 4.64 44.86 3.99
3004 3045 5.903764 ACGTTAAAGTTACATGCAACGTA 57.096 34.783 8.37 0.00 46.93 3.57
3005 3046 6.284475 ACGTTAAAGTTACATGCAACGTAA 57.716 33.333 8.37 6.11 46.93 3.18
3006 3047 6.713520 ACGTTAAAGTTACATGCAACGTAAA 58.286 32.000 12.24 0.00 46.93 2.01
3007 3048 6.628461 ACGTTAAAGTTACATGCAACGTAAAC 59.372 34.615 12.24 7.78 46.93 2.01
3008 3049 6.183359 CGTTAAAGTTACATGCAACGTAAACG 60.183 38.462 20.59 20.59 46.33 3.60
3009 3050 3.177605 AGTTACATGCAACGTAAACGC 57.822 42.857 12.24 3.14 44.43 4.84
3010 3051 2.803956 AGTTACATGCAACGTAAACGCT 59.196 40.909 12.24 4.98 44.43 5.07
3011 3052 3.120786 AGTTACATGCAACGTAAACGCTC 60.121 43.478 12.24 2.56 44.43 5.03
3012 3053 1.222300 ACATGCAACGTAAACGCTCA 58.778 45.000 1.74 0.00 44.43 4.26
3013 3054 1.194547 ACATGCAACGTAAACGCTCAG 59.805 47.619 1.74 0.00 44.43 3.35
3014 3055 1.194547 CATGCAACGTAAACGCTCAGT 59.805 47.619 1.74 0.00 44.43 3.41
3015 3056 0.856641 TGCAACGTAAACGCTCAGTC 59.143 50.000 1.74 0.00 44.43 3.51
3016 3057 0.179282 GCAACGTAAACGCTCAGTCG 60.179 55.000 1.74 0.00 44.43 4.18
3017 3058 1.126079 CAACGTAAACGCTCAGTCGT 58.874 50.000 1.74 0.00 45.58 4.34
3018 3059 1.121967 CAACGTAAACGCTCAGTCGTC 59.878 52.381 1.74 0.00 42.46 4.20
3019 3060 0.386478 ACGTAAACGCTCAGTCGTCC 60.386 55.000 1.74 0.00 42.46 4.79
3020 3061 0.109873 CGTAAACGCTCAGTCGTCCT 60.110 55.000 0.00 0.00 42.46 3.85
3021 3062 1.129251 CGTAAACGCTCAGTCGTCCTA 59.871 52.381 0.00 0.00 42.46 2.94
3022 3063 2.413239 CGTAAACGCTCAGTCGTCCTAA 60.413 50.000 0.00 0.00 42.46 2.69
3023 3064 2.061740 AAACGCTCAGTCGTCCTAAC 57.938 50.000 0.00 0.00 42.46 2.34
3024 3065 0.956633 AACGCTCAGTCGTCCTAACA 59.043 50.000 0.00 0.00 42.46 2.41
3025 3066 1.174783 ACGCTCAGTCGTCCTAACAT 58.825 50.000 0.00 0.00 38.44 2.71
3026 3067 1.544691 ACGCTCAGTCGTCCTAACATT 59.455 47.619 0.00 0.00 38.44 2.71
3027 3068 2.751259 ACGCTCAGTCGTCCTAACATTA 59.249 45.455 0.00 0.00 38.44 1.90
3028 3069 3.181499 ACGCTCAGTCGTCCTAACATTAG 60.181 47.826 0.00 0.00 38.44 1.73
3029 3070 3.064958 CGCTCAGTCGTCCTAACATTAGA 59.935 47.826 0.00 0.00 32.47 2.10
3030 3071 4.602995 GCTCAGTCGTCCTAACATTAGAG 58.397 47.826 0.00 0.00 32.47 2.43
3031 3072 4.335874 GCTCAGTCGTCCTAACATTAGAGA 59.664 45.833 0.00 0.00 32.47 3.10
3032 3073 5.009210 GCTCAGTCGTCCTAACATTAGAGAT 59.991 44.000 0.00 0.00 32.47 2.75
3033 3074 6.205076 GCTCAGTCGTCCTAACATTAGAGATA 59.795 42.308 0.00 0.00 32.47 1.98
3034 3075 7.255173 GCTCAGTCGTCCTAACATTAGAGATAA 60.255 40.741 0.00 0.00 32.47 1.75
3035 3076 8.693120 TCAGTCGTCCTAACATTAGAGATAAT 57.307 34.615 0.00 0.00 32.47 1.28
3036 3077 8.784994 TCAGTCGTCCTAACATTAGAGATAATC 58.215 37.037 0.00 0.00 32.47 1.75
3037 3078 8.568794 CAGTCGTCCTAACATTAGAGATAATCA 58.431 37.037 0.00 0.00 32.47 2.57
3038 3079 8.569641 AGTCGTCCTAACATTAGAGATAATCAC 58.430 37.037 0.00 0.00 32.47 3.06
3039 3080 7.534578 GTCGTCCTAACATTAGAGATAATCACG 59.465 40.741 0.00 0.00 32.47 4.35
3040 3081 6.802348 CGTCCTAACATTAGAGATAATCACGG 59.198 42.308 0.00 0.00 32.47 4.94
3041 3082 7.308408 CGTCCTAACATTAGAGATAATCACGGA 60.308 40.741 0.00 0.00 32.47 4.69
3042 3083 7.808856 GTCCTAACATTAGAGATAATCACGGAC 59.191 40.741 0.00 0.00 32.47 4.79
3043 3084 7.504574 TCCTAACATTAGAGATAATCACGGACA 59.495 37.037 0.00 0.00 32.47 4.02
3044 3085 7.595502 CCTAACATTAGAGATAATCACGGACAC 59.404 40.741 0.00 0.00 32.47 3.67
3045 3086 6.716934 ACATTAGAGATAATCACGGACACT 57.283 37.500 0.00 0.00 0.00 3.55
3046 3087 7.818997 ACATTAGAGATAATCACGGACACTA 57.181 36.000 0.00 0.00 0.00 2.74
3555 3596 5.551760 TTTCTTGATGGCGAAGAAAGATC 57.448 39.130 12.32 0.00 42.03 2.75
3556 3597 3.190079 TCTTGATGGCGAAGAAAGATCG 58.810 45.455 0.00 0.00 42.99 3.69
3557 3598 2.959507 TGATGGCGAAGAAAGATCGA 57.040 45.000 0.00 0.00 42.76 3.59
3558 3599 3.459232 TGATGGCGAAGAAAGATCGAT 57.541 42.857 0.00 0.00 42.76 3.59
3559 3600 3.384668 TGATGGCGAAGAAAGATCGATC 58.615 45.455 17.91 17.91 42.76 3.69
3560 3601 2.959507 TGGCGAAGAAAGATCGATCA 57.040 45.000 26.47 0.00 42.76 2.92
3561 3602 3.459232 TGGCGAAGAAAGATCGATCAT 57.541 42.857 26.47 13.02 42.76 2.45
3562 3603 4.584327 TGGCGAAGAAAGATCGATCATA 57.416 40.909 26.47 0.00 42.76 2.15
3563 3604 5.139435 TGGCGAAGAAAGATCGATCATAT 57.861 39.130 26.47 12.24 42.76 1.78
3564 3605 5.164233 TGGCGAAGAAAGATCGATCATATC 58.836 41.667 26.47 19.37 42.76 1.63
3565 3606 5.164233 GGCGAAGAAAGATCGATCATATCA 58.836 41.667 26.47 0.00 42.76 2.15
3566 3607 5.635280 GGCGAAGAAAGATCGATCATATCAA 59.365 40.000 26.47 0.00 42.76 2.57
3567 3608 6.146184 GGCGAAGAAAGATCGATCATATCAAA 59.854 38.462 26.47 0.00 42.76 2.69
3568 3609 7.006537 GCGAAGAAAGATCGATCATATCAAAC 58.993 38.462 26.47 13.82 42.76 2.93
3569 3610 7.216522 CGAAGAAAGATCGATCATATCAAACG 58.783 38.462 26.47 19.41 42.76 3.60
3570 3611 7.113544 CGAAGAAAGATCGATCATATCAAACGA 59.886 37.037 26.47 0.00 42.76 3.85
3969 4033 2.767445 CCGTGAGTCGCCATCGGTA 61.767 63.158 0.00 0.00 38.35 4.02
4024 4091 3.009723 CCGTGCTCAATTGTGGTATCTT 58.990 45.455 5.13 0.00 0.00 2.40
4176 4243 0.813821 GTTCCATTGCTCCTGGCTTC 59.186 55.000 0.00 0.00 42.39 3.86
4396 4463 3.009916 ACCTCAGAGCAATCAGTTTCCAT 59.990 43.478 0.00 0.00 0.00 3.41
4438 4505 3.985925 ACTTTACTAACTTTCGACAGGCG 59.014 43.478 3.23 0.00 42.69 5.52
4624 4694 5.793817 TCTGCTGCTTAGTTTGATTACAGA 58.206 37.500 0.00 0.00 0.00 3.41
4685 4755 0.391661 GATTTCGAGGCTCTGCACCA 60.392 55.000 13.50 0.00 0.00 4.17
5392 5783 7.759489 TCCTGTCATATATTGCCCAAATTAC 57.241 36.000 0.00 0.00 0.00 1.89
5432 5823 7.039853 TGTGTTTCCTGAGATTTGCAAATATCA 60.040 33.333 34.89 34.89 42.42 2.15
5916 6317 2.282745 GCAGCTGGTCCAGGCTTT 60.283 61.111 20.72 0.00 36.59 3.51
6074 6475 4.047059 TCCTCGTCGGCGGAACAC 62.047 66.667 10.62 0.00 38.89 3.32
6122 6523 4.415332 CGTCACCCACGTCCTCGG 62.415 72.222 0.00 0.00 44.07 4.63
6139 6540 3.148279 GTCGCCTCCGATGGGACT 61.148 66.667 11.94 0.00 46.38 3.85
6147 6548 1.688735 CTCCGATGGGACTATCAGCAA 59.311 52.381 0.00 0.00 37.43 3.91
6148 6549 1.412710 TCCGATGGGACTATCAGCAAC 59.587 52.381 0.00 0.00 37.43 4.17
6149 6550 1.138859 CCGATGGGACTATCAGCAACA 59.861 52.381 0.00 0.00 34.06 3.33
6150 6551 2.224378 CCGATGGGACTATCAGCAACAT 60.224 50.000 0.00 0.00 34.06 2.71
6151 6552 3.062763 CGATGGGACTATCAGCAACATC 58.937 50.000 0.00 0.00 0.00 3.06
6152 6553 2.602257 TGGGACTATCAGCAACATCG 57.398 50.000 0.00 0.00 0.00 3.84
6153 6554 2.107366 TGGGACTATCAGCAACATCGA 58.893 47.619 0.00 0.00 0.00 3.59
6154 6555 2.159099 TGGGACTATCAGCAACATCGAC 60.159 50.000 0.00 0.00 0.00 4.20
6155 6556 2.120232 GGACTATCAGCAACATCGACG 58.880 52.381 0.00 0.00 0.00 5.12
6156 6557 2.479730 GGACTATCAGCAACATCGACGT 60.480 50.000 0.00 0.00 0.00 4.34
6157 6558 2.784380 GACTATCAGCAACATCGACGTC 59.216 50.000 5.18 5.18 0.00 4.34
6158 6559 2.423892 ACTATCAGCAACATCGACGTCT 59.576 45.455 14.70 0.00 0.00 4.18
6159 6560 1.633561 ATCAGCAACATCGACGTCTG 58.366 50.000 14.70 8.66 0.00 3.51
6160 6561 1.008875 TCAGCAACATCGACGTCTGC 61.009 55.000 16.48 16.48 0.00 4.26
6161 6562 2.088763 AGCAACATCGACGTCTGCG 61.089 57.895 17.70 5.06 44.93 5.18
6162 6563 3.071459 GCAACATCGACGTCTGCGG 62.071 63.158 14.70 3.01 43.45 5.69
6163 6564 2.809601 AACATCGACGTCTGCGGC 60.810 61.111 14.70 0.00 44.04 6.53
6164 6565 4.796231 ACATCGACGTCTGCGGCC 62.796 66.667 14.70 0.00 44.82 6.13
6189 6590 3.541950 ATGCTGCTGCTGTCACCGT 62.542 57.895 17.00 0.00 40.48 4.83
6193 6594 1.439353 CTGCTGCTGTCACCGTGTTT 61.439 55.000 0.00 0.00 0.00 2.83
6232 6636 2.031516 CAGGCAGTTCCACAGCTCG 61.032 63.158 0.00 0.00 37.29 5.03
6241 6645 2.571757 CACAGCTCGAAGGCCGTA 59.428 61.111 0.00 0.00 39.75 4.02
6297 6701 1.552792 CAAGGAGGAGGAGAAGGTGTC 59.447 57.143 0.00 0.00 0.00 3.67
6348 6752 1.115467 GACTCCGTGTCCATCTCCAT 58.885 55.000 0.00 0.00 39.69 3.41
6349 6753 1.067821 GACTCCGTGTCCATCTCCATC 59.932 57.143 0.00 0.00 39.69 3.51
6354 6758 0.531532 GTGTCCATCTCCATCGCCAG 60.532 60.000 0.00 0.00 0.00 4.85
6363 6767 3.545481 CATCGCCAGTGTCGTCGC 61.545 66.667 0.00 0.00 0.00 5.19
6382 6786 1.745264 GGAGCCCAAGATCTCGGAG 59.255 63.158 0.00 0.00 0.00 4.63
6415 6822 2.419198 GAGGTGGCGAGCGATCAT 59.581 61.111 0.00 0.00 0.00 2.45
6417 6824 3.643978 GGTGGCGAGCGATCATGC 61.644 66.667 0.00 0.00 0.00 4.06
6423 6830 2.663188 GAGCGATCATGCCGTCCC 60.663 66.667 0.00 0.00 34.65 4.46
6447 6854 2.427410 CGGAAGCAACAGCAACGC 60.427 61.111 0.00 0.00 0.00 4.84
6450 6857 3.879351 GAAGCAACAGCAACGCCGG 62.879 63.158 0.00 0.00 0.00 6.13
6468 6881 3.069980 GCGTGGAGCCGAGTCAGAT 62.070 63.158 0.00 0.00 40.81 2.90
6470 6883 0.803768 CGTGGAGCCGAGTCAGATTG 60.804 60.000 0.00 0.00 0.00 2.67
6473 6886 0.809241 GGAGCCGAGTCAGATTGCTG 60.809 60.000 0.00 0.00 43.67 4.41
6480 6893 2.737679 CGAGTCAGATTGCTGCTGATCA 60.738 50.000 15.39 0.00 43.57 2.92
6538 6951 2.522060 CGCCATATCGGAGCAAGTC 58.478 57.895 0.00 0.00 36.56 3.01
6542 6955 1.067060 CCATATCGGAGCAAGTCGACA 59.933 52.381 19.50 0.00 38.25 4.35
6579 6992 3.560251 ACCGCAGCAAGTCCCTGT 61.560 61.111 0.00 0.00 32.93 4.00
6581 6994 2.743928 CGCAGCAAGTCCCTGTCC 60.744 66.667 0.00 0.00 32.93 4.02
6586 6999 2.529744 GCAAGTCCCTGTCCCACCT 61.530 63.158 0.00 0.00 0.00 4.00
6630 7043 2.808206 CCGCCATCTACCTCCACCC 61.808 68.421 0.00 0.00 0.00 4.61
6632 7045 2.822399 CCATCTACCTCCACCCGC 59.178 66.667 0.00 0.00 0.00 6.13
6633 7046 2.808206 CCATCTACCTCCACCCGCC 61.808 68.421 0.00 0.00 0.00 6.13
6634 7047 2.446036 ATCTACCTCCACCCGCCC 60.446 66.667 0.00 0.00 0.00 6.13
6660 7073 3.975591 ACTGGCAGGGCAGCATGT 61.976 61.111 20.34 1.37 39.31 3.21
6662 7075 1.822613 CTGGCAGGGCAGCATGTAG 60.823 63.158 6.61 0.00 39.31 2.74
6663 7076 3.214845 GGCAGGGCAGCATGTAGC 61.215 66.667 0.00 0.00 46.19 3.58
6724 7137 3.368571 GGGCTGCTGCACCTGAAC 61.369 66.667 17.89 0.00 41.91 3.18
6726 7139 2.641559 GCTGCTGCACCTGAACAC 59.358 61.111 11.11 0.00 39.41 3.32
6730 7143 1.174078 TGCTGCACCTGAACACCATG 61.174 55.000 0.00 0.00 0.00 3.66
6731 7144 1.582968 CTGCACCTGAACACCATGC 59.417 57.895 0.00 0.00 36.81 4.06
6734 7147 1.600636 CACCTGAACACCATGCCGT 60.601 57.895 0.00 0.00 0.00 5.68
6738 7151 0.321210 CTGAACACCATGCCGTACCA 60.321 55.000 0.00 0.00 0.00 3.25
6743 7156 2.189521 CCATGCCGTACCAGGACC 59.810 66.667 0.00 0.00 0.00 4.46
6823 11897 0.109723 GCTACAGGTGGTTCCCAACA 59.890 55.000 0.47 0.00 45.07 3.33
6833 11907 2.009882 TTCCCAACACACCAGGGGT 61.010 57.895 0.00 0.00 43.03 4.95
6925 11999 2.264794 GACCCGATTGACCACGCT 59.735 61.111 0.00 0.00 0.00 5.07
7219 12305 1.025812 TTTTCGGCGTGACCATTGTT 58.974 45.000 6.85 0.00 39.03 2.83
7228 12314 0.895100 TGACCATTGTTCAGCAGGCC 60.895 55.000 0.00 0.00 0.00 5.19
7559 12714 1.069090 ACAGTACTGCACACCCACG 59.931 57.895 22.90 0.00 0.00 4.94
7562 12717 1.671054 GTACTGCACACCCACGCAT 60.671 57.895 0.00 0.00 37.54 4.73
7598 12759 5.819379 TCATCTTGATCAGCATTGGAACTAC 59.181 40.000 0.00 0.00 0.00 2.73
7678 12840 1.718396 CTCAGACTGAATTGCGAGCA 58.282 50.000 6.61 0.00 0.00 4.26
7696 12858 5.284660 GCGAGCACAAAATCAAATACTCAAG 59.715 40.000 0.00 0.00 0.00 3.02
7697 12859 6.373779 CGAGCACAAAATCAAATACTCAAGT 58.626 36.000 0.00 0.00 0.00 3.16
7709 12871 7.732025 TCAAATACTCAAGTAACACCAGAGAA 58.268 34.615 0.00 0.00 33.76 2.87
7710 12872 8.208224 TCAAATACTCAAGTAACACCAGAGAAA 58.792 33.333 0.00 0.00 33.76 2.52
7711 12873 9.003658 CAAATACTCAAGTAACACCAGAGAAAT 57.996 33.333 0.00 0.00 33.76 2.17
7712 12874 8.553459 AATACTCAAGTAACACCAGAGAAATG 57.447 34.615 0.00 0.00 33.76 2.32
7713 12875 5.930135 ACTCAAGTAACACCAGAGAAATGT 58.070 37.500 0.00 0.00 0.00 2.71
7714 12876 7.062749 ACTCAAGTAACACCAGAGAAATGTA 57.937 36.000 0.00 0.00 0.00 2.29
7715 12877 7.155328 ACTCAAGTAACACCAGAGAAATGTAG 58.845 38.462 0.00 0.00 0.00 2.74
7716 12878 7.062749 TCAAGTAACACCAGAGAAATGTAGT 57.937 36.000 0.00 0.00 0.00 2.73
7717 12879 7.506114 TCAAGTAACACCAGAGAAATGTAGTT 58.494 34.615 0.00 0.00 0.00 2.24
7718 12880 7.990886 TCAAGTAACACCAGAGAAATGTAGTTT 59.009 33.333 0.00 0.00 0.00 2.66
7719 12881 8.621286 CAAGTAACACCAGAGAAATGTAGTTTT 58.379 33.333 0.00 0.00 0.00 2.43
7720 12882 8.154649 AGTAACACCAGAGAAATGTAGTTTTG 57.845 34.615 0.00 0.00 0.00 2.44
7721 12883 7.773690 AGTAACACCAGAGAAATGTAGTTTTGT 59.226 33.333 0.00 0.00 0.00 2.83
7722 12884 6.377327 ACACCAGAGAAATGTAGTTTTGTG 57.623 37.500 0.00 0.00 0.00 3.33
7723 12885 5.215160 CACCAGAGAAATGTAGTTTTGTGC 58.785 41.667 0.00 0.00 0.00 4.57
7724 12886 5.009010 CACCAGAGAAATGTAGTTTTGTGCT 59.991 40.000 0.00 0.00 0.00 4.40
7725 12887 5.594317 ACCAGAGAAATGTAGTTTTGTGCTT 59.406 36.000 0.00 0.00 0.00 3.91
7726 12888 6.770785 ACCAGAGAAATGTAGTTTTGTGCTTA 59.229 34.615 0.00 0.00 0.00 3.09
7727 12889 7.078228 CCAGAGAAATGTAGTTTTGTGCTTAC 58.922 38.462 0.00 0.00 0.00 2.34
7728 12890 7.255104 CCAGAGAAATGTAGTTTTGTGCTTACA 60.255 37.037 0.00 0.00 0.00 2.41
7729 12891 8.128582 CAGAGAAATGTAGTTTTGTGCTTACAA 58.871 33.333 0.00 0.00 0.00 2.41
7730 12892 8.682710 AGAGAAATGTAGTTTTGTGCTTACAAA 58.317 29.630 1.77 1.77 37.77 2.83
7731 12893 9.296400 GAGAAATGTAGTTTTGTGCTTACAAAA 57.704 29.630 12.71 12.71 44.35 2.44
7732 12894 9.301153 AGAAATGTAGTTTTGTGCTTACAAAAG 57.699 29.630 16.04 0.00 46.26 2.27
7733 12895 8.996024 AAATGTAGTTTTGTGCTTACAAAAGT 57.004 26.923 22.11 22.11 46.26 2.66
7734 12896 8.996024 AATGTAGTTTTGTGCTTACAAAAGTT 57.004 26.923 23.07 14.93 45.54 2.66
7735 12897 8.996024 ATGTAGTTTTGTGCTTACAAAAGTTT 57.004 26.923 23.07 13.17 45.54 2.66
7737 12899 9.562583 TGTAGTTTTGTGCTTACAAAAGTTTAG 57.437 29.630 23.07 0.00 45.54 1.85
7738 12900 9.563898 GTAGTTTTGTGCTTACAAAAGTTTAGT 57.436 29.630 23.07 8.41 45.54 2.24
7740 12902 9.135843 AGTTTTGTGCTTACAAAAGTTTAGTTC 57.864 29.630 16.04 5.09 45.54 3.01
7741 12903 9.135843 GTTTTGTGCTTACAAAAGTTTAGTTCT 57.864 29.630 16.04 0.00 46.26 3.01
7744 12906 9.997482 TTGTGCTTACAAAAGTTTAGTTCTAAG 57.003 29.630 0.00 0.00 34.99 2.18
7745 12907 9.386010 TGTGCTTACAAAAGTTTAGTTCTAAGA 57.614 29.630 0.00 0.00 34.99 2.10
7774 12936 3.548793 AAAAATCTGCACACCCCCA 57.451 47.368 0.00 0.00 0.00 4.96
7775 12937 1.047801 AAAAATCTGCACACCCCCAC 58.952 50.000 0.00 0.00 0.00 4.61
7776 12938 0.105760 AAAATCTGCACACCCCCACA 60.106 50.000 0.00 0.00 0.00 4.17
7777 12939 0.827507 AAATCTGCACACCCCCACAC 60.828 55.000 0.00 0.00 0.00 3.82
7778 12940 2.005606 AATCTGCACACCCCCACACA 62.006 55.000 0.00 0.00 0.00 3.72
7779 12941 2.697147 ATCTGCACACCCCCACACAC 62.697 60.000 0.00 0.00 0.00 3.82
7780 12942 3.712771 CTGCACACCCCCACACACA 62.713 63.158 0.00 0.00 0.00 3.72
7781 12943 3.216292 GCACACCCCCACACACAC 61.216 66.667 0.00 0.00 0.00 3.82
7782 12944 2.273776 CACACCCCCACACACACA 59.726 61.111 0.00 0.00 0.00 3.72
7783 12945 1.823470 CACACCCCCACACACACAG 60.823 63.158 0.00 0.00 0.00 3.66
7784 12946 2.906897 CACCCCCACACACACAGC 60.907 66.667 0.00 0.00 0.00 4.40
7785 12947 3.415983 ACCCCCACACACACAGCA 61.416 61.111 0.00 0.00 0.00 4.41
7786 12948 2.906897 CCCCCACACACACAGCAC 60.907 66.667 0.00 0.00 0.00 4.40
7787 12949 3.279116 CCCCACACACACAGCACG 61.279 66.667 0.00 0.00 0.00 5.34
7788 12950 3.952675 CCCACACACACAGCACGC 61.953 66.667 0.00 0.00 0.00 5.34
7789 12951 3.201297 CCACACACACAGCACGCA 61.201 61.111 0.00 0.00 0.00 5.24
7790 12952 2.023181 CACACACACAGCACGCAC 59.977 61.111 0.00 0.00 0.00 5.34
7791 12953 2.125147 ACACACACAGCACGCACT 60.125 55.556 0.00 0.00 0.00 4.40
7792 12954 1.142965 ACACACACAGCACGCACTA 59.857 52.632 0.00 0.00 0.00 2.74
7793 12955 1.151777 ACACACACAGCACGCACTAC 61.152 55.000 0.00 0.00 0.00 2.73
7794 12956 1.594293 ACACACAGCACGCACTACC 60.594 57.895 0.00 0.00 0.00 3.18
7795 12957 1.594021 CACACAGCACGCACTACCA 60.594 57.895 0.00 0.00 0.00 3.25
7796 12958 0.950555 CACACAGCACGCACTACCAT 60.951 55.000 0.00 0.00 0.00 3.55
7797 12959 0.250295 ACACAGCACGCACTACCATT 60.250 50.000 0.00 0.00 0.00 3.16
7798 12960 1.001520 ACACAGCACGCACTACCATTA 59.998 47.619 0.00 0.00 0.00 1.90
7799 12961 1.393539 CACAGCACGCACTACCATTAC 59.606 52.381 0.00 0.00 0.00 1.89
7800 12962 0.645355 CAGCACGCACTACCATTACG 59.355 55.000 0.00 0.00 0.00 3.18
7801 12963 0.245539 AGCACGCACTACCATTACGT 59.754 50.000 0.00 0.00 37.47 3.57
7802 12964 1.473677 AGCACGCACTACCATTACGTA 59.526 47.619 0.00 0.00 34.79 3.57
7803 12965 1.850441 GCACGCACTACCATTACGTAG 59.150 52.381 0.00 0.00 41.32 3.51
7804 12966 2.478370 GCACGCACTACCATTACGTAGA 60.478 50.000 0.00 0.00 38.41 2.59
7805 12967 3.103738 CACGCACTACCATTACGTAGAC 58.896 50.000 0.00 0.00 38.41 2.59
7806 12968 2.749076 ACGCACTACCATTACGTAGACA 59.251 45.455 0.00 0.00 38.41 3.41
7807 12969 3.103738 CGCACTACCATTACGTAGACAC 58.896 50.000 0.00 0.00 38.41 3.67
7808 12970 3.426560 CGCACTACCATTACGTAGACACA 60.427 47.826 0.00 0.00 38.41 3.72
7809 12971 4.103357 GCACTACCATTACGTAGACACAG 58.897 47.826 0.00 0.00 38.41 3.66
7810 12972 4.142534 GCACTACCATTACGTAGACACAGA 60.143 45.833 0.00 0.00 38.41 3.41
7811 12973 5.570344 CACTACCATTACGTAGACACAGAG 58.430 45.833 0.00 0.00 38.41 3.35
7812 12974 5.123502 CACTACCATTACGTAGACACAGAGT 59.876 44.000 0.00 0.00 38.41 3.24
7821 12983 3.615099 GACACAGAGTCTAGCGCTC 57.385 57.895 16.34 0.00 44.09 5.03
7822 12984 0.099791 GACACAGAGTCTAGCGCTCC 59.900 60.000 16.34 2.78 44.09 4.70
7823 12985 1.316706 ACACAGAGTCTAGCGCTCCC 61.317 60.000 16.34 2.33 33.69 4.30
7824 12986 1.034838 CACAGAGTCTAGCGCTCCCT 61.035 60.000 16.34 8.37 33.69 4.20
7825 12987 0.323908 ACAGAGTCTAGCGCTCCCTT 60.324 55.000 16.34 0.00 33.69 3.95
7826 12988 0.102120 CAGAGTCTAGCGCTCCCTTG 59.898 60.000 16.34 2.35 33.69 3.61
7827 12989 0.033991 AGAGTCTAGCGCTCCCTTGA 60.034 55.000 16.34 2.76 33.69 3.02
7828 12990 0.101579 GAGTCTAGCGCTCCCTTGAC 59.898 60.000 16.34 15.39 37.70 3.18
7829 12991 0.612174 AGTCTAGCGCTCCCTTGACA 60.612 55.000 16.34 0.00 39.16 3.58
7830 12992 0.458716 GTCTAGCGCTCCCTTGACAC 60.459 60.000 16.34 0.00 37.48 3.67
7831 12993 0.898326 TCTAGCGCTCCCTTGACACA 60.898 55.000 16.34 0.00 0.00 3.72
7832 12994 0.737715 CTAGCGCTCCCTTGACACAC 60.738 60.000 16.34 0.00 0.00 3.82
7833 12995 2.167398 TAGCGCTCCCTTGACACACC 62.167 60.000 16.34 0.00 0.00 4.16
7834 12996 2.425592 CGCTCCCTTGACACACCA 59.574 61.111 0.00 0.00 0.00 4.17
7835 12997 1.669115 CGCTCCCTTGACACACCAG 60.669 63.158 0.00 0.00 0.00 4.00
7836 12998 1.451936 GCTCCCTTGACACACCAGT 59.548 57.895 0.00 0.00 0.00 4.00
7837 12999 0.685097 GCTCCCTTGACACACCAGTA 59.315 55.000 0.00 0.00 0.00 2.74
7838 13000 1.279271 GCTCCCTTGACACACCAGTAT 59.721 52.381 0.00 0.00 0.00 2.12
7839 13001 2.936993 GCTCCCTTGACACACCAGTATG 60.937 54.545 0.00 0.00 0.00 2.39
7840 13002 2.303022 CTCCCTTGACACACCAGTATGT 59.697 50.000 0.00 0.00 0.00 2.29
7841 13003 2.708861 TCCCTTGACACACCAGTATGTT 59.291 45.455 0.00 0.00 0.00 2.71
7842 13004 3.904965 TCCCTTGACACACCAGTATGTTA 59.095 43.478 0.00 0.00 0.00 2.41
7843 13005 4.020573 TCCCTTGACACACCAGTATGTTAG 60.021 45.833 0.00 0.00 0.00 2.34
7844 13006 4.020573 CCCTTGACACACCAGTATGTTAGA 60.021 45.833 0.00 0.00 0.00 2.10
7845 13007 5.338381 CCCTTGACACACCAGTATGTTAGAT 60.338 44.000 0.00 0.00 0.00 1.98
7852 13014 8.484214 ACACACCAGTATGTTAGATCATCTAT 57.516 34.615 0.00 0.00 0.00 1.98
7853 13015 8.363390 ACACACCAGTATGTTAGATCATCTATG 58.637 37.037 0.00 0.00 0.00 2.23
7857 13019 6.038985 CAGTATGTTAGATCATCTATGGCCG 58.961 44.000 0.00 0.00 0.00 6.13
7868 13030 2.421877 CTATGGCCGCGGTCACCTAG 62.422 65.000 38.14 28.75 30.16 3.02
7882 13044 5.273674 GTCACCTAGTTTGACCCCTATAC 57.726 47.826 9.61 0.00 37.93 1.47
7886 13048 0.835276 AGTTTGACCCCTATACGCCC 59.165 55.000 0.00 0.00 0.00 6.13
7887 13049 0.179037 GTTTGACCCCTATACGCCCC 60.179 60.000 0.00 0.00 0.00 5.80
7888 13050 0.620990 TTTGACCCCTATACGCCCCA 60.621 55.000 0.00 0.00 0.00 4.96
7889 13051 1.339644 TTGACCCCTATACGCCCCAC 61.340 60.000 0.00 0.00 0.00 4.61
7940 13102 3.433615 GTCGGACCTCATTTCTTCTGTTG 59.566 47.826 0.00 0.00 0.00 3.33
7948 13110 1.761449 TTTCTTCTGTTGCACAGCCA 58.239 45.000 10.36 1.49 45.54 4.75
7961 13123 2.038952 GCACAGCCACATCCCTCATATA 59.961 50.000 0.00 0.00 0.00 0.86
7990 13152 4.469227 TCCCAAATCCATACAAAACCATGG 59.531 41.667 11.19 11.19 42.67 3.66
8018 13180 4.091509 GGTGTTTCTACGTACTTGAGCATG 59.908 45.833 0.00 0.00 0.00 4.06
8037 13199 0.242017 GGAACACAGCAATCTGGCAC 59.758 55.000 0.00 0.00 44.54 5.01
8081 13243 1.717194 TACAAAAGATGTCGGCCGAC 58.283 50.000 43.88 43.88 42.70 4.79
8098 13260 3.861131 GCCGACTTCATCACTTACAGTGT 60.861 47.826 0.00 0.00 46.03 3.55
8103 13709 3.319137 TCATCACTTACAGTGTGAGCC 57.681 47.619 14.58 0.00 46.03 4.70
8110 13716 1.456296 TACAGTGTGAGCCGATACGT 58.544 50.000 5.88 0.00 0.00 3.57
8131 13737 4.767255 GCCCACGGACTCAGGCTG 62.767 72.222 8.58 8.58 42.34 4.85
8132 13738 4.767255 CCCACGGACTCAGGCTGC 62.767 72.222 10.34 0.00 0.00 5.25
8137 13743 2.032681 GGACTCAGGCTGCGGTTT 59.967 61.111 10.34 0.00 0.00 3.27
8138 13744 2.035442 GGACTCAGGCTGCGGTTTC 61.035 63.158 10.34 0.00 0.00 2.78
8156 13762 3.532155 GCCGGCAACAACACCCAA 61.532 61.111 24.80 0.00 0.00 4.12
8157 13763 2.866726 GCCGGCAACAACACCCAAT 61.867 57.895 24.80 0.00 0.00 3.16
8161 13767 1.664333 GCAACAACACCCAATGGCG 60.664 57.895 0.00 0.00 33.59 5.69
8162 13768 1.739049 CAACAACACCCAATGGCGT 59.261 52.632 0.00 0.00 33.59 5.68
8230 13836 2.915659 AAGGGAGCGTGTCGGACA 60.916 61.111 6.76 6.76 0.00 4.02
8233 13839 2.338984 GGAGCGTGTCGGACAAGT 59.661 61.111 21.90 11.14 30.18 3.16
8245 13851 2.360350 ACAAGTGCAGGGCATCGG 60.360 61.111 0.00 0.00 41.91 4.18
8295 13901 4.698625 ACGCCCCGGAAGAGGAGT 62.699 66.667 0.73 0.00 0.00 3.85
8297 13903 2.056223 CGCCCCGGAAGAGGAGTTA 61.056 63.158 0.73 0.00 0.00 2.24
8309 13915 2.027169 GAGTTACCGCCCCGATCG 59.973 66.667 8.51 8.51 0.00 3.69
8323 13929 4.498520 ATCGAGCAGTGACCGGCG 62.499 66.667 0.00 0.00 36.83 6.46
8428 14035 0.242825 TCGGATTCACTGTCGGACAC 59.757 55.000 6.76 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 0.470080 GGATCTCATCCGGGACTCCA 60.470 60.000 0.00 0.00 40.13 3.86
136 137 1.533469 CCGGAACTCCTCCTGACGTT 61.533 60.000 0.00 0.00 42.85 3.99
143 144 0.178301 GACCATTCCGGAACTCCTCC 59.822 60.000 21.56 3.20 41.40 4.30
295 297 1.839994 CTTTCCACTCTAGGCCCATGA 59.160 52.381 0.00 0.00 0.00 3.07
344 346 2.772924 CTTGGGCAAGGGTGGGAT 59.227 61.111 0.00 0.00 34.87 3.85
458 460 2.544768 CCTAGATGGGACTTGGGGG 58.455 63.158 0.00 0.00 0.00 5.40
487 489 0.549413 GGTTTCCACTCCTAGGGGGT 60.549 60.000 14.80 8.04 39.97 4.95
497 500 0.845102 CCCCCACCTAGGTTTCCACT 60.845 60.000 13.15 0.00 34.66 4.00
568 571 5.251764 CCAACAGGAGAAGAAACTCATCAT 58.748 41.667 0.00 0.00 38.51 2.45
569 572 4.645535 CCAACAGGAGAAGAAACTCATCA 58.354 43.478 0.00 0.00 38.51 3.07
570 573 3.438434 GCCAACAGGAGAAGAAACTCATC 59.562 47.826 0.00 0.00 38.51 2.92
750 753 0.320073 CACACGTACAACCCGGTGAT 60.320 55.000 0.00 0.00 32.13 3.06
759 762 0.298115 CGCGTTCAACACACGTACAA 59.702 50.000 0.00 0.00 39.92 2.41
934 937 3.928727 TTCCTACGTGTCACGAAGATT 57.071 42.857 30.95 11.32 46.05 2.40
1028 1031 1.443194 CGACGGTTCCGACAACGAT 60.443 57.895 18.28 0.00 42.66 3.73
1161 1164 1.819208 CCGGCTCCGCATTGATTGA 60.819 57.895 2.18 0.00 38.24 2.57
1162 1165 1.779025 CTCCGGCTCCGCATTGATTG 61.779 60.000 0.00 0.00 38.24 2.67
1163 1166 1.524621 CTCCGGCTCCGCATTGATT 60.525 57.895 0.00 0.00 38.24 2.57
1164 1167 2.109799 CTCCGGCTCCGCATTGAT 59.890 61.111 0.00 0.00 38.24 2.57
1214 1217 1.033746 TACGACGGCGGAGAAGGAAT 61.034 55.000 18.49 0.00 43.17 3.01
1215 1218 1.243342 TTACGACGGCGGAGAAGGAA 61.243 55.000 18.49 0.00 43.17 3.36
1675 1682 8.542132 GCATAAATTACCATGTAATTTGCACAG 58.458 33.333 24.59 14.92 37.59 3.66
1769 1777 8.261522 TCACTAAGTTGTGCATGTATTACCATA 58.738 33.333 0.00 0.00 37.81 2.74
2180 2192 3.791993 TGTTTACACACGAATTACCGC 57.208 42.857 0.00 0.00 0.00 5.68
2266 2301 7.640597 TCTTCGAAACTAGATCCTATGTTGA 57.359 36.000 0.00 0.00 0.00 3.18
2512 2548 7.614192 AGTTGTTTTCATAGAAAATACCCGGAT 59.386 33.333 0.73 0.00 0.00 4.18
2516 2552 8.364894 ACCAAGTTGTTTTCATAGAAAATACCC 58.635 33.333 8.02 0.70 0.00 3.69
2755 2796 6.707440 TGCAGGAAAAAGACAAAACTGATA 57.293 33.333 0.00 0.00 0.00 2.15
2805 2846 9.467258 GATTCTTTTTCAAAACTGATGATGTCA 57.533 29.630 0.00 0.00 35.05 3.58
2807 2848 9.472361 CAGATTCTTTTTCAAAACTGATGATGT 57.528 29.630 0.00 0.00 0.00 3.06
2808 2849 8.433126 GCAGATTCTTTTTCAAAACTGATGATG 58.567 33.333 0.00 0.00 0.00 3.07
2810 2851 7.650504 CAGCAGATTCTTTTTCAAAACTGATGA 59.349 33.333 9.08 0.00 37.09 2.92
2812 2853 7.650903 GTCAGCAGATTCTTTTTCAAAACTGAT 59.349 33.333 0.00 0.00 32.51 2.90
2814 2855 6.753279 TGTCAGCAGATTCTTTTTCAAAACTG 59.247 34.615 0.00 0.00 0.00 3.16
2816 2857 6.019559 GGTGTCAGCAGATTCTTTTTCAAAAC 60.020 38.462 0.00 0.00 0.00 2.43
2817 2858 6.042143 GGTGTCAGCAGATTCTTTTTCAAAA 58.958 36.000 0.00 0.00 0.00 2.44
2818 2859 5.591099 GGTGTCAGCAGATTCTTTTTCAAA 58.409 37.500 0.00 0.00 0.00 2.69
2819 2860 4.261155 CGGTGTCAGCAGATTCTTTTTCAA 60.261 41.667 2.47 0.00 0.00 2.69
2820 2861 3.250762 CGGTGTCAGCAGATTCTTTTTCA 59.749 43.478 2.47 0.00 0.00 2.69
2821 2862 3.814945 CGGTGTCAGCAGATTCTTTTTC 58.185 45.455 2.47 0.00 0.00 2.29
2822 2863 2.030805 GCGGTGTCAGCAGATTCTTTTT 60.031 45.455 2.47 0.00 34.19 1.94
2823 2864 1.537202 GCGGTGTCAGCAGATTCTTTT 59.463 47.619 2.47 0.00 34.19 2.27
2824 2865 1.160137 GCGGTGTCAGCAGATTCTTT 58.840 50.000 2.47 0.00 34.19 2.52
2825 2866 0.035317 TGCGGTGTCAGCAGATTCTT 59.965 50.000 2.47 0.00 40.01 2.52
2826 2867 0.035317 TTGCGGTGTCAGCAGATTCT 59.965 50.000 2.47 0.00 46.01 2.40
2827 2868 0.874390 TTTGCGGTGTCAGCAGATTC 59.126 50.000 2.47 0.00 46.01 2.52
2828 2869 1.317613 TTTTGCGGTGTCAGCAGATT 58.682 45.000 2.47 0.00 46.01 2.40
2829 2870 1.317613 TTTTTGCGGTGTCAGCAGAT 58.682 45.000 2.47 0.00 46.01 2.90
2830 2871 1.317613 ATTTTTGCGGTGTCAGCAGA 58.682 45.000 2.47 0.00 46.01 4.26
2831 2872 2.987413 TATTTTTGCGGTGTCAGCAG 57.013 45.000 2.47 0.00 46.01 4.24
2832 2873 3.717400 TTTATTTTTGCGGTGTCAGCA 57.283 38.095 2.47 0.00 43.59 4.41
2833 2874 5.631512 TGTATTTTATTTTTGCGGTGTCAGC 59.368 36.000 0.00 0.00 0.00 4.26
2834 2875 7.630470 TTGTATTTTATTTTTGCGGTGTCAG 57.370 32.000 0.00 0.00 0.00 3.51
2835 2876 7.491372 TGTTTGTATTTTATTTTTGCGGTGTCA 59.509 29.630 0.00 0.00 0.00 3.58
2849 2890 6.870971 AGCTTCCGAGTTGTTTGTATTTTA 57.129 33.333 0.00 0.00 0.00 1.52
2887 2928 9.244799 GATCATAATAACATATCCGAACGCATA 57.755 33.333 0.00 0.00 0.00 3.14
2943 2984 7.013274 TGCTATCTATCCTTGCAACATAAAACC 59.987 37.037 0.00 0.00 0.00 3.27
2944 2985 7.857885 GTGCTATCTATCCTTGCAACATAAAAC 59.142 37.037 0.00 0.00 35.34 2.43
2945 2986 7.254761 CGTGCTATCTATCCTTGCAACATAAAA 60.255 37.037 0.00 0.00 35.34 1.52
2946 2987 6.202762 CGTGCTATCTATCCTTGCAACATAAA 59.797 38.462 0.00 0.00 35.34 1.40
2947 2988 5.696270 CGTGCTATCTATCCTTGCAACATAA 59.304 40.000 0.00 0.00 35.34 1.90
2948 2989 5.010617 TCGTGCTATCTATCCTTGCAACATA 59.989 40.000 0.00 0.00 35.34 2.29
2949 2990 4.060900 CGTGCTATCTATCCTTGCAACAT 58.939 43.478 0.00 0.00 35.34 2.71
2950 2991 3.132111 TCGTGCTATCTATCCTTGCAACA 59.868 43.478 0.00 0.00 35.34 3.33
2951 2992 3.491267 GTCGTGCTATCTATCCTTGCAAC 59.509 47.826 0.00 0.00 35.34 4.17
2952 2993 3.132111 TGTCGTGCTATCTATCCTTGCAA 59.868 43.478 0.00 0.00 35.34 4.08
2953 2994 2.693074 TGTCGTGCTATCTATCCTTGCA 59.307 45.455 0.00 0.00 0.00 4.08
2954 2995 3.371102 TGTCGTGCTATCTATCCTTGC 57.629 47.619 0.00 0.00 0.00 4.01
2955 2996 6.851222 AATTTGTCGTGCTATCTATCCTTG 57.149 37.500 0.00 0.00 0.00 3.61
2956 2997 7.552687 TGAAAATTTGTCGTGCTATCTATCCTT 59.447 33.333 0.00 0.00 0.00 3.36
2957 2998 7.011482 GTGAAAATTTGTCGTGCTATCTATCCT 59.989 37.037 0.00 0.00 0.00 3.24
2958 2999 7.126398 GTGAAAATTTGTCGTGCTATCTATCC 58.874 38.462 0.00 0.00 0.00 2.59
2959 3000 6.841286 CGTGAAAATTTGTCGTGCTATCTATC 59.159 38.462 0.00 0.00 0.00 2.08
2960 3001 6.312918 ACGTGAAAATTTGTCGTGCTATCTAT 59.687 34.615 12.39 0.00 33.55 1.98
2961 3002 5.636121 ACGTGAAAATTTGTCGTGCTATCTA 59.364 36.000 12.39 0.00 33.55 1.98
2962 3003 4.451096 ACGTGAAAATTTGTCGTGCTATCT 59.549 37.500 12.39 0.00 33.55 1.98
2963 3004 4.708601 ACGTGAAAATTTGTCGTGCTATC 58.291 39.130 12.39 0.00 33.55 2.08
2964 3005 4.742438 ACGTGAAAATTTGTCGTGCTAT 57.258 36.364 12.39 0.00 33.55 2.97
2965 3006 4.539509 AACGTGAAAATTTGTCGTGCTA 57.460 36.364 13.41 0.00 35.00 3.49
2966 3007 3.414549 AACGTGAAAATTTGTCGTGCT 57.585 38.095 13.41 1.04 35.00 4.40
2967 3008 5.228427 ACTTTAACGTGAAAATTTGTCGTGC 59.772 36.000 13.41 0.00 35.00 5.34
2968 3009 6.784068 ACTTTAACGTGAAAATTTGTCGTG 57.216 33.333 13.41 6.50 35.00 4.35
2969 3010 7.961827 TGTAACTTTAACGTGAAAATTTGTCGT 59.038 29.630 0.00 8.88 36.31 4.34
2970 3011 8.313113 TGTAACTTTAACGTGAAAATTTGTCG 57.687 30.769 0.00 0.02 0.00 4.35
2972 3013 8.536407 GCATGTAACTTTAACGTGAAAATTTGT 58.464 29.630 0.00 0.00 36.20 2.83
2973 3014 8.535592 TGCATGTAACTTTAACGTGAAAATTTG 58.464 29.630 0.00 0.00 36.20 2.32
2974 3015 8.635877 TGCATGTAACTTTAACGTGAAAATTT 57.364 26.923 0.00 1.71 36.20 1.82
2975 3016 8.536407 GTTGCATGTAACTTTAACGTGAAAATT 58.464 29.630 18.20 0.00 34.03 1.82
2976 3017 7.096803 CGTTGCATGTAACTTTAACGTGAAAAT 60.097 33.333 21.95 0.00 34.03 1.82
2977 3018 6.194876 CGTTGCATGTAACTTTAACGTGAAAA 59.805 34.615 21.95 0.00 34.03 2.29
2978 3019 5.677612 CGTTGCATGTAACTTTAACGTGAAA 59.322 36.000 21.95 0.00 36.20 2.69
2979 3020 5.199000 CGTTGCATGTAACTTTAACGTGAA 58.801 37.500 21.95 0.00 36.20 3.18
2980 3021 4.763874 CGTTGCATGTAACTTTAACGTGA 58.236 39.130 21.95 0.00 36.20 4.35
2982 3023 4.799419 ACGTTGCATGTAACTTTAACGT 57.201 36.364 21.95 13.07 46.04 3.99
2983 3024 6.183359 CGTTTACGTTGCATGTAACTTTAACG 60.183 38.462 28.17 28.17 44.35 3.18
2984 3025 6.396761 GCGTTTACGTTGCATGTAACTTTAAC 60.397 38.462 21.95 19.96 42.22 2.01
2985 3026 5.620417 GCGTTTACGTTGCATGTAACTTTAA 59.380 36.000 21.95 15.98 42.22 1.52
2986 3027 5.050227 AGCGTTTACGTTGCATGTAACTTTA 60.050 36.000 21.95 11.64 42.22 1.85
2987 3028 3.969981 GCGTTTACGTTGCATGTAACTTT 59.030 39.130 21.95 12.52 42.22 2.66
2988 3029 3.249080 AGCGTTTACGTTGCATGTAACTT 59.751 39.130 21.95 16.30 42.22 2.66
2989 3030 2.803956 AGCGTTTACGTTGCATGTAACT 59.196 40.909 21.95 12.70 42.22 2.24
2990 3031 3.150731 GAGCGTTTACGTTGCATGTAAC 58.849 45.455 15.87 15.87 42.22 2.50
2991 3032 2.801111 TGAGCGTTTACGTTGCATGTAA 59.199 40.909 0.00 7.71 42.22 2.41
2992 3033 2.405172 TGAGCGTTTACGTTGCATGTA 58.595 42.857 0.00 0.00 42.22 2.29
2993 3034 1.194547 CTGAGCGTTTACGTTGCATGT 59.805 47.619 0.00 0.00 42.22 3.21
2994 3035 1.194547 ACTGAGCGTTTACGTTGCATG 59.805 47.619 0.00 0.00 42.22 4.06
2995 3036 1.459592 GACTGAGCGTTTACGTTGCAT 59.540 47.619 0.00 0.00 42.22 3.96
2996 3037 0.856641 GACTGAGCGTTTACGTTGCA 59.143 50.000 0.00 0.00 42.22 4.08
2997 3038 0.179282 CGACTGAGCGTTTACGTTGC 60.179 55.000 0.00 0.00 42.22 4.17
2998 3039 1.121967 GACGACTGAGCGTTTACGTTG 59.878 52.381 0.00 0.00 45.72 4.10
2999 3040 1.402511 GACGACTGAGCGTTTACGTT 58.597 50.000 0.00 0.00 45.72 3.99
3000 3041 0.386478 GGACGACTGAGCGTTTACGT 60.386 55.000 4.05 0.00 45.72 3.57
3001 3042 0.109873 AGGACGACTGAGCGTTTACG 60.110 55.000 3.70 0.00 45.72 3.18
3002 3043 2.907910 TAGGACGACTGAGCGTTTAC 57.092 50.000 3.70 0.00 45.72 2.01
3003 3044 2.553602 TGTTAGGACGACTGAGCGTTTA 59.446 45.455 3.70 0.00 45.72 2.01
3004 3045 1.338973 TGTTAGGACGACTGAGCGTTT 59.661 47.619 3.70 0.00 45.72 3.60
3005 3046 0.956633 TGTTAGGACGACTGAGCGTT 59.043 50.000 3.70 0.00 45.72 4.84
3007 3048 2.279582 AATGTTAGGACGACTGAGCG 57.720 50.000 0.00 0.00 37.29 5.03
3008 3049 4.335874 TCTCTAATGTTAGGACGACTGAGC 59.664 45.833 0.00 0.00 0.00 4.26
3009 3050 6.627395 ATCTCTAATGTTAGGACGACTGAG 57.373 41.667 0.00 0.00 0.00 3.35
3010 3051 8.693120 ATTATCTCTAATGTTAGGACGACTGA 57.307 34.615 0.00 0.00 0.00 3.41
3011 3052 8.568794 TGATTATCTCTAATGTTAGGACGACTG 58.431 37.037 0.00 0.00 0.00 3.51
3012 3053 8.569641 GTGATTATCTCTAATGTTAGGACGACT 58.430 37.037 0.00 0.00 0.00 4.18
3013 3054 7.534578 CGTGATTATCTCTAATGTTAGGACGAC 59.465 40.741 0.00 0.00 0.00 4.34
3014 3055 7.308408 CCGTGATTATCTCTAATGTTAGGACGA 60.308 40.741 0.00 0.00 0.00 4.20
3015 3056 6.802348 CCGTGATTATCTCTAATGTTAGGACG 59.198 42.308 0.32 0.00 0.00 4.79
3016 3057 7.808856 GTCCGTGATTATCTCTAATGTTAGGAC 59.191 40.741 0.32 0.00 32.88 3.85
3017 3058 7.504574 TGTCCGTGATTATCTCTAATGTTAGGA 59.495 37.037 0.32 0.00 0.00 2.94
3018 3059 7.595502 GTGTCCGTGATTATCTCTAATGTTAGG 59.404 40.741 0.32 0.00 0.00 2.69
3019 3060 8.353684 AGTGTCCGTGATTATCTCTAATGTTAG 58.646 37.037 0.00 0.00 0.00 2.34
3020 3061 8.234136 AGTGTCCGTGATTATCTCTAATGTTA 57.766 34.615 0.00 0.00 0.00 2.41
3021 3062 7.113658 AGTGTCCGTGATTATCTCTAATGTT 57.886 36.000 0.00 0.00 0.00 2.71
3022 3063 6.716934 AGTGTCCGTGATTATCTCTAATGT 57.283 37.500 0.00 0.00 0.00 2.71
3533 3574 4.093408 CGATCTTTCTTCGCCATCAAGAAA 59.907 41.667 8.24 8.24 44.12 2.52
3534 3575 3.618594 CGATCTTTCTTCGCCATCAAGAA 59.381 43.478 0.00 0.00 37.96 2.52
3535 3576 3.119137 TCGATCTTTCTTCGCCATCAAGA 60.119 43.478 0.00 0.00 36.56 3.02
3536 3577 3.190079 TCGATCTTTCTTCGCCATCAAG 58.810 45.455 0.00 0.00 36.56 3.02
3537 3578 3.245518 TCGATCTTTCTTCGCCATCAA 57.754 42.857 0.00 0.00 36.56 2.57
3538 3579 2.959507 TCGATCTTTCTTCGCCATCA 57.040 45.000 0.00 0.00 36.56 3.07
3539 3580 3.384668 TGATCGATCTTTCTTCGCCATC 58.615 45.455 25.02 0.00 36.56 3.51
3540 3581 3.459232 TGATCGATCTTTCTTCGCCAT 57.541 42.857 25.02 0.00 36.56 4.40
3541 3582 2.959507 TGATCGATCTTTCTTCGCCA 57.040 45.000 25.02 0.00 36.56 5.69
3542 3583 5.164233 TGATATGATCGATCTTTCTTCGCC 58.836 41.667 25.02 6.53 36.56 5.54
3543 3584 6.696825 TTGATATGATCGATCTTTCTTCGC 57.303 37.500 25.02 8.00 36.56 4.70
3544 3585 7.113544 TCGTTTGATATGATCGATCTTTCTTCG 59.886 37.037 25.02 18.04 37.94 3.79
3545 3586 8.286996 TCGTTTGATATGATCGATCTTTCTTC 57.713 34.615 25.02 15.81 0.00 2.87
3546 3587 8.138074 TCTCGTTTGATATGATCGATCTTTCTT 58.862 33.333 25.02 8.50 0.00 2.52
3547 3588 7.652727 TCTCGTTTGATATGATCGATCTTTCT 58.347 34.615 25.02 10.60 0.00 2.52
3548 3589 7.593273 ACTCTCGTTTGATATGATCGATCTTTC 59.407 37.037 25.02 18.00 0.00 2.62
3549 3590 7.380870 CACTCTCGTTTGATATGATCGATCTTT 59.619 37.037 25.02 15.20 0.00 2.52
3550 3591 6.860539 CACTCTCGTTTGATATGATCGATCTT 59.139 38.462 25.02 20.81 0.00 2.40
3551 3592 6.205658 TCACTCTCGTTTGATATGATCGATCT 59.794 38.462 25.02 13.51 0.00 2.75
3552 3593 6.374578 TCACTCTCGTTTGATATGATCGATC 58.625 40.000 18.72 18.72 0.00 3.69
3553 3594 6.319141 TCACTCTCGTTTGATATGATCGAT 57.681 37.500 0.00 0.00 0.00 3.59
3554 3595 5.751243 TCACTCTCGTTTGATATGATCGA 57.249 39.130 0.00 0.00 0.00 3.59
3555 3596 6.999956 ATTCACTCTCGTTTGATATGATCG 57.000 37.500 0.00 0.00 0.00 3.69
3556 3597 7.068341 GCAATTCACTCTCGTTTGATATGATC 58.932 38.462 0.00 0.00 0.00 2.92
3557 3598 6.539826 TGCAATTCACTCTCGTTTGATATGAT 59.460 34.615 0.00 0.00 0.00 2.45
3558 3599 5.874261 TGCAATTCACTCTCGTTTGATATGA 59.126 36.000 0.00 0.00 0.00 2.15
3559 3600 5.961843 GTGCAATTCACTCTCGTTTGATATG 59.038 40.000 0.00 0.00 42.38 1.78
3560 3601 5.643348 TGTGCAATTCACTCTCGTTTGATAT 59.357 36.000 0.00 0.00 45.81 1.63
3561 3602 4.994217 TGTGCAATTCACTCTCGTTTGATA 59.006 37.500 0.00 0.00 45.81 2.15
3562 3603 3.814842 TGTGCAATTCACTCTCGTTTGAT 59.185 39.130 0.00 0.00 45.81 2.57
3563 3604 3.202097 TGTGCAATTCACTCTCGTTTGA 58.798 40.909 0.00 0.00 45.81 2.69
3564 3605 3.607422 TGTGCAATTCACTCTCGTTTG 57.393 42.857 0.00 0.00 45.81 2.93
3565 3606 4.143115 CGTATGTGCAATTCACTCTCGTTT 60.143 41.667 0.00 0.00 45.81 3.60
3566 3607 3.367932 CGTATGTGCAATTCACTCTCGTT 59.632 43.478 0.00 0.00 45.81 3.85
3567 3608 2.923655 CGTATGTGCAATTCACTCTCGT 59.076 45.455 0.00 0.00 45.81 4.18
3568 3609 2.282555 CCGTATGTGCAATTCACTCTCG 59.717 50.000 0.00 9.21 45.81 4.04
3569 3610 3.262420 ACCGTATGTGCAATTCACTCTC 58.738 45.455 0.00 1.20 45.81 3.20
3570 3611 3.262420 GACCGTATGTGCAATTCACTCT 58.738 45.455 0.00 1.65 45.81 3.24
4176 4243 6.484643 CAGTTTCATCAGATAGTACCAATGGG 59.515 42.308 3.55 0.00 41.29 4.00
4396 4463 1.899142 TGTACATCAGCTGGCTGTGTA 59.101 47.619 24.40 21.04 43.96 2.90
4438 4505 7.701445 AGCAGAGTTGATAGCAATAATTTGTC 58.299 34.615 0.00 0.00 36.22 3.18
4685 4755 7.227156 AGTTGAACTAAACTGATGACCAGAAT 58.773 34.615 0.00 0.00 45.78 2.40
5338 5729 6.216569 ACAACATATACTAATCTGACGGCAG 58.783 40.000 13.65 13.65 43.67 4.85
5392 5783 5.624900 CAGGAAACACAAACAACATATCACG 59.375 40.000 0.00 0.00 0.00 4.35
5432 5823 7.129457 TCAGAAAGTAGGCAATAGATCACAT 57.871 36.000 0.00 0.00 0.00 3.21
5916 6317 3.733960 CTGTCAGACGCCGTCCGA 61.734 66.667 14.60 6.30 41.02 4.55
5993 6394 4.697756 GCAGGTGGTGCGGCTGTA 62.698 66.667 0.00 0.00 43.99 2.74
6059 6460 3.678717 ATCGTGTTCCGCCGACGAG 62.679 63.158 5.09 0.00 44.64 4.18
6075 6476 4.295051 GGTAGTCGATCTTGCTCTTGATC 58.705 47.826 0.00 0.00 36.62 2.92
6122 6523 1.179814 ATAGTCCCATCGGAGGCGAC 61.180 60.000 0.00 0.00 39.51 5.19
6126 6527 0.605589 GCTGATAGTCCCATCGGAGG 59.394 60.000 0.00 0.00 39.51 4.30
6133 6534 2.107366 TCGATGTTGCTGATAGTCCCA 58.893 47.619 0.00 0.00 0.00 4.37
6139 6540 2.797491 CAGACGTCGATGTTGCTGATA 58.203 47.619 17.39 0.00 0.00 2.15
6147 6548 4.796231 GGCCGCAGACGTCGATGT 62.796 66.667 10.75 10.75 37.70 3.06
6167 6568 3.873883 GACAGCAGCAGCATCGCC 61.874 66.667 3.17 0.00 45.49 5.54
6178 6579 1.885388 CGGAAACACGGTGACAGCA 60.885 57.895 16.29 0.00 0.00 4.41
6241 6645 3.249189 ACCCTCATGTGGCCGTGT 61.249 61.111 8.36 0.00 0.00 4.49
6311 6715 3.360340 GTCCACCTCGTCGACGGT 61.360 66.667 35.05 23.91 40.29 4.83
6316 6720 2.479650 GAGTCGTCCACCTCGTCG 59.520 66.667 0.00 0.00 0.00 5.12
6341 6745 1.323271 ACGACACTGGCGATGGAGAT 61.323 55.000 12.34 0.00 0.00 2.75
6343 6747 1.517257 GACGACACTGGCGATGGAG 60.517 63.158 12.34 0.00 0.00 3.86
6363 6767 2.081425 CTCCGAGATCTTGGGCTCCG 62.081 65.000 26.13 9.66 34.78 4.63
6367 6771 1.443828 GTCCTCCGAGATCTTGGGC 59.556 63.158 26.13 10.76 34.78 5.36
6401 6805 3.643978 GGCATGATCGCTCGCCAC 61.644 66.667 0.00 0.00 44.25 5.01
6405 6809 3.032609 GGACGGCATGATCGCTCG 61.033 66.667 0.00 0.00 0.00 5.03
6425 6832 4.410743 GCTGTTGCTTCCGCTGCC 62.411 66.667 0.00 0.00 36.97 4.85
6431 6838 2.050077 GGCGTTGCTGTTGCTTCC 60.050 61.111 0.00 0.00 40.48 3.46
6433 6840 3.964875 CCGGCGTTGCTGTTGCTT 61.965 61.111 6.01 0.00 40.48 3.91
6450 6857 2.564553 AATCTGACTCGGCTCCACGC 62.565 60.000 0.00 0.00 38.13 5.34
6452 6859 1.086634 GCAATCTGACTCGGCTCCAC 61.087 60.000 0.00 0.00 0.00 4.02
6453 6860 1.219124 GCAATCTGACTCGGCTCCA 59.781 57.895 0.00 0.00 0.00 3.86
6454 6861 0.809241 CAGCAATCTGACTCGGCTCC 60.809 60.000 0.00 0.00 42.95 4.70
6456 6863 1.449246 GCAGCAATCTGACTCGGCT 60.449 57.895 0.00 0.00 42.95 5.52
6457 6864 1.449246 AGCAGCAATCTGACTCGGC 60.449 57.895 0.00 0.00 42.95 5.54
6459 6866 1.859703 GATCAGCAGCAATCTGACTCG 59.140 52.381 0.00 0.00 42.63 4.18
6473 6886 0.178998 ATGGCCATGGACTGATCAGC 60.179 55.000 20.04 14.64 0.00 4.26
6480 6893 2.300967 ACCACGATGGCCATGGACT 61.301 57.895 31.80 9.85 42.67 3.85
6523 6936 2.492019 TGTCGACTTGCTCCGATATG 57.508 50.000 17.92 0.00 37.14 1.78
6524 6937 2.350868 CGATGTCGACTTGCTCCGATAT 60.351 50.000 17.92 0.00 43.02 1.63
6617 7030 2.446036 GGGCGGGTGGAGGTAGAT 60.446 66.667 0.00 0.00 0.00 1.98
6643 7056 2.547640 CTACATGCTGCCCTGCCAGT 62.548 60.000 0.00 0.00 35.28 4.00
6645 7058 2.273123 CTACATGCTGCCCTGCCA 59.727 61.111 0.00 0.00 0.00 4.92
6660 7073 2.682494 GTGGTGAGGGGACGGCTA 60.682 66.667 0.00 0.00 0.00 3.93
6711 7124 1.151221 ATGGTGTTCAGGTGCAGCA 59.849 52.632 19.63 0.00 45.28 4.41
6719 7132 0.321210 TGGTACGGCATGGTGTTCAG 60.321 55.000 0.00 0.00 0.00 3.02
6720 7133 0.321210 CTGGTACGGCATGGTGTTCA 60.321 55.000 0.00 0.00 0.00 3.18
6721 7134 1.024579 CCTGGTACGGCATGGTGTTC 61.025 60.000 0.00 0.00 0.00 3.18
6722 7135 1.002624 CCTGGTACGGCATGGTGTT 60.003 57.895 0.00 0.00 0.00 3.32
6723 7136 1.916273 TCCTGGTACGGCATGGTGT 60.916 57.895 0.00 0.00 0.00 4.16
6724 7137 1.449601 GTCCTGGTACGGCATGGTG 60.450 63.158 0.00 0.00 0.00 4.17
6726 7139 2.189521 GGTCCTGGTACGGCATGG 59.810 66.667 0.00 0.00 0.00 3.66
6766 7179 0.664761 CATGCTAATTGTCCCCTGCG 59.335 55.000 0.00 0.00 0.00 5.18
6767 7180 1.035139 CCATGCTAATTGTCCCCTGC 58.965 55.000 0.00 0.00 0.00 4.85
6768 7181 2.734755 TCCATGCTAATTGTCCCCTG 57.265 50.000 0.00 0.00 0.00 4.45
6769 7182 3.464833 AGAATCCATGCTAATTGTCCCCT 59.535 43.478 0.00 0.00 0.00 4.79
6770 7183 3.571401 CAGAATCCATGCTAATTGTCCCC 59.429 47.826 0.00 0.00 0.00 4.81
6771 7184 3.571401 CCAGAATCCATGCTAATTGTCCC 59.429 47.826 0.00 0.00 0.00 4.46
6775 7188 3.382227 TGCACCAGAATCCATGCTAATTG 59.618 43.478 0.00 0.00 38.90 2.32
6776 7189 3.634504 TGCACCAGAATCCATGCTAATT 58.365 40.909 0.00 0.00 38.90 1.40
6777 7190 3.301794 TGCACCAGAATCCATGCTAAT 57.698 42.857 0.00 0.00 38.90 1.73
6778 7191 2.804986 TGCACCAGAATCCATGCTAA 57.195 45.000 0.00 0.00 38.90 3.09
6779 7192 2.646930 CTTGCACCAGAATCCATGCTA 58.353 47.619 0.00 0.00 38.90 3.49
6905 11979 1.516386 CGTGGTCAATCGGGTCGAG 60.516 63.158 0.00 0.00 39.91 4.04
6946 12020 1.228367 CTTGCAGGTGTGGAGCCTT 60.228 57.895 0.00 0.00 33.31 4.35
6973 12047 4.673298 CCGCTGGTGTACACGGCA 62.673 66.667 28.87 18.89 37.11 5.69
7006 12080 1.977854 TGGTAGTGCTTCCTCATGTGT 59.022 47.619 0.00 0.00 0.00 3.72
7219 12305 1.681666 CTCTTCCTTGGCCTGCTGA 59.318 57.895 3.32 0.00 0.00 4.26
7228 12314 0.621082 GGGGTTCCTCCTCTTCCTTG 59.379 60.000 0.00 0.00 32.92 3.61
7393 12529 6.042638 TCTCCTGAGATGTTTCAAACCTAG 57.957 41.667 0.00 0.00 31.41 3.02
7559 12714 2.094126 GATGAGTGCGCGTGGTATGC 62.094 60.000 8.43 0.00 0.00 3.14
7562 12717 0.735978 CAAGATGAGTGCGCGTGGTA 60.736 55.000 8.43 0.00 0.00 3.25
7570 12728 3.243101 CCAATGCTGATCAAGATGAGTGC 60.243 47.826 0.00 0.00 0.00 4.40
7614 12776 1.804151 TCCGAGAAAATTTGTGCGAGG 59.196 47.619 7.99 1.33 0.00 4.63
7678 12840 8.908903 TGGTGTTACTTGAGTATTTGATTTTGT 58.091 29.630 0.00 0.00 0.00 2.83
7696 12858 7.855904 CACAAAACTACATTTCTCTGGTGTTAC 59.144 37.037 0.00 0.00 0.00 2.50
7697 12859 7.468084 GCACAAAACTACATTTCTCTGGTGTTA 60.468 37.037 0.00 0.00 0.00 2.41
7718 12880 9.997482 CTTAGAACTAAACTTTTGTAAGCACAA 57.003 29.630 0.00 0.00 42.93 3.33
7719 12881 9.386010 TCTTAGAACTAAACTTTTGTAAGCACA 57.614 29.630 0.00 0.00 34.60 4.57
7756 12918 1.047801 GTGGGGGTGTGCAGATTTTT 58.952 50.000 0.00 0.00 0.00 1.94
7757 12919 0.105760 TGTGGGGGTGTGCAGATTTT 60.106 50.000 0.00 0.00 0.00 1.82
7758 12920 0.827507 GTGTGGGGGTGTGCAGATTT 60.828 55.000 0.00 0.00 0.00 2.17
7759 12921 1.228552 GTGTGGGGGTGTGCAGATT 60.229 57.895 0.00 0.00 0.00 2.40
7760 12922 2.436109 GTGTGGGGGTGTGCAGAT 59.564 61.111 0.00 0.00 0.00 2.90
7761 12923 3.093172 TGTGTGGGGGTGTGCAGA 61.093 61.111 0.00 0.00 0.00 4.26
7762 12924 2.906897 GTGTGTGGGGGTGTGCAG 60.907 66.667 0.00 0.00 0.00 4.41
7763 12925 3.732849 TGTGTGTGGGGGTGTGCA 61.733 61.111 0.00 0.00 0.00 4.57
7764 12926 3.216292 GTGTGTGTGGGGGTGTGC 61.216 66.667 0.00 0.00 0.00 4.57
7765 12927 1.823470 CTGTGTGTGTGGGGGTGTG 60.823 63.158 0.00 0.00 0.00 3.82
7766 12928 2.595095 CTGTGTGTGTGGGGGTGT 59.405 61.111 0.00 0.00 0.00 4.16
7767 12929 2.906897 GCTGTGTGTGTGGGGGTG 60.907 66.667 0.00 0.00 0.00 4.61
7768 12930 3.415983 TGCTGTGTGTGTGGGGGT 61.416 61.111 0.00 0.00 0.00 4.95
7769 12931 2.906897 GTGCTGTGTGTGTGGGGG 60.907 66.667 0.00 0.00 0.00 5.40
7770 12932 3.279116 CGTGCTGTGTGTGTGGGG 61.279 66.667 0.00 0.00 0.00 4.96
7771 12933 3.952675 GCGTGCTGTGTGTGTGGG 61.953 66.667 0.00 0.00 0.00 4.61
7772 12934 3.201297 TGCGTGCTGTGTGTGTGG 61.201 61.111 0.00 0.00 0.00 4.17
7773 12935 1.151172 TAGTGCGTGCTGTGTGTGTG 61.151 55.000 0.00 0.00 0.00 3.82
7774 12936 1.142965 TAGTGCGTGCTGTGTGTGT 59.857 52.632 0.00 0.00 0.00 3.72
7775 12937 1.564622 GTAGTGCGTGCTGTGTGTG 59.435 57.895 0.00 0.00 0.00 3.82
7776 12938 1.594293 GGTAGTGCGTGCTGTGTGT 60.594 57.895 0.00 0.00 0.00 3.72
7777 12939 0.950555 ATGGTAGTGCGTGCTGTGTG 60.951 55.000 0.00 0.00 0.00 3.82
7778 12940 0.250295 AATGGTAGTGCGTGCTGTGT 60.250 50.000 0.00 0.00 0.00 3.72
7779 12941 1.393539 GTAATGGTAGTGCGTGCTGTG 59.606 52.381 0.00 0.00 0.00 3.66
7780 12942 1.722011 GTAATGGTAGTGCGTGCTGT 58.278 50.000 0.00 0.00 0.00 4.40
7781 12943 0.645355 CGTAATGGTAGTGCGTGCTG 59.355 55.000 0.00 0.00 0.00 4.41
7782 12944 0.245539 ACGTAATGGTAGTGCGTGCT 59.754 50.000 0.00 0.00 34.36 4.40
7783 12945 1.850441 CTACGTAATGGTAGTGCGTGC 59.150 52.381 0.00 0.00 36.09 5.34
7784 12946 3.103738 GTCTACGTAATGGTAGTGCGTG 58.896 50.000 0.00 0.00 40.58 5.34
7785 12947 2.749076 TGTCTACGTAATGGTAGTGCGT 59.251 45.455 0.00 0.00 40.58 5.24
7786 12948 3.103738 GTGTCTACGTAATGGTAGTGCG 58.896 50.000 0.00 0.00 40.58 5.34
7787 12949 4.100707 TGTGTCTACGTAATGGTAGTGC 57.899 45.455 0.00 0.00 40.58 4.40
7788 12950 5.123502 ACTCTGTGTCTACGTAATGGTAGTG 59.876 44.000 0.00 0.00 40.58 2.74
7789 12951 5.251764 ACTCTGTGTCTACGTAATGGTAGT 58.748 41.667 0.00 0.00 40.58 2.73
7790 12952 5.808403 GACTCTGTGTCTACGTAATGGTAG 58.192 45.833 0.00 0.00 42.21 3.18
7791 12953 5.808042 GACTCTGTGTCTACGTAATGGTA 57.192 43.478 0.00 0.00 42.21 3.25
7792 12954 4.698583 GACTCTGTGTCTACGTAATGGT 57.301 45.455 0.00 0.00 42.21 3.55
7803 12965 0.099791 GGAGCGCTAGACTCTGTGTC 59.900 60.000 11.50 1.75 45.67 3.67
7804 12966 1.316706 GGGAGCGCTAGACTCTGTGT 61.317 60.000 11.50 0.00 34.46 3.72
7805 12967 1.034838 AGGGAGCGCTAGACTCTGTG 61.035 60.000 11.50 0.00 34.46 3.66
7806 12968 0.323908 AAGGGAGCGCTAGACTCTGT 60.324 55.000 11.50 0.00 34.46 3.41
7807 12969 0.102120 CAAGGGAGCGCTAGACTCTG 59.898 60.000 11.50 6.59 34.46 3.35
7808 12970 0.033991 TCAAGGGAGCGCTAGACTCT 60.034 55.000 11.50 0.00 34.46 3.24
7809 12971 0.101579 GTCAAGGGAGCGCTAGACTC 59.898 60.000 11.50 0.00 0.00 3.36
7810 12972 0.612174 TGTCAAGGGAGCGCTAGACT 60.612 55.000 11.50 5.95 0.00 3.24
7811 12973 0.458716 GTGTCAAGGGAGCGCTAGAC 60.459 60.000 11.50 14.09 0.00 2.59
7812 12974 0.898326 TGTGTCAAGGGAGCGCTAGA 60.898 55.000 11.50 0.22 0.00 2.43
7813 12975 0.737715 GTGTGTCAAGGGAGCGCTAG 60.738 60.000 11.50 0.00 0.00 3.42
7814 12976 1.292223 GTGTGTCAAGGGAGCGCTA 59.708 57.895 11.50 0.00 0.00 4.26
7815 12977 2.031163 GTGTGTCAAGGGAGCGCT 59.969 61.111 11.27 11.27 0.00 5.92
7816 12978 3.050275 GGTGTGTCAAGGGAGCGC 61.050 66.667 0.00 0.00 0.00 5.92
7817 12979 1.669115 CTGGTGTGTCAAGGGAGCG 60.669 63.158 0.00 0.00 0.00 5.03
7818 12980 0.685097 TACTGGTGTGTCAAGGGAGC 59.315 55.000 0.00 0.00 0.00 4.70
7819 12981 2.303022 ACATACTGGTGTGTCAAGGGAG 59.697 50.000 0.00 0.00 28.40 4.30
7820 12982 2.334977 ACATACTGGTGTGTCAAGGGA 58.665 47.619 0.00 0.00 28.40 4.20
7821 12983 2.859165 ACATACTGGTGTGTCAAGGG 57.141 50.000 0.00 0.00 28.40 3.95
7822 12984 5.147330 TCTAACATACTGGTGTGTCAAGG 57.853 43.478 3.78 0.00 33.72 3.61
7823 12985 6.398095 TGATCTAACATACTGGTGTGTCAAG 58.602 40.000 3.78 5.45 33.72 3.02
7824 12986 6.353404 TGATCTAACATACTGGTGTGTCAA 57.647 37.500 3.78 0.00 33.72 3.18
7825 12987 5.993748 TGATCTAACATACTGGTGTGTCA 57.006 39.130 3.78 0.00 33.72 3.58
7826 12988 6.810911 AGATGATCTAACATACTGGTGTGTC 58.189 40.000 0.00 0.00 33.72 3.67
7827 12989 6.798427 AGATGATCTAACATACTGGTGTGT 57.202 37.500 0.00 0.00 36.45 3.72
7828 12990 7.816513 CCATAGATGATCTAACATACTGGTGTG 59.183 40.741 6.22 0.00 31.96 3.82
7829 12991 7.526192 GCCATAGATGATCTAACATACTGGTGT 60.526 40.741 15.26 0.00 31.96 4.16
7830 12992 6.815641 GCCATAGATGATCTAACATACTGGTG 59.184 42.308 15.26 4.04 31.96 4.17
7831 12993 6.070538 GGCCATAGATGATCTAACATACTGGT 60.071 42.308 15.26 0.00 31.96 4.00
7832 12994 6.344500 GGCCATAGATGATCTAACATACTGG 58.656 44.000 6.22 9.34 31.96 4.00
7833 12995 6.038985 CGGCCATAGATGATCTAACATACTG 58.961 44.000 6.22 0.00 31.96 2.74
7834 12996 5.394663 GCGGCCATAGATGATCTAACATACT 60.395 44.000 6.22 0.00 31.96 2.12
7835 12997 4.806247 GCGGCCATAGATGATCTAACATAC 59.194 45.833 6.22 0.00 31.96 2.39
7836 12998 4.440112 CGCGGCCATAGATGATCTAACATA 60.440 45.833 6.22 0.00 31.96 2.29
7837 12999 3.677148 CGCGGCCATAGATGATCTAACAT 60.677 47.826 6.22 0.00 31.96 2.71
7838 13000 2.352715 CGCGGCCATAGATGATCTAACA 60.353 50.000 6.22 0.00 31.96 2.41
7839 13001 2.263077 CGCGGCCATAGATGATCTAAC 58.737 52.381 6.22 0.00 31.96 2.34
7840 13002 1.204704 CCGCGGCCATAGATGATCTAA 59.795 52.381 14.67 0.00 31.96 2.10
7841 13003 0.817654 CCGCGGCCATAGATGATCTA 59.182 55.000 14.67 4.40 32.87 1.98
7842 13004 1.188219 ACCGCGGCCATAGATGATCT 61.188 55.000 28.58 0.00 0.00 2.75
7843 13005 0.737715 GACCGCGGCCATAGATGATC 60.738 60.000 28.58 7.25 0.00 2.92
7844 13006 1.293498 GACCGCGGCCATAGATGAT 59.707 57.895 28.58 0.00 0.00 2.45
7845 13007 2.131067 TGACCGCGGCCATAGATGA 61.131 57.895 28.58 0.00 0.00 2.92
7853 13015 3.600898 AAACTAGGTGACCGCGGCC 62.601 63.158 28.58 17.03 0.00 6.13
7868 13030 0.179037 GGGGCGTATAGGGGTCAAAC 60.179 60.000 0.00 0.00 0.00 2.93
7905 13067 1.891150 GGTCCGACTAGTCACCTTCAA 59.109 52.381 22.37 0.00 0.00 2.69
7940 13102 0.181114 TATGAGGGATGTGGCTGTGC 59.819 55.000 0.00 0.00 0.00 4.57
7948 13110 8.700145 TTTGGGATAAGATATATGAGGGATGT 57.300 34.615 0.00 0.00 0.00 3.06
7961 13123 7.843760 TGGTTTTGTATGGATTTGGGATAAGAT 59.156 33.333 0.00 0.00 0.00 2.40
7990 13152 4.739716 TCAAGTACGTAGAAACACCGTTTC 59.260 41.667 10.85 10.85 36.12 2.78
8018 13180 0.242017 GTGCCAGATTGCTGTGTTCC 59.758 55.000 0.00 0.00 40.63 3.62
8032 13194 3.028130 TCGGACTATGTTATCTGTGCCA 58.972 45.455 0.00 0.00 0.00 4.92
8034 13196 6.015027 AGTATCGGACTATGTTATCTGTGC 57.985 41.667 0.00 0.00 36.27 4.57
8037 13199 5.642491 TCGGAGTATCGGACTATGTTATCTG 59.358 44.000 0.00 0.00 39.70 2.90
8097 13259 2.954868 CCGCACGTATCGGCTCAC 60.955 66.667 14.22 0.00 40.46 3.51
8120 13726 2.032681 AAACCGCAGCCTGAGTCC 59.967 61.111 0.00 0.00 0.00 3.85
8184 13790 2.519063 CAGGCAGCACCCAACACA 60.519 61.111 0.00 0.00 40.58 3.72
8222 13828 2.425592 CCCTGCACTTGTCCGACA 59.574 61.111 0.00 0.00 0.00 4.35
8230 13836 4.431131 CCCCGATGCCCTGCACTT 62.431 66.667 0.00 0.00 43.04 3.16
8295 13901 3.908081 GCTCGATCGGGGCGGTAA 61.908 66.667 18.35 0.00 0.00 2.85
8309 13915 2.811317 CTTCGCCGGTCACTGCTC 60.811 66.667 1.90 0.00 0.00 4.26
8315 13921 4.028490 ATTGCCCTTCGCCGGTCA 62.028 61.111 1.90 0.00 36.24 4.02
8323 13929 2.796651 CGCTCTGCATTGCCCTTC 59.203 61.111 6.12 0.00 0.00 3.46
8324 13930 3.446570 GCGCTCTGCATTGCCCTT 61.447 61.111 6.12 0.00 45.45 3.95
8441 14048 2.640826 TCCCCCAAATACACTTCGTCTT 59.359 45.455 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.