Multiple sequence alignment - TraesCS7B01G122800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G122800 chr7B 100.000 3616 0 0 1 3616 144113301 144109686 0.000000e+00 6678.0
1 TraesCS7B01G122800 chr7B 82.320 181 13 14 345 512 211450605 211450779 4.870000e-29 139.0
2 TraesCS7B01G122800 chr7B 81.667 180 20 10 345 512 254785583 254785761 1.750000e-28 137.0
3 TraesCS7B01G122800 chr7B 87.719 114 12 2 517 628 211450975 211451088 8.150000e-27 132.0
4 TraesCS7B01G122800 chr7A 95.314 2518 81 18 726 3224 182124075 182121576 0.000000e+00 3962.0
5 TraesCS7B01G122800 chr7A 81.053 285 47 6 3335 3616 696062905 696063185 1.690000e-53 220.0
6 TraesCS7B01G122800 chr7A 92.174 115 5 4 517 628 726852545 726852658 3.740000e-35 159.0
7 TraesCS7B01G122800 chr7A 83.158 190 15 13 338 512 726852240 726852427 1.340000e-34 158.0
8 TraesCS7B01G122800 chr7A 91.228 57 3 2 3223 3277 182121558 182121502 3.870000e-10 76.8
9 TraesCS7B01G122800 chr7D 91.757 2584 105 47 715 3208 178132784 178130219 0.000000e+00 3493.0
10 TraesCS7B01G122800 chr7D 90.874 515 23 12 2720 3224 178123352 178122852 0.000000e+00 669.0
11 TraesCS7B01G122800 chr7D 83.333 726 64 18 3 697 178136723 178136024 5.130000e-173 617.0
12 TraesCS7B01G122800 chr7D 83.861 316 47 2 13 324 226461293 226460978 7.590000e-77 298.0
13 TraesCS7B01G122800 chr7D 93.878 196 11 1 2344 2538 178125657 178125462 9.820000e-76 294.0
14 TraesCS7B01G122800 chr7D 89.130 92 9 1 2642 2733 178125014 178124924 2.950000e-21 113.0
15 TraesCS7B01G122800 chr7D 95.161 62 1 1 2595 2656 178125359 178125300 2.970000e-16 97.1
16 TraesCS7B01G122800 chr1B 85.266 319 42 2 9 322 573580147 573579829 1.250000e-84 324.0
17 TraesCS7B01G122800 chr1B 84.227 317 45 3 10 322 520780569 520780254 1.630000e-78 303.0
18 TraesCS7B01G122800 chr1B 90.265 113 9 2 517 629 55972932 55972822 2.910000e-31 147.0
19 TraesCS7B01G122800 chr1B 90.265 113 9 2 517 629 55994657 55994547 2.910000e-31 147.0
20 TraesCS7B01G122800 chr3A 83.489 321 47 4 9 324 640842418 640842099 9.820000e-76 294.0
21 TraesCS7B01G122800 chr4B 82.822 326 52 1 3 324 65645860 65646185 4.570000e-74 289.0
22 TraesCS7B01G122800 chrUn 82.353 323 47 6 9 323 108024003 108023683 4.600000e-69 272.0
23 TraesCS7B01G122800 chrUn 81.734 323 49 6 9 323 335453214 335453534 9.960000e-66 261.0
24 TraesCS7B01G122800 chrUn 90.265 113 9 2 517 629 319317270 319317160 2.910000e-31 147.0
25 TraesCS7B01G122800 chr3D 81.155 329 56 2 2 324 501309326 501308998 3.580000e-65 259.0
26 TraesCS7B01G122800 chr3D 83.243 185 20 7 338 512 339262672 339262489 3.740000e-35 159.0
27 TraesCS7B01G122800 chr5D 78.873 284 47 10 3339 3616 487993021 487993297 2.870000e-41 180.0
28 TraesCS7B01G122800 chr3B 83.333 186 19 8 338 512 437826588 437826404 1.040000e-35 161.0
29 TraesCS7B01G122800 chr4D 90.435 115 7 4 517 628 100196052 100195939 8.090000e-32 148.0
30 TraesCS7B01G122800 chr2B 88.393 112 11 2 517 628 732872829 732872720 2.270000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G122800 chr7B 144109686 144113301 3615 True 6678.000 6678 100.00000 1 3616 1 chr7B.!!$R1 3615
1 TraesCS7B01G122800 chr7A 182121502 182124075 2573 True 2019.400 3962 93.27100 726 3277 2 chr7A.!!$R1 2551
2 TraesCS7B01G122800 chr7D 178130219 178136723 6504 True 2055.000 3493 87.54500 3 3208 2 chr7D.!!$R3 3205
3 TraesCS7B01G122800 chr7D 178122852 178125657 2805 True 293.275 669 92.26075 2344 3224 4 chr7D.!!$R2 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.039074 AGAAGAAGCACTGACGTCCG 60.039 55.000 14.12 9.58 0.00 4.79 F
205 210 0.253327 CTAAGCCAAGGGACCAGACC 59.747 60.000 0.00 0.00 0.00 3.85 F
320 325 0.324943 CCTTGCGAGAGGGGAAAGAA 59.675 55.000 1.22 0.00 32.94 2.52 F
1133 4388 1.077357 GCTCCTCCTCCTCGTCTCA 60.077 63.158 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1133 4388 0.174389 CGTCATAGCACTGGACAGCT 59.826 55.000 0.00 0.00 44.55 4.24 R
1256 4511 2.417379 GCTGCTCGAGGTTGTATTCTCA 60.417 50.000 15.58 0.00 0.00 3.27 R
1394 4649 2.537560 CCCGATGATCCAGTTGCGC 61.538 63.158 0.00 0.00 0.00 6.09 R
2673 6303 0.114364 AAAATGGTCGGGCCTCCTTT 59.886 50.000 0.84 11.43 38.35 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.683412 AAACCCTAACCTCGACGCTT 59.317 50.000 0.00 0.00 0.00 4.68
35 36 0.245813 AACCCTAACCTCGACGCTTC 59.754 55.000 0.00 0.00 0.00 3.86
47 48 2.025359 GACGCTTCGAGGATTTGGCG 62.025 60.000 0.00 0.00 46.47 5.69
67 68 1.757699 GGGAATCTACGCCAGAACTCT 59.242 52.381 0.00 0.00 36.67 3.24
76 77 3.093057 ACGCCAGAACTCTGTCTAATCT 58.907 45.455 6.01 0.00 42.27 2.40
80 81 4.159506 GCCAGAACTCTGTCTAATCTGTCT 59.840 45.833 6.01 0.00 42.27 3.41
100 101 1.328439 CGACGAACGAACTTGAGGAG 58.672 55.000 0.14 0.00 45.77 3.69
111 112 1.753368 CTTGAGGAGGATCGGAGCCC 61.753 65.000 9.01 0.28 34.37 5.19
124 125 0.108567 GGAGCCCGAAAGACTGACTC 60.109 60.000 0.00 0.00 0.00 3.36
133 134 4.537965 CGAAAGACTGACTCGAAGAAGAA 58.462 43.478 0.00 0.00 34.09 2.52
134 135 4.615121 CGAAAGACTGACTCGAAGAAGAAG 59.385 45.833 0.00 0.00 34.09 2.85
135 136 3.569250 AGACTGACTCGAAGAAGAAGC 57.431 47.619 0.00 0.00 34.09 3.86
136 137 2.887783 AGACTGACTCGAAGAAGAAGCA 59.112 45.455 0.00 0.00 34.09 3.91
137 138 2.983803 GACTGACTCGAAGAAGAAGCAC 59.016 50.000 0.00 0.00 34.09 4.40
138 139 2.625790 ACTGACTCGAAGAAGAAGCACT 59.374 45.455 0.00 0.00 34.09 4.40
139 140 2.985809 CTGACTCGAAGAAGAAGCACTG 59.014 50.000 0.00 0.00 34.09 3.66
140 141 2.623416 TGACTCGAAGAAGAAGCACTGA 59.377 45.455 0.00 0.00 34.09 3.41
141 142 2.983803 GACTCGAAGAAGAAGCACTGAC 59.016 50.000 0.00 0.00 34.09 3.51
142 143 1.982223 CTCGAAGAAGAAGCACTGACG 59.018 52.381 0.00 0.00 34.09 4.35
143 144 1.337071 TCGAAGAAGAAGCACTGACGT 59.663 47.619 0.00 0.00 0.00 4.34
144 145 1.716581 CGAAGAAGAAGCACTGACGTC 59.283 52.381 9.11 9.11 0.00 4.34
145 146 2.062519 GAAGAAGAAGCACTGACGTCC 58.937 52.381 14.12 0.00 0.00 4.79
146 147 0.039074 AGAAGAAGCACTGACGTCCG 60.039 55.000 14.12 9.58 0.00 4.79
147 148 0.318784 GAAGAAGCACTGACGTCCGT 60.319 55.000 14.12 10.36 0.00 4.69
148 149 0.318784 AAGAAGCACTGACGTCCGTC 60.319 55.000 14.12 12.66 44.77 4.79
149 150 1.733399 GAAGCACTGACGTCCGTCC 60.733 63.158 14.12 2.42 43.97 4.79
150 151 3.553437 AAGCACTGACGTCCGTCCG 62.553 63.158 14.12 12.74 43.97 4.79
178 179 2.486982 GCCCTTTCGAGAACTAAAACCC 59.513 50.000 0.00 0.00 0.00 4.11
181 182 4.934001 CCCTTTCGAGAACTAAAACCCTAC 59.066 45.833 0.00 0.00 0.00 3.18
190 191 8.351461 CGAGAACTAAAACCCTACCTATCTAAG 58.649 40.741 0.00 0.00 0.00 2.18
191 192 8.020777 AGAACTAAAACCCTACCTATCTAAGC 57.979 38.462 0.00 0.00 0.00 3.09
193 194 6.207532 ACTAAAACCCTACCTATCTAAGCCA 58.792 40.000 0.00 0.00 0.00 4.75
197 198 2.907042 CCCTACCTATCTAAGCCAAGGG 59.093 54.545 0.00 0.00 33.16 3.95
202 207 2.370189 CCTATCTAAGCCAAGGGACCAG 59.630 54.545 0.00 0.00 0.00 4.00
205 210 0.253327 CTAAGCCAAGGGACCAGACC 59.747 60.000 0.00 0.00 0.00 3.85
217 222 3.775654 CAGACCCTCCTCGCCACC 61.776 72.222 0.00 0.00 0.00 4.61
218 223 3.999285 AGACCCTCCTCGCCACCT 61.999 66.667 0.00 0.00 0.00 4.00
255 260 2.150051 GGAGGGGAGGCGAATCCAT 61.150 63.158 8.41 0.00 41.52 3.41
278 283 0.867753 CTCGCCGACGGAGATCAAAG 60.868 60.000 20.95 5.12 40.63 2.77
280 285 1.521681 GCCGACGGAGATCAAAGGG 60.522 63.158 20.50 0.00 0.00 3.95
281 286 1.898154 CCGACGGAGATCAAAGGGT 59.102 57.895 8.64 0.00 0.00 4.34
293 298 3.943671 TCAAAGGGTGGAAGTCTTTCA 57.056 42.857 0.00 0.00 34.90 2.69
295 300 3.202151 TCAAAGGGTGGAAGTCTTTCACT 59.798 43.478 21.03 2.29 36.64 3.41
319 324 1.983224 CCTTGCGAGAGGGGAAAGA 59.017 57.895 1.22 0.00 32.94 2.52
320 325 0.324943 CCTTGCGAGAGGGGAAAGAA 59.675 55.000 1.22 0.00 32.94 2.52
392 397 7.176515 TGTGTGCATACTTAAGGATTTTGTGAT 59.823 33.333 15.05 0.00 0.00 3.06
393 398 7.485913 GTGTGCATACTTAAGGATTTTGTGATG 59.514 37.037 6.31 0.00 0.00 3.07
394 399 7.392953 TGTGCATACTTAAGGATTTTGTGATGA 59.607 33.333 7.53 0.00 0.00 2.92
395 400 8.408601 GTGCATACTTAAGGATTTTGTGATGAT 58.591 33.333 7.53 0.00 0.00 2.45
492 498 4.888326 AGAGATGACTATGGCTCATTCC 57.112 45.455 0.00 0.00 0.00 3.01
495 501 2.627515 TGACTATGGCTCATTCCTGC 57.372 50.000 0.00 0.00 0.00 4.85
615 647 9.031537 TGTTGGTTCATAAGTCTAACTAGATGA 57.968 33.333 0.00 0.00 34.39 2.92
680 712 6.822676 TGCATTTAAATGGGATTTTTGCTAGG 59.177 34.615 25.61 0.00 36.90 3.02
693 725 8.432359 GGATTTTTGCTAGGAAAAATACGTTTG 58.568 33.333 34.02 0.00 42.76 2.93
697 729 8.514136 TTTGCTAGGAAAAATACGTTTGAATG 57.486 30.769 6.99 0.00 0.00 2.67
698 730 6.616947 TGCTAGGAAAAATACGTTTGAATGG 58.383 36.000 0.00 0.00 0.00 3.16
699 731 6.431543 TGCTAGGAAAAATACGTTTGAATGGA 59.568 34.615 0.00 0.00 0.00 3.41
700 732 6.745907 GCTAGGAAAAATACGTTTGAATGGAC 59.254 38.462 0.00 0.00 0.00 4.02
701 733 6.020971 AGGAAAAATACGTTTGAATGGACC 57.979 37.500 0.00 0.00 0.00 4.46
702 734 5.536916 AGGAAAAATACGTTTGAATGGACCA 59.463 36.000 0.00 0.00 0.00 4.02
703 735 5.631929 GGAAAAATACGTTTGAATGGACCAC 59.368 40.000 0.00 0.00 0.00 4.16
704 736 4.776795 AAATACGTTTGAATGGACCACC 57.223 40.909 0.00 0.00 0.00 4.61
705 737 3.713826 ATACGTTTGAATGGACCACCT 57.286 42.857 0.00 0.00 37.04 4.00
706 738 4.829872 ATACGTTTGAATGGACCACCTA 57.170 40.909 0.00 0.00 37.04 3.08
707 739 3.495434 ACGTTTGAATGGACCACCTAA 57.505 42.857 0.00 0.00 37.04 2.69
709 741 4.403734 ACGTTTGAATGGACCACCTAAAT 58.596 39.130 0.00 0.00 37.04 1.40
711 743 5.413523 ACGTTTGAATGGACCACCTAAATAC 59.586 40.000 0.00 0.00 37.04 1.89
712 744 5.413213 CGTTTGAATGGACCACCTAAATACA 59.587 40.000 0.00 0.00 37.04 2.29
713 745 6.403200 CGTTTGAATGGACCACCTAAATACAG 60.403 42.308 0.00 0.00 37.04 2.74
724 3978 7.824672 ACCACCTAAATACAGTATATAGCGAC 58.175 38.462 0.00 0.00 0.00 5.19
792 4046 9.359653 CATAATAGTCATTTCCATTCTTCCCTT 57.640 33.333 0.00 0.00 0.00 3.95
823 4077 1.291877 CGGTTCTTGACTTGCCTCGG 61.292 60.000 0.00 0.00 0.00 4.63
836 4090 2.623915 CCTCGGAGTCAACGGTCGT 61.624 63.158 4.02 0.00 0.00 4.34
849 4104 1.376812 GGTCGTTTCCCGCCAATCT 60.377 57.895 0.00 0.00 36.19 2.40
861 4116 1.751927 CCAATCTGACTGGGCAGGC 60.752 63.158 3.43 0.00 36.55 4.85
863 4118 2.233566 AATCTGACTGGGCAGGCCA 61.234 57.895 16.38 16.38 34.90 5.36
931 4186 1.213537 GCATCACAGCCGTGCATTT 59.786 52.632 0.00 0.00 43.28 2.32
952 4207 3.328382 TTTCCACACGGTAATCCTCAG 57.672 47.619 0.00 0.00 0.00 3.35
955 4210 1.754803 CCACACGGTAATCCTCAGCTA 59.245 52.381 0.00 0.00 0.00 3.32
960 4215 1.424638 GGTAATCCTCAGCTAGGCCA 58.575 55.000 5.01 0.00 46.10 5.36
973 4228 6.644347 TCAGCTAGGCCATTATTAATAGCTC 58.356 40.000 14.18 0.00 42.95 4.09
991 4246 2.997315 TGCTCTCCACCCACCTCG 60.997 66.667 0.00 0.00 0.00 4.63
1003 4258 2.446994 ACCTCGTCCCCCACACAA 60.447 61.111 0.00 0.00 0.00 3.33
1011 4266 2.035626 CCCCACACAAGCCGGAAT 59.964 61.111 5.05 0.00 0.00 3.01
1037 4292 2.279851 CCACACGACCAACGAGCA 60.280 61.111 0.00 0.00 45.77 4.26
1096 4351 2.095252 GCAAGCGTCCCGTCTTCTC 61.095 63.158 0.00 0.00 0.00 2.87
1133 4388 1.077357 GCTCCTCCTCCTCGTCTCA 60.077 63.158 0.00 0.00 0.00 3.27
1256 4511 1.863662 CGCACCGGTATATCCTCGCT 61.864 60.000 6.87 0.00 0.00 4.93
1424 4679 4.446413 ATCGGGTTCGTGGTCGGC 62.446 66.667 0.00 0.00 37.69 5.54
1592 4847 1.830477 GAGAAGGAGGACATGCTGTCT 59.170 52.381 13.59 0.00 46.19 3.41
1598 4853 1.135139 GAGGACATGCTGTCTTCGCTA 59.865 52.381 13.59 0.00 46.19 4.26
2590 5920 1.733389 CGTCTTCAATTGGGCATGTGC 60.733 52.381 5.42 0.00 41.14 4.57
2673 6303 1.605710 GGTCGATCGATAAAGACCGGA 59.394 52.381 22.50 0.00 42.88 5.14
2680 6310 2.429610 TCGATAAAGACCGGAAAGGAGG 59.570 50.000 9.46 0.00 45.00 4.30
2681 6311 2.562635 GATAAAGACCGGAAAGGAGGC 58.437 52.381 9.46 0.00 45.00 4.70
2684 6341 4.468689 GACCGGAAAGGAGGCCCG 62.469 72.222 9.46 0.00 45.00 6.13
2687 6344 4.468689 CGGAAAGGAGGCCCGACC 62.469 72.222 0.00 0.09 45.58 4.79
2721 6378 9.888878 ACAAATGATATTTAGAATGAGATTGCG 57.111 29.630 0.00 0.00 0.00 4.85
2911 8180 1.373748 GTCGCACCCAGCTTCGTAA 60.374 57.895 0.00 0.00 42.61 3.18
2937 8210 1.618888 GGCTGGTGGTAGTAGTGGAGA 60.619 57.143 0.00 0.00 0.00 3.71
2946 8219 4.017407 TGGTAGTAGTGGAGAACTGGAGAT 60.017 45.833 0.00 0.00 40.26 2.75
3127 8423 4.202070 CCTCCTCTATCGAACAGAGAAACC 60.202 50.000 22.51 0.00 41.80 3.27
3208 8507 1.404391 GAGCGACGGGAAGAATAGACA 59.596 52.381 0.00 0.00 0.00 3.41
3210 8509 1.404391 GCGACGGGAAGAATAGACAGA 59.596 52.381 0.00 0.00 0.00 3.41
3266 8584 0.524816 ATGCCGCGTCTACGTACTTG 60.525 55.000 4.92 0.00 42.22 3.16
3267 8585 1.154150 GCCGCGTCTACGTACTTGT 60.154 57.895 4.92 0.00 42.22 3.16
3269 8587 1.465689 GCCGCGTCTACGTACTTGTTA 60.466 52.381 4.92 0.00 42.22 2.41
3270 8588 2.169179 CCGCGTCTACGTACTTGTTAC 58.831 52.381 4.92 0.00 42.22 2.50
3285 8603 8.693542 GTACTTGTTACGTATCCAACTTACAT 57.306 34.615 0.00 0.00 0.00 2.29
3286 8604 7.823149 ACTTGTTACGTATCCAACTTACATC 57.177 36.000 0.00 0.00 0.00 3.06
3287 8605 7.380536 ACTTGTTACGTATCCAACTTACATCA 58.619 34.615 0.00 0.00 0.00 3.07
3288 8606 7.874016 ACTTGTTACGTATCCAACTTACATCAA 59.126 33.333 0.00 0.00 0.00 2.57
3289 8607 8.780846 TTGTTACGTATCCAACTTACATCAAT 57.219 30.769 0.00 0.00 0.00 2.57
3290 8608 8.415192 TGTTACGTATCCAACTTACATCAATC 57.585 34.615 0.00 0.00 0.00 2.67
3291 8609 8.035984 TGTTACGTATCCAACTTACATCAATCA 58.964 33.333 0.00 0.00 0.00 2.57
3292 8610 6.903883 ACGTATCCAACTTACATCAATCAC 57.096 37.500 0.00 0.00 0.00 3.06
3293 8611 5.815740 ACGTATCCAACTTACATCAATCACC 59.184 40.000 0.00 0.00 0.00 4.02
3294 8612 6.049149 CGTATCCAACTTACATCAATCACCT 58.951 40.000 0.00 0.00 0.00 4.00
3295 8613 6.201044 CGTATCCAACTTACATCAATCACCTC 59.799 42.308 0.00 0.00 0.00 3.85
3296 8614 4.843728 TCCAACTTACATCAATCACCTCC 58.156 43.478 0.00 0.00 0.00 4.30
3297 8615 4.536090 TCCAACTTACATCAATCACCTCCT 59.464 41.667 0.00 0.00 0.00 3.69
3298 8616 5.014123 TCCAACTTACATCAATCACCTCCTT 59.986 40.000 0.00 0.00 0.00 3.36
3299 8617 5.711976 CCAACTTACATCAATCACCTCCTTT 59.288 40.000 0.00 0.00 0.00 3.11
3300 8618 6.127897 CCAACTTACATCAATCACCTCCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
3301 8619 5.501156 ACTTACATCAATCACCTCCTTTCC 58.499 41.667 0.00 0.00 0.00 3.13
3302 8620 5.251700 ACTTACATCAATCACCTCCTTTCCT 59.748 40.000 0.00 0.00 0.00 3.36
3303 8621 6.443849 ACTTACATCAATCACCTCCTTTCCTA 59.556 38.462 0.00 0.00 0.00 2.94
3304 8622 5.779241 ACATCAATCACCTCCTTTCCTAA 57.221 39.130 0.00 0.00 0.00 2.69
3305 8623 6.332976 ACATCAATCACCTCCTTTCCTAAT 57.667 37.500 0.00 0.00 0.00 1.73
3306 8624 6.125029 ACATCAATCACCTCCTTTCCTAATG 58.875 40.000 0.00 0.00 0.00 1.90
3307 8625 4.526970 TCAATCACCTCCTTTCCTAATGC 58.473 43.478 0.00 0.00 0.00 3.56
3308 8626 3.584733 ATCACCTCCTTTCCTAATGCC 57.415 47.619 0.00 0.00 0.00 4.40
3309 8627 1.564348 TCACCTCCTTTCCTAATGCCC 59.436 52.381 0.00 0.00 0.00 5.36
3310 8628 1.566231 CACCTCCTTTCCTAATGCCCT 59.434 52.381 0.00 0.00 0.00 5.19
3311 8629 2.024941 CACCTCCTTTCCTAATGCCCTT 60.025 50.000 0.00 0.00 0.00 3.95
3312 8630 2.242452 ACCTCCTTTCCTAATGCCCTTC 59.758 50.000 0.00 0.00 0.00 3.46
3313 8631 2.511637 CCTCCTTTCCTAATGCCCTTCT 59.488 50.000 0.00 0.00 0.00 2.85
3314 8632 3.434310 CCTCCTTTCCTAATGCCCTTCTC 60.434 52.174 0.00 0.00 0.00 2.87
3315 8633 3.189606 TCCTTTCCTAATGCCCTTCTCA 58.810 45.455 0.00 0.00 0.00 3.27
3316 8634 3.591527 TCCTTTCCTAATGCCCTTCTCAA 59.408 43.478 0.00 0.00 0.00 3.02
3317 8635 4.230502 TCCTTTCCTAATGCCCTTCTCAAT 59.769 41.667 0.00 0.00 0.00 2.57
3318 8636 4.340381 CCTTTCCTAATGCCCTTCTCAATG 59.660 45.833 0.00 0.00 0.00 2.82
3319 8637 2.936202 TCCTAATGCCCTTCTCAATGC 58.064 47.619 0.00 0.00 0.00 3.56
3320 8638 2.511218 TCCTAATGCCCTTCTCAATGCT 59.489 45.455 0.00 0.00 0.00 3.79
3321 8639 2.883386 CCTAATGCCCTTCTCAATGCTC 59.117 50.000 0.00 0.00 0.00 4.26
3322 8640 1.772836 AATGCCCTTCTCAATGCTCC 58.227 50.000 0.00 0.00 0.00 4.70
3323 8641 0.627451 ATGCCCTTCTCAATGCTCCA 59.373 50.000 0.00 0.00 0.00 3.86
3324 8642 0.322816 TGCCCTTCTCAATGCTCCAC 60.323 55.000 0.00 0.00 0.00 4.02
3325 8643 1.034292 GCCCTTCTCAATGCTCCACC 61.034 60.000 0.00 0.00 0.00 4.61
3326 8644 0.394899 CCCTTCTCAATGCTCCACCC 60.395 60.000 0.00 0.00 0.00 4.61
3327 8645 0.622665 CCTTCTCAATGCTCCACCCT 59.377 55.000 0.00 0.00 0.00 4.34
3328 8646 1.681166 CCTTCTCAATGCTCCACCCTG 60.681 57.143 0.00 0.00 0.00 4.45
3329 8647 1.004044 CTTCTCAATGCTCCACCCTGT 59.996 52.381 0.00 0.00 0.00 4.00
3330 8648 1.951209 TCTCAATGCTCCACCCTGTA 58.049 50.000 0.00 0.00 0.00 2.74
3331 8649 1.555075 TCTCAATGCTCCACCCTGTAC 59.445 52.381 0.00 0.00 0.00 2.90
3332 8650 0.618458 TCAATGCTCCACCCTGTACC 59.382 55.000 0.00 0.00 0.00 3.34
3333 8651 0.744414 CAATGCTCCACCCTGTACCG 60.744 60.000 0.00 0.00 0.00 4.02
3334 8652 1.910580 AATGCTCCACCCTGTACCGG 61.911 60.000 0.00 0.00 0.00 5.28
3344 8662 0.680061 CCTGTACCGGGGATAAGAGC 59.320 60.000 6.32 0.00 0.00 4.09
3345 8663 1.410004 CTGTACCGGGGATAAGAGCA 58.590 55.000 6.32 0.00 0.00 4.26
3346 8664 1.971357 CTGTACCGGGGATAAGAGCAT 59.029 52.381 6.32 0.00 0.00 3.79
3347 8665 1.968493 TGTACCGGGGATAAGAGCATC 59.032 52.381 6.32 0.00 0.00 3.91
3372 8690 2.572173 CGGACACGTAAAAACTGCTC 57.428 50.000 0.00 0.00 34.81 4.26
3373 8691 1.193874 CGGACACGTAAAAACTGCTCC 59.806 52.381 0.00 0.00 34.81 4.70
3374 8692 2.215196 GGACACGTAAAAACTGCTCCA 58.785 47.619 0.00 0.00 0.00 3.86
3375 8693 2.032290 GGACACGTAAAAACTGCTCCAC 60.032 50.000 0.00 0.00 0.00 4.02
3376 8694 1.595794 ACACGTAAAAACTGCTCCACG 59.404 47.619 0.00 0.00 35.62 4.94
3377 8695 0.584876 ACGTAAAAACTGCTCCACGC 59.415 50.000 0.00 0.00 39.77 5.34
3378 8696 0.450482 CGTAAAAACTGCTCCACGCG 60.450 55.000 3.53 3.53 43.27 6.01
3379 8697 0.724785 GTAAAAACTGCTCCACGCGC 60.725 55.000 5.73 0.00 43.27 6.86
3380 8698 0.882927 TAAAAACTGCTCCACGCGCT 60.883 50.000 5.73 0.00 43.27 5.92
3381 8699 0.882927 AAAAACTGCTCCACGCGCTA 60.883 50.000 5.73 0.00 43.27 4.26
3382 8700 0.882927 AAAACTGCTCCACGCGCTAA 60.883 50.000 5.73 0.00 43.27 3.09
3383 8701 0.882927 AAACTGCTCCACGCGCTAAA 60.883 50.000 5.73 0.00 43.27 1.85
3384 8702 1.566018 AACTGCTCCACGCGCTAAAC 61.566 55.000 5.73 0.00 43.27 2.01
3385 8703 2.027073 CTGCTCCACGCGCTAAACA 61.027 57.895 5.73 0.00 43.27 2.83
3386 8704 2.227968 CTGCTCCACGCGCTAAACAC 62.228 60.000 5.73 0.00 43.27 3.32
3387 8705 2.027625 GCTCCACGCGCTAAACACT 61.028 57.895 5.73 0.00 0.00 3.55
3388 8706 1.781555 CTCCACGCGCTAAACACTG 59.218 57.895 5.73 0.00 0.00 3.66
3389 8707 0.944311 CTCCACGCGCTAAACACTGT 60.944 55.000 5.73 0.00 0.00 3.55
3390 8708 0.531090 TCCACGCGCTAAACACTGTT 60.531 50.000 5.73 0.00 0.00 3.16
3391 8709 0.110823 CCACGCGCTAAACACTGTTC 60.111 55.000 5.73 0.00 0.00 3.18
3392 8710 0.859232 CACGCGCTAAACACTGTTCT 59.141 50.000 5.73 0.00 0.00 3.01
3393 8711 1.260561 CACGCGCTAAACACTGTTCTT 59.739 47.619 5.73 0.00 0.00 2.52
3394 8712 1.937899 ACGCGCTAAACACTGTTCTTT 59.062 42.857 5.73 0.00 0.00 2.52
3395 8713 2.353579 ACGCGCTAAACACTGTTCTTTT 59.646 40.909 5.73 0.00 0.00 2.27
3396 8714 3.181504 ACGCGCTAAACACTGTTCTTTTT 60.182 39.130 5.73 0.00 0.00 1.94
3397 8715 4.034279 ACGCGCTAAACACTGTTCTTTTTA 59.966 37.500 5.73 0.00 0.00 1.52
3398 8716 4.607235 CGCGCTAAACACTGTTCTTTTTAG 59.393 41.667 5.56 0.00 35.50 1.85
3399 8717 4.909880 GCGCTAAACACTGTTCTTTTTAGG 59.090 41.667 0.00 0.00 33.79 2.69
3400 8718 4.909880 CGCTAAACACTGTTCTTTTTAGGC 59.090 41.667 0.00 0.00 33.79 3.93
3401 8719 4.909880 GCTAAACACTGTTCTTTTTAGGCG 59.090 41.667 0.00 0.00 33.79 5.52
3402 8720 3.349488 AACACTGTTCTTTTTAGGCGC 57.651 42.857 0.00 0.00 0.00 6.53
3403 8721 2.294074 ACACTGTTCTTTTTAGGCGCA 58.706 42.857 10.83 0.00 0.00 6.09
3404 8722 2.290641 ACACTGTTCTTTTTAGGCGCAG 59.709 45.455 10.83 0.00 0.00 5.18
3405 8723 2.548057 CACTGTTCTTTTTAGGCGCAGA 59.452 45.455 10.83 0.00 0.00 4.26
3406 8724 2.808543 ACTGTTCTTTTTAGGCGCAGAG 59.191 45.455 10.83 0.00 0.00 3.35
3407 8725 3.067106 CTGTTCTTTTTAGGCGCAGAGA 58.933 45.455 10.83 0.00 0.00 3.10
3408 8726 2.806244 TGTTCTTTTTAGGCGCAGAGAC 59.194 45.455 10.83 4.44 0.00 3.36
3409 8727 1.710013 TCTTTTTAGGCGCAGAGACG 58.290 50.000 10.83 0.00 0.00 4.18
3417 8735 2.568612 CGCAGAGACGCTCCAAGA 59.431 61.111 3.66 0.00 0.00 3.02
3418 8736 1.515952 CGCAGAGACGCTCCAAGAG 60.516 63.158 3.66 0.00 0.00 2.85
3419 8737 1.886585 GCAGAGACGCTCCAAGAGA 59.113 57.895 0.00 0.00 0.00 3.10
3420 8738 0.459489 GCAGAGACGCTCCAAGAGAT 59.541 55.000 0.00 0.00 0.00 2.75
3421 8739 1.802136 GCAGAGACGCTCCAAGAGATG 60.802 57.143 0.00 0.00 0.00 2.90
3422 8740 0.459489 AGAGACGCTCCAAGAGATGC 59.541 55.000 0.00 0.00 0.00 3.91
3423 8741 0.459489 GAGACGCTCCAAGAGATGCT 59.541 55.000 0.00 0.00 0.00 3.79
3424 8742 1.678627 GAGACGCTCCAAGAGATGCTA 59.321 52.381 0.00 0.00 0.00 3.49
3425 8743 1.407258 AGACGCTCCAAGAGATGCTAC 59.593 52.381 0.00 0.00 0.00 3.58
3426 8744 1.135139 GACGCTCCAAGAGATGCTACA 59.865 52.381 0.00 0.00 0.00 2.74
3427 8745 1.550524 ACGCTCCAAGAGATGCTACAA 59.449 47.619 0.00 0.00 0.00 2.41
3428 8746 2.028112 ACGCTCCAAGAGATGCTACAAA 60.028 45.455 0.00 0.00 0.00 2.83
3429 8747 3.002791 CGCTCCAAGAGATGCTACAAAA 58.997 45.455 0.00 0.00 0.00 2.44
3430 8748 3.181516 CGCTCCAAGAGATGCTACAAAAC 60.182 47.826 0.00 0.00 0.00 2.43
3431 8749 3.753272 GCTCCAAGAGATGCTACAAAACA 59.247 43.478 0.00 0.00 0.00 2.83
3432 8750 4.142730 GCTCCAAGAGATGCTACAAAACAG 60.143 45.833 0.00 0.00 0.00 3.16
3433 8751 4.973168 TCCAAGAGATGCTACAAAACAGT 58.027 39.130 0.00 0.00 0.00 3.55
3434 8752 4.756642 TCCAAGAGATGCTACAAAACAGTG 59.243 41.667 0.00 0.00 0.00 3.66
3435 8753 4.470462 CAAGAGATGCTACAAAACAGTGC 58.530 43.478 0.00 0.00 0.00 4.40
3436 8754 2.738846 AGAGATGCTACAAAACAGTGCG 59.261 45.455 0.00 0.00 0.00 5.34
3437 8755 2.480419 GAGATGCTACAAAACAGTGCGT 59.520 45.455 0.00 0.00 0.00 5.24
3438 8756 2.224079 AGATGCTACAAAACAGTGCGTG 59.776 45.455 0.00 0.00 0.00 5.34
3439 8757 0.028770 TGCTACAAAACAGTGCGTGC 59.971 50.000 0.00 0.00 0.00 5.34
3440 8758 0.991770 GCTACAAAACAGTGCGTGCG 60.992 55.000 0.00 0.00 0.00 5.34
3441 8759 0.991770 CTACAAAACAGTGCGTGCGC 60.992 55.000 9.85 9.85 42.35 6.09
3489 8807 2.675767 CGCTATCGCATGCTGAAAAT 57.324 45.000 17.13 4.10 35.30 1.82
3490 8808 2.990941 CGCTATCGCATGCTGAAAATT 58.009 42.857 17.13 2.77 35.30 1.82
3491 8809 3.365832 CGCTATCGCATGCTGAAAATTT 58.634 40.909 17.13 2.42 35.30 1.82
3492 8810 3.179010 CGCTATCGCATGCTGAAAATTTG 59.821 43.478 17.13 0.00 35.30 2.32
3493 8811 3.488310 GCTATCGCATGCTGAAAATTTGG 59.512 43.478 17.13 3.13 35.78 3.28
3494 8812 2.367030 TCGCATGCTGAAAATTTGGG 57.633 45.000 17.13 0.00 0.00 4.12
3495 8813 1.891811 TCGCATGCTGAAAATTTGGGA 59.108 42.857 17.13 0.00 0.00 4.37
3496 8814 2.496871 TCGCATGCTGAAAATTTGGGAT 59.503 40.909 17.13 0.00 0.00 3.85
3497 8815 3.698539 TCGCATGCTGAAAATTTGGGATA 59.301 39.130 17.13 0.00 0.00 2.59
3498 8816 3.798337 CGCATGCTGAAAATTTGGGATAC 59.202 43.478 17.13 0.00 0.00 2.24
3510 8828 4.232248 GGATACCAAACCGCGCGC 62.232 66.667 27.36 23.91 0.00 6.86
3511 8829 4.568876 GATACCAAACCGCGCGCG 62.569 66.667 43.73 43.73 39.44 6.86
3516 8834 2.425448 CAAACCGCGCGCGTTTTA 60.425 55.556 45.51 0.00 32.58 1.52
3517 8835 1.794394 CAAACCGCGCGCGTTTTAT 60.794 52.632 45.51 26.02 32.58 1.40
3518 8836 0.518764 CAAACCGCGCGCGTTTTATA 60.519 50.000 45.51 0.00 32.58 0.98
3519 8837 0.165511 AAACCGCGCGCGTTTTATAA 59.834 45.000 45.51 0.00 32.58 0.98
3520 8838 0.374410 AACCGCGCGCGTTTTATAAT 59.626 45.000 45.51 18.98 37.81 1.28
3521 8839 0.374410 ACCGCGCGCGTTTTATAATT 59.626 45.000 45.51 19.00 37.81 1.40
3522 8840 1.202054 ACCGCGCGCGTTTTATAATTT 60.202 42.857 45.51 17.52 37.81 1.82
3523 8841 1.184056 CCGCGCGCGTTTTATAATTTG 59.816 47.619 45.51 25.50 37.81 2.32
3524 8842 1.392530 CGCGCGCGTTTTATAATTTGC 60.393 47.619 42.49 8.40 34.35 3.68
3525 8843 1.579808 GCGCGCGTTTTATAATTTGCA 59.420 42.857 32.35 0.00 0.00 4.08
3526 8844 2.591083 GCGCGCGTTTTATAATTTGCAC 60.591 45.455 32.35 4.24 0.00 4.57
3527 8845 2.843643 CGCGCGTTTTATAATTTGCACT 59.156 40.909 24.19 0.00 0.00 4.40
3528 8846 3.300253 CGCGCGTTTTATAATTTGCACTG 60.300 43.478 24.19 0.00 0.00 3.66
3529 8847 3.539401 GCGCGTTTTATAATTTGCACTGC 60.539 43.478 8.43 0.00 0.00 4.40
3530 8848 3.300253 CGCGTTTTATAATTTGCACTGCG 60.300 43.478 0.00 0.00 34.56 5.18
3531 8849 3.606346 GCGTTTTATAATTTGCACTGCGT 59.394 39.130 0.00 0.00 0.00 5.24
3532 8850 4.488573 GCGTTTTATAATTTGCACTGCGTG 60.489 41.667 4.61 4.61 36.51 5.34
3533 8851 4.615121 CGTTTTATAATTTGCACTGCGTGT 59.385 37.500 9.76 0.00 35.75 4.49
3534 8852 5.116377 CGTTTTATAATTTGCACTGCGTGTT 59.884 36.000 9.76 0.00 35.75 3.32
3535 8853 6.345408 CGTTTTATAATTTGCACTGCGTGTTT 60.345 34.615 9.76 3.48 35.75 2.83
3536 8854 7.341446 GTTTTATAATTTGCACTGCGTGTTTT 58.659 30.769 9.76 3.22 35.75 2.43
3537 8855 7.470289 TTTATAATTTGCACTGCGTGTTTTT 57.530 28.000 9.76 3.47 35.75 1.94
3570 8888 4.513198 TTTTTGGGCATCTAGAAAACCG 57.487 40.909 0.00 0.00 0.00 4.44
3571 8889 3.426787 TTTGGGCATCTAGAAAACCGA 57.573 42.857 0.00 0.00 0.00 4.69
3572 8890 3.644966 TTGGGCATCTAGAAAACCGAT 57.355 42.857 0.00 0.00 0.00 4.18
3573 8891 2.917933 TGGGCATCTAGAAAACCGATG 58.082 47.619 0.00 0.00 38.02 3.84
3574 8892 2.238646 TGGGCATCTAGAAAACCGATGT 59.761 45.455 0.00 0.00 37.46 3.06
3575 8893 3.279434 GGGCATCTAGAAAACCGATGTT 58.721 45.455 0.00 0.00 37.46 2.71
3576 8894 3.065371 GGGCATCTAGAAAACCGATGTTG 59.935 47.826 0.00 0.00 37.46 3.33
3577 8895 3.065371 GGCATCTAGAAAACCGATGTTGG 59.935 47.826 0.00 0.00 37.46 3.77
3578 8896 3.487544 GCATCTAGAAAACCGATGTTGGC 60.488 47.826 0.00 0.00 37.46 4.52
3579 8897 3.695830 TCTAGAAAACCGATGTTGGCT 57.304 42.857 0.00 0.00 34.13 4.75
3580 8898 4.811969 TCTAGAAAACCGATGTTGGCTA 57.188 40.909 0.00 0.00 34.13 3.93
3581 8899 4.501071 TCTAGAAAACCGATGTTGGCTAC 58.499 43.478 0.00 0.00 34.13 3.58
3582 8900 2.433436 AGAAAACCGATGTTGGCTACC 58.567 47.619 0.00 0.00 34.13 3.18
3583 8901 1.129811 GAAAACCGATGTTGGCTACCG 59.870 52.381 0.00 0.00 34.13 4.02
3584 8902 1.303091 AAACCGATGTTGGCTACCGC 61.303 55.000 0.00 0.00 34.13 5.68
3585 8903 2.125310 CCGATGTTGGCTACCGCA 60.125 61.111 0.00 0.00 38.10 5.69
3586 8904 2.461110 CCGATGTTGGCTACCGCAC 61.461 63.158 0.00 0.00 38.10 5.34
3587 8905 2.798501 CGATGTTGGCTACCGCACG 61.799 63.158 0.00 0.00 38.10 5.34
3588 8906 3.095898 GATGTTGGCTACCGCACGC 62.096 63.158 0.00 0.00 38.10 5.34
3589 8907 3.605749 ATGTTGGCTACCGCACGCT 62.606 57.895 0.00 0.00 38.10 5.07
3590 8908 2.125832 GTTGGCTACCGCACGCTA 60.126 61.111 0.00 0.00 38.10 4.26
3591 8909 1.738830 GTTGGCTACCGCACGCTAA 60.739 57.895 0.00 0.00 38.10 3.09
3592 8910 1.004799 TTGGCTACCGCACGCTAAA 60.005 52.632 0.00 0.00 38.10 1.85
3593 8911 0.603172 TTGGCTACCGCACGCTAAAA 60.603 50.000 0.00 0.00 38.10 1.52
3594 8912 1.017177 TGGCTACCGCACGCTAAAAG 61.017 55.000 0.00 0.00 38.10 2.27
3595 8913 1.017701 GGCTACCGCACGCTAAAAGT 61.018 55.000 0.00 0.00 38.10 2.66
3596 8914 0.094730 GCTACCGCACGCTAAAAGTG 59.905 55.000 0.00 0.00 42.15 3.16
3604 8922 3.439932 CACGCTAAAAGTGCTACAGTG 57.560 47.619 0.00 0.00 32.52 3.66
3605 8923 2.157668 CACGCTAAAAGTGCTACAGTGG 59.842 50.000 0.00 0.00 32.52 4.00
3606 8924 1.128692 CGCTAAAAGTGCTACAGTGGC 59.871 52.381 0.99 0.99 0.00 5.01
3607 8925 1.128692 GCTAAAAGTGCTACAGTGGCG 59.871 52.381 4.21 0.00 0.00 5.69
3608 8926 1.128692 CTAAAAGTGCTACAGTGGCGC 59.871 52.381 14.31 14.31 40.08 6.53
3610 8928 2.047844 AGTGCTACAGTGGCGCTG 60.048 61.111 22.93 25.57 46.77 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.815003 GAGGTTAGGGTTTCTCGTCGA 59.185 52.381 0.00 0.00 0.00 4.20
29 30 2.100631 CGCCAAATCCTCGAAGCGT 61.101 57.895 0.00 0.00 38.81 5.07
34 35 0.179056 GATTCCCGCCAAATCCTCGA 60.179 55.000 0.00 0.00 0.00 4.04
35 36 0.179045 AGATTCCCGCCAAATCCTCG 60.179 55.000 0.00 0.00 34.34 4.63
36 37 2.495084 GTAGATTCCCGCCAAATCCTC 58.505 52.381 0.00 0.00 34.34 3.71
41 42 4.211986 GCGTAGATTCCCGCCAAA 57.788 55.556 6.98 0.00 43.96 3.28
47 48 1.757699 AGAGTTCTGGCGTAGATTCCC 59.242 52.381 0.00 0.00 34.80 3.97
63 64 3.619483 CGTCGAGACAGATTAGACAGAGT 59.381 47.826 4.02 0.00 32.57 3.24
67 68 3.181523 CGTTCGTCGAGACAGATTAGACA 60.182 47.826 4.02 0.00 42.86 3.41
111 112 4.148563 TCTTCTTCGAGTCAGTCTTTCG 57.851 45.455 0.00 0.00 35.76 3.46
113 114 4.202161 TGCTTCTTCTTCGAGTCAGTCTTT 60.202 41.667 0.00 0.00 0.00 2.52
114 115 3.319405 TGCTTCTTCTTCGAGTCAGTCTT 59.681 43.478 0.00 0.00 0.00 3.01
121 122 2.605823 CGTCAGTGCTTCTTCTTCGAGT 60.606 50.000 0.00 0.00 0.00 4.18
124 125 1.716581 GACGTCAGTGCTTCTTCTTCG 59.283 52.381 11.55 0.00 0.00 3.79
133 134 4.039357 CGGACGGACGTCAGTGCT 62.039 66.667 30.37 7.80 46.20 4.40
134 135 3.948086 CTCGGACGGACGTCAGTGC 62.948 68.421 26.02 25.95 46.20 4.40
135 136 2.176055 CTCGGACGGACGTCAGTG 59.824 66.667 26.02 17.34 46.20 3.66
136 137 3.735029 GCTCGGACGGACGTCAGT 61.735 66.667 21.46 21.46 46.20 3.41
137 138 4.813526 CGCTCGGACGGACGTCAG 62.814 72.222 24.00 20.41 46.20 3.51
163 164 6.430007 AGATAGGTAGGGTTTTAGTTCTCGA 58.570 40.000 0.00 0.00 0.00 4.04
178 179 3.579151 GGTCCCTTGGCTTAGATAGGTAG 59.421 52.174 0.00 0.00 0.00 3.18
181 182 2.370189 CTGGTCCCTTGGCTTAGATAGG 59.630 54.545 0.00 0.00 0.00 2.57
197 198 3.462678 GGCGAGGAGGGTCTGGTC 61.463 72.222 0.00 0.00 0.00 4.02
202 207 3.775654 CAGGTGGCGAGGAGGGTC 61.776 72.222 0.00 0.00 0.00 4.46
278 283 3.614390 CGACTAGTGAAAGACTTCCACCC 60.614 52.174 0.00 0.00 35.96 4.61
280 285 2.987821 GCGACTAGTGAAAGACTTCCAC 59.012 50.000 0.00 0.00 35.96 4.02
281 286 2.029290 GGCGACTAGTGAAAGACTTCCA 60.029 50.000 0.00 0.00 35.96 3.53
405 411 7.002816 ACAAGTACAATGTTTCGTTTCGTTA 57.997 32.000 0.00 0.00 0.00 3.18
408 414 9.749490 ATTATACAAGTACAATGTTTCGTTTCG 57.251 29.630 9.26 0.00 32.27 3.46
468 474 5.480073 GGAATGAGCCATAGTCATCTCTAGT 59.520 44.000 0.00 0.00 33.34 2.57
471 477 4.283978 CAGGAATGAGCCATAGTCATCTCT 59.716 45.833 0.00 0.00 33.34 3.10
479 485 6.291648 TCTAATAGCAGGAATGAGCCATAG 57.708 41.667 0.00 0.00 0.00 2.23
492 498 9.874205 TTTCCAAATCCAAAAATCTAATAGCAG 57.126 29.630 0.00 0.00 0.00 4.24
590 622 9.871238 TTCATCTAGTTAGACTTATGAACCAAC 57.129 33.333 11.40 0.00 35.91 3.77
630 662 0.972471 AAGCTTAGCACAATGCCCCC 60.972 55.000 7.07 0.00 46.52 5.40
631 663 1.405463 GTAAGCTTAGCACAATGCCCC 59.595 52.381 6.38 0.00 46.52 5.80
632 664 2.369394 AGTAAGCTTAGCACAATGCCC 58.631 47.619 6.38 0.00 46.52 5.36
633 665 4.034510 CACTAGTAAGCTTAGCACAATGCC 59.965 45.833 6.38 0.00 46.52 4.40
634 666 4.494855 GCACTAGTAAGCTTAGCACAATGC 60.495 45.833 6.38 8.73 45.46 3.56
680 712 5.631929 GGTGGTCCATTCAAACGTATTTTTC 59.368 40.000 0.00 0.00 0.00 2.29
697 729 7.121759 TCGCTATATACTGTATTTAGGTGGTCC 59.878 40.741 19.89 7.40 0.00 4.46
698 730 7.967303 GTCGCTATATACTGTATTTAGGTGGTC 59.033 40.741 19.89 7.89 0.00 4.02
699 731 7.449395 TGTCGCTATATACTGTATTTAGGTGGT 59.551 37.037 19.89 0.00 0.00 4.16
700 732 7.823665 TGTCGCTATATACTGTATTTAGGTGG 58.176 38.462 19.89 3.87 0.00 4.61
709 741 9.503399 CCATCCTATATGTCGCTATATACTGTA 57.497 37.037 0.00 0.00 0.00 2.74
711 743 7.665974 TCCCATCCTATATGTCGCTATATACTG 59.334 40.741 0.00 0.00 0.00 2.74
712 744 7.666388 GTCCCATCCTATATGTCGCTATATACT 59.334 40.741 0.00 0.00 0.00 2.12
713 745 7.361031 CGTCCCATCCTATATGTCGCTATATAC 60.361 44.444 0.00 0.00 0.00 1.47
724 3978 5.420421 AGATTCTCACGTCCCATCCTATATG 59.580 44.000 0.00 0.00 0.00 1.78
823 4077 2.525422 GGGAAACGACCGTTGACTC 58.475 57.895 8.64 3.08 38.47 3.36
836 4090 0.322456 CCAGTCAGATTGGCGGGAAA 60.322 55.000 0.00 0.00 39.78 3.13
861 4116 2.031870 TGTGAGAGGGACATATCGTGG 58.968 52.381 0.00 0.00 0.00 4.94
863 4118 2.032620 GGTGTGAGAGGGACATATCGT 58.967 52.381 0.00 0.00 0.00 3.73
931 4186 3.670625 CTGAGGATTACCGTGTGGAAAA 58.329 45.455 0.00 0.00 41.83 2.29
952 4207 5.295540 GCAGAGCTATTAATAATGGCCTAGC 59.704 44.000 16.09 13.43 45.42 3.42
955 4210 5.250313 AGAGCAGAGCTATTAATAATGGCCT 59.750 40.000 16.09 10.84 45.42 5.19
960 4215 6.296145 GGGTGGAGAGCAGAGCTATTAATAAT 60.296 42.308 0.00 0.00 39.88 1.28
973 4228 2.985456 GAGGTGGGTGGAGAGCAG 59.015 66.667 0.00 0.00 0.00 4.24
1011 4266 1.911766 GGTCGTGTGGGGAGGAAGA 60.912 63.158 0.00 0.00 0.00 2.87
1037 4292 2.545731 GCCATTGTCACCAAACGTTTT 58.454 42.857 11.66 0.00 33.44 2.43
1096 4351 2.438614 TGGCGAGAGAGACGAGGG 60.439 66.667 0.00 0.00 0.00 4.30
1133 4388 0.174389 CGTCATAGCACTGGACAGCT 59.826 55.000 0.00 0.00 44.55 4.24
1247 4502 4.215908 AGGTTGTATTCTCAGCGAGGATA 58.784 43.478 5.87 4.57 29.62 2.59
1256 4511 2.417379 GCTGCTCGAGGTTGTATTCTCA 60.417 50.000 15.58 0.00 0.00 3.27
1355 4610 3.573229 TGGTGCTTGCCCTGCTCT 61.573 61.111 0.00 0.00 0.00 4.09
1394 4649 2.537560 CCCGATGATCCAGTTGCGC 61.538 63.158 0.00 0.00 0.00 6.09
1424 4679 3.781770 GATGACGCCAGCGAGGGAG 62.782 68.421 20.32 0.00 42.83 4.30
2590 5920 1.070821 CTACACACAGTCACGCATGG 58.929 55.000 0.00 0.00 0.00 3.66
2673 6303 0.114364 AAAATGGTCGGGCCTCCTTT 59.886 50.000 0.84 11.43 38.35 3.11
2680 6310 3.057174 TCATTTGTGTAAAATGGTCGGGC 60.057 43.478 10.10 0.00 0.00 6.13
2681 6311 4.775058 TCATTTGTGTAAAATGGTCGGG 57.225 40.909 10.10 0.00 0.00 5.14
2918 8191 1.848652 TCTCCACTACTACCACCAGC 58.151 55.000 0.00 0.00 0.00 4.85
2925 8198 7.826918 ATTATCTCCAGTTCTCCACTACTAC 57.173 40.000 0.00 0.00 32.76 2.73
2926 8199 8.946248 TCTATTATCTCCAGTTCTCCACTACTA 58.054 37.037 0.00 0.00 32.76 1.82
2927 8200 7.722285 GTCTATTATCTCCAGTTCTCCACTACT 59.278 40.741 0.00 0.00 32.76 2.57
2937 8210 3.641906 CCGGTGGTCTATTATCTCCAGTT 59.358 47.826 0.00 0.00 0.00 3.16
2946 8219 4.217767 CGATTCTGATCCGGTGGTCTATTA 59.782 45.833 0.00 0.00 0.00 0.98
3003 8279 2.807895 GCGCGGCGACTTGTCTTA 60.808 61.111 28.54 0.00 0.00 2.10
3043 8339 2.217750 TGCAGCGAACACAAATACTGT 58.782 42.857 0.00 0.00 39.56 3.55
3044 8340 2.967459 TGCAGCGAACACAAATACTG 57.033 45.000 0.00 0.00 0.00 2.74
3045 8341 3.125829 CAGATGCAGCGAACACAAATACT 59.874 43.478 0.00 0.00 0.00 2.12
3046 8342 3.120199 ACAGATGCAGCGAACACAAATAC 60.120 43.478 0.00 0.00 0.00 1.89
3047 8343 3.073678 ACAGATGCAGCGAACACAAATA 58.926 40.909 0.00 0.00 0.00 1.40
3127 8423 7.243487 AGATTTTCGCATATATAATTGCACCG 58.757 34.615 8.62 0.00 38.80 4.94
3208 8507 0.333312 TCGGCTTCTTCCTCCTCTCT 59.667 55.000 0.00 0.00 0.00 3.10
3210 8509 0.040499 AGTCGGCTTCTTCCTCCTCT 59.960 55.000 0.00 0.00 0.00 3.69
3266 8584 8.325997 GTGATTGATGTAAGTTGGATACGTAAC 58.674 37.037 0.00 0.00 42.51 2.50
3267 8585 7.493320 GGTGATTGATGTAAGTTGGATACGTAA 59.507 37.037 0.00 0.00 42.51 3.18
3269 8587 5.815740 GGTGATTGATGTAAGTTGGATACGT 59.184 40.000 0.00 0.00 42.51 3.57
3270 8588 6.049149 AGGTGATTGATGTAAGTTGGATACG 58.951 40.000 0.00 0.00 42.51 3.06
3271 8589 6.483640 GGAGGTGATTGATGTAAGTTGGATAC 59.516 42.308 0.00 0.00 0.00 2.24
3272 8590 6.386927 AGGAGGTGATTGATGTAAGTTGGATA 59.613 38.462 0.00 0.00 0.00 2.59
3273 8591 5.192522 AGGAGGTGATTGATGTAAGTTGGAT 59.807 40.000 0.00 0.00 0.00 3.41
3274 8592 4.536090 AGGAGGTGATTGATGTAAGTTGGA 59.464 41.667 0.00 0.00 0.00 3.53
3275 8593 4.848357 AGGAGGTGATTGATGTAAGTTGG 58.152 43.478 0.00 0.00 0.00 3.77
3276 8594 6.127897 GGAAAGGAGGTGATTGATGTAAGTTG 60.128 42.308 0.00 0.00 0.00 3.16
3277 8595 5.946377 GGAAAGGAGGTGATTGATGTAAGTT 59.054 40.000 0.00 0.00 0.00 2.66
3278 8596 5.251700 AGGAAAGGAGGTGATTGATGTAAGT 59.748 40.000 0.00 0.00 0.00 2.24
3279 8597 5.749462 AGGAAAGGAGGTGATTGATGTAAG 58.251 41.667 0.00 0.00 0.00 2.34
3280 8598 5.779241 AGGAAAGGAGGTGATTGATGTAA 57.221 39.130 0.00 0.00 0.00 2.41
3281 8599 6.884472 TTAGGAAAGGAGGTGATTGATGTA 57.116 37.500 0.00 0.00 0.00 2.29
3282 8600 5.779241 TTAGGAAAGGAGGTGATTGATGT 57.221 39.130 0.00 0.00 0.00 3.06
3283 8601 5.009410 GCATTAGGAAAGGAGGTGATTGATG 59.991 44.000 0.00 0.00 0.00 3.07
3284 8602 5.136105 GCATTAGGAAAGGAGGTGATTGAT 58.864 41.667 0.00 0.00 0.00 2.57
3285 8603 4.526970 GCATTAGGAAAGGAGGTGATTGA 58.473 43.478 0.00 0.00 0.00 2.57
3286 8604 3.633986 GGCATTAGGAAAGGAGGTGATTG 59.366 47.826 0.00 0.00 0.00 2.67
3287 8605 3.373110 GGGCATTAGGAAAGGAGGTGATT 60.373 47.826 0.00 0.00 0.00 2.57
3288 8606 2.175715 GGGCATTAGGAAAGGAGGTGAT 59.824 50.000 0.00 0.00 0.00 3.06
3289 8607 1.564348 GGGCATTAGGAAAGGAGGTGA 59.436 52.381 0.00 0.00 0.00 4.02
3290 8608 1.566231 AGGGCATTAGGAAAGGAGGTG 59.434 52.381 0.00 0.00 0.00 4.00
3291 8609 1.987080 AGGGCATTAGGAAAGGAGGT 58.013 50.000 0.00 0.00 0.00 3.85
3292 8610 2.511637 AGAAGGGCATTAGGAAAGGAGG 59.488 50.000 0.00 0.00 0.00 4.30
3293 8611 3.200825 TGAGAAGGGCATTAGGAAAGGAG 59.799 47.826 0.00 0.00 0.00 3.69
3294 8612 3.189606 TGAGAAGGGCATTAGGAAAGGA 58.810 45.455 0.00 0.00 0.00 3.36
3295 8613 3.652057 TGAGAAGGGCATTAGGAAAGG 57.348 47.619 0.00 0.00 0.00 3.11
3296 8614 4.202090 GCATTGAGAAGGGCATTAGGAAAG 60.202 45.833 0.00 0.00 0.00 2.62
3297 8615 3.701040 GCATTGAGAAGGGCATTAGGAAA 59.299 43.478 0.00 0.00 0.00 3.13
3298 8616 3.053395 AGCATTGAGAAGGGCATTAGGAA 60.053 43.478 0.00 0.00 0.00 3.36
3299 8617 2.511218 AGCATTGAGAAGGGCATTAGGA 59.489 45.455 0.00 0.00 0.00 2.94
3300 8618 2.883386 GAGCATTGAGAAGGGCATTAGG 59.117 50.000 0.00 0.00 0.00 2.69
3301 8619 2.883386 GGAGCATTGAGAAGGGCATTAG 59.117 50.000 0.00 0.00 0.00 1.73
3302 8620 2.241941 TGGAGCATTGAGAAGGGCATTA 59.758 45.455 0.00 0.00 0.00 1.90
3303 8621 1.006281 TGGAGCATTGAGAAGGGCATT 59.994 47.619 0.00 0.00 0.00 3.56
3304 8622 0.627451 TGGAGCATTGAGAAGGGCAT 59.373 50.000 0.00 0.00 0.00 4.40
3305 8623 0.322816 GTGGAGCATTGAGAAGGGCA 60.323 55.000 0.00 0.00 0.00 5.36
3306 8624 1.034292 GGTGGAGCATTGAGAAGGGC 61.034 60.000 0.00 0.00 0.00 5.19
3307 8625 0.394899 GGGTGGAGCATTGAGAAGGG 60.395 60.000 0.00 0.00 0.00 3.95
3308 8626 0.622665 AGGGTGGAGCATTGAGAAGG 59.377 55.000 0.00 0.00 0.00 3.46
3309 8627 1.004044 ACAGGGTGGAGCATTGAGAAG 59.996 52.381 0.00 0.00 0.00 2.85
3310 8628 1.067295 ACAGGGTGGAGCATTGAGAA 58.933 50.000 0.00 0.00 0.00 2.87
3311 8629 1.555075 GTACAGGGTGGAGCATTGAGA 59.445 52.381 0.00 0.00 0.00 3.27
3312 8630 1.407437 GGTACAGGGTGGAGCATTGAG 60.407 57.143 0.00 0.00 0.00 3.02
3313 8631 0.618458 GGTACAGGGTGGAGCATTGA 59.382 55.000 0.00 0.00 0.00 2.57
3314 8632 0.744414 CGGTACAGGGTGGAGCATTG 60.744 60.000 0.00 0.00 0.00 2.82
3315 8633 1.602237 CGGTACAGGGTGGAGCATT 59.398 57.895 0.00 0.00 0.00 3.56
3316 8634 2.367202 CCGGTACAGGGTGGAGCAT 61.367 63.158 3.79 0.00 0.00 3.79
3317 8635 3.000819 CCGGTACAGGGTGGAGCA 61.001 66.667 3.79 0.00 0.00 4.26
3318 8636 3.782443 CCCGGTACAGGGTGGAGC 61.782 72.222 21.96 0.00 46.38 4.70
3325 8643 0.680061 GCTCTTATCCCCGGTACAGG 59.320 60.000 4.87 4.87 0.00 4.00
3326 8644 1.410004 TGCTCTTATCCCCGGTACAG 58.590 55.000 0.00 0.00 0.00 2.74
3327 8645 1.968493 GATGCTCTTATCCCCGGTACA 59.032 52.381 0.00 0.00 0.00 2.90
3328 8646 2.249139 AGATGCTCTTATCCCCGGTAC 58.751 52.381 0.00 0.00 0.00 3.34
3329 8647 2.696526 AGATGCTCTTATCCCCGGTA 57.303 50.000 0.00 0.00 0.00 4.02
3330 8648 1.694696 GAAGATGCTCTTATCCCCGGT 59.305 52.381 0.00 0.00 36.73 5.28
3331 8649 1.694150 TGAAGATGCTCTTATCCCCGG 59.306 52.381 0.00 0.00 36.73 5.73
3332 8650 3.134458 GTTGAAGATGCTCTTATCCCCG 58.866 50.000 0.00 0.00 36.73 5.73
3333 8651 3.134458 CGTTGAAGATGCTCTTATCCCC 58.866 50.000 0.00 0.00 36.73 4.81
3334 8652 3.134458 CCGTTGAAGATGCTCTTATCCC 58.866 50.000 0.00 0.00 36.73 3.85
3335 8653 3.804873 GTCCGTTGAAGATGCTCTTATCC 59.195 47.826 0.00 0.00 36.73 2.59
3336 8654 4.268884 GTGTCCGTTGAAGATGCTCTTATC 59.731 45.833 0.00 0.00 36.73 1.75
3337 8655 4.184629 GTGTCCGTTGAAGATGCTCTTAT 58.815 43.478 0.00 0.00 36.73 1.73
3338 8656 3.585862 GTGTCCGTTGAAGATGCTCTTA 58.414 45.455 0.00 0.00 36.73 2.10
3339 8657 2.417719 GTGTCCGTTGAAGATGCTCTT 58.582 47.619 0.00 0.00 39.87 2.85
3340 8658 1.670087 CGTGTCCGTTGAAGATGCTCT 60.670 52.381 0.00 0.00 0.00 4.09
3341 8659 0.716108 CGTGTCCGTTGAAGATGCTC 59.284 55.000 0.00 0.00 0.00 4.26
3342 8660 2.827604 CGTGTCCGTTGAAGATGCT 58.172 52.632 0.00 0.00 0.00 3.79
3353 8671 1.193874 GGAGCAGTTTTTACGTGTCCG 59.806 52.381 0.00 0.00 40.83 4.79
3354 8672 2.032290 GTGGAGCAGTTTTTACGTGTCC 60.032 50.000 0.00 0.00 0.00 4.02
3355 8673 2.348218 CGTGGAGCAGTTTTTACGTGTC 60.348 50.000 0.00 0.00 0.00 3.67
3356 8674 1.595794 CGTGGAGCAGTTTTTACGTGT 59.404 47.619 0.00 0.00 0.00 4.49
3357 8675 2.294479 CGTGGAGCAGTTTTTACGTG 57.706 50.000 0.00 0.00 0.00 4.49
3369 8687 2.027625 AGTGTTTAGCGCGTGGAGC 61.028 57.895 8.43 0.00 43.95 4.70
3370 8688 0.944311 ACAGTGTTTAGCGCGTGGAG 60.944 55.000 8.43 0.00 0.00 3.86
3371 8689 0.531090 AACAGTGTTTAGCGCGTGGA 60.531 50.000 8.43 0.00 0.00 4.02
3372 8690 0.110823 GAACAGTGTTTAGCGCGTGG 60.111 55.000 10.45 0.00 0.00 4.94
3373 8691 0.859232 AGAACAGTGTTTAGCGCGTG 59.141 50.000 10.45 0.00 0.00 5.34
3374 8692 1.578583 AAGAACAGTGTTTAGCGCGT 58.421 45.000 10.45 0.00 0.00 6.01
3375 8693 2.663279 AAAGAACAGTGTTTAGCGCG 57.337 45.000 10.45 0.00 0.00 6.86
3376 8694 4.909880 CCTAAAAAGAACAGTGTTTAGCGC 59.090 41.667 10.45 0.00 33.92 5.92
3377 8695 4.909880 GCCTAAAAAGAACAGTGTTTAGCG 59.090 41.667 10.45 3.59 33.92 4.26
3378 8696 4.909880 CGCCTAAAAAGAACAGTGTTTAGC 59.090 41.667 10.45 0.00 33.92 3.09
3379 8697 4.909880 GCGCCTAAAAAGAACAGTGTTTAG 59.090 41.667 10.45 7.27 34.66 1.85
3380 8698 4.335874 TGCGCCTAAAAAGAACAGTGTTTA 59.664 37.500 10.45 0.00 0.00 2.01
3381 8699 3.129638 TGCGCCTAAAAAGAACAGTGTTT 59.870 39.130 10.45 0.00 0.00 2.83
3382 8700 2.685897 TGCGCCTAAAAAGAACAGTGTT 59.314 40.909 8.61 8.61 0.00 3.32
3383 8701 2.290641 CTGCGCCTAAAAAGAACAGTGT 59.709 45.455 4.18 0.00 0.00 3.55
3384 8702 2.548057 TCTGCGCCTAAAAAGAACAGTG 59.452 45.455 4.18 0.00 0.00 3.66
3385 8703 2.808543 CTCTGCGCCTAAAAAGAACAGT 59.191 45.455 4.18 0.00 0.00 3.55
3386 8704 3.067106 TCTCTGCGCCTAAAAAGAACAG 58.933 45.455 4.18 0.00 0.00 3.16
3387 8705 2.806244 GTCTCTGCGCCTAAAAAGAACA 59.194 45.455 4.18 0.00 0.00 3.18
3388 8706 2.159827 CGTCTCTGCGCCTAAAAAGAAC 60.160 50.000 4.18 0.80 0.00 3.01
3389 8707 2.066262 CGTCTCTGCGCCTAAAAAGAA 58.934 47.619 4.18 0.00 0.00 2.52
3390 8708 1.710013 CGTCTCTGCGCCTAAAAAGA 58.290 50.000 4.18 0.00 0.00 2.52
3400 8718 1.515952 CTCTTGGAGCGTCTCTGCG 60.516 63.158 6.78 0.00 40.67 5.18
3401 8719 0.459489 ATCTCTTGGAGCGTCTCTGC 59.541 55.000 6.78 0.00 0.00 4.26
3402 8720 1.802136 GCATCTCTTGGAGCGTCTCTG 60.802 57.143 6.78 0.00 0.00 3.35
3403 8721 0.459489 GCATCTCTTGGAGCGTCTCT 59.541 55.000 6.78 0.00 0.00 3.10
3404 8722 0.459489 AGCATCTCTTGGAGCGTCTC 59.541 55.000 0.00 0.00 0.00 3.36
3405 8723 1.407258 GTAGCATCTCTTGGAGCGTCT 59.593 52.381 0.00 0.00 0.00 4.18
3406 8724 1.135139 TGTAGCATCTCTTGGAGCGTC 59.865 52.381 0.00 0.00 0.00 5.19
3407 8725 1.186200 TGTAGCATCTCTTGGAGCGT 58.814 50.000 0.00 0.00 0.00 5.07
3408 8726 2.299993 TTGTAGCATCTCTTGGAGCG 57.700 50.000 0.00 0.00 0.00 5.03
3409 8727 3.753272 TGTTTTGTAGCATCTCTTGGAGC 59.247 43.478 0.00 0.00 0.00 4.70
3410 8728 4.999950 ACTGTTTTGTAGCATCTCTTGGAG 59.000 41.667 0.00 0.00 0.00 3.86
3411 8729 4.756642 CACTGTTTTGTAGCATCTCTTGGA 59.243 41.667 0.00 0.00 0.00 3.53
3412 8730 4.614535 GCACTGTTTTGTAGCATCTCTTGG 60.615 45.833 0.00 0.00 0.00 3.61
3413 8731 4.470462 GCACTGTTTTGTAGCATCTCTTG 58.530 43.478 0.00 0.00 0.00 3.02
3414 8732 3.187227 CGCACTGTTTTGTAGCATCTCTT 59.813 43.478 0.00 0.00 0.00 2.85
3415 8733 2.738846 CGCACTGTTTTGTAGCATCTCT 59.261 45.455 0.00 0.00 0.00 3.10
3416 8734 2.480419 ACGCACTGTTTTGTAGCATCTC 59.520 45.455 0.00 0.00 0.00 2.75
3417 8735 2.224079 CACGCACTGTTTTGTAGCATCT 59.776 45.455 0.00 0.00 0.00 2.90
3418 8736 2.574322 CACGCACTGTTTTGTAGCATC 58.426 47.619 0.00 0.00 0.00 3.91
3419 8737 1.334960 GCACGCACTGTTTTGTAGCAT 60.335 47.619 0.00 0.00 0.00 3.79
3420 8738 0.028770 GCACGCACTGTTTTGTAGCA 59.971 50.000 0.00 0.00 0.00 3.49
3421 8739 0.991770 CGCACGCACTGTTTTGTAGC 60.992 55.000 0.00 0.00 0.00 3.58
3422 8740 0.991770 GCGCACGCACTGTTTTGTAG 60.992 55.000 10.65 0.00 41.49 2.74
3423 8741 1.010574 GCGCACGCACTGTTTTGTA 60.011 52.632 10.65 0.00 41.49 2.41
3424 8742 2.277884 GCGCACGCACTGTTTTGT 60.278 55.556 10.65 0.00 41.49 2.83
3472 8790 4.046462 CCCAAATTTTCAGCATGCGATAG 58.954 43.478 13.01 4.07 34.76 2.08
3473 8791 3.698539 TCCCAAATTTTCAGCATGCGATA 59.301 39.130 13.01 5.39 34.76 2.92
3474 8792 2.496871 TCCCAAATTTTCAGCATGCGAT 59.503 40.909 13.01 0.00 34.76 4.58
3475 8793 1.891811 TCCCAAATTTTCAGCATGCGA 59.108 42.857 13.01 10.08 34.76 5.10
3476 8794 2.367030 TCCCAAATTTTCAGCATGCG 57.633 45.000 13.01 7.64 34.76 4.73
3477 8795 4.122046 GGTATCCCAAATTTTCAGCATGC 58.878 43.478 10.51 10.51 34.76 4.06
3478 8796 5.341872 TGGTATCCCAAATTTTCAGCATG 57.658 39.130 0.00 0.00 37.98 4.06
3491 8809 2.437002 GCGCGGTTTGGTATCCCA 60.437 61.111 8.83 0.00 39.65 4.37
3492 8810 3.569690 CGCGCGGTTTGGTATCCC 61.570 66.667 24.84 0.00 0.00 3.85
3493 8811 4.232248 GCGCGCGGTTTGGTATCC 62.232 66.667 33.06 6.44 0.00 2.59
3494 8812 4.568876 CGCGCGCGGTTTGGTATC 62.569 66.667 43.28 10.21 35.56 2.24
3505 8823 1.579808 TGCAAATTATAAAACGCGCGC 59.420 42.857 32.58 23.91 0.00 6.86
3506 8824 2.843643 AGTGCAAATTATAAAACGCGCG 59.156 40.909 30.96 30.96 35.15 6.86
3507 8825 3.539401 GCAGTGCAAATTATAAAACGCGC 60.539 43.478 11.09 0.00 0.00 6.86
3508 8826 3.300253 CGCAGTGCAAATTATAAAACGCG 60.300 43.478 16.83 3.53 0.00 6.01
3509 8827 3.606346 ACGCAGTGCAAATTATAAAACGC 59.394 39.130 16.83 0.00 42.51 4.84
3549 8867 4.145807 TCGGTTTTCTAGATGCCCAAAAA 58.854 39.130 0.00 0.00 0.00 1.94
3550 8868 3.757270 TCGGTTTTCTAGATGCCCAAAA 58.243 40.909 0.00 0.00 0.00 2.44
3551 8869 3.426787 TCGGTTTTCTAGATGCCCAAA 57.573 42.857 0.00 0.00 0.00 3.28
3552 8870 3.278574 CATCGGTTTTCTAGATGCCCAA 58.721 45.455 0.00 0.00 35.89 4.12
3553 8871 2.238646 ACATCGGTTTTCTAGATGCCCA 59.761 45.455 0.00 0.00 43.91 5.36
3554 8872 2.919228 ACATCGGTTTTCTAGATGCCC 58.081 47.619 0.00 0.00 43.91 5.36
3555 8873 3.065371 CCAACATCGGTTTTCTAGATGCC 59.935 47.826 0.00 0.00 43.91 4.40
3556 8874 3.487544 GCCAACATCGGTTTTCTAGATGC 60.488 47.826 0.00 0.00 43.91 3.91
3557 8875 3.941483 AGCCAACATCGGTTTTCTAGATG 59.059 43.478 0.00 3.46 45.14 2.90
3558 8876 4.222124 AGCCAACATCGGTTTTCTAGAT 57.778 40.909 0.00 0.00 34.21 1.98
3559 8877 3.695830 AGCCAACATCGGTTTTCTAGA 57.304 42.857 0.00 0.00 34.21 2.43
3560 8878 3.621715 GGTAGCCAACATCGGTTTTCTAG 59.378 47.826 0.00 0.00 34.21 2.43
3561 8879 3.602483 GGTAGCCAACATCGGTTTTCTA 58.398 45.455 0.00 0.00 34.21 2.10
3562 8880 2.433436 GGTAGCCAACATCGGTTTTCT 58.567 47.619 0.00 0.00 34.21 2.52
3563 8881 1.129811 CGGTAGCCAACATCGGTTTTC 59.870 52.381 0.00 0.00 34.21 2.29
3564 8882 1.161843 CGGTAGCCAACATCGGTTTT 58.838 50.000 0.00 0.00 34.21 2.43
3565 8883 1.303091 GCGGTAGCCAACATCGGTTT 61.303 55.000 0.00 0.00 34.21 3.27
3566 8884 1.743995 GCGGTAGCCAACATCGGTT 60.744 57.895 0.00 0.00 37.87 4.44
3567 8885 2.125269 GCGGTAGCCAACATCGGT 60.125 61.111 0.00 0.00 37.42 4.69
3568 8886 2.125310 TGCGGTAGCCAACATCGG 60.125 61.111 0.00 0.00 44.33 4.18
3569 8887 2.798501 CGTGCGGTAGCCAACATCG 61.799 63.158 0.00 0.00 44.33 3.84
3570 8888 3.089784 CGTGCGGTAGCCAACATC 58.910 61.111 0.00 0.00 44.33 3.06
3571 8889 2.233605 TAGCGTGCGGTAGCCAACAT 62.234 55.000 0.00 0.00 44.33 2.71
3572 8890 2.437518 TTAGCGTGCGGTAGCCAACA 62.438 55.000 3.79 0.00 44.33 3.33
3573 8891 1.293267 TTTAGCGTGCGGTAGCCAAC 61.293 55.000 3.79 0.00 44.33 3.77
3574 8892 0.603172 TTTTAGCGTGCGGTAGCCAA 60.603 50.000 3.79 0.00 44.33 4.52
3575 8893 1.004799 TTTTAGCGTGCGGTAGCCA 60.005 52.632 3.79 0.00 44.33 4.75
3576 8894 1.017701 ACTTTTAGCGTGCGGTAGCC 61.018 55.000 3.79 0.00 44.33 3.93
3577 8895 0.094730 CACTTTTAGCGTGCGGTAGC 59.905 55.000 3.79 0.00 45.41 3.58
3578 8896 0.094730 GCACTTTTAGCGTGCGGTAG 59.905 55.000 3.79 0.00 46.81 3.18
3579 8897 2.155665 GCACTTTTAGCGTGCGGTA 58.844 52.632 0.00 0.00 46.81 4.02
3580 8898 2.943653 GCACTTTTAGCGTGCGGT 59.056 55.556 1.16 1.16 46.81 5.68
3584 8902 2.157668 CCACTGTAGCACTTTTAGCGTG 59.842 50.000 0.00 0.00 37.01 5.34
3585 8903 2.413837 CCACTGTAGCACTTTTAGCGT 58.586 47.619 0.00 0.00 37.01 5.07
3586 8904 1.128692 GCCACTGTAGCACTTTTAGCG 59.871 52.381 0.00 0.00 37.01 4.26
3587 8905 1.128692 CGCCACTGTAGCACTTTTAGC 59.871 52.381 0.00 0.00 0.00 3.09
3588 8906 1.128692 GCGCCACTGTAGCACTTTTAG 59.871 52.381 0.00 0.00 0.00 1.85
3589 8907 1.153353 GCGCCACTGTAGCACTTTTA 58.847 50.000 0.00 0.00 0.00 1.52
3590 8908 0.535102 AGCGCCACTGTAGCACTTTT 60.535 50.000 2.29 0.00 0.00 2.27
3591 8909 1.071471 AGCGCCACTGTAGCACTTT 59.929 52.632 2.29 0.00 0.00 2.66
3592 8910 1.669115 CAGCGCCACTGTAGCACTT 60.669 57.895 2.29 0.00 41.86 3.16
3593 8911 2.047844 CAGCGCCACTGTAGCACT 60.048 61.111 2.29 0.00 41.86 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.