Multiple sequence alignment - TraesCS7B01G122100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G122100 chr7B 100.000 2295 0 0 1 2295 143189439 143191733 0 4239
1 TraesCS7B01G122100 chr7B 96.681 452 15 0 1 452 247649127 247648676 0 752
2 TraesCS7B01G122100 chr7B 96.667 450 15 0 1 450 143181559 143182008 0 749
3 TraesCS7B01G122100 chr7B 96.460 452 16 0 1 452 247657399 247656948 0 747
4 TraesCS7B01G122100 chr5B 96.687 1841 59 2 457 2295 538727503 538729343 0 3061
5 TraesCS7B01G122100 chr5B 96.632 1841 60 2 457 2295 683476157 683474317 0 3055
6 TraesCS7B01G122100 chr5B 96.469 1841 63 2 457 2295 42684013 42682173 0 3038
7 TraesCS7B01G122100 chr5B 95.600 1841 78 3 457 2295 511450053 511451892 0 2948
8 TraesCS7B01G122100 chr5B 95.492 1841 74 4 457 2295 427656745 427654912 0 2931
9 TraesCS7B01G122100 chr5B 96.681 452 15 0 1 452 20768776 20769227 0 752
10 TraesCS7B01G122100 chr5B 96.460 452 16 0 1 452 440318007 440318458 0 747
11 TraesCS7B01G122100 chr2B 95.980 1841 71 3 457 2295 152572534 152574373 0 2987
12 TraesCS7B01G122100 chr2B 95.763 1841 76 2 457 2295 215483152 215484992 0 2966
13 TraesCS7B01G122100 chr2B 96.460 452 16 0 1 452 233958612 233958161 0 747
14 TraesCS7B01G122100 chr2B 95.652 460 20 0 2 461 270328640 270328181 0 739
15 TraesCS7B01G122100 chr1B 95.824 1844 74 3 455 2295 331365575 331367418 0 2976
16 TraesCS7B01G122100 chr1B 95.652 460 20 0 1 460 149708996 149708537 0 739
17 TraesCS7B01G122100 chr6B 95.546 1841 79 3 457 2295 624871551 624873390 0 2942
18 TraesCS7B01G122100 chr6B 96.903 452 13 1 1 452 66501158 66500708 0 756


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G122100 chr7B 143189439 143191733 2294 False 4239 4239 100.000 1 2295 1 chr7B.!!$F2 2294
1 TraesCS7B01G122100 chr5B 538727503 538729343 1840 False 3061 3061 96.687 457 2295 1 chr5B.!!$F4 1838
2 TraesCS7B01G122100 chr5B 683474317 683476157 1840 True 3055 3055 96.632 457 2295 1 chr5B.!!$R3 1838
3 TraesCS7B01G122100 chr5B 42682173 42684013 1840 True 3038 3038 96.469 457 2295 1 chr5B.!!$R1 1838
4 TraesCS7B01G122100 chr5B 511450053 511451892 1839 False 2948 2948 95.600 457 2295 1 chr5B.!!$F3 1838
5 TraesCS7B01G122100 chr5B 427654912 427656745 1833 True 2931 2931 95.492 457 2295 1 chr5B.!!$R2 1838
6 TraesCS7B01G122100 chr2B 152572534 152574373 1839 False 2987 2987 95.980 457 2295 1 chr2B.!!$F1 1838
7 TraesCS7B01G122100 chr2B 215483152 215484992 1840 False 2966 2966 95.763 457 2295 1 chr2B.!!$F2 1838
8 TraesCS7B01G122100 chr1B 331365575 331367418 1843 False 2976 2976 95.824 455 2295 1 chr1B.!!$F1 1840
9 TraesCS7B01G122100 chr6B 624871551 624873390 1839 False 2942 2942 95.546 457 2295 1 chr6B.!!$F1 1838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.035056 CGCCAAGGAAAGTCCCATCT 60.035 55.0 0.0 0.0 37.19 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 2257 0.663153 ACAAAGTGGTGAAGCGCTTC 59.337 50.0 37.21 37.21 39.91 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.460995 GCGGATCTCAGGTAGGGG 58.539 66.667 0.00 0.00 0.00 4.79
18 19 2.210711 GCGGATCTCAGGTAGGGGG 61.211 68.421 0.00 0.00 0.00 5.40
19 20 1.233369 CGGATCTCAGGTAGGGGGT 59.767 63.158 0.00 0.00 0.00 4.95
20 21 0.828343 CGGATCTCAGGTAGGGGGTC 60.828 65.000 0.00 0.00 0.00 4.46
21 22 0.472161 GGATCTCAGGTAGGGGGTCC 60.472 65.000 0.00 0.00 0.00 4.46
22 23 0.472161 GATCTCAGGTAGGGGGTCCC 60.472 65.000 0.00 0.00 45.90 4.46
28 29 2.817420 AGGTAGGGGGTCCCGAACTG 62.817 65.000 0.48 0.00 44.62 3.16
31 32 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
32 33 3.948719 GGGGTCCCGAACTGTGCA 61.949 66.667 0.48 0.00 0.00 4.57
33 34 2.351276 GGGTCCCGAACTGTGCAT 59.649 61.111 0.00 0.00 0.00 3.96
34 35 1.745489 GGGTCCCGAACTGTGCATC 60.745 63.158 0.00 0.00 0.00 3.91
35 36 1.296715 GGTCCCGAACTGTGCATCT 59.703 57.895 0.00 0.00 0.00 2.90
36 37 0.535335 GGTCCCGAACTGTGCATCTA 59.465 55.000 0.00 0.00 0.00 1.98
37 38 1.471676 GGTCCCGAACTGTGCATCTAG 60.472 57.143 0.00 0.00 0.00 2.43
38 39 0.824109 TCCCGAACTGTGCATCTAGG 59.176 55.000 0.00 0.00 0.00 3.02
39 40 0.811616 CCCGAACTGTGCATCTAGGC 60.812 60.000 0.00 0.00 0.00 3.93
40 41 1.148157 CCGAACTGTGCATCTAGGCG 61.148 60.000 0.00 0.00 36.28 5.52
41 42 1.148157 CGAACTGTGCATCTAGGCGG 61.148 60.000 0.00 0.00 36.28 6.13
42 43 0.175760 GAACTGTGCATCTAGGCGGA 59.824 55.000 0.00 0.00 36.28 5.54
43 44 0.613260 AACTGTGCATCTAGGCGGAA 59.387 50.000 0.00 0.00 36.28 4.30
44 45 0.176680 ACTGTGCATCTAGGCGGAAG 59.823 55.000 0.00 0.00 36.28 3.46
45 46 0.531532 CTGTGCATCTAGGCGGAAGG 60.532 60.000 0.00 0.00 36.28 3.46
46 47 1.264749 TGTGCATCTAGGCGGAAGGT 61.265 55.000 0.00 0.00 36.28 3.50
47 48 0.750850 GTGCATCTAGGCGGAAGGTA 59.249 55.000 0.00 0.00 36.28 3.08
48 49 1.138266 GTGCATCTAGGCGGAAGGTAA 59.862 52.381 0.00 0.00 36.28 2.85
49 50 1.138266 TGCATCTAGGCGGAAGGTAAC 59.862 52.381 0.00 0.00 36.28 2.50
50 51 1.138266 GCATCTAGGCGGAAGGTAACA 59.862 52.381 0.00 0.00 41.41 2.41
51 52 2.803492 GCATCTAGGCGGAAGGTAACAG 60.803 54.545 0.00 0.00 41.41 3.16
52 53 1.481871 TCTAGGCGGAAGGTAACAGG 58.518 55.000 0.00 0.00 41.41 4.00
53 54 1.006281 TCTAGGCGGAAGGTAACAGGA 59.994 52.381 0.00 0.00 41.41 3.86
54 55 1.409427 CTAGGCGGAAGGTAACAGGAG 59.591 57.143 0.00 0.00 41.41 3.69
55 56 0.252103 AGGCGGAAGGTAACAGGAGA 60.252 55.000 0.00 0.00 41.41 3.71
56 57 0.108281 GGCGGAAGGTAACAGGAGAC 60.108 60.000 0.00 0.00 41.41 3.36
57 58 0.606604 GCGGAAGGTAACAGGAGACA 59.393 55.000 0.00 0.00 41.41 3.41
58 59 1.001633 GCGGAAGGTAACAGGAGACAA 59.998 52.381 0.00 0.00 41.41 3.18
59 60 2.931320 GCGGAAGGTAACAGGAGACAAG 60.931 54.545 0.00 0.00 41.41 3.16
60 61 2.353803 CGGAAGGTAACAGGAGACAAGG 60.354 54.545 0.00 0.00 41.41 3.61
61 62 2.027100 GGAAGGTAACAGGAGACAAGGG 60.027 54.545 0.00 0.00 41.41 3.95
62 63 2.715763 AGGTAACAGGAGACAAGGGA 57.284 50.000 0.00 0.00 41.41 4.20
63 64 2.258109 AGGTAACAGGAGACAAGGGAC 58.742 52.381 0.00 0.00 41.41 4.46
64 65 1.975680 GGTAACAGGAGACAAGGGACA 59.024 52.381 0.00 0.00 0.00 4.02
65 66 2.289506 GGTAACAGGAGACAAGGGACAC 60.290 54.545 0.00 0.00 0.00 3.67
66 67 0.393077 AACAGGAGACAAGGGACACG 59.607 55.000 0.00 0.00 0.00 4.49
67 68 0.469331 ACAGGAGACAAGGGACACGA 60.469 55.000 0.00 0.00 0.00 4.35
68 69 0.898320 CAGGAGACAAGGGACACGAT 59.102 55.000 0.00 0.00 0.00 3.73
69 70 0.898320 AGGAGACAAGGGACACGATG 59.102 55.000 0.00 0.00 0.00 3.84
70 71 0.608640 GGAGACAAGGGACACGATGT 59.391 55.000 0.00 0.00 0.00 3.06
71 72 1.002087 GGAGACAAGGGACACGATGTT 59.998 52.381 0.00 0.00 0.00 2.71
72 73 2.550208 GGAGACAAGGGACACGATGTTT 60.550 50.000 0.00 0.00 0.00 2.83
73 74 3.139077 GAGACAAGGGACACGATGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
74 75 3.551846 AGACAAGGGACACGATGTTTTT 58.448 40.909 0.00 0.00 0.00 1.94
75 76 4.710324 AGACAAGGGACACGATGTTTTTA 58.290 39.130 0.00 0.00 0.00 1.52
76 77 4.514066 AGACAAGGGACACGATGTTTTTAC 59.486 41.667 0.00 0.00 0.00 2.01
77 78 3.566742 ACAAGGGACACGATGTTTTTACC 59.433 43.478 0.00 0.00 0.00 2.85
78 79 2.786777 AGGGACACGATGTTTTTACCC 58.213 47.619 0.00 0.00 31.54 3.69
79 80 2.106857 AGGGACACGATGTTTTTACCCA 59.893 45.455 0.00 0.00 33.25 4.51
80 81 2.486592 GGGACACGATGTTTTTACCCAG 59.513 50.000 0.00 0.00 31.68 4.45
81 82 2.486592 GGACACGATGTTTTTACCCAGG 59.513 50.000 0.00 0.00 0.00 4.45
82 83 3.143728 GACACGATGTTTTTACCCAGGT 58.856 45.455 0.00 0.00 0.00 4.00
83 84 3.558033 ACACGATGTTTTTACCCAGGTT 58.442 40.909 0.00 0.00 0.00 3.50
84 85 3.566742 ACACGATGTTTTTACCCAGGTTC 59.433 43.478 0.00 0.00 0.00 3.62
85 86 2.809696 ACGATGTTTTTACCCAGGTTCG 59.190 45.455 0.00 0.00 0.00 3.95
86 87 2.160813 CGATGTTTTTACCCAGGTTCGG 59.839 50.000 0.00 0.00 0.00 4.30
94 95 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
95 96 4.148825 CAGGTTCGGGCCCTCTCG 62.149 72.222 22.43 6.49 0.00 4.04
98 99 4.452733 GTTCGGGCCCTCTCGGTG 62.453 72.222 22.43 1.43 0.00 4.94
109 110 2.696506 CCTCTCGGTGGAGGTAAAAAC 58.303 52.381 10.43 0.00 45.65 2.43
110 111 2.614734 CCTCTCGGTGGAGGTAAAAACC 60.615 54.545 10.43 0.00 45.65 3.27
111 112 2.302157 CTCTCGGTGGAGGTAAAAACCT 59.698 50.000 0.00 0.00 44.06 3.50
112 113 3.509442 TCTCGGTGGAGGTAAAAACCTA 58.491 45.455 0.00 0.00 40.86 3.08
113 114 3.259123 TCTCGGTGGAGGTAAAAACCTAC 59.741 47.826 0.00 0.00 40.86 3.18
114 115 3.242011 TCGGTGGAGGTAAAAACCTACT 58.758 45.455 8.24 0.00 41.39 2.57
115 116 3.259123 TCGGTGGAGGTAAAAACCTACTC 59.741 47.826 8.24 4.53 41.39 2.59
116 117 3.618263 CGGTGGAGGTAAAAACCTACTCC 60.618 52.174 15.16 15.16 46.14 3.85
117 118 3.586174 GGTGGAGGTAAAAACCTACTCCT 59.414 47.826 17.10 0.00 46.12 3.69
118 119 4.779489 GGTGGAGGTAAAAACCTACTCCTA 59.221 45.833 17.10 0.00 46.12 2.94
119 120 5.337894 GGTGGAGGTAAAAACCTACTCCTAC 60.338 48.000 17.10 4.14 46.12 3.18
120 121 5.483231 GTGGAGGTAAAAACCTACTCCTACT 59.517 44.000 8.24 0.00 41.39 2.57
121 122 6.013898 GTGGAGGTAAAAACCTACTCCTACTT 60.014 42.308 8.24 0.00 41.39 2.24
122 123 6.013984 TGGAGGTAAAAACCTACTCCTACTTG 60.014 42.308 8.24 0.00 41.39 3.16
123 124 6.212187 GGAGGTAAAAACCTACTCCTACTTGA 59.788 42.308 0.00 0.00 40.86 3.02
124 125 7.092979 GGAGGTAAAAACCTACTCCTACTTGAT 60.093 40.741 0.00 0.00 40.86 2.57
125 126 8.215954 AGGTAAAAACCTACTCCTACTTGATT 57.784 34.615 0.00 0.00 38.58 2.57
126 127 9.330220 AGGTAAAAACCTACTCCTACTTGATTA 57.670 33.333 0.00 0.00 38.58 1.75
127 128 9.948964 GGTAAAAACCTACTCCTACTTGATTAA 57.051 33.333 0.00 0.00 0.00 1.40
154 155 7.914427 TTGATGATATGGGTAGTACAAGAGT 57.086 36.000 2.06 0.00 0.00 3.24
155 156 9.601810 ATTGATGATATGGGTAGTACAAGAGTA 57.398 33.333 2.06 0.00 0.00 2.59
156 157 8.637196 TGATGATATGGGTAGTACAAGAGTAG 57.363 38.462 2.06 0.00 0.00 2.57
157 158 8.445588 TGATGATATGGGTAGTACAAGAGTAGA 58.554 37.037 2.06 0.00 0.00 2.59
158 159 9.469097 GATGATATGGGTAGTACAAGAGTAGAT 57.531 37.037 2.06 0.00 0.00 1.98
159 160 8.865420 TGATATGGGTAGTACAAGAGTAGATC 57.135 38.462 2.06 0.00 0.00 2.75
160 161 8.670490 TGATATGGGTAGTACAAGAGTAGATCT 58.330 37.037 0.00 0.00 41.27 2.75
162 163 9.962809 ATATGGGTAGTACAAGAGTAGATCTAC 57.037 37.037 22.97 22.97 37.23 2.59
163 164 6.599445 TGGGTAGTACAAGAGTAGATCTACC 58.401 44.000 25.93 18.03 41.83 3.18
164 165 6.159222 TGGGTAGTACAAGAGTAGATCTACCA 59.841 42.308 25.93 11.57 43.02 3.25
165 166 6.486320 GGGTAGTACAAGAGTAGATCTACCAC 59.514 46.154 25.93 20.17 43.02 4.16
166 167 6.202570 GGTAGTACAAGAGTAGATCTACCACG 59.797 46.154 25.93 15.78 41.98 4.94
167 168 5.987098 AGTACAAGAGTAGATCTACCACGA 58.013 41.667 25.93 7.35 37.23 4.35
168 169 6.050432 AGTACAAGAGTAGATCTACCACGAG 58.950 44.000 25.93 18.86 37.23 4.18
169 170 4.846040 ACAAGAGTAGATCTACCACGAGT 58.154 43.478 25.93 19.35 37.23 4.18
170 171 5.254901 ACAAGAGTAGATCTACCACGAGTT 58.745 41.667 25.93 8.56 37.23 3.01
171 172 5.354792 ACAAGAGTAGATCTACCACGAGTTC 59.645 44.000 25.93 16.11 37.23 3.01
172 173 5.100344 AGAGTAGATCTACCACGAGTTCA 57.900 43.478 25.93 0.00 36.10 3.18
173 174 5.498393 AGAGTAGATCTACCACGAGTTCAA 58.502 41.667 25.93 0.00 36.10 2.69
174 175 5.944599 AGAGTAGATCTACCACGAGTTCAAA 59.055 40.000 25.93 0.00 36.10 2.69
175 176 6.094325 AGAGTAGATCTACCACGAGTTCAAAG 59.906 42.308 25.93 0.00 36.10 2.77
176 177 5.944599 AGTAGATCTACCACGAGTTCAAAGA 59.055 40.000 25.93 0.00 36.75 2.52
177 178 5.317733 AGATCTACCACGAGTTCAAAGAG 57.682 43.478 0.00 0.00 0.00 2.85
178 179 3.936372 TCTACCACGAGTTCAAAGAGG 57.064 47.619 0.00 0.00 0.00 3.69
179 180 2.029290 TCTACCACGAGTTCAAAGAGGC 60.029 50.000 0.00 0.00 0.00 4.70
180 181 0.759346 ACCACGAGTTCAAAGAGGCT 59.241 50.000 0.00 0.00 0.00 4.58
181 182 1.968493 ACCACGAGTTCAAAGAGGCTA 59.032 47.619 0.00 0.00 0.00 3.93
182 183 2.367567 ACCACGAGTTCAAAGAGGCTAA 59.632 45.455 0.00 0.00 0.00 3.09
183 184 3.181458 ACCACGAGTTCAAAGAGGCTAAA 60.181 43.478 0.00 0.00 0.00 1.85
184 185 3.186613 CCACGAGTTCAAAGAGGCTAAAC 59.813 47.826 0.00 0.00 0.00 2.01
185 186 3.186613 CACGAGTTCAAAGAGGCTAAACC 59.813 47.826 0.00 0.00 39.61 3.27
186 187 2.742589 CGAGTTCAAAGAGGCTAAACCC 59.257 50.000 0.00 0.00 40.58 4.11
187 188 3.557264 CGAGTTCAAAGAGGCTAAACCCT 60.557 47.826 0.00 0.00 40.58 4.34
188 189 4.322499 CGAGTTCAAAGAGGCTAAACCCTA 60.322 45.833 0.00 0.00 40.58 3.53
189 190 5.167303 AGTTCAAAGAGGCTAAACCCTAG 57.833 43.478 0.00 0.00 40.58 3.02
190 191 4.844655 AGTTCAAAGAGGCTAAACCCTAGA 59.155 41.667 0.00 0.00 40.58 2.43
191 192 5.309806 AGTTCAAAGAGGCTAAACCCTAGAA 59.690 40.000 0.00 0.00 40.58 2.10
192 193 5.422214 TCAAAGAGGCTAAACCCTAGAAG 57.578 43.478 0.00 0.00 40.58 2.85
193 194 3.916359 AAGAGGCTAAACCCTAGAAGC 57.084 47.619 0.00 0.00 40.58 3.86
194 195 3.123392 AGAGGCTAAACCCTAGAAGCT 57.877 47.619 0.00 0.00 40.58 3.74
195 196 4.267341 AGAGGCTAAACCCTAGAAGCTA 57.733 45.455 0.00 0.00 40.58 3.32
196 197 4.219919 AGAGGCTAAACCCTAGAAGCTAG 58.780 47.826 0.00 0.00 40.58 3.42
197 198 2.701423 AGGCTAAACCCTAGAAGCTAGC 59.299 50.000 6.62 6.62 40.58 3.42
198 199 2.224329 GGCTAAACCCTAGAAGCTAGCC 60.224 54.545 12.13 13.65 43.27 3.93
199 200 2.701423 GCTAAACCCTAGAAGCTAGCCT 59.299 50.000 12.13 4.79 32.18 4.58
200 201 3.896272 GCTAAACCCTAGAAGCTAGCCTA 59.104 47.826 12.13 5.82 32.18 3.93
201 202 4.528987 GCTAAACCCTAGAAGCTAGCCTAT 59.471 45.833 12.13 0.00 32.18 2.57
202 203 4.965200 AAACCCTAGAAGCTAGCCTATG 57.035 45.455 12.13 3.90 0.00 2.23
203 204 2.896039 ACCCTAGAAGCTAGCCTATGG 58.104 52.381 12.13 14.55 0.00 2.74
204 205 2.180308 ACCCTAGAAGCTAGCCTATGGT 59.820 50.000 12.13 15.16 31.76 3.55
205 206 3.401683 ACCCTAGAAGCTAGCCTATGGTA 59.598 47.826 19.36 2.73 33.87 3.25
206 207 4.046103 ACCCTAGAAGCTAGCCTATGGTAT 59.954 45.833 19.36 4.05 33.87 2.73
207 208 4.404073 CCCTAGAAGCTAGCCTATGGTATG 59.596 50.000 12.13 0.00 0.00 2.39
208 209 5.265191 CCTAGAAGCTAGCCTATGGTATGA 58.735 45.833 12.13 0.00 0.00 2.15
209 210 5.896678 CCTAGAAGCTAGCCTATGGTATGAT 59.103 44.000 12.13 0.00 0.00 2.45
210 211 6.382570 CCTAGAAGCTAGCCTATGGTATGATT 59.617 42.308 12.13 0.00 0.00 2.57
211 212 6.047511 AGAAGCTAGCCTATGGTATGATTG 57.952 41.667 12.13 0.00 0.00 2.67
212 213 5.545723 AGAAGCTAGCCTATGGTATGATTGT 59.454 40.000 12.13 0.00 0.00 2.71
213 214 5.832539 AGCTAGCCTATGGTATGATTGTT 57.167 39.130 12.13 0.00 0.00 2.83
214 215 5.555017 AGCTAGCCTATGGTATGATTGTTG 58.445 41.667 12.13 0.00 0.00 3.33
215 216 5.072329 AGCTAGCCTATGGTATGATTGTTGT 59.928 40.000 12.13 0.00 0.00 3.32
216 217 5.765182 GCTAGCCTATGGTATGATTGTTGTT 59.235 40.000 2.29 0.00 0.00 2.83
217 218 6.073003 GCTAGCCTATGGTATGATTGTTGTTC 60.073 42.308 2.29 0.00 0.00 3.18
218 219 4.816385 AGCCTATGGTATGATTGTTGTTCG 59.184 41.667 0.00 0.00 0.00 3.95
219 220 4.574828 GCCTATGGTATGATTGTTGTTCGT 59.425 41.667 0.00 0.00 0.00 3.85
220 221 5.277345 GCCTATGGTATGATTGTTGTTCGTC 60.277 44.000 0.00 0.00 0.00 4.20
221 222 5.236478 CCTATGGTATGATTGTTGTTCGTCC 59.764 44.000 0.00 0.00 0.00 4.79
222 223 4.280436 TGGTATGATTGTTGTTCGTCCT 57.720 40.909 0.00 0.00 0.00 3.85
223 224 5.408880 TGGTATGATTGTTGTTCGTCCTA 57.591 39.130 0.00 0.00 0.00 2.94
224 225 5.172934 TGGTATGATTGTTGTTCGTCCTAC 58.827 41.667 0.00 0.00 0.00 3.18
225 226 4.266976 GGTATGATTGTTGTTCGTCCTACG 59.733 45.833 0.00 0.00 44.19 3.51
226 227 2.679450 TGATTGTTGTTCGTCCTACGG 58.321 47.619 0.00 0.00 42.81 4.02
227 228 2.296752 TGATTGTTGTTCGTCCTACGGA 59.703 45.455 0.00 0.00 42.81 4.69
239 240 2.460669 TCCTACGGACTAAAACCCTCC 58.539 52.381 0.00 0.00 0.00 4.30
241 242 4.926207 CGGACTAAAACCCTCCGG 57.074 61.111 0.00 0.00 42.76 5.14
255 256 3.899980 ACCCTCCGGTTTATATAGACACC 59.100 47.826 0.00 2.59 40.58 4.16
261 262 5.044428 CGGTTTATATAGACACCGGAGAG 57.956 47.826 15.65 0.00 46.92 3.20
262 263 4.082895 CGGTTTATATAGACACCGGAGAGG 60.083 50.000 15.65 0.00 46.92 3.69
263 264 4.220163 GGTTTATATAGACACCGGAGAGGG 59.780 50.000 9.46 0.00 46.96 4.30
264 265 4.736611 TTATATAGACACCGGAGAGGGT 57.263 45.455 9.46 0.00 46.96 4.34
265 266 3.614568 ATATAGACACCGGAGAGGGTT 57.385 47.619 9.46 0.00 46.96 4.11
266 267 4.736611 ATATAGACACCGGAGAGGGTTA 57.263 45.455 9.46 0.00 46.96 2.85
267 268 2.431954 TAGACACCGGAGAGGGTTAG 57.568 55.000 9.46 0.00 46.96 2.34
268 269 0.324460 AGACACCGGAGAGGGTTAGG 60.324 60.000 9.46 0.00 46.96 2.69
269 270 1.305887 ACACCGGAGAGGGTTAGGG 60.306 63.158 9.46 0.00 46.96 3.53
270 271 1.305887 CACCGGAGAGGGTTAGGGT 60.306 63.158 9.46 0.00 46.96 4.34
271 272 0.908180 CACCGGAGAGGGTTAGGGTT 60.908 60.000 9.46 0.00 46.96 4.11
272 273 0.712380 ACCGGAGAGGGTTAGGGTTA 59.288 55.000 9.46 0.00 46.96 2.85
273 274 1.117994 CCGGAGAGGGTTAGGGTTAC 58.882 60.000 0.00 0.00 35.97 2.50
274 275 1.620524 CCGGAGAGGGTTAGGGTTACA 60.621 57.143 0.00 0.00 35.97 2.41
275 276 1.479730 CGGAGAGGGTTAGGGTTACAC 59.520 57.143 0.00 0.00 0.00 2.90
276 277 2.543635 GGAGAGGGTTAGGGTTACACA 58.456 52.381 0.00 0.00 0.00 3.72
277 278 2.500504 GGAGAGGGTTAGGGTTACACAG 59.499 54.545 0.00 0.00 0.00 3.66
278 279 3.438183 GAGAGGGTTAGGGTTACACAGA 58.562 50.000 0.00 0.00 0.00 3.41
279 280 3.442076 AGAGGGTTAGGGTTACACAGAG 58.558 50.000 0.00 0.00 0.00 3.35
280 281 3.171528 GAGGGTTAGGGTTACACAGAGT 58.828 50.000 0.00 0.00 0.00 3.24
281 282 3.171528 AGGGTTAGGGTTACACAGAGTC 58.828 50.000 0.00 0.00 0.00 3.36
282 283 2.094338 GGGTTAGGGTTACACAGAGTCG 60.094 54.545 0.00 0.00 0.00 4.18
283 284 2.094338 GGTTAGGGTTACACAGAGTCGG 60.094 54.545 0.00 0.00 0.00 4.79
284 285 2.560105 GTTAGGGTTACACAGAGTCGGT 59.440 50.000 0.00 0.00 0.00 4.69
285 286 1.713297 AGGGTTACACAGAGTCGGTT 58.287 50.000 0.00 0.00 0.00 4.44
286 287 2.880443 AGGGTTACACAGAGTCGGTTA 58.120 47.619 0.00 0.00 0.00 2.85
287 288 2.560105 AGGGTTACACAGAGTCGGTTAC 59.440 50.000 0.00 0.00 0.00 2.50
288 289 2.297033 GGGTTACACAGAGTCGGTTACA 59.703 50.000 0.00 0.00 0.00 2.41
289 290 3.243839 GGGTTACACAGAGTCGGTTACAA 60.244 47.826 0.00 0.00 0.00 2.41
290 291 4.562143 GGGTTACACAGAGTCGGTTACAAT 60.562 45.833 0.00 0.00 0.00 2.71
291 292 4.387862 GGTTACACAGAGTCGGTTACAATG 59.612 45.833 0.00 0.00 0.00 2.82
292 293 3.040147 ACACAGAGTCGGTTACAATGG 57.960 47.619 0.00 0.00 0.00 3.16
293 294 2.367567 ACACAGAGTCGGTTACAATGGT 59.632 45.455 0.00 0.00 0.00 3.55
294 295 3.575256 ACACAGAGTCGGTTACAATGGTA 59.425 43.478 0.00 0.00 0.00 3.25
295 296 4.174009 CACAGAGTCGGTTACAATGGTAG 58.826 47.826 0.00 0.00 0.00 3.18
296 297 3.194968 ACAGAGTCGGTTACAATGGTAGG 59.805 47.826 0.00 0.00 0.00 3.18
297 298 3.446161 CAGAGTCGGTTACAATGGTAGGA 59.554 47.826 0.00 0.00 0.00 2.94
298 299 3.700038 AGAGTCGGTTACAATGGTAGGAG 59.300 47.826 0.00 0.00 0.00 3.69
299 300 3.698040 GAGTCGGTTACAATGGTAGGAGA 59.302 47.826 0.00 0.00 0.00 3.71
300 301 4.287552 AGTCGGTTACAATGGTAGGAGAT 58.712 43.478 0.00 0.00 0.00 2.75
301 302 4.341520 AGTCGGTTACAATGGTAGGAGATC 59.658 45.833 0.00 0.00 0.00 2.75
302 303 4.341520 GTCGGTTACAATGGTAGGAGATCT 59.658 45.833 0.00 0.00 0.00 2.75
303 304 5.533903 GTCGGTTACAATGGTAGGAGATCTA 59.466 44.000 0.00 0.00 0.00 1.98
304 305 5.533903 TCGGTTACAATGGTAGGAGATCTAC 59.466 44.000 0.00 0.00 45.78 2.59
316 317 7.410800 GTAGGAGATCTACATATCCGTATCG 57.589 44.000 7.93 0.00 44.22 2.92
317 318 4.817464 AGGAGATCTACATATCCGTATCGC 59.183 45.833 7.93 0.00 44.22 4.58
318 319 4.023878 GGAGATCTACATATCCGTATCGCC 60.024 50.000 0.00 0.00 30.60 5.54
319 320 4.524053 AGATCTACATATCCGTATCGCCA 58.476 43.478 0.00 0.00 0.00 5.69
320 321 4.948004 AGATCTACATATCCGTATCGCCAA 59.052 41.667 0.00 0.00 0.00 4.52
321 322 4.696899 TCTACATATCCGTATCGCCAAG 57.303 45.455 0.00 0.00 0.00 3.61
322 323 2.080286 ACATATCCGTATCGCCAAGC 57.920 50.000 0.00 0.00 0.00 4.01
323 324 1.618837 ACATATCCGTATCGCCAAGCT 59.381 47.619 0.00 0.00 0.00 3.74
324 325 2.037251 ACATATCCGTATCGCCAAGCTT 59.963 45.455 0.00 0.00 0.00 3.74
325 326 2.148916 TATCCGTATCGCCAAGCTTG 57.851 50.000 19.93 19.93 0.00 4.01
326 327 1.160329 ATCCGTATCGCCAAGCTTGC 61.160 55.000 21.43 14.85 0.00 4.01
327 328 2.709475 CGTATCGCCAAGCTTGCC 59.291 61.111 21.43 9.45 0.00 4.52
328 329 1.815421 CGTATCGCCAAGCTTGCCT 60.815 57.895 21.43 7.17 0.00 4.75
329 330 1.369091 CGTATCGCCAAGCTTGCCTT 61.369 55.000 21.43 7.68 0.00 4.35
330 331 0.378610 GTATCGCCAAGCTTGCCTTC 59.621 55.000 21.43 8.32 0.00 3.46
331 332 0.748005 TATCGCCAAGCTTGCCTTCC 60.748 55.000 21.43 5.26 0.00 3.46
332 333 2.769652 ATCGCCAAGCTTGCCTTCCA 62.770 55.000 21.43 1.33 0.00 3.53
333 334 2.653115 GCCAAGCTTGCCTTCCAC 59.347 61.111 21.43 0.12 0.00 4.02
334 335 2.956987 CCAAGCTTGCCTTCCACG 59.043 61.111 21.43 0.62 0.00 4.94
335 336 2.256461 CAAGCTTGCCTTCCACGC 59.744 61.111 14.65 0.00 38.87 5.34
336 337 2.985847 AAGCTTGCCTTCCACGCC 60.986 61.111 0.00 0.00 39.36 5.68
337 338 3.790416 AAGCTTGCCTTCCACGCCA 62.790 57.895 0.00 0.00 39.36 5.69
338 339 3.294493 GCTTGCCTTCCACGCCAA 61.294 61.111 0.00 0.00 32.93 4.52
339 340 2.956987 CTTGCCTTCCACGCCAAG 59.043 61.111 0.00 0.00 0.00 3.61
340 341 2.597217 TTGCCTTCCACGCCAAGG 60.597 61.111 3.73 3.73 43.13 3.61
341 342 3.126703 TTGCCTTCCACGCCAAGGA 62.127 57.895 10.97 0.00 42.94 3.36
342 343 2.282180 GCCTTCCACGCCAAGGAA 60.282 61.111 10.97 5.63 42.94 3.36
343 344 1.901464 GCCTTCCACGCCAAGGAAA 60.901 57.895 10.97 0.00 44.07 3.13
344 345 1.866853 GCCTTCCACGCCAAGGAAAG 61.867 60.000 10.97 2.24 44.07 2.62
345 346 0.537371 CCTTCCACGCCAAGGAAAGT 60.537 55.000 2.12 0.00 44.07 2.66
346 347 0.875059 CTTCCACGCCAAGGAAAGTC 59.125 55.000 0.00 0.00 44.07 3.01
347 348 0.536460 TTCCACGCCAAGGAAAGTCC 60.536 55.000 0.00 0.00 41.94 3.85
348 349 1.971695 CCACGCCAAGGAAAGTCCC 60.972 63.158 0.00 0.00 37.19 4.46
349 350 1.228124 CACGCCAAGGAAAGTCCCA 60.228 57.895 0.00 0.00 37.19 4.37
350 351 0.609131 CACGCCAAGGAAAGTCCCAT 60.609 55.000 0.00 0.00 37.19 4.00
351 352 0.322546 ACGCCAAGGAAAGTCCCATC 60.323 55.000 0.00 0.00 37.19 3.51
352 353 0.035056 CGCCAAGGAAAGTCCCATCT 60.035 55.000 0.00 0.00 37.19 2.90
353 354 1.467920 GCCAAGGAAAGTCCCATCTG 58.532 55.000 0.00 0.00 37.19 2.90
354 355 1.957113 GCCAAGGAAAGTCCCATCTGG 60.957 57.143 0.00 0.00 37.19 3.86
355 356 1.635487 CCAAGGAAAGTCCCATCTGGA 59.365 52.381 0.00 0.00 42.41 3.86
364 365 1.114627 TCCCATCTGGACATGAGACG 58.885 55.000 0.00 0.00 38.61 4.18
365 366 1.114627 CCCATCTGGACATGAGACGA 58.885 55.000 0.00 0.00 37.39 4.20
366 367 1.482182 CCCATCTGGACATGAGACGAA 59.518 52.381 0.00 0.00 37.39 3.85
367 368 2.482664 CCCATCTGGACATGAGACGAAG 60.483 54.545 0.00 0.00 37.39 3.79
368 369 2.167281 CCATCTGGACATGAGACGAAGT 59.833 50.000 0.00 0.00 40.85 3.01
386 387 7.820044 ACGAAGTCTTCAATCTTGTATCTTC 57.180 36.000 12.99 0.00 29.74 2.87
387 388 7.378966 ACGAAGTCTTCAATCTTGTATCTTCA 58.621 34.615 12.99 0.00 29.74 3.02
388 389 8.037758 ACGAAGTCTTCAATCTTGTATCTTCAT 58.962 33.333 12.99 0.00 29.74 2.57
389 390 9.521503 CGAAGTCTTCAATCTTGTATCTTCATA 57.478 33.333 12.99 0.00 32.10 2.15
397 398 9.421399 TCAATCTTGTATCTTCATAGTACAGGA 57.579 33.333 0.00 0.00 38.33 3.86
398 399 9.689976 CAATCTTGTATCTTCATAGTACAGGAG 57.310 37.037 0.00 0.00 37.69 3.69
399 400 9.427821 AATCTTGTATCTTCATAGTACAGGAGT 57.572 33.333 0.00 0.00 37.69 3.85
400 401 8.453238 TCTTGTATCTTCATAGTACAGGAGTC 57.547 38.462 0.00 0.00 31.95 3.36
401 402 7.502895 TCTTGTATCTTCATAGTACAGGAGTCC 59.497 40.741 0.00 0.00 31.95 3.85
402 403 5.763698 TGTATCTTCATAGTACAGGAGTCCG 59.236 44.000 2.76 1.29 0.00 4.79
403 404 3.552875 TCTTCATAGTACAGGAGTCCGG 58.447 50.000 7.88 7.88 0.00 5.14
404 405 1.688772 TCATAGTACAGGAGTCCGGC 58.311 55.000 9.48 0.00 0.00 6.13
405 406 0.674534 CATAGTACAGGAGTCCGGCC 59.325 60.000 9.48 0.00 0.00 6.13
406 407 0.822532 ATAGTACAGGAGTCCGGCCG 60.823 60.000 21.04 21.04 0.00 6.13
407 408 1.913951 TAGTACAGGAGTCCGGCCGA 61.914 60.000 30.73 10.38 0.00 5.54
408 409 2.036098 TACAGGAGTCCGGCCGAA 59.964 61.111 30.73 1.10 0.00 4.30
409 410 2.050350 TACAGGAGTCCGGCCGAAG 61.050 63.158 30.73 11.63 0.00 3.79
410 411 2.488771 TACAGGAGTCCGGCCGAAGA 62.489 60.000 30.73 14.33 0.00 2.87
411 412 2.042843 AGGAGTCCGGCCGAAGAT 60.043 61.111 30.73 9.58 0.00 2.40
412 413 2.107141 GGAGTCCGGCCGAAGATG 59.893 66.667 30.73 9.82 0.00 2.90
413 414 2.423898 GGAGTCCGGCCGAAGATGA 61.424 63.158 30.73 12.55 0.00 2.92
414 415 1.742768 GAGTCCGGCCGAAGATGAT 59.257 57.895 30.73 6.58 0.00 2.45
415 416 0.959553 GAGTCCGGCCGAAGATGATA 59.040 55.000 30.73 0.00 0.00 2.15
416 417 0.962489 AGTCCGGCCGAAGATGATAG 59.038 55.000 30.73 6.27 0.00 2.08
417 418 0.674534 GTCCGGCCGAAGATGATAGT 59.325 55.000 30.73 0.00 0.00 2.12
418 419 1.068741 GTCCGGCCGAAGATGATAGTT 59.931 52.381 30.73 0.00 0.00 2.24
419 420 1.340248 TCCGGCCGAAGATGATAGTTC 59.660 52.381 30.73 0.00 0.00 3.01
420 421 1.409412 CGGCCGAAGATGATAGTTCG 58.591 55.000 24.07 3.18 44.12 3.95
437 438 3.557290 GGCTATCCGGACACCCCC 61.557 72.222 6.12 0.00 0.00 5.40
438 439 2.446036 GCTATCCGGACACCCCCT 60.446 66.667 6.12 0.00 0.00 4.79
439 440 1.152398 GCTATCCGGACACCCCCTA 60.152 63.158 6.12 0.00 0.00 3.53
440 441 1.186267 GCTATCCGGACACCCCCTAG 61.186 65.000 6.12 3.64 0.00 3.02
441 442 0.187851 CTATCCGGACACCCCCTAGT 59.812 60.000 6.12 0.00 0.00 2.57
442 443 0.186873 TATCCGGACACCCCCTAGTC 59.813 60.000 6.12 0.00 0.00 2.59
445 446 2.762875 GGACACCCCCTAGTCCGG 60.763 72.222 0.00 0.00 44.23 5.14
446 447 2.361771 GACACCCCCTAGTCCGGA 59.638 66.667 0.00 0.00 0.00 5.14
447 448 1.305549 GACACCCCCTAGTCCGGAA 60.306 63.158 5.23 0.00 0.00 4.30
448 449 1.611474 GACACCCCCTAGTCCGGAAC 61.611 65.000 5.23 0.00 0.00 3.62
449 450 1.305887 CACCCCCTAGTCCGGAACT 60.306 63.158 5.23 8.86 42.33 3.01
450 451 1.001376 ACCCCCTAGTCCGGAACTC 59.999 63.158 5.23 0.00 39.55 3.01
451 452 1.761271 CCCCCTAGTCCGGAACTCC 60.761 68.421 5.23 0.00 39.55 3.85
452 453 1.001248 CCCCTAGTCCGGAACTCCA 59.999 63.158 5.23 0.00 39.55 3.86
453 454 0.398664 CCCCTAGTCCGGAACTCCAT 60.399 60.000 5.23 0.00 39.55 3.41
640 641 4.148128 TGTTGGTTTTGGAATGCACATT 57.852 36.364 0.00 0.00 0.00 2.71
651 652 3.129287 GGAATGCACATTCGTTGGAAGAT 59.871 43.478 15.26 0.00 46.11 2.40
738 739 5.068987 ACAAGGCTCTTGAGTTATTTGCAAA 59.931 36.000 15.44 15.44 0.00 3.68
750 751 6.515832 AGTTATTTGCAAAGAAGAAGGTTGG 58.484 36.000 18.98 0.00 0.00 3.77
776 777 3.299503 AGGTTGCATTTGGACTTGAACT 58.700 40.909 0.00 0.00 0.00 3.01
871 873 2.624838 CAAGAAGTGAGGCCAACATTGT 59.375 45.455 5.01 0.00 0.00 2.71
975 977 3.831323 TGACAACAATGTGGGTGATCTT 58.169 40.909 0.00 0.00 40.74 2.40
983 985 5.165676 CAATGTGGGTGATCTTGACAAATG 58.834 41.667 0.00 0.00 0.00 2.32
1007 1009 1.522668 TTGCAAGAGACAATGGACCG 58.477 50.000 0.00 0.00 0.00 4.79
1196 1199 1.140052 CGTGGTAGATGGTGGCCAATA 59.860 52.381 7.24 0.00 36.95 1.90
1253 1256 3.874383 TTTGGGAGATGACAAGAACCA 57.126 42.857 0.00 0.00 0.00 3.67
1276 1279 5.241506 CAGATTGCAAAAGGGTCTAAGTTCA 59.758 40.000 1.71 0.00 0.00 3.18
1302 1305 7.528996 AACATTCTTGGAATTGAAGATGTGA 57.471 32.000 12.26 0.00 29.45 3.58
1306 1309 5.868454 TCTTGGAATTGAAGATGTGACTCA 58.132 37.500 0.00 0.00 0.00 3.41
1404 1407 6.139048 TGTGCATGTGAAGATGAAATATGG 57.861 37.500 0.00 0.00 0.00 2.74
1416 1419 6.604171 AGATGAAATATGGCTGTGGATTGTA 58.396 36.000 0.00 0.00 0.00 2.41
1458 1461 0.604578 GTCCCACTTGGCACGTAGTA 59.395 55.000 0.00 0.00 41.61 1.82
1538 1541 3.926821 AAACCACAAACAACTCACGTT 57.073 38.095 0.00 0.00 0.00 3.99
1588 1591 5.003804 ACTCAATATCCACACTTCCAACAC 58.996 41.667 0.00 0.00 0.00 3.32
1596 1599 3.402110 CACACTTCCAACACTGAGCATA 58.598 45.455 0.00 0.00 0.00 3.14
1776 1779 1.250154 CGGGCATGGTTCATGTGGTT 61.250 55.000 9.28 0.00 43.10 3.67
1816 1819 1.812571 CAACGGTTCATGAAGGAAGGG 59.187 52.381 8.80 0.00 0.00 3.95
2033 2038 4.237976 TGACAACTGGGAGTGGTTTTTA 57.762 40.909 0.00 0.00 31.13 1.52
2125 2130 1.006832 CTTAACGCGGTGGAGATTGG 58.993 55.000 7.07 0.00 0.00 3.16
2130 2135 1.656818 CGCGGTGGAGATTGGCATTT 61.657 55.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.210711 CCCCCTACCTGAGATCCGC 61.211 68.421 0.00 0.00 0.00 5.54
1 2 0.828343 GACCCCCTACCTGAGATCCG 60.828 65.000 0.00 0.00 0.00 4.18
2 3 0.472161 GGACCCCCTACCTGAGATCC 60.472 65.000 0.00 0.00 0.00 3.36
3 4 0.472161 GGGACCCCCTACCTGAGATC 60.472 65.000 0.00 0.00 41.34 2.75
4 5 1.632740 GGGACCCCCTACCTGAGAT 59.367 63.158 0.00 0.00 41.34 2.75
5 6 3.005148 CGGGACCCCCTACCTGAGA 62.005 68.421 4.46 0.00 42.67 3.27
6 7 2.444140 CGGGACCCCCTACCTGAG 60.444 72.222 4.46 0.00 42.67 3.35
7 8 2.560083 TTCGGGACCCCCTACCTGA 61.560 63.158 4.46 0.00 42.67 3.86
8 9 2.039951 TTCGGGACCCCCTACCTG 59.960 66.667 4.46 0.00 42.67 4.00
9 10 2.040114 GTTCGGGACCCCCTACCT 59.960 66.667 4.46 0.00 42.67 3.08
10 11 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
11 12 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
12 13 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
13 14 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
14 15 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
15 16 3.268103 ATGCACAGTTCGGGACCCC 62.268 63.158 4.46 0.00 0.00 4.95
16 17 1.745489 GATGCACAGTTCGGGACCC 60.745 63.158 0.00 0.00 0.00 4.46
17 18 0.535335 TAGATGCACAGTTCGGGACC 59.465 55.000 0.00 0.00 0.00 4.46
18 19 1.471676 CCTAGATGCACAGTTCGGGAC 60.472 57.143 0.00 0.00 0.00 4.46
19 20 0.824109 CCTAGATGCACAGTTCGGGA 59.176 55.000 0.00 0.00 0.00 5.14
20 21 0.811616 GCCTAGATGCACAGTTCGGG 60.812 60.000 0.00 0.00 0.00 5.14
21 22 1.148157 CGCCTAGATGCACAGTTCGG 61.148 60.000 0.00 0.00 0.00 4.30
22 23 1.148157 CCGCCTAGATGCACAGTTCG 61.148 60.000 0.00 0.00 0.00 3.95
23 24 0.175760 TCCGCCTAGATGCACAGTTC 59.824 55.000 0.00 0.00 0.00 3.01
24 25 0.613260 TTCCGCCTAGATGCACAGTT 59.387 50.000 0.00 0.00 0.00 3.16
25 26 0.176680 CTTCCGCCTAGATGCACAGT 59.823 55.000 0.00 0.00 0.00 3.55
26 27 0.531532 CCTTCCGCCTAGATGCACAG 60.532 60.000 0.00 0.00 0.00 3.66
27 28 1.264749 ACCTTCCGCCTAGATGCACA 61.265 55.000 0.00 0.00 0.00 4.57
28 29 0.750850 TACCTTCCGCCTAGATGCAC 59.249 55.000 0.00 0.00 0.00 4.57
29 30 1.138266 GTTACCTTCCGCCTAGATGCA 59.862 52.381 0.00 0.00 0.00 3.96
30 31 1.138266 TGTTACCTTCCGCCTAGATGC 59.862 52.381 0.00 0.00 0.00 3.91
31 32 2.224066 CCTGTTACCTTCCGCCTAGATG 60.224 54.545 0.00 0.00 0.00 2.90
32 33 2.040178 CCTGTTACCTTCCGCCTAGAT 58.960 52.381 0.00 0.00 0.00 1.98
33 34 1.006281 TCCTGTTACCTTCCGCCTAGA 59.994 52.381 0.00 0.00 0.00 2.43
34 35 1.409427 CTCCTGTTACCTTCCGCCTAG 59.591 57.143 0.00 0.00 0.00 3.02
35 36 1.006281 TCTCCTGTTACCTTCCGCCTA 59.994 52.381 0.00 0.00 0.00 3.93
36 37 0.252103 TCTCCTGTTACCTTCCGCCT 60.252 55.000 0.00 0.00 0.00 5.52
37 38 0.108281 GTCTCCTGTTACCTTCCGCC 60.108 60.000 0.00 0.00 0.00 6.13
38 39 0.606604 TGTCTCCTGTTACCTTCCGC 59.393 55.000 0.00 0.00 0.00 5.54
39 40 2.353803 CCTTGTCTCCTGTTACCTTCCG 60.354 54.545 0.00 0.00 0.00 4.30
40 41 2.027100 CCCTTGTCTCCTGTTACCTTCC 60.027 54.545 0.00 0.00 0.00 3.46
41 42 2.904434 TCCCTTGTCTCCTGTTACCTTC 59.096 50.000 0.00 0.00 0.00 3.46
42 43 2.638363 GTCCCTTGTCTCCTGTTACCTT 59.362 50.000 0.00 0.00 0.00 3.50
43 44 2.258109 GTCCCTTGTCTCCTGTTACCT 58.742 52.381 0.00 0.00 0.00 3.08
44 45 1.975680 TGTCCCTTGTCTCCTGTTACC 59.024 52.381 0.00 0.00 0.00 2.85
45 46 2.609737 CGTGTCCCTTGTCTCCTGTTAC 60.610 54.545 0.00 0.00 0.00 2.50
46 47 1.616865 CGTGTCCCTTGTCTCCTGTTA 59.383 52.381 0.00 0.00 0.00 2.41
47 48 0.393077 CGTGTCCCTTGTCTCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
48 49 0.469331 TCGTGTCCCTTGTCTCCTGT 60.469 55.000 0.00 0.00 0.00 4.00
49 50 0.898320 ATCGTGTCCCTTGTCTCCTG 59.102 55.000 0.00 0.00 0.00 3.86
50 51 0.898320 CATCGTGTCCCTTGTCTCCT 59.102 55.000 0.00 0.00 0.00 3.69
51 52 0.608640 ACATCGTGTCCCTTGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
52 53 2.457366 AACATCGTGTCCCTTGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
53 54 2.930826 AAACATCGTGTCCCTTGTCT 57.069 45.000 0.00 0.00 0.00 3.41
54 55 3.982576 AAAAACATCGTGTCCCTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
55 56 3.566742 GGTAAAAACATCGTGTCCCTTGT 59.433 43.478 0.00 0.00 0.00 3.16
56 57 3.057806 GGGTAAAAACATCGTGTCCCTTG 60.058 47.826 0.00 0.00 29.50 3.61
57 58 3.151554 GGGTAAAAACATCGTGTCCCTT 58.848 45.455 0.00 0.00 29.50 3.95
58 59 2.106857 TGGGTAAAAACATCGTGTCCCT 59.893 45.455 10.79 0.00 32.37 4.20
59 60 2.486592 CTGGGTAAAAACATCGTGTCCC 59.513 50.000 0.00 0.00 31.92 4.46
60 61 2.486592 CCTGGGTAAAAACATCGTGTCC 59.513 50.000 0.00 0.00 0.00 4.02
61 62 3.143728 ACCTGGGTAAAAACATCGTGTC 58.856 45.455 0.00 0.00 0.00 3.67
62 63 3.217681 ACCTGGGTAAAAACATCGTGT 57.782 42.857 0.00 0.00 0.00 4.49
63 64 3.364565 CGAACCTGGGTAAAAACATCGTG 60.365 47.826 0.00 0.00 0.00 4.35
64 65 2.809696 CGAACCTGGGTAAAAACATCGT 59.190 45.455 0.00 0.00 0.00 3.73
65 66 2.160813 CCGAACCTGGGTAAAAACATCG 59.839 50.000 0.00 0.00 0.00 3.84
66 67 2.490509 CCCGAACCTGGGTAAAAACATC 59.509 50.000 0.00 0.00 44.76 3.06
67 68 2.521126 CCCGAACCTGGGTAAAAACAT 58.479 47.619 0.00 0.00 44.76 2.71
68 69 1.984066 CCCGAACCTGGGTAAAAACA 58.016 50.000 0.00 0.00 44.76 2.83
77 78 3.787001 GAGAGGGCCCGAACCTGG 61.787 72.222 18.44 0.00 38.79 4.45
78 79 4.148825 CGAGAGGGCCCGAACCTG 62.149 72.222 18.44 1.23 38.79 4.00
90 91 2.302157 AGGTTTTTACCTCCACCGAGAG 59.698 50.000 0.00 0.00 38.52 3.20
91 92 2.332117 AGGTTTTTACCTCCACCGAGA 58.668 47.619 0.00 0.00 38.52 4.04
92 93 2.853235 AGGTTTTTACCTCCACCGAG 57.147 50.000 0.00 0.00 34.41 4.63
93 94 3.242011 AGTAGGTTTTTACCTCCACCGA 58.758 45.455 0.00 0.00 41.12 4.69
94 95 3.593096 GAGTAGGTTTTTACCTCCACCG 58.407 50.000 0.00 0.00 41.12 4.94
95 96 3.586174 AGGAGTAGGTTTTTACCTCCACC 59.414 47.826 0.00 0.00 41.12 4.61
96 97 4.904895 AGGAGTAGGTTTTTACCTCCAC 57.095 45.455 0.00 0.00 41.12 4.02
97 98 5.658474 AGTAGGAGTAGGTTTTTACCTCCA 58.342 41.667 0.00 0.00 41.12 3.86
98 99 6.212187 TCAAGTAGGAGTAGGTTTTTACCTCC 59.788 42.308 0.00 0.00 41.12 4.30
99 100 7.237209 TCAAGTAGGAGTAGGTTTTTACCTC 57.763 40.000 0.00 0.00 41.12 3.85
100 101 7.809880 ATCAAGTAGGAGTAGGTTTTTACCT 57.190 36.000 2.01 2.01 43.62 3.08
101 102 9.948964 TTAATCAAGTAGGAGTAGGTTTTTACC 57.051 33.333 0.00 0.00 0.00 2.85
128 129 9.601810 ACTCTTGTACTACCCATATCATCAATA 57.398 33.333 0.00 0.00 0.00 1.90
129 130 8.497910 ACTCTTGTACTACCCATATCATCAAT 57.502 34.615 0.00 0.00 0.00 2.57
130 131 7.914427 ACTCTTGTACTACCCATATCATCAA 57.086 36.000 0.00 0.00 0.00 2.57
131 132 8.445588 TCTACTCTTGTACTACCCATATCATCA 58.554 37.037 0.00 0.00 0.00 3.07
132 133 8.865420 TCTACTCTTGTACTACCCATATCATC 57.135 38.462 0.00 0.00 0.00 2.92
133 134 9.469097 GATCTACTCTTGTACTACCCATATCAT 57.531 37.037 0.00 0.00 0.00 2.45
134 135 8.670490 AGATCTACTCTTGTACTACCCATATCA 58.330 37.037 0.00 0.00 0.00 2.15
136 137 9.962809 GTAGATCTACTCTTGTACTACCCATAT 57.037 37.037 23.12 0.00 35.28 1.78
137 138 8.381636 GGTAGATCTACTCTTGTACTACCCATA 58.618 40.741 27.68 0.00 38.57 2.74
138 139 7.147177 TGGTAGATCTACTCTTGTACTACCCAT 60.147 40.741 27.68 0.00 40.97 4.00
139 140 6.159222 TGGTAGATCTACTCTTGTACTACCCA 59.841 42.308 27.68 12.88 40.97 4.51
140 141 6.486320 GTGGTAGATCTACTCTTGTACTACCC 59.514 46.154 27.68 10.66 40.97 3.69
141 142 6.202570 CGTGGTAGATCTACTCTTGTACTACC 59.797 46.154 27.68 13.13 41.46 3.18
142 143 6.983307 TCGTGGTAGATCTACTCTTGTACTAC 59.017 42.308 27.68 12.31 36.36 2.73
143 144 7.117285 TCGTGGTAGATCTACTCTTGTACTA 57.883 40.000 27.68 10.32 36.36 1.82
144 145 5.987098 TCGTGGTAGATCTACTCTTGTACT 58.013 41.667 27.68 0.00 36.36 2.73
145 146 5.816777 ACTCGTGGTAGATCTACTCTTGTAC 59.183 44.000 27.68 16.82 36.36 2.90
146 147 5.987098 ACTCGTGGTAGATCTACTCTTGTA 58.013 41.667 27.68 11.31 36.36 2.41
147 148 4.846040 ACTCGTGGTAGATCTACTCTTGT 58.154 43.478 27.68 18.12 36.36 3.16
148 149 5.354513 TGAACTCGTGGTAGATCTACTCTTG 59.645 44.000 27.68 16.93 36.36 3.02
149 150 5.498393 TGAACTCGTGGTAGATCTACTCTT 58.502 41.667 27.68 13.85 36.36 2.85
150 151 5.100344 TGAACTCGTGGTAGATCTACTCT 57.900 43.478 27.68 9.36 36.36 3.24
151 152 5.814764 TTGAACTCGTGGTAGATCTACTC 57.185 43.478 27.68 19.35 36.36 2.59
152 153 5.944599 TCTTTGAACTCGTGGTAGATCTACT 59.055 40.000 27.68 10.07 36.36 2.57
153 154 6.192234 TCTTTGAACTCGTGGTAGATCTAC 57.808 41.667 22.47 22.47 35.40 2.59
154 155 5.357314 CCTCTTTGAACTCGTGGTAGATCTA 59.643 44.000 0.00 0.00 0.00 1.98
155 156 4.158764 CCTCTTTGAACTCGTGGTAGATCT 59.841 45.833 0.00 0.00 0.00 2.75
156 157 4.425520 CCTCTTTGAACTCGTGGTAGATC 58.574 47.826 0.00 0.00 0.00 2.75
157 158 3.368531 GCCTCTTTGAACTCGTGGTAGAT 60.369 47.826 0.00 0.00 0.00 1.98
158 159 2.029290 GCCTCTTTGAACTCGTGGTAGA 60.029 50.000 0.00 0.00 0.00 2.59
159 160 2.028930 AGCCTCTTTGAACTCGTGGTAG 60.029 50.000 0.00 0.00 0.00 3.18
160 161 1.968493 AGCCTCTTTGAACTCGTGGTA 59.032 47.619 0.00 0.00 0.00 3.25
161 162 0.759346 AGCCTCTTTGAACTCGTGGT 59.241 50.000 0.00 0.00 0.00 4.16
162 163 2.743636 TAGCCTCTTTGAACTCGTGG 57.256 50.000 0.00 0.00 0.00 4.94
163 164 3.186613 GGTTTAGCCTCTTTGAACTCGTG 59.813 47.826 0.00 0.00 0.00 4.35
164 165 3.400255 GGTTTAGCCTCTTTGAACTCGT 58.600 45.455 0.00 0.00 0.00 4.18
165 166 2.742589 GGGTTTAGCCTCTTTGAACTCG 59.257 50.000 0.00 0.00 37.43 4.18
166 167 4.022413 AGGGTTTAGCCTCTTTGAACTC 57.978 45.455 0.00 0.00 37.43 3.01
167 168 4.844655 TCTAGGGTTTAGCCTCTTTGAACT 59.155 41.667 3.32 0.00 37.43 3.01
168 169 5.161943 TCTAGGGTTTAGCCTCTTTGAAC 57.838 43.478 3.32 0.00 37.43 3.18
169 170 5.803470 GCTTCTAGGGTTTAGCCTCTTTGAA 60.803 44.000 3.32 5.03 37.43 2.69
170 171 4.323562 GCTTCTAGGGTTTAGCCTCTTTGA 60.324 45.833 3.32 0.00 37.43 2.69
171 172 3.942115 GCTTCTAGGGTTTAGCCTCTTTG 59.058 47.826 3.32 0.00 37.43 2.77
172 173 3.847184 AGCTTCTAGGGTTTAGCCTCTTT 59.153 43.478 3.32 0.00 37.43 2.52
173 174 3.455849 AGCTTCTAGGGTTTAGCCTCTT 58.544 45.455 3.32 0.00 37.43 2.85
174 175 3.123392 AGCTTCTAGGGTTTAGCCTCT 57.877 47.619 3.32 0.00 37.43 3.69
175 176 3.243941 GCTAGCTTCTAGGGTTTAGCCTC 60.244 52.174 7.70 0.00 37.43 4.70
176 177 2.701423 GCTAGCTTCTAGGGTTTAGCCT 59.299 50.000 7.70 5.72 37.43 4.58
177 178 2.224329 GGCTAGCTTCTAGGGTTTAGCC 60.224 54.545 15.72 15.56 44.26 3.93
178 179 2.701423 AGGCTAGCTTCTAGGGTTTAGC 59.299 50.000 15.72 0.00 34.32 3.09
179 180 5.046950 CCATAGGCTAGCTTCTAGGGTTTAG 60.047 48.000 18.28 0.00 34.00 1.85
180 181 4.838986 CCATAGGCTAGCTTCTAGGGTTTA 59.161 45.833 18.28 0.00 34.00 2.01
181 182 3.648545 CCATAGGCTAGCTTCTAGGGTTT 59.351 47.826 18.28 0.00 34.00 3.27
182 183 3.243724 CCATAGGCTAGCTTCTAGGGTT 58.756 50.000 18.28 0.00 34.00 4.11
183 184 2.180308 ACCATAGGCTAGCTTCTAGGGT 59.820 50.000 23.48 23.48 43.27 4.34
184 185 2.896039 ACCATAGGCTAGCTTCTAGGG 58.104 52.381 22.47 22.47 41.57 3.53
185 186 5.265191 TCATACCATAGGCTAGCTTCTAGG 58.735 45.833 15.72 12.08 0.00 3.02
186 187 7.093552 ACAATCATACCATAGGCTAGCTTCTAG 60.094 40.741 15.72 3.93 0.00 2.43
187 188 6.726299 ACAATCATACCATAGGCTAGCTTCTA 59.274 38.462 15.72 8.91 0.00 2.10
188 189 5.545723 ACAATCATACCATAGGCTAGCTTCT 59.454 40.000 15.72 6.71 0.00 2.85
189 190 5.799213 ACAATCATACCATAGGCTAGCTTC 58.201 41.667 15.72 0.00 0.00 3.86
190 191 5.832539 ACAATCATACCATAGGCTAGCTT 57.167 39.130 15.72 10.11 0.00 3.74
191 192 5.072329 ACAACAATCATACCATAGGCTAGCT 59.928 40.000 15.72 3.22 0.00 3.32
192 193 5.308825 ACAACAATCATACCATAGGCTAGC 58.691 41.667 6.04 6.04 0.00 3.42
193 194 6.146184 CGAACAACAATCATACCATAGGCTAG 59.854 42.308 0.00 0.00 0.00 3.42
194 195 5.989168 CGAACAACAATCATACCATAGGCTA 59.011 40.000 0.00 0.00 0.00 3.93
195 196 4.816385 CGAACAACAATCATACCATAGGCT 59.184 41.667 0.00 0.00 0.00 4.58
196 197 4.574828 ACGAACAACAATCATACCATAGGC 59.425 41.667 0.00 0.00 0.00 3.93
197 198 5.236478 GGACGAACAACAATCATACCATAGG 59.764 44.000 0.00 0.00 0.00 2.57
198 199 6.049149 AGGACGAACAACAATCATACCATAG 58.951 40.000 0.00 0.00 0.00 2.23
199 200 5.984725 AGGACGAACAACAATCATACCATA 58.015 37.500 0.00 0.00 0.00 2.74
200 201 4.843728 AGGACGAACAACAATCATACCAT 58.156 39.130 0.00 0.00 0.00 3.55
201 202 4.280436 AGGACGAACAACAATCATACCA 57.720 40.909 0.00 0.00 0.00 3.25
202 203 4.266976 CGTAGGACGAACAACAATCATACC 59.733 45.833 0.00 0.00 46.05 2.73
203 204 5.371344 CGTAGGACGAACAACAATCATAC 57.629 43.478 0.00 0.00 46.05 2.39
221 222 2.573941 CGGAGGGTTTTAGTCCGTAG 57.426 55.000 1.80 0.00 46.66 3.51
240 241 4.220163 CCCTCTCCGGTGTCTATATAAACC 59.780 50.000 0.00 0.68 0.00 3.27
241 242 4.831710 ACCCTCTCCGGTGTCTATATAAAC 59.168 45.833 0.00 0.00 33.77 2.01
242 243 5.070823 ACCCTCTCCGGTGTCTATATAAA 57.929 43.478 0.00 0.00 33.77 1.40
243 244 4.736611 ACCCTCTCCGGTGTCTATATAA 57.263 45.455 0.00 0.00 33.77 0.98
244 245 4.736611 AACCCTCTCCGGTGTCTATATA 57.263 45.455 0.00 0.00 35.83 0.86
245 246 3.614568 AACCCTCTCCGGTGTCTATAT 57.385 47.619 0.00 0.00 35.83 0.86
246 247 3.181436 CCTAACCCTCTCCGGTGTCTATA 60.181 52.174 0.00 0.00 35.83 1.31
247 248 2.424523 CCTAACCCTCTCCGGTGTCTAT 60.425 54.545 0.00 0.00 35.83 1.98
248 249 1.064166 CCTAACCCTCTCCGGTGTCTA 60.064 57.143 0.00 0.00 35.83 2.59
249 250 0.324460 CCTAACCCTCTCCGGTGTCT 60.324 60.000 0.00 0.00 35.83 3.41
250 251 1.328430 CCCTAACCCTCTCCGGTGTC 61.328 65.000 0.00 0.00 35.83 3.67
251 252 1.305887 CCCTAACCCTCTCCGGTGT 60.306 63.158 0.00 0.00 35.83 4.16
252 253 0.908180 AACCCTAACCCTCTCCGGTG 60.908 60.000 0.00 0.00 35.83 4.94
253 254 0.712380 TAACCCTAACCCTCTCCGGT 59.288 55.000 0.00 0.00 37.93 5.28
254 255 1.117994 GTAACCCTAACCCTCTCCGG 58.882 60.000 0.00 0.00 0.00 5.14
255 256 1.479730 GTGTAACCCTAACCCTCTCCG 59.520 57.143 0.00 0.00 0.00 4.63
256 257 2.500504 CTGTGTAACCCTAACCCTCTCC 59.499 54.545 0.00 0.00 34.36 3.71
257 258 3.438183 TCTGTGTAACCCTAACCCTCTC 58.562 50.000 0.00 0.00 34.36 3.20
258 259 3.181409 ACTCTGTGTAACCCTAACCCTCT 60.181 47.826 0.00 0.00 34.36 3.69
259 260 3.171528 ACTCTGTGTAACCCTAACCCTC 58.828 50.000 0.00 0.00 34.36 4.30
260 261 3.171528 GACTCTGTGTAACCCTAACCCT 58.828 50.000 0.00 0.00 34.36 4.34
261 262 2.094338 CGACTCTGTGTAACCCTAACCC 60.094 54.545 0.00 0.00 34.36 4.11
262 263 2.094338 CCGACTCTGTGTAACCCTAACC 60.094 54.545 0.00 0.00 34.36 2.85
263 264 2.560105 ACCGACTCTGTGTAACCCTAAC 59.440 50.000 0.00 0.00 34.36 2.34
264 265 2.880443 ACCGACTCTGTGTAACCCTAA 58.120 47.619 0.00 0.00 34.36 2.69
265 266 2.592102 ACCGACTCTGTGTAACCCTA 57.408 50.000 0.00 0.00 34.36 3.53
266 267 1.713297 AACCGACTCTGTGTAACCCT 58.287 50.000 0.00 0.00 34.36 4.34
267 268 2.297033 TGTAACCGACTCTGTGTAACCC 59.703 50.000 0.00 0.00 34.36 4.11
268 269 3.648339 TGTAACCGACTCTGTGTAACC 57.352 47.619 0.00 0.00 34.36 2.85
269 270 4.387862 CCATTGTAACCGACTCTGTGTAAC 59.612 45.833 0.00 0.00 37.35 2.50
270 271 4.039488 ACCATTGTAACCGACTCTGTGTAA 59.961 41.667 0.00 0.00 0.00 2.41
271 272 3.575256 ACCATTGTAACCGACTCTGTGTA 59.425 43.478 0.00 0.00 0.00 2.90
272 273 2.367567 ACCATTGTAACCGACTCTGTGT 59.632 45.455 0.00 0.00 0.00 3.72
273 274 3.040147 ACCATTGTAACCGACTCTGTG 57.960 47.619 0.00 0.00 0.00 3.66
274 275 3.194968 CCTACCATTGTAACCGACTCTGT 59.805 47.826 0.00 0.00 0.00 3.41
275 276 3.446161 TCCTACCATTGTAACCGACTCTG 59.554 47.826 0.00 0.00 0.00 3.35
276 277 3.700038 CTCCTACCATTGTAACCGACTCT 59.300 47.826 0.00 0.00 0.00 3.24
277 278 3.698040 TCTCCTACCATTGTAACCGACTC 59.302 47.826 0.00 0.00 0.00 3.36
278 279 3.705051 TCTCCTACCATTGTAACCGACT 58.295 45.455 0.00 0.00 0.00 4.18
279 280 4.341520 AGATCTCCTACCATTGTAACCGAC 59.658 45.833 0.00 0.00 0.00 4.79
280 281 4.543689 AGATCTCCTACCATTGTAACCGA 58.456 43.478 0.00 0.00 0.00 4.69
281 282 4.939052 AGATCTCCTACCATTGTAACCG 57.061 45.455 0.00 0.00 0.00 4.44
282 283 6.726490 TGTAGATCTCCTACCATTGTAACC 57.274 41.667 0.00 0.00 45.60 2.85
284 285 9.256228 GGATATGTAGATCTCCTACCATTGTAA 57.744 37.037 0.00 0.00 45.60 2.41
285 286 7.556635 CGGATATGTAGATCTCCTACCATTGTA 59.443 40.741 0.00 0.00 45.60 2.41
286 287 6.378564 CGGATATGTAGATCTCCTACCATTGT 59.621 42.308 0.00 0.00 45.60 2.71
287 288 6.378564 ACGGATATGTAGATCTCCTACCATTG 59.621 42.308 0.00 0.00 45.60 2.82
288 289 6.494952 ACGGATATGTAGATCTCCTACCATT 58.505 40.000 0.00 0.00 45.60 3.16
289 290 6.080969 ACGGATATGTAGATCTCCTACCAT 57.919 41.667 0.00 0.00 45.60 3.55
290 291 5.516059 ACGGATATGTAGATCTCCTACCA 57.484 43.478 0.00 0.00 45.60 3.25
291 292 6.424509 CGATACGGATATGTAGATCTCCTACC 59.575 46.154 0.00 0.00 45.60 3.18
292 293 6.073657 GCGATACGGATATGTAGATCTCCTAC 60.074 46.154 0.00 0.00 46.21 3.18
293 294 5.990386 GCGATACGGATATGTAGATCTCCTA 59.010 44.000 0.00 0.00 0.00 2.94
294 295 4.817464 GCGATACGGATATGTAGATCTCCT 59.183 45.833 0.00 0.00 0.00 3.69
295 296 4.023878 GGCGATACGGATATGTAGATCTCC 60.024 50.000 0.00 0.00 0.00 3.71
296 297 4.575236 TGGCGATACGGATATGTAGATCTC 59.425 45.833 0.00 0.00 0.00 2.75
297 298 4.524053 TGGCGATACGGATATGTAGATCT 58.476 43.478 0.00 0.00 0.00 2.75
298 299 4.895224 TGGCGATACGGATATGTAGATC 57.105 45.455 0.00 0.00 0.00 2.75
299 300 4.440250 GCTTGGCGATACGGATATGTAGAT 60.440 45.833 0.00 0.00 0.00 1.98
300 301 3.119602 GCTTGGCGATACGGATATGTAGA 60.120 47.826 0.00 0.00 0.00 2.59
301 302 3.119459 AGCTTGGCGATACGGATATGTAG 60.119 47.826 0.00 0.00 0.00 2.74
302 303 2.823747 AGCTTGGCGATACGGATATGTA 59.176 45.455 0.00 0.00 0.00 2.29
303 304 1.618837 AGCTTGGCGATACGGATATGT 59.381 47.619 0.00 0.00 0.00 2.29
304 305 2.370281 AGCTTGGCGATACGGATATG 57.630 50.000 0.00 0.00 0.00 1.78
305 306 2.688507 CAAGCTTGGCGATACGGATAT 58.311 47.619 19.14 0.00 0.00 1.63
306 307 1.872237 GCAAGCTTGGCGATACGGATA 60.872 52.381 27.10 0.00 0.00 2.59
307 308 1.160329 GCAAGCTTGGCGATACGGAT 61.160 55.000 27.10 0.00 0.00 4.18
308 309 1.813753 GCAAGCTTGGCGATACGGA 60.814 57.895 27.10 0.00 0.00 4.69
309 310 2.709475 GCAAGCTTGGCGATACGG 59.291 61.111 27.10 0.00 0.00 4.02
310 311 2.709475 GGCAAGCTTGGCGATACG 59.291 61.111 33.68 4.49 43.97 3.06
317 318 2.956987 CGTGGAAGGCAAGCTTGG 59.043 61.111 27.10 9.80 0.00 3.61
326 327 0.537371 ACTTTCCTTGGCGTGGAAGG 60.537 55.000 15.33 15.33 43.48 3.46
327 328 0.875059 GACTTTCCTTGGCGTGGAAG 59.125 55.000 10.20 8.04 43.48 3.46
328 329 0.536460 GGACTTTCCTTGGCGTGGAA 60.536 55.000 6.88 6.88 41.33 3.53
329 330 1.072505 GGACTTTCCTTGGCGTGGA 59.927 57.895 0.00 0.00 32.53 4.02
330 331 1.971695 GGGACTTTCCTTGGCGTGG 60.972 63.158 0.00 0.00 36.57 4.94
331 332 0.609131 ATGGGACTTTCCTTGGCGTG 60.609 55.000 0.00 0.00 36.57 5.34
332 333 0.322546 GATGGGACTTTCCTTGGCGT 60.323 55.000 0.00 0.00 36.57 5.68
333 334 0.035056 AGATGGGACTTTCCTTGGCG 60.035 55.000 0.00 0.00 36.57 5.69
334 335 1.467920 CAGATGGGACTTTCCTTGGC 58.532 55.000 0.00 0.00 36.57 4.52
335 336 1.635487 TCCAGATGGGACTTTCCTTGG 59.365 52.381 0.00 0.00 42.15 3.61
345 346 1.114627 CGTCTCATGTCCAGATGGGA 58.885 55.000 0.00 0.00 45.89 4.37
346 347 1.114627 TCGTCTCATGTCCAGATGGG 58.885 55.000 0.00 0.00 35.41 4.00
347 348 2.167281 ACTTCGTCTCATGTCCAGATGG 59.833 50.000 0.00 0.00 0.00 3.51
348 349 3.130164 AGACTTCGTCTCATGTCCAGATG 59.870 47.826 0.00 0.00 38.71 2.90
349 350 3.360867 AGACTTCGTCTCATGTCCAGAT 58.639 45.455 0.00 0.00 38.71 2.90
350 351 2.796557 AGACTTCGTCTCATGTCCAGA 58.203 47.619 0.00 0.00 38.71 3.86
351 352 3.057245 TGAAGACTTCGTCTCATGTCCAG 60.057 47.826 10.56 0.00 42.59 3.86
352 353 2.890945 TGAAGACTTCGTCTCATGTCCA 59.109 45.455 10.56 0.00 42.59 4.02
353 354 3.577649 TGAAGACTTCGTCTCATGTCC 57.422 47.619 10.56 0.00 42.59 4.02
354 355 5.406649 AGATTGAAGACTTCGTCTCATGTC 58.593 41.667 14.05 0.00 42.59 3.06
355 356 5.398603 AGATTGAAGACTTCGTCTCATGT 57.601 39.130 14.05 0.00 42.59 3.21
356 357 5.636965 ACAAGATTGAAGACTTCGTCTCATG 59.363 40.000 18.03 16.07 42.59 3.07
357 358 5.788450 ACAAGATTGAAGACTTCGTCTCAT 58.212 37.500 18.03 10.10 42.59 2.90
358 359 5.201713 ACAAGATTGAAGACTTCGTCTCA 57.798 39.130 18.03 0.00 42.59 3.27
359 360 7.254852 AGATACAAGATTGAAGACTTCGTCTC 58.745 38.462 18.03 11.38 42.59 3.36
360 361 7.164230 AGATACAAGATTGAAGACTTCGTCT 57.836 36.000 14.05 14.05 45.64 4.18
361 362 7.542477 TGAAGATACAAGATTGAAGACTTCGTC 59.458 37.037 10.56 10.67 34.37 4.20
362 363 7.378966 TGAAGATACAAGATTGAAGACTTCGT 58.621 34.615 10.56 1.87 34.37 3.85
363 364 7.818493 TGAAGATACAAGATTGAAGACTTCG 57.182 36.000 10.56 0.00 34.37 3.79
371 372 9.421399 TCCTGTACTATGAAGATACAAGATTGA 57.579 33.333 0.00 0.00 0.00 2.57
372 373 9.689976 CTCCTGTACTATGAAGATACAAGATTG 57.310 37.037 0.00 0.00 0.00 2.67
373 374 9.427821 ACTCCTGTACTATGAAGATACAAGATT 57.572 33.333 0.00 0.00 0.00 2.40
374 375 9.073475 GACTCCTGTACTATGAAGATACAAGAT 57.927 37.037 0.00 0.00 0.00 2.40
375 376 7.502895 GGACTCCTGTACTATGAAGATACAAGA 59.497 40.741 0.00 0.00 0.00 3.02
376 377 7.520776 CGGACTCCTGTACTATGAAGATACAAG 60.521 44.444 0.00 0.00 0.00 3.16
377 378 6.262496 CGGACTCCTGTACTATGAAGATACAA 59.738 42.308 0.00 0.00 0.00 2.41
378 379 5.763698 CGGACTCCTGTACTATGAAGATACA 59.236 44.000 0.00 0.00 0.00 2.29
379 380 5.181622 CCGGACTCCTGTACTATGAAGATAC 59.818 48.000 0.00 0.00 0.00 2.24
380 381 5.314529 CCGGACTCCTGTACTATGAAGATA 58.685 45.833 0.00 0.00 0.00 1.98
381 382 4.145807 CCGGACTCCTGTACTATGAAGAT 58.854 47.826 0.00 0.00 0.00 2.40
382 383 3.552875 CCGGACTCCTGTACTATGAAGA 58.447 50.000 0.00 0.00 0.00 2.87
383 384 2.034812 GCCGGACTCCTGTACTATGAAG 59.965 54.545 5.05 0.00 0.00 3.02
384 385 2.029623 GCCGGACTCCTGTACTATGAA 58.970 52.381 5.05 0.00 0.00 2.57
385 386 1.688772 GCCGGACTCCTGTACTATGA 58.311 55.000 5.05 0.00 0.00 2.15
386 387 0.674534 GGCCGGACTCCTGTACTATG 59.325 60.000 5.05 0.00 0.00 2.23
387 388 0.822532 CGGCCGGACTCCTGTACTAT 60.823 60.000 20.10 0.00 0.00 2.12
388 389 1.452651 CGGCCGGACTCCTGTACTA 60.453 63.158 20.10 0.00 0.00 1.82
389 390 2.754658 CGGCCGGACTCCTGTACT 60.755 66.667 20.10 0.00 0.00 2.73
390 391 2.280823 CTTCGGCCGGACTCCTGTAC 62.281 65.000 27.83 0.00 0.00 2.90
391 392 2.036098 TTCGGCCGGACTCCTGTA 59.964 61.111 27.83 0.00 0.00 2.74
392 393 3.382832 CTTCGGCCGGACTCCTGT 61.383 66.667 27.83 0.00 0.00 4.00
393 394 2.427245 ATCTTCGGCCGGACTCCTG 61.427 63.158 27.83 3.83 0.00 3.86
394 395 2.042843 ATCTTCGGCCGGACTCCT 60.043 61.111 27.83 2.38 0.00 3.69
395 396 1.749334 ATCATCTTCGGCCGGACTCC 61.749 60.000 27.83 0.00 0.00 3.85
396 397 0.959553 TATCATCTTCGGCCGGACTC 59.040 55.000 27.83 0.00 0.00 3.36
397 398 0.962489 CTATCATCTTCGGCCGGACT 59.038 55.000 27.83 0.52 0.00 3.85
398 399 0.674534 ACTATCATCTTCGGCCGGAC 59.325 55.000 27.83 0.00 0.00 4.79
399 400 1.340248 GAACTATCATCTTCGGCCGGA 59.660 52.381 27.83 17.96 0.00 5.14
400 401 1.784525 GAACTATCATCTTCGGCCGG 58.215 55.000 27.83 10.69 0.00 6.13
401 402 1.409412 CGAACTATCATCTTCGGCCG 58.591 55.000 22.12 22.12 36.46 6.13
420 421 2.668106 TAGGGGGTGTCCGGATAGCC 62.668 65.000 34.24 34.24 39.05 3.93
421 422 1.152398 TAGGGGGTGTCCGGATAGC 60.152 63.158 20.91 20.91 36.01 2.97
422 423 0.187851 ACTAGGGGGTGTCCGGATAG 59.812 60.000 7.81 5.89 36.01 2.08
423 424 0.186873 GACTAGGGGGTGTCCGGATA 59.813 60.000 7.81 0.10 36.01 2.59
424 425 1.075450 GACTAGGGGGTGTCCGGAT 60.075 63.158 7.81 0.00 36.01 4.18
425 426 2.361771 GACTAGGGGGTGTCCGGA 59.638 66.667 0.00 0.00 36.01 5.14
426 427 2.762875 GGACTAGGGGGTGTCCGG 60.763 72.222 0.00 0.00 42.51 5.14
428 429 2.762875 CCGGACTAGGGGGTGTCC 60.763 72.222 0.00 0.00 46.69 4.02
429 430 1.305549 TTCCGGACTAGGGGGTGTC 60.306 63.158 1.83 0.00 0.00 3.67
430 431 1.611556 GTTCCGGACTAGGGGGTGT 60.612 63.158 1.83 0.00 0.00 4.16
431 432 1.305887 AGTTCCGGACTAGGGGGTG 60.306 63.158 1.83 0.00 36.65 4.61
432 433 1.001376 GAGTTCCGGACTAGGGGGT 59.999 63.158 1.83 0.00 39.19 4.95
433 434 1.761271 GGAGTTCCGGACTAGGGGG 60.761 68.421 1.83 0.00 39.19 5.40
434 435 0.398664 ATGGAGTTCCGGACTAGGGG 60.399 60.000 1.83 0.00 39.19 4.79
435 436 1.497161 AATGGAGTTCCGGACTAGGG 58.503 55.000 1.83 0.00 39.19 3.53
436 437 2.628657 CCTAATGGAGTTCCGGACTAGG 59.371 54.545 1.83 4.64 39.19 3.02
437 438 2.628657 CCCTAATGGAGTTCCGGACTAG 59.371 54.545 1.83 0.00 39.19 2.57
438 439 2.245546 TCCCTAATGGAGTTCCGGACTA 59.754 50.000 1.83 0.00 38.61 2.59
439 440 1.007963 TCCCTAATGGAGTTCCGGACT 59.992 52.381 1.83 4.69 38.61 3.85
440 441 1.138464 GTCCCTAATGGAGTTCCGGAC 59.862 57.143 1.83 0.00 46.38 4.79
441 442 1.273381 TGTCCCTAATGGAGTTCCGGA 60.273 52.381 0.00 0.00 46.38 5.14
442 443 1.200519 TGTCCCTAATGGAGTTCCGG 58.799 55.000 0.00 0.00 46.38 5.14
443 444 3.055385 TCTTTGTCCCTAATGGAGTTCCG 60.055 47.826 0.00 0.00 46.38 4.30
444 445 4.262617 GTCTTTGTCCCTAATGGAGTTCC 58.737 47.826 0.00 0.00 46.38 3.62
445 446 3.933332 CGTCTTTGTCCCTAATGGAGTTC 59.067 47.826 0.00 0.00 46.38 3.01
446 447 3.868754 GCGTCTTTGTCCCTAATGGAGTT 60.869 47.826 0.00 0.00 46.38 3.01
447 448 2.354805 GCGTCTTTGTCCCTAATGGAGT 60.355 50.000 0.00 0.00 46.38 3.85
448 449 2.280628 GCGTCTTTGTCCCTAATGGAG 58.719 52.381 0.00 0.00 46.38 3.86
449 450 1.065709 GGCGTCTTTGTCCCTAATGGA 60.066 52.381 0.00 0.00 42.41 3.41
450 451 1.065418 AGGCGTCTTTGTCCCTAATGG 60.065 52.381 0.00 0.00 0.00 3.16
451 452 2.403252 AGGCGTCTTTGTCCCTAATG 57.597 50.000 0.00 0.00 0.00 1.90
452 453 2.572104 AGAAGGCGTCTTTGTCCCTAAT 59.428 45.455 2.60 0.00 29.66 1.73
453 454 1.975680 AGAAGGCGTCTTTGTCCCTAA 59.024 47.619 2.60 0.00 29.66 2.69
640 641 2.927477 GACACGCATTATCTTCCAACGA 59.073 45.455 0.00 0.00 0.00 3.85
651 652 1.990799 CTCCGAGTTGACACGCATTA 58.009 50.000 0.00 0.00 0.00 1.90
738 739 3.953542 ACCTTGAACCAACCTTCTTCT 57.046 42.857 0.00 0.00 0.00 2.85
750 751 3.733443 AGTCCAAATGCAACCTTGAAC 57.267 42.857 7.83 0.00 0.00 3.18
776 777 0.178843 ACCAAAGGGGAAGGGCTCTA 60.179 55.000 0.00 0.00 41.15 2.43
871 873 0.752009 TGGTTGCTTGTAAACGGGCA 60.752 50.000 0.00 0.00 0.00 5.36
983 985 4.479619 GTCCATTGTCTCTTGCAAATGAC 58.520 43.478 18.87 18.87 32.31 3.06
1007 1009 1.544246 CACGGGAAAAAGGGATGGAAC 59.456 52.381 0.00 0.00 0.00 3.62
1042 1045 2.421739 GGGACCATCGTCATCCGG 59.578 66.667 0.00 0.00 41.13 5.14
1196 1199 4.247814 TGGCCTAACCCCAACAGATATAT 58.752 43.478 3.32 0.00 37.83 0.86
1253 1256 5.385198 TGAACTTAGACCCTTTTGCAATCT 58.615 37.500 0.00 1.92 0.00 2.40
1276 1279 8.423349 TCACATCTTCAATTCCAAGAATGTTTT 58.577 29.630 1.35 0.00 33.57 2.43
1302 1305 3.854784 GCGTAACCGAGTAGTTGTTGAGT 60.855 47.826 0.00 0.00 35.63 3.41
1306 1309 2.798976 TGCGTAACCGAGTAGTTGTT 57.201 45.000 0.00 0.00 35.63 2.83
1347 1350 0.666274 GCACATTGACGTCCGAGTGA 60.666 55.000 25.72 1.68 0.00 3.41
1404 1407 0.871722 TTGCACGTACAATCCACAGC 59.128 50.000 0.00 0.00 0.00 4.40
1416 1419 1.238439 CTTTCCATGGTCTTGCACGT 58.762 50.000 12.58 0.00 0.00 4.49
1588 1591 5.448225 GGTCAATGACATGTTGTATGCTCAG 60.448 44.000 15.86 0.00 33.68 3.35
1596 1599 4.206375 TCACAAGGTCAATGACATGTTGT 58.794 39.130 15.86 16.54 33.89 3.32
1816 1819 1.287425 CGGCCAAATACTCGGACTTC 58.713 55.000 2.24 0.00 0.00 3.01
2130 2135 2.745884 CAACGAAGCATGCCCGGA 60.746 61.111 26.60 0.00 0.00 5.14
2252 2257 0.663153 ACAAAGTGGTGAAGCGCTTC 59.337 50.000 37.21 37.21 39.91 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.