Multiple sequence alignment - TraesCS7B01G122000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G122000 chr7B 100.000 2630 0 0 1 2630 143156295 143153666 0.000000e+00 4857.0
1 TraesCS7B01G122000 chr7B 93.421 380 20 4 291 668 112331344 112331720 2.290000e-155 558.0
2 TraesCS7B01G122000 chr7B 82.143 420 50 10 1517 1911 143180400 143179981 1.170000e-88 337.0
3 TraesCS7B01G122000 chr7B 80.171 469 72 10 1039 1507 143198939 143198492 5.430000e-87 331.0
4 TraesCS7B01G122000 chr7B 80.637 377 53 12 2101 2475 604103858 604103500 9.270000e-70 274.0
5 TraesCS7B01G122000 chr7D 90.714 1863 116 18 664 2515 176572497 176570681 0.000000e+00 2429.0
6 TraesCS7B01G122000 chr7D 89.272 1277 103 17 1245 2515 176768061 176766813 0.000000e+00 1568.0
7 TraesCS7B01G122000 chr7D 93.092 304 21 0 1 304 176583589 176583286 1.860000e-121 446.0
8 TraesCS7B01G122000 chr7D 92.333 300 23 0 1 300 176572787 176572488 6.730000e-116 427.0
9 TraesCS7B01G122000 chr7D 91.121 214 13 6 664 873 176583299 176583088 4.280000e-73 285.0
10 TraesCS7B01G122000 chr7A 92.982 1482 86 7 664 2137 179530852 179529381 0.000000e+00 2145.0
11 TraesCS7B01G122000 chr7A 89.296 1663 102 26 712 2367 179890086 179888493 0.000000e+00 2015.0
12 TraesCS7B01G122000 chr7A 90.689 1525 114 18 1004 2514 180342200 180340690 0.000000e+00 2004.0
13 TraesCS7B01G122000 chr7A 89.818 1542 112 16 1004 2514 180161708 180160181 0.000000e+00 1936.0
14 TraesCS7B01G122000 chr7A 95.000 300 15 0 1 300 179531142 179530843 3.060000e-129 472.0
15 TraesCS7B01G122000 chr7A 94.098 305 17 1 1 304 180344538 180344234 1.840000e-126 462.0
16 TraesCS7B01G122000 chr7A 94.314 299 16 1 7 304 180163829 180163531 8.580000e-125 457.0
17 TraesCS7B01G122000 chr7A 92.434 304 23 0 1 304 179904082 179903779 4.020000e-118 435.0
18 TraesCS7B01G122000 chr7A 93.782 193 7 4 664 853 180163544 180163354 4.280000e-73 285.0
19 TraesCS7B01G122000 chr7A 88.983 236 14 10 664 895 180344247 180344020 5.540000e-72 281.0
20 TraesCS7B01G122000 chr7A 86.449 214 28 1 2222 2434 179529373 179529160 1.570000e-57 233.0
21 TraesCS7B01G122000 chr7A 96.078 51 2 0 664 714 179903792 179903742 1.680000e-12 84.2
22 TraesCS7B01G122000 chr4B 92.895 380 21 5 291 668 402754289 402754664 4.950000e-152 547.0
23 TraesCS7B01G122000 chr4B 98.936 94 1 0 2537 2630 61129272 61129365 4.500000e-38 169.0
24 TraesCS7B01G122000 chr4B 98.936 94 1 0 2537 2630 96237672 96237579 4.500000e-38 169.0
25 TraesCS7B01G122000 chr4B 98.936 94 1 0 2537 2630 140185080 140185173 4.500000e-38 169.0
26 TraesCS7B01G122000 chr4B 98.936 94 1 0 2537 2630 192735165 192735258 4.500000e-38 169.0
27 TraesCS7B01G122000 chr4B 98.936 94 1 0 2537 2630 204176173 204176080 4.500000e-38 169.0
28 TraesCS7B01G122000 chr4B 98.936 94 1 0 2537 2630 337237008 337236915 4.500000e-38 169.0
29 TraesCS7B01G122000 chr4B 98.936 94 1 0 2537 2630 522035644 522035551 4.500000e-38 169.0
30 TraesCS7B01G122000 chr4B 83.077 195 24 4 2106 2299 656807870 656807684 4.500000e-38 169.0
31 TraesCS7B01G122000 chr5B 91.176 374 28 4 293 664 680316527 680316897 1.090000e-138 503.0
32 TraesCS7B01G122000 chr5B 100.000 94 0 0 2537 2630 591091629 591091536 9.680000e-40 174.0
33 TraesCS7B01G122000 chr3B 88.360 378 28 8 290 664 542923624 542923988 8.640000e-120 440.0
34 TraesCS7B01G122000 chr3B 79.692 325 55 9 288 609 817562383 817562699 9.470000e-55 224.0
35 TraesCS7B01G122000 chr4A 91.824 318 20 5 289 604 647049207 647049520 3.110000e-119 438.0
36 TraesCS7B01G122000 chr4A 78.788 165 22 6 2156 2318 638671014 638671167 5.990000e-17 99.0
37 TraesCS7B01G122000 chr4A 96.078 51 1 1 620 669 647049518 647049568 6.030000e-12 82.4
38 TraesCS7B01G122000 chr5A 84.661 339 34 8 289 624 554681562 554681239 3.270000e-84 322.0
39 TraesCS7B01G122000 chr5A 83.881 335 36 8 293 624 11888129 11888448 1.180000e-78 303.0
40 TraesCS7B01G122000 chr4D 84.320 338 35 7 291 624 221295411 221295088 5.460000e-82 315.0
41 TraesCS7B01G122000 chr1D 85.159 283 32 4 2129 2410 63921970 63921697 5.540000e-72 281.0
42 TraesCS7B01G122000 chr6D 82.000 300 30 15 1 286 363446917 363446628 1.570000e-57 233.0
43 TraesCS7B01G122000 chr3D 83.028 218 21 6 2106 2320 264119564 264119768 1.610000e-42 183.0
44 TraesCS7B01G122000 chr5D 87.821 156 12 4 2228 2380 92170432 92170583 2.690000e-40 176.0
45 TraesCS7B01G122000 chr1B 97.959 98 1 1 2534 2630 653603836 653603739 4.500000e-38 169.0
46 TraesCS7B01G122000 chr1A 80.838 167 25 5 2133 2299 499734165 499734006 9.880000e-25 124.0
47 TraesCS7B01G122000 chr6A 81.818 154 19 5 2125 2278 206487421 206487565 1.280000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G122000 chr7B 143153666 143156295 2629 True 4857.000000 4857 100.000000 1 2630 1 chr7B.!!$R1 2629
1 TraesCS7B01G122000 chr7D 176766813 176768061 1248 True 1568.000000 1568 89.272000 1245 2515 1 chr7D.!!$R1 1270
2 TraesCS7B01G122000 chr7D 176570681 176572787 2106 True 1428.000000 2429 91.523500 1 2515 2 chr7D.!!$R2 2514
3 TraesCS7B01G122000 chr7D 176583088 176583589 501 True 365.500000 446 92.106500 1 873 2 chr7D.!!$R3 872
4 TraesCS7B01G122000 chr7A 179888493 179890086 1593 True 2015.000000 2015 89.296000 712 2367 1 chr7A.!!$R1 1655
5 TraesCS7B01G122000 chr7A 179529160 179531142 1982 True 950.000000 2145 91.477000 1 2434 3 chr7A.!!$R2 2433
6 TraesCS7B01G122000 chr7A 180340690 180344538 3848 True 915.666667 2004 91.256667 1 2514 3 chr7A.!!$R5 2513
7 TraesCS7B01G122000 chr7A 180160181 180163829 3648 True 892.666667 1936 92.638000 7 2514 3 chr7A.!!$R4 2507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 432 0.031111 TCTGATCCCCACGAATCCCT 60.031 55.0 0.0 0.0 0.0 4.20 F
432 434 0.031111 TGATCCCCACGAATCCCTCT 60.031 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 3154 0.460722 TCCAACACAAAGACGGACGA 59.539 50.000 0.00 0.0 0.0 4.20 R
2289 4088 1.593933 GGGCGTCGCGTTTTTATATCA 59.406 47.619 11.75 0.0 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 248 4.621068 ATGCGTTATGTGAATGGAAGTG 57.379 40.909 0.00 0.00 0.00 3.16
287 289 7.414540 GCACAACGATTCTGGAGATAAAATCTT 60.415 37.037 0.00 0.00 40.38 2.40
295 297 8.738645 TTCTGGAGATAAAATCTTCTTTAGGC 57.261 34.615 0.00 0.00 40.38 3.93
300 302 7.558081 GGAGATAAAATCTTCTTTAGGCCTTGT 59.442 37.037 12.58 0.00 40.38 3.16
304 306 5.728637 AATCTTCTTTAGGCCTTGTTTGG 57.271 39.130 12.58 0.00 0.00 3.28
305 307 4.178956 TCTTCTTTAGGCCTTGTTTGGT 57.821 40.909 12.58 0.00 0.00 3.67
306 308 3.888930 TCTTCTTTAGGCCTTGTTTGGTG 59.111 43.478 12.58 0.00 0.00 4.17
307 309 1.960689 TCTTTAGGCCTTGTTTGGTGC 59.039 47.619 12.58 0.00 0.00 5.01
308 310 1.686052 CTTTAGGCCTTGTTTGGTGCA 59.314 47.619 12.58 0.00 0.00 4.57
309 311 1.327303 TTAGGCCTTGTTTGGTGCAG 58.673 50.000 12.58 0.00 0.00 4.41
310 312 0.539438 TAGGCCTTGTTTGGTGCAGG 60.539 55.000 12.58 0.00 0.00 4.85
311 313 1.832167 GGCCTTGTTTGGTGCAGGA 60.832 57.895 0.00 0.00 0.00 3.86
312 314 1.662044 GCCTTGTTTGGTGCAGGAG 59.338 57.895 0.00 0.00 0.00 3.69
313 315 1.809567 GCCTTGTTTGGTGCAGGAGG 61.810 60.000 0.00 0.00 0.00 4.30
314 316 0.468029 CCTTGTTTGGTGCAGGAGGT 60.468 55.000 0.00 0.00 0.00 3.85
315 317 1.402787 CTTGTTTGGTGCAGGAGGTT 58.597 50.000 0.00 0.00 0.00 3.50
316 318 1.756538 CTTGTTTGGTGCAGGAGGTTT 59.243 47.619 0.00 0.00 0.00 3.27
317 319 1.110442 TGTTTGGTGCAGGAGGTTTG 58.890 50.000 0.00 0.00 0.00 2.93
318 320 0.389025 GTTTGGTGCAGGAGGTTTGG 59.611 55.000 0.00 0.00 0.00 3.28
319 321 0.758685 TTTGGTGCAGGAGGTTTGGG 60.759 55.000 0.00 0.00 0.00 4.12
320 322 2.283173 GGTGCAGGAGGTTTGGGG 60.283 66.667 0.00 0.00 0.00 4.96
321 323 2.840753 GGTGCAGGAGGTTTGGGGA 61.841 63.158 0.00 0.00 0.00 4.81
322 324 1.303643 GTGCAGGAGGTTTGGGGAG 60.304 63.158 0.00 0.00 0.00 4.30
323 325 1.463214 TGCAGGAGGTTTGGGGAGA 60.463 57.895 0.00 0.00 0.00 3.71
324 326 0.846427 TGCAGGAGGTTTGGGGAGAT 60.846 55.000 0.00 0.00 0.00 2.75
325 327 0.332972 GCAGGAGGTTTGGGGAGATT 59.667 55.000 0.00 0.00 0.00 2.40
326 328 1.272704 GCAGGAGGTTTGGGGAGATTT 60.273 52.381 0.00 0.00 0.00 2.17
327 329 2.450476 CAGGAGGTTTGGGGAGATTTG 58.550 52.381 0.00 0.00 0.00 2.32
328 330 1.359130 AGGAGGTTTGGGGAGATTTGG 59.641 52.381 0.00 0.00 0.00 3.28
329 331 1.357761 GGAGGTTTGGGGAGATTTGGA 59.642 52.381 0.00 0.00 0.00 3.53
330 332 2.225267 GGAGGTTTGGGGAGATTTGGAA 60.225 50.000 0.00 0.00 0.00 3.53
331 333 3.092301 GAGGTTTGGGGAGATTTGGAAG 58.908 50.000 0.00 0.00 0.00 3.46
332 334 2.179427 GGTTTGGGGAGATTTGGAAGG 58.821 52.381 0.00 0.00 0.00 3.46
333 335 2.179427 GTTTGGGGAGATTTGGAAGGG 58.821 52.381 0.00 0.00 0.00 3.95
334 336 1.766951 TTGGGGAGATTTGGAAGGGA 58.233 50.000 0.00 0.00 0.00 4.20
335 337 1.766951 TGGGGAGATTTGGAAGGGAA 58.233 50.000 0.00 0.00 0.00 3.97
336 338 2.297044 TGGGGAGATTTGGAAGGGAAT 58.703 47.619 0.00 0.00 0.00 3.01
337 339 3.480012 TGGGGAGATTTGGAAGGGAATA 58.520 45.455 0.00 0.00 0.00 1.75
338 340 4.061657 TGGGGAGATTTGGAAGGGAATAT 58.938 43.478 0.00 0.00 0.00 1.28
339 341 4.106341 TGGGGAGATTTGGAAGGGAATATC 59.894 45.833 0.00 0.00 0.00 1.63
340 342 4.509302 GGGGAGATTTGGAAGGGAATATCC 60.509 50.000 2.07 2.07 40.96 2.59
358 360 3.603365 CGCAGGGTCCAAAATCCC 58.397 61.111 0.00 0.00 43.71 3.85
367 369 4.215908 GGGTCCAAAATCCCTAGAAATCC 58.784 47.826 0.00 0.00 40.48 3.01
368 370 4.079154 GGGTCCAAAATCCCTAGAAATCCT 60.079 45.833 0.00 0.00 40.48 3.24
369 371 5.133941 GGTCCAAAATCCCTAGAAATCCTC 58.866 45.833 0.00 0.00 0.00 3.71
370 372 4.816925 GTCCAAAATCCCTAGAAATCCTCG 59.183 45.833 0.00 0.00 0.00 4.63
371 373 4.473559 TCCAAAATCCCTAGAAATCCTCGT 59.526 41.667 0.00 0.00 0.00 4.18
372 374 4.816925 CCAAAATCCCTAGAAATCCTCGTC 59.183 45.833 0.00 0.00 0.00 4.20
373 375 5.428253 CAAAATCCCTAGAAATCCTCGTCA 58.572 41.667 0.00 0.00 0.00 4.35
374 376 4.946478 AATCCCTAGAAATCCTCGTCAG 57.054 45.455 0.00 0.00 0.00 3.51
375 377 2.032620 TCCCTAGAAATCCTCGTCAGC 58.967 52.381 0.00 0.00 0.00 4.26
376 378 1.069358 CCCTAGAAATCCTCGTCAGCC 59.931 57.143 0.00 0.00 0.00 4.85
377 379 1.069358 CCTAGAAATCCTCGTCAGCCC 59.931 57.143 0.00 0.00 0.00 5.19
378 380 1.757118 CTAGAAATCCTCGTCAGCCCA 59.243 52.381 0.00 0.00 0.00 5.36
379 381 1.207791 AGAAATCCTCGTCAGCCCAT 58.792 50.000 0.00 0.00 0.00 4.00
380 382 1.561542 AGAAATCCTCGTCAGCCCATT 59.438 47.619 0.00 0.00 0.00 3.16
381 383 2.025887 AGAAATCCTCGTCAGCCCATTT 60.026 45.455 0.00 0.00 0.00 2.32
382 384 1.755179 AATCCTCGTCAGCCCATTTG 58.245 50.000 0.00 0.00 0.00 2.32
383 385 0.107017 ATCCTCGTCAGCCCATTTGG 60.107 55.000 0.00 0.00 37.09 3.28
392 394 2.904905 CCCATTTGGCATGCAGGG 59.095 61.111 21.36 17.12 0.00 4.45
393 395 1.686455 CCCATTTGGCATGCAGGGA 60.686 57.895 21.36 2.15 38.60 4.20
394 396 1.052124 CCCATTTGGCATGCAGGGAT 61.052 55.000 21.36 4.65 38.60 3.85
395 397 0.834612 CCATTTGGCATGCAGGGATT 59.165 50.000 21.36 0.00 0.00 3.01
396 398 1.474320 CCATTTGGCATGCAGGGATTG 60.474 52.381 21.36 8.63 0.00 2.67
397 399 0.834612 ATTTGGCATGCAGGGATTGG 59.165 50.000 21.36 0.00 0.00 3.16
398 400 1.266160 TTTGGCATGCAGGGATTGGG 61.266 55.000 21.36 0.00 0.00 4.12
399 401 3.543641 GGCATGCAGGGATTGGGC 61.544 66.667 21.36 0.00 0.00 5.36
400 402 3.908081 GCATGCAGGGATTGGGCG 61.908 66.667 14.21 0.00 0.00 6.13
401 403 3.221389 CATGCAGGGATTGGGCGG 61.221 66.667 0.00 0.00 0.00 6.13
402 404 4.528039 ATGCAGGGATTGGGCGGG 62.528 66.667 0.00 0.00 0.00 6.13
418 420 2.597903 GGCCAACCCCTCTGATCC 59.402 66.667 0.00 0.00 0.00 3.36
419 421 2.597903 GCCAACCCCTCTGATCCC 59.402 66.667 0.00 0.00 0.00 3.85
420 422 3.061905 GCCAACCCCTCTGATCCCC 62.062 68.421 0.00 0.00 0.00 4.81
421 423 1.619363 CCAACCCCTCTGATCCCCA 60.619 63.158 0.00 0.00 0.00 4.96
422 424 1.609783 CAACCCCTCTGATCCCCAC 59.390 63.158 0.00 0.00 0.00 4.61
423 425 1.995626 AACCCCTCTGATCCCCACG 60.996 63.158 0.00 0.00 0.00 4.94
424 426 2.041922 CCCCTCTGATCCCCACGA 60.042 66.667 0.00 0.00 0.00 4.35
425 427 1.689233 CCCCTCTGATCCCCACGAA 60.689 63.158 0.00 0.00 0.00 3.85
426 428 1.056700 CCCCTCTGATCCCCACGAAT 61.057 60.000 0.00 0.00 0.00 3.34
427 429 0.394565 CCCTCTGATCCCCACGAATC 59.605 60.000 0.00 0.00 0.00 2.52
428 430 0.394565 CCTCTGATCCCCACGAATCC 59.605 60.000 0.00 0.00 0.00 3.01
429 431 0.394565 CTCTGATCCCCACGAATCCC 59.605 60.000 0.00 0.00 0.00 3.85
430 432 0.031111 TCTGATCCCCACGAATCCCT 60.031 55.000 0.00 0.00 0.00 4.20
431 433 0.394565 CTGATCCCCACGAATCCCTC 59.605 60.000 0.00 0.00 0.00 4.30
432 434 0.031111 TGATCCCCACGAATCCCTCT 60.031 55.000 0.00 0.00 0.00 3.69
433 435 0.682292 GATCCCCACGAATCCCTCTC 59.318 60.000 0.00 0.00 0.00 3.20
434 436 0.031111 ATCCCCACGAATCCCTCTCA 60.031 55.000 0.00 0.00 0.00 3.27
435 437 0.252513 TCCCCACGAATCCCTCTCAA 60.253 55.000 0.00 0.00 0.00 3.02
436 438 0.839946 CCCCACGAATCCCTCTCAAT 59.160 55.000 0.00 0.00 0.00 2.57
437 439 1.202698 CCCCACGAATCCCTCTCAATC 60.203 57.143 0.00 0.00 0.00 2.67
438 440 1.202698 CCCACGAATCCCTCTCAATCC 60.203 57.143 0.00 0.00 0.00 3.01
439 441 1.486310 CCACGAATCCCTCTCAATCCA 59.514 52.381 0.00 0.00 0.00 3.41
440 442 2.105477 CCACGAATCCCTCTCAATCCAT 59.895 50.000 0.00 0.00 0.00 3.41
441 443 3.136763 CACGAATCCCTCTCAATCCATG 58.863 50.000 0.00 0.00 0.00 3.66
442 444 2.774234 ACGAATCCCTCTCAATCCATGT 59.226 45.455 0.00 0.00 0.00 3.21
443 445 3.136763 CGAATCCCTCTCAATCCATGTG 58.863 50.000 0.00 0.00 0.00 3.21
444 446 3.484407 GAATCCCTCTCAATCCATGTGG 58.516 50.000 0.00 0.00 0.00 4.17
445 447 1.971149 TCCCTCTCAATCCATGTGGT 58.029 50.000 0.00 0.00 36.34 4.16
446 448 3.129262 TCCCTCTCAATCCATGTGGTA 57.871 47.619 0.00 0.00 36.34 3.25
447 449 2.771943 TCCCTCTCAATCCATGTGGTAC 59.228 50.000 0.00 0.00 36.34 3.34
448 450 2.505407 CCCTCTCAATCCATGTGGTACA 59.495 50.000 0.00 0.00 36.34 2.90
449 451 3.432749 CCCTCTCAATCCATGTGGTACAG 60.433 52.174 0.00 0.00 41.80 2.74
450 452 3.452264 CCTCTCAATCCATGTGGTACAGA 59.548 47.826 0.00 0.00 41.80 3.41
451 453 4.080919 CCTCTCAATCCATGTGGTACAGAA 60.081 45.833 0.00 0.00 41.80 3.02
452 454 5.491070 CTCTCAATCCATGTGGTACAGAAA 58.509 41.667 0.00 0.00 41.80 2.52
453 455 5.875224 TCTCAATCCATGTGGTACAGAAAA 58.125 37.500 0.00 0.00 41.80 2.29
454 456 5.705441 TCTCAATCCATGTGGTACAGAAAAC 59.295 40.000 0.00 0.00 41.80 2.43
455 457 4.764823 TCAATCCATGTGGTACAGAAAACC 59.235 41.667 0.00 0.00 41.80 3.27
456 458 3.149005 TCCATGTGGTACAGAAAACCC 57.851 47.619 0.00 0.00 41.80 4.11
457 459 2.167662 CCATGTGGTACAGAAAACCCC 58.832 52.381 0.00 0.00 41.80 4.95
458 460 2.167662 CATGTGGTACAGAAAACCCCC 58.832 52.381 0.00 0.00 41.80 5.40
459 461 0.108963 TGTGGTACAGAAAACCCCCG 59.891 55.000 0.00 0.00 41.80 5.73
460 462 0.607217 GTGGTACAGAAAACCCCCGG 60.607 60.000 0.00 0.00 41.80 5.73
461 463 0.767446 TGGTACAGAAAACCCCCGGA 60.767 55.000 0.73 0.00 36.06 5.14
462 464 0.035725 GGTACAGAAAACCCCCGGAG 60.036 60.000 0.73 0.00 0.00 4.63
463 465 0.675837 GTACAGAAAACCCCCGGAGC 60.676 60.000 0.73 0.00 0.00 4.70
464 466 1.844544 TACAGAAAACCCCCGGAGCC 61.845 60.000 0.73 0.00 0.00 4.70
465 467 2.856988 AGAAAACCCCCGGAGCCA 60.857 61.111 0.73 0.00 0.00 4.75
466 468 2.675423 GAAAACCCCCGGAGCCAC 60.675 66.667 0.73 0.00 0.00 5.01
467 469 4.295199 AAAACCCCCGGAGCCACC 62.295 66.667 0.73 0.00 0.00 4.61
475 477 4.410400 CGGAGCCACCCAGGGAAC 62.410 72.222 14.54 0.00 38.09 3.62
476 478 3.256960 GGAGCCACCCAGGGAACA 61.257 66.667 14.54 0.00 38.09 3.18
477 479 2.352805 GAGCCACCCAGGGAACAG 59.647 66.667 14.54 0.00 38.09 3.16
478 480 2.121963 AGCCACCCAGGGAACAGA 60.122 61.111 14.54 0.00 38.09 3.41
479 481 2.190488 GAGCCACCCAGGGAACAGAG 62.190 65.000 14.54 0.00 38.09 3.35
480 482 2.224159 GCCACCCAGGGAACAGAGA 61.224 63.158 14.54 0.00 38.09 3.10
481 483 1.779061 GCCACCCAGGGAACAGAGAA 61.779 60.000 14.54 0.00 38.09 2.87
482 484 0.326264 CCACCCAGGGAACAGAGAAG 59.674 60.000 14.54 0.00 0.00 2.85
483 485 1.352083 CACCCAGGGAACAGAGAAGA 58.648 55.000 14.54 0.00 0.00 2.87
484 486 1.277557 CACCCAGGGAACAGAGAAGAG 59.722 57.143 14.54 0.00 0.00 2.85
485 487 1.132689 ACCCAGGGAACAGAGAAGAGT 60.133 52.381 14.54 0.00 0.00 3.24
486 488 1.981495 CCCAGGGAACAGAGAAGAGTT 59.019 52.381 0.00 0.00 0.00 3.01
487 489 2.289945 CCCAGGGAACAGAGAAGAGTTG 60.290 54.545 0.00 0.00 0.00 3.16
488 490 2.289945 CCAGGGAACAGAGAAGAGTTGG 60.290 54.545 0.00 0.00 0.00 3.77
489 491 2.634940 CAGGGAACAGAGAAGAGTTGGA 59.365 50.000 0.00 0.00 0.00 3.53
490 492 2.635427 AGGGAACAGAGAAGAGTTGGAC 59.365 50.000 0.00 0.00 0.00 4.02
491 493 2.610727 GGGAACAGAGAAGAGTTGGACG 60.611 54.545 0.00 0.00 0.00 4.79
492 494 2.062519 GAACAGAGAAGAGTTGGACGC 58.937 52.381 0.00 0.00 0.00 5.19
493 495 1.333177 ACAGAGAAGAGTTGGACGCT 58.667 50.000 0.00 0.00 0.00 5.07
494 496 1.689273 ACAGAGAAGAGTTGGACGCTT 59.311 47.619 0.00 0.00 40.91 4.68
495 497 2.064762 CAGAGAAGAGTTGGACGCTTG 58.935 52.381 1.83 0.00 38.34 4.01
496 498 0.793250 GAGAAGAGTTGGACGCTTGC 59.207 55.000 1.83 0.00 38.34 4.01
497 499 0.394565 AGAAGAGTTGGACGCTTGCT 59.605 50.000 1.83 0.00 38.34 3.91
498 500 1.618837 AGAAGAGTTGGACGCTTGCTA 59.381 47.619 1.83 0.00 38.34 3.49
499 501 2.234908 AGAAGAGTTGGACGCTTGCTAT 59.765 45.455 1.83 0.00 38.34 2.97
500 502 2.015736 AGAGTTGGACGCTTGCTATG 57.984 50.000 0.00 0.00 0.00 2.23
501 503 0.375106 GAGTTGGACGCTTGCTATGC 59.625 55.000 0.00 0.00 0.00 3.14
502 504 0.036010 AGTTGGACGCTTGCTATGCT 60.036 50.000 0.00 0.00 0.00 3.79
503 505 0.097674 GTTGGACGCTTGCTATGCTG 59.902 55.000 0.00 0.00 0.00 4.41
504 506 1.647545 TTGGACGCTTGCTATGCTGC 61.648 55.000 0.00 0.00 0.00 5.25
505 507 1.817099 GGACGCTTGCTATGCTGCT 60.817 57.895 0.00 0.00 0.00 4.24
506 508 1.351012 GACGCTTGCTATGCTGCTG 59.649 57.895 0.00 0.00 0.00 4.41
507 509 2.024305 CGCTTGCTATGCTGCTGC 59.976 61.111 8.89 8.89 40.20 5.25
508 510 2.470362 CGCTTGCTATGCTGCTGCT 61.470 57.895 17.00 5.09 40.48 4.24
509 511 1.064296 GCTTGCTATGCTGCTGCTG 59.936 57.895 17.00 0.77 40.48 4.41
510 512 1.064296 CTTGCTATGCTGCTGCTGC 59.936 57.895 22.51 22.51 40.48 5.25
511 513 1.377366 CTTGCTATGCTGCTGCTGCT 61.377 55.000 27.67 17.30 40.48 4.24
512 514 1.654023 TTGCTATGCTGCTGCTGCTG 61.654 55.000 27.67 16.73 40.48 4.41
518 520 3.487417 CTGCTGCTGCTGCTGTAG 58.513 61.111 27.67 21.09 42.09 2.74
519 521 3.062639 TGCTGCTGCTGCTGTAGA 58.937 55.556 27.67 8.50 39.81 2.59
520 522 1.372307 TGCTGCTGCTGCTGTAGAA 59.628 52.632 27.67 14.04 39.81 2.10
521 523 0.250424 TGCTGCTGCTGCTGTAGAAA 60.250 50.000 27.67 11.29 39.81 2.52
522 524 0.447011 GCTGCTGCTGCTGTAGAAAG 59.553 55.000 24.24 9.54 39.81 2.62
523 525 1.805869 CTGCTGCTGCTGTAGAAAGT 58.194 50.000 17.28 0.00 40.48 2.66
524 526 2.149578 CTGCTGCTGCTGTAGAAAGTT 58.850 47.619 17.28 0.00 40.48 2.66
525 527 2.551459 CTGCTGCTGCTGTAGAAAGTTT 59.449 45.455 17.28 0.00 40.48 2.66
526 528 3.738982 TGCTGCTGCTGTAGAAAGTTTA 58.261 40.909 17.00 0.00 40.48 2.01
527 529 4.133820 TGCTGCTGCTGTAGAAAGTTTAA 58.866 39.130 17.00 0.00 40.48 1.52
528 530 4.024048 TGCTGCTGCTGTAGAAAGTTTAAC 60.024 41.667 17.00 0.00 40.48 2.01
529 531 4.613850 GCTGCTGCTGTAGAAAGTTTAACC 60.614 45.833 12.78 0.00 36.03 2.85
530 532 4.456535 TGCTGCTGTAGAAAGTTTAACCA 58.543 39.130 0.00 0.00 0.00 3.67
531 533 4.884744 TGCTGCTGTAGAAAGTTTAACCAA 59.115 37.500 0.00 0.00 0.00 3.67
532 534 5.358442 TGCTGCTGTAGAAAGTTTAACCAAA 59.642 36.000 0.00 0.00 0.00 3.28
533 535 6.040391 TGCTGCTGTAGAAAGTTTAACCAAAT 59.960 34.615 0.00 0.00 0.00 2.32
534 536 7.229707 TGCTGCTGTAGAAAGTTTAACCAAATA 59.770 33.333 0.00 0.00 0.00 1.40
535 537 7.750903 GCTGCTGTAGAAAGTTTAACCAAATAG 59.249 37.037 0.00 0.00 0.00 1.73
536 538 8.911918 TGCTGTAGAAAGTTTAACCAAATAGA 57.088 30.769 0.00 0.00 0.00 1.98
537 539 8.999431 TGCTGTAGAAAGTTTAACCAAATAGAG 58.001 33.333 0.00 0.00 0.00 2.43
538 540 9.216117 GCTGTAGAAAGTTTAACCAAATAGAGA 57.784 33.333 0.00 0.00 0.00 3.10
552 554 8.393959 ACCAAATAGAGAGATTTCTAAAGGGA 57.606 34.615 0.00 0.00 33.64 4.20
553 555 8.490311 ACCAAATAGAGAGATTTCTAAAGGGAG 58.510 37.037 0.00 0.00 33.64 4.30
554 556 8.709308 CCAAATAGAGAGATTTCTAAAGGGAGA 58.291 37.037 0.00 0.00 33.64 3.71
555 557 9.762933 CAAATAGAGAGATTTCTAAAGGGAGAG 57.237 37.037 0.00 0.00 33.64 3.20
556 558 8.491045 AATAGAGAGATTTCTAAAGGGAGAGG 57.509 38.462 0.00 0.00 33.64 3.69
557 559 5.215845 AGAGAGATTTCTAAAGGGAGAGGG 58.784 45.833 0.00 0.00 32.53 4.30
558 560 5.042979 AGAGAGATTTCTAAAGGGAGAGGGA 60.043 44.000 0.00 0.00 32.53 4.20
559 561 5.798419 AGAGATTTCTAAAGGGAGAGGGAT 58.202 41.667 0.00 0.00 0.00 3.85
560 562 6.216541 AGAGATTTCTAAAGGGAGAGGGATT 58.783 40.000 0.00 0.00 0.00 3.01
561 563 7.374271 AGAGATTTCTAAAGGGAGAGGGATTA 58.626 38.462 0.00 0.00 0.00 1.75
562 564 7.512402 AGAGATTTCTAAAGGGAGAGGGATTAG 59.488 40.741 0.00 0.00 0.00 1.73
563 565 7.143052 AGATTTCTAAAGGGAGAGGGATTAGT 58.857 38.462 0.00 0.00 0.00 2.24
564 566 6.561519 TTTCTAAAGGGAGAGGGATTAGTG 57.438 41.667 0.00 0.00 0.00 2.74
565 567 4.557705 TCTAAAGGGAGAGGGATTAGTGG 58.442 47.826 0.00 0.00 0.00 4.00
566 568 2.198334 AAGGGAGAGGGATTAGTGGG 57.802 55.000 0.00 0.00 0.00 4.61
567 569 0.269173 AGGGAGAGGGATTAGTGGGG 59.731 60.000 0.00 0.00 0.00 4.96
568 570 0.267960 GGGAGAGGGATTAGTGGGGA 59.732 60.000 0.00 0.00 0.00 4.81
569 571 1.345112 GGGAGAGGGATTAGTGGGGAA 60.345 57.143 0.00 0.00 0.00 3.97
570 572 2.700540 GGGAGAGGGATTAGTGGGGAAT 60.701 54.545 0.00 0.00 0.00 3.01
571 573 3.056832 GGAGAGGGATTAGTGGGGAATT 58.943 50.000 0.00 0.00 0.00 2.17
572 574 3.181439 GGAGAGGGATTAGTGGGGAATTG 60.181 52.174 0.00 0.00 0.00 2.32
573 575 3.716872 GAGAGGGATTAGTGGGGAATTGA 59.283 47.826 0.00 0.00 0.00 2.57
574 576 4.319515 AGAGGGATTAGTGGGGAATTGAT 58.680 43.478 0.00 0.00 0.00 2.57
575 577 4.105377 AGAGGGATTAGTGGGGAATTGATG 59.895 45.833 0.00 0.00 0.00 3.07
576 578 3.140895 AGGGATTAGTGGGGAATTGATGG 59.859 47.826 0.00 0.00 0.00 3.51
577 579 3.500343 GGATTAGTGGGGAATTGATGGG 58.500 50.000 0.00 0.00 0.00 4.00
578 580 3.140144 GGATTAGTGGGGAATTGATGGGA 59.860 47.826 0.00 0.00 0.00 4.37
579 581 4.202716 GGATTAGTGGGGAATTGATGGGAT 60.203 45.833 0.00 0.00 0.00 3.85
580 582 4.898014 TTAGTGGGGAATTGATGGGATT 57.102 40.909 0.00 0.00 0.00 3.01
581 583 3.036452 AGTGGGGAATTGATGGGATTG 57.964 47.619 0.00 0.00 0.00 2.67
582 584 2.586838 AGTGGGGAATTGATGGGATTGA 59.413 45.455 0.00 0.00 0.00 2.57
583 585 2.961062 GTGGGGAATTGATGGGATTGAG 59.039 50.000 0.00 0.00 0.00 3.02
584 586 2.586838 TGGGGAATTGATGGGATTGAGT 59.413 45.455 0.00 0.00 0.00 3.41
585 587 2.961062 GGGGAATTGATGGGATTGAGTG 59.039 50.000 0.00 0.00 0.00 3.51
586 588 2.961062 GGGAATTGATGGGATTGAGTGG 59.039 50.000 0.00 0.00 0.00 4.00
587 589 3.373001 GGGAATTGATGGGATTGAGTGGA 60.373 47.826 0.00 0.00 0.00 4.02
588 590 3.887716 GGAATTGATGGGATTGAGTGGAG 59.112 47.826 0.00 0.00 0.00 3.86
589 591 3.589951 ATTGATGGGATTGAGTGGAGG 57.410 47.619 0.00 0.00 0.00 4.30
590 592 2.268796 TGATGGGATTGAGTGGAGGA 57.731 50.000 0.00 0.00 0.00 3.71
591 593 2.121948 TGATGGGATTGAGTGGAGGAG 58.878 52.381 0.00 0.00 0.00 3.69
592 594 2.293118 TGATGGGATTGAGTGGAGGAGA 60.293 50.000 0.00 0.00 0.00 3.71
593 595 1.871418 TGGGATTGAGTGGAGGAGAG 58.129 55.000 0.00 0.00 0.00 3.20
594 596 1.127343 GGGATTGAGTGGAGGAGAGG 58.873 60.000 0.00 0.00 0.00 3.69
595 597 1.127343 GGATTGAGTGGAGGAGAGGG 58.873 60.000 0.00 0.00 0.00 4.30
596 598 1.343478 GGATTGAGTGGAGGAGAGGGA 60.343 57.143 0.00 0.00 0.00 4.20
597 599 2.688477 GATTGAGTGGAGGAGAGGGAT 58.312 52.381 0.00 0.00 0.00 3.85
598 600 2.649742 TTGAGTGGAGGAGAGGGATT 57.350 50.000 0.00 0.00 0.00 3.01
599 601 2.166907 TGAGTGGAGGAGAGGGATTC 57.833 55.000 0.00 0.00 0.00 2.52
600 602 1.362584 TGAGTGGAGGAGAGGGATTCA 59.637 52.381 0.00 0.00 0.00 2.57
601 603 1.760029 GAGTGGAGGAGAGGGATTCAC 59.240 57.143 0.00 0.00 0.00 3.18
602 604 0.833949 GTGGAGGAGAGGGATTCACC 59.166 60.000 0.00 0.00 36.86 4.02
617 619 5.205759 GATTCACCCAATCCCATGAAATC 57.794 43.478 0.00 0.00 35.66 2.17
618 620 3.030873 TCACCCAATCCCATGAAATCC 57.969 47.619 0.00 0.00 0.00 3.01
619 621 2.041701 CACCCAATCCCATGAAATCCC 58.958 52.381 0.00 0.00 0.00 3.85
620 622 1.062198 ACCCAATCCCATGAAATCCCC 60.062 52.381 0.00 0.00 0.00 4.81
621 623 1.720781 CCAATCCCATGAAATCCCCC 58.279 55.000 0.00 0.00 0.00 5.40
622 624 1.221265 CCAATCCCATGAAATCCCCCT 59.779 52.381 0.00 0.00 0.00 4.79
623 625 2.601905 CAATCCCATGAAATCCCCCTC 58.398 52.381 0.00 0.00 0.00 4.30
624 626 2.178544 CAATCCCATGAAATCCCCCTCT 59.821 50.000 0.00 0.00 0.00 3.69
625 627 1.522900 TCCCATGAAATCCCCCTCTC 58.477 55.000 0.00 0.00 0.00 3.20
626 628 0.480252 CCCATGAAATCCCCCTCTCC 59.520 60.000 0.00 0.00 0.00 3.71
627 629 1.225373 CCATGAAATCCCCCTCTCCA 58.775 55.000 0.00 0.00 0.00 3.86
628 630 1.133668 CCATGAAATCCCCCTCTCCAC 60.134 57.143 0.00 0.00 0.00 4.02
629 631 1.565759 CATGAAATCCCCCTCTCCACA 59.434 52.381 0.00 0.00 0.00 4.17
630 632 1.753903 TGAAATCCCCCTCTCCACAA 58.246 50.000 0.00 0.00 0.00 3.33
631 633 2.069775 TGAAATCCCCCTCTCCACAAA 58.930 47.619 0.00 0.00 0.00 2.83
632 634 2.654385 TGAAATCCCCCTCTCCACAAAT 59.346 45.455 0.00 0.00 0.00 2.32
633 635 3.291584 GAAATCCCCCTCTCCACAAATC 58.708 50.000 0.00 0.00 0.00 2.17
634 636 2.293598 ATCCCCCTCTCCACAAATCT 57.706 50.000 0.00 0.00 0.00 2.40
635 637 1.584724 TCCCCCTCTCCACAAATCTC 58.415 55.000 0.00 0.00 0.00 2.75
636 638 0.548510 CCCCCTCTCCACAAATCTCC 59.451 60.000 0.00 0.00 0.00 3.71
637 639 0.548510 CCCCTCTCCACAAATCTCCC 59.451 60.000 0.00 0.00 0.00 4.30
638 640 0.548510 CCCTCTCCACAAATCTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
639 641 1.289160 CCTCTCCACAAATCTCCCCA 58.711 55.000 0.00 0.00 0.00 4.96
640 642 1.635487 CCTCTCCACAAATCTCCCCAA 59.365 52.381 0.00 0.00 0.00 4.12
641 643 2.243221 CCTCTCCACAAATCTCCCCAAT 59.757 50.000 0.00 0.00 0.00 3.16
642 644 3.549794 CTCTCCACAAATCTCCCCAATC 58.450 50.000 0.00 0.00 0.00 2.67
643 645 2.242196 TCTCCACAAATCTCCCCAATCC 59.758 50.000 0.00 0.00 0.00 3.01
644 646 1.287739 TCCACAAATCTCCCCAATCCC 59.712 52.381 0.00 0.00 0.00 3.85
645 647 1.689258 CCACAAATCTCCCCAATCCCC 60.689 57.143 0.00 0.00 0.00 4.81
646 648 1.288932 CACAAATCTCCCCAATCCCCT 59.711 52.381 0.00 0.00 0.00 4.79
647 649 2.010699 ACAAATCTCCCCAATCCCCTT 58.989 47.619 0.00 0.00 0.00 3.95
648 650 2.292455 ACAAATCTCCCCAATCCCCTTG 60.292 50.000 0.00 0.00 34.42 3.61
649 651 1.698874 AATCTCCCCAATCCCCTTGT 58.301 50.000 0.00 0.00 32.61 3.16
650 652 2.605825 ATCTCCCCAATCCCCTTGTA 57.394 50.000 0.00 0.00 32.61 2.41
651 653 2.605825 TCTCCCCAATCCCCTTGTAT 57.394 50.000 0.00 0.00 32.61 2.29
652 654 2.135189 TCTCCCCAATCCCCTTGTATG 58.865 52.381 0.00 0.00 32.61 2.39
653 655 2.135189 CTCCCCAATCCCCTTGTATGA 58.865 52.381 0.00 0.00 32.61 2.15
654 656 2.513738 CTCCCCAATCCCCTTGTATGAA 59.486 50.000 0.00 0.00 32.61 2.57
655 657 2.929724 TCCCCAATCCCCTTGTATGAAA 59.070 45.455 0.00 0.00 32.61 2.69
656 658 3.031013 CCCCAATCCCCTTGTATGAAAC 58.969 50.000 0.00 0.00 32.61 2.78
657 659 2.687935 CCCAATCCCCTTGTATGAAACG 59.312 50.000 0.00 0.00 32.61 3.60
658 660 3.616219 CCAATCCCCTTGTATGAAACGA 58.384 45.455 0.00 0.00 32.61 3.85
659 661 3.627577 CCAATCCCCTTGTATGAAACGAG 59.372 47.826 0.00 0.00 39.11 4.18
667 669 3.536956 TGTATGAAACGAGGCCTTAGG 57.463 47.619 6.77 1.63 0.00 2.69
668 670 2.169769 TGTATGAAACGAGGCCTTAGGG 59.830 50.000 6.77 0.00 0.00 3.53
722 724 3.394274 TGGAGAGGTTTGAAGTGGATTGA 59.606 43.478 0.00 0.00 0.00 2.57
802 807 1.201414 CCAATACAACCGAACAAGGCC 59.799 52.381 0.00 0.00 33.69 5.19
804 809 2.556622 CAATACAACCGAACAAGGCCTT 59.443 45.455 13.78 13.78 33.69 4.35
806 811 2.351706 ACAACCGAACAAGGCCTTAA 57.648 45.000 20.00 0.00 33.69 1.85
807 812 2.227194 ACAACCGAACAAGGCCTTAAG 58.773 47.619 20.00 9.74 33.69 1.85
808 813 2.158726 ACAACCGAACAAGGCCTTAAGA 60.159 45.455 20.00 0.00 33.69 2.10
949 2699 1.179814 AGGCAAGTCGAGGAAGACGT 61.180 55.000 0.00 0.00 45.26 4.34
1241 2991 2.280552 GCTACGTGGGAGTGGGACA 61.281 63.158 0.00 0.00 0.00 4.02
1402 3154 0.837691 TGAGGAGATGGCACCACAGT 60.838 55.000 0.00 0.00 0.00 3.55
1414 3166 0.249322 ACCACAGTCGTCCGTCTTTG 60.249 55.000 0.00 0.00 0.00 2.77
1421 3173 0.460722 TCGTCCGTCTTTGTGTTGGA 59.539 50.000 0.00 0.00 0.00 3.53
1478 3230 4.980805 GTCGGCGGCCACTGTGAA 62.981 66.667 20.71 0.00 0.00 3.18
1616 3368 1.143838 CTAGCATGCCACCTGCGTA 59.856 57.895 15.66 0.00 45.60 4.42
1658 3410 2.600729 CCCTGCTCTTCCTGCTGGT 61.601 63.158 9.73 0.00 44.58 4.00
1661 3413 1.677217 CCTGCTCTTCCTGCTGGTTAC 60.677 57.143 9.73 0.00 42.24 2.50
1687 3439 4.306391 TGGGATGGGAATATCAGTGAGAA 58.694 43.478 0.00 0.00 0.00 2.87
1725 3477 4.336433 GGCATGATTGTTGCTGTACTGTAT 59.664 41.667 0.00 0.00 40.03 2.29
1735 3487 6.370442 TGTTGCTGTACTGTATTATTGGTGTC 59.630 38.462 1.46 0.00 0.00 3.67
1796 3549 1.221466 TTCTTGCGCTCTGACCGTTG 61.221 55.000 9.73 0.00 0.00 4.10
1801 3554 1.208358 CGCTCTGACCGTTGACGTA 59.792 57.895 2.63 0.00 37.74 3.57
1805 3558 0.240145 TCTGACCGTTGACGTAGCTG 59.760 55.000 0.00 0.00 37.74 4.24
1985 3771 4.361420 GGCGTCTCTAGAACACCTTATTC 58.639 47.826 0.00 0.00 0.00 1.75
1987 3773 5.038033 GCGTCTCTAGAACACCTTATTCAG 58.962 45.833 0.00 0.00 0.00 3.02
2059 3845 2.280592 GGCGAACAACCGGAGTGT 60.281 61.111 9.46 9.39 0.00 3.55
2064 3850 1.871039 CGAACAACCGGAGTGTTGAAT 59.129 47.619 25.86 8.39 46.77 2.57
2070 3856 6.490566 ACAACCGGAGTGTTGAATAATTAC 57.509 37.500 9.46 0.00 46.77 1.89
2103 3891 4.183916 TCTACTCCCTCCCTTGGAAAAAT 58.816 43.478 0.00 0.00 0.00 1.82
2139 3927 6.216569 TCCAATAGAAGATGTAGATGCGAAC 58.783 40.000 0.00 0.00 0.00 3.95
2149 3937 4.940463 TGTAGATGCGAACATACCTAACC 58.060 43.478 0.00 0.00 36.35 2.85
2163 3951 6.891908 ACATACCTAACCTTTGCATCTTTGAT 59.108 34.615 0.00 0.00 0.00 2.57
2180 3968 2.676748 TGATGGCCAAAAACACCTCTT 58.323 42.857 10.96 0.00 0.00 2.85
2208 3999 8.121305 ACAGATGGTGTAGATGCAAAAATAAA 57.879 30.769 0.00 0.00 37.75 1.40
2234 4033 4.616181 AAAAATTTACATCTCCGCCTCG 57.384 40.909 0.00 0.00 0.00 4.63
2289 4088 2.196742 TTGCATCTCCCCCTACAGAT 57.803 50.000 0.00 0.00 0.00 2.90
2343 4143 1.074566 CTGCCAGTTCCTTTCCCTTCT 59.925 52.381 0.00 0.00 0.00 2.85
2477 4282 4.794439 CCGCCGTCTGCATCGTCA 62.794 66.667 9.82 0.00 41.33 4.35
2515 4320 1.511887 CAATTCACTTTCGGCCGCG 60.512 57.895 23.51 13.93 0.00 6.46
2516 4321 1.669760 AATTCACTTTCGGCCGCGA 60.670 52.632 23.51 8.91 0.00 5.87
2517 4322 1.024579 AATTCACTTTCGGCCGCGAT 61.025 50.000 23.51 2.13 0.00 4.58
2518 4323 1.705337 ATTCACTTTCGGCCGCGATG 61.705 55.000 23.51 15.86 0.00 3.84
2519 4324 3.864686 CACTTTCGGCCGCGATGG 61.865 66.667 23.51 10.92 42.50 3.51
2520 4325 4.388499 ACTTTCGGCCGCGATGGT 62.388 61.111 23.51 11.60 41.21 3.55
2521 4326 3.864686 CTTTCGGCCGCGATGGTG 61.865 66.667 23.51 1.83 41.21 4.17
2522 4327 4.380781 TTTCGGCCGCGATGGTGA 62.381 61.111 23.51 0.00 41.21 4.02
2523 4328 4.812476 TTCGGCCGCGATGGTGAG 62.812 66.667 23.51 0.00 41.21 3.51
2527 4332 4.166011 GCCGCGATGGTGAGCAAC 62.166 66.667 8.23 0.00 41.21 4.17
2528 4333 3.853330 CCGCGATGGTGAGCAACG 61.853 66.667 8.23 9.95 0.00 4.10
2529 4334 2.809174 CGCGATGGTGAGCAACGA 60.809 61.111 18.14 0.00 0.00 3.85
2530 4335 2.167219 CGCGATGGTGAGCAACGAT 61.167 57.895 18.14 0.00 0.00 3.73
2531 4336 1.349627 GCGATGGTGAGCAACGATG 59.650 57.895 18.14 0.00 0.00 3.84
2532 4337 2.009108 CGATGGTGAGCAACGATGG 58.991 57.895 8.64 0.00 0.00 3.51
2533 4338 1.431488 CGATGGTGAGCAACGATGGG 61.431 60.000 8.64 0.00 0.00 4.00
2534 4339 1.077501 ATGGTGAGCAACGATGGGG 60.078 57.895 0.00 0.00 0.00 4.96
2535 4340 1.852157 ATGGTGAGCAACGATGGGGT 61.852 55.000 0.00 0.00 0.00 4.95
2536 4341 1.195442 TGGTGAGCAACGATGGGGTA 61.195 55.000 0.00 0.00 0.00 3.69
2537 4342 0.462047 GGTGAGCAACGATGGGGTAG 60.462 60.000 0.00 0.00 0.00 3.18
2538 4343 1.090052 GTGAGCAACGATGGGGTAGC 61.090 60.000 0.00 0.00 0.00 3.58
2539 4344 1.523938 GAGCAACGATGGGGTAGCC 60.524 63.158 1.07 1.07 0.00 3.93
2540 4345 2.516225 GCAACGATGGGGTAGCCC 60.516 66.667 23.81 23.81 44.51 5.19
2541 4346 3.043999 GCAACGATGGGGTAGCCCT 62.044 63.158 29.64 15.83 44.66 5.19
2542 4347 1.153168 CAACGATGGGGTAGCCCTG 60.153 63.158 29.64 20.84 44.66 4.45
2543 4348 2.375345 AACGATGGGGTAGCCCTGG 61.375 63.158 29.64 19.99 44.66 4.45
2544 4349 4.256180 CGATGGGGTAGCCCTGGC 62.256 72.222 29.64 17.34 44.66 4.85
2545 4350 3.890926 GATGGGGTAGCCCTGGCC 61.891 72.222 29.64 12.67 44.66 5.36
2551 4356 4.162690 GTAGCCCTGGCCGGACTG 62.163 72.222 15.09 8.46 43.17 3.51
2570 4375 3.728373 GGTCAGGGCGGTTGGGAT 61.728 66.667 0.00 0.00 0.00 3.85
2571 4376 2.438434 GTCAGGGCGGTTGGGATG 60.438 66.667 0.00 0.00 0.00 3.51
2572 4377 4.424711 TCAGGGCGGTTGGGATGC 62.425 66.667 0.00 0.00 0.00 3.91
2578 4383 4.444838 CGGTTGGGATGCGGACGA 62.445 66.667 0.00 0.00 0.00 4.20
2579 4384 2.818274 GGTTGGGATGCGGACGAC 60.818 66.667 0.00 0.00 0.00 4.34
2593 4398 3.086298 GGACGACGAAGAAATTCAACG 57.914 47.619 0.00 9.40 0.00 4.10
2594 4399 2.483207 GACGACGAAGAAATTCAACGC 58.517 47.619 0.00 4.80 0.00 4.84
2595 4400 1.193874 ACGACGAAGAAATTCAACGCC 59.806 47.619 0.00 1.28 0.00 5.68
2596 4401 1.463528 CGACGAAGAAATTCAACGCCC 60.464 52.381 10.50 4.27 0.00 6.13
2597 4402 1.533731 GACGAAGAAATTCAACGCCCA 59.466 47.619 10.50 0.00 0.00 5.36
2598 4403 1.265905 ACGAAGAAATTCAACGCCCAC 59.734 47.619 10.50 0.00 0.00 4.61
2599 4404 1.401018 CGAAGAAATTCAACGCCCACC 60.401 52.381 0.00 0.00 0.00 4.61
2600 4405 0.966179 AAGAAATTCAACGCCCACCC 59.034 50.000 0.00 0.00 0.00 4.61
2601 4406 0.178975 AGAAATTCAACGCCCACCCA 60.179 50.000 0.00 0.00 0.00 4.51
2602 4407 0.038618 GAAATTCAACGCCCACCCAC 60.039 55.000 0.00 0.00 0.00 4.61
2603 4408 1.468506 AAATTCAACGCCCACCCACC 61.469 55.000 0.00 0.00 0.00 4.61
2604 4409 2.648613 AATTCAACGCCCACCCACCA 62.649 55.000 0.00 0.00 0.00 4.17
2605 4410 4.572571 TCAACGCCCACCCACCAC 62.573 66.667 0.00 0.00 0.00 4.16
2611 4416 3.507713 CCCACCCACCACCCACTT 61.508 66.667 0.00 0.00 0.00 3.16
2612 4417 2.157452 CCCACCCACCACCCACTTA 61.157 63.158 0.00 0.00 0.00 2.24
2613 4418 1.378762 CCACCCACCACCCACTTAG 59.621 63.158 0.00 0.00 0.00 2.18
2614 4419 1.423794 CCACCCACCACCCACTTAGT 61.424 60.000 0.00 0.00 0.00 2.24
2615 4420 1.354101 CACCCACCACCCACTTAGTA 58.646 55.000 0.00 0.00 0.00 1.82
2616 4421 1.278127 CACCCACCACCCACTTAGTAG 59.722 57.143 0.00 0.00 0.00 2.57
2617 4422 0.252197 CCCACCACCCACTTAGTAGC 59.748 60.000 0.00 0.00 0.00 3.58
2618 4423 0.252197 CCACCACCCACTTAGTAGCC 59.748 60.000 0.00 0.00 0.00 3.93
2619 4424 0.981183 CACCACCCACTTAGTAGCCA 59.019 55.000 0.00 0.00 0.00 4.75
2620 4425 0.981943 ACCACCCACTTAGTAGCCAC 59.018 55.000 0.00 0.00 0.00 5.01
2621 4426 1.276622 CCACCCACTTAGTAGCCACT 58.723 55.000 0.00 0.00 38.91 4.00
2622 4427 1.066143 CCACCCACTTAGTAGCCACTG 60.066 57.143 0.00 0.00 36.14 3.66
2623 4428 1.623811 CACCCACTTAGTAGCCACTGT 59.376 52.381 0.00 0.00 36.14 3.55
2624 4429 1.900486 ACCCACTTAGTAGCCACTGTC 59.100 52.381 0.00 0.00 36.14 3.51
2625 4430 1.135083 CCCACTTAGTAGCCACTGTCG 60.135 57.143 0.00 0.00 36.14 4.35
2626 4431 1.816835 CCACTTAGTAGCCACTGTCGA 59.183 52.381 0.00 0.00 36.14 4.20
2627 4432 2.415625 CCACTTAGTAGCCACTGTCGAC 60.416 54.545 9.11 9.11 36.14 4.20
2628 4433 1.467734 ACTTAGTAGCCACTGTCGACG 59.532 52.381 11.62 8.41 36.14 5.12
2629 4434 1.736126 CTTAGTAGCCACTGTCGACGA 59.264 52.381 11.62 0.00 36.14 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 1.065126 GGAACCAACAGAGGATGAGGG 60.065 57.143 0.00 0.00 33.65 4.30
212 213 8.984764 TCACATAACGCATATTATTGTAGGTTC 58.015 33.333 0.00 0.00 0.00 3.62
215 216 9.759259 CATTCACATAACGCATATTATTGTAGG 57.241 33.333 0.00 0.00 0.00 3.18
226 227 4.009675 ACACTTCCATTCACATAACGCAT 58.990 39.130 0.00 0.00 0.00 4.73
228 229 4.419522 AACACTTCCATTCACATAACGC 57.580 40.909 0.00 0.00 0.00 4.84
235 236 8.807581 CAACTTCTTTTTAACACTTCCATTCAC 58.192 33.333 0.00 0.00 0.00 3.18
247 248 6.806120 ATCGTTGTGCAACTTCTTTTTAAC 57.194 33.333 12.44 0.00 39.08 2.01
287 289 1.960689 GCACCAAACAAGGCCTAAAGA 59.039 47.619 5.16 0.00 0.00 2.52
295 297 0.468029 ACCTCCTGCACCAAACAAGG 60.468 55.000 0.00 0.00 0.00 3.61
300 302 0.758685 CCCAAACCTCCTGCACCAAA 60.759 55.000 0.00 0.00 0.00 3.28
304 306 1.303643 CTCCCCAAACCTCCTGCAC 60.304 63.158 0.00 0.00 0.00 4.57
305 307 0.846427 ATCTCCCCAAACCTCCTGCA 60.846 55.000 0.00 0.00 0.00 4.41
306 308 0.332972 AATCTCCCCAAACCTCCTGC 59.667 55.000 0.00 0.00 0.00 4.85
307 309 2.450476 CAAATCTCCCCAAACCTCCTG 58.550 52.381 0.00 0.00 0.00 3.86
308 310 1.359130 CCAAATCTCCCCAAACCTCCT 59.641 52.381 0.00 0.00 0.00 3.69
309 311 1.357761 TCCAAATCTCCCCAAACCTCC 59.642 52.381 0.00 0.00 0.00 4.30
310 312 2.899303 TCCAAATCTCCCCAAACCTC 57.101 50.000 0.00 0.00 0.00 3.85
311 313 2.225369 CCTTCCAAATCTCCCCAAACCT 60.225 50.000 0.00 0.00 0.00 3.50
312 314 2.179427 CCTTCCAAATCTCCCCAAACC 58.821 52.381 0.00 0.00 0.00 3.27
313 315 2.179427 CCCTTCCAAATCTCCCCAAAC 58.821 52.381 0.00 0.00 0.00 2.93
314 316 2.077803 TCCCTTCCAAATCTCCCCAAA 58.922 47.619 0.00 0.00 0.00 3.28
315 317 1.766951 TCCCTTCCAAATCTCCCCAA 58.233 50.000 0.00 0.00 0.00 4.12
316 318 1.766951 TTCCCTTCCAAATCTCCCCA 58.233 50.000 0.00 0.00 0.00 4.96
317 319 4.509302 GGATATTCCCTTCCAAATCTCCCC 60.509 50.000 0.00 0.00 31.99 4.81
318 320 4.667573 GGATATTCCCTTCCAAATCTCCC 58.332 47.826 0.00 0.00 31.99 4.30
340 342 2.052104 GGGATTTTGGACCCTGCGG 61.052 63.158 0.00 0.00 42.56 5.69
341 343 3.603365 GGGATTTTGGACCCTGCG 58.397 61.111 0.00 0.00 42.56 5.18
345 347 4.079154 AGGATTTCTAGGGATTTTGGACCC 60.079 45.833 0.00 0.00 45.88 4.46
346 348 5.130705 AGGATTTCTAGGGATTTTGGACC 57.869 43.478 0.00 0.00 0.00 4.46
347 349 4.816925 CGAGGATTTCTAGGGATTTTGGAC 59.183 45.833 0.00 0.00 0.00 4.02
348 350 4.473559 ACGAGGATTTCTAGGGATTTTGGA 59.526 41.667 0.00 0.00 0.00 3.53
349 351 4.781934 ACGAGGATTTCTAGGGATTTTGG 58.218 43.478 0.00 0.00 0.00 3.28
350 352 5.428253 TGACGAGGATTTCTAGGGATTTTG 58.572 41.667 0.00 0.00 0.00 2.44
351 353 5.675538 CTGACGAGGATTTCTAGGGATTTT 58.324 41.667 0.00 0.00 0.00 1.82
352 354 4.443598 GCTGACGAGGATTTCTAGGGATTT 60.444 45.833 0.00 0.00 0.00 2.17
353 355 3.070302 GCTGACGAGGATTTCTAGGGATT 59.930 47.826 0.00 0.00 0.00 3.01
354 356 2.630580 GCTGACGAGGATTTCTAGGGAT 59.369 50.000 0.00 0.00 0.00 3.85
355 357 2.032620 GCTGACGAGGATTTCTAGGGA 58.967 52.381 0.00 0.00 0.00 4.20
356 358 1.069358 GGCTGACGAGGATTTCTAGGG 59.931 57.143 0.00 0.00 0.00 3.53
357 359 1.069358 GGGCTGACGAGGATTTCTAGG 59.931 57.143 0.00 0.00 0.00 3.02
358 360 1.757118 TGGGCTGACGAGGATTTCTAG 59.243 52.381 0.00 0.00 0.00 2.43
359 361 1.860641 TGGGCTGACGAGGATTTCTA 58.139 50.000 0.00 0.00 0.00 2.10
360 362 1.207791 ATGGGCTGACGAGGATTTCT 58.792 50.000 0.00 0.00 0.00 2.52
361 363 2.044123 AATGGGCTGACGAGGATTTC 57.956 50.000 0.00 0.00 0.00 2.17
362 364 2.094675 CAAATGGGCTGACGAGGATTT 58.905 47.619 0.00 0.00 0.00 2.17
363 365 1.683011 CCAAATGGGCTGACGAGGATT 60.683 52.381 0.00 0.00 0.00 3.01
364 366 0.107017 CCAAATGGGCTGACGAGGAT 60.107 55.000 0.00 0.00 0.00 3.24
365 367 1.299648 CCAAATGGGCTGACGAGGA 59.700 57.895 0.00 0.00 0.00 3.71
366 368 3.909662 CCAAATGGGCTGACGAGG 58.090 61.111 0.00 0.00 0.00 4.63
375 377 1.052124 ATCCCTGCATGCCAAATGGG 61.052 55.000 16.68 17.48 40.85 4.00
376 378 0.834612 AATCCCTGCATGCCAAATGG 59.165 50.000 16.68 8.39 38.53 3.16
377 379 1.474320 CCAATCCCTGCATGCCAAATG 60.474 52.381 16.68 6.77 0.00 2.32
378 380 0.834612 CCAATCCCTGCATGCCAAAT 59.165 50.000 16.68 0.44 0.00 2.32
379 381 1.266160 CCCAATCCCTGCATGCCAAA 61.266 55.000 16.68 0.00 0.00 3.28
380 382 1.686455 CCCAATCCCTGCATGCCAA 60.686 57.895 16.68 0.00 0.00 4.52
381 383 2.042741 CCCAATCCCTGCATGCCA 60.043 61.111 16.68 2.21 0.00 4.92
382 384 3.543641 GCCCAATCCCTGCATGCC 61.544 66.667 16.68 0.00 0.00 4.40
383 385 3.908081 CGCCCAATCCCTGCATGC 61.908 66.667 11.82 11.82 0.00 4.06
384 386 3.221389 CCGCCCAATCCCTGCATG 61.221 66.667 0.00 0.00 0.00 4.06
385 387 4.528039 CCCGCCCAATCCCTGCAT 62.528 66.667 0.00 0.00 0.00 3.96
401 403 2.597903 GGATCAGAGGGGTTGGCC 59.402 66.667 0.00 0.00 0.00 5.36
402 404 2.597903 GGGATCAGAGGGGTTGGC 59.402 66.667 0.00 0.00 0.00 4.52
403 405 1.619363 TGGGGATCAGAGGGGTTGG 60.619 63.158 0.00 0.00 0.00 3.77
404 406 1.609783 GTGGGGATCAGAGGGGTTG 59.390 63.158 0.00 0.00 0.00 3.77
405 407 1.995626 CGTGGGGATCAGAGGGGTT 60.996 63.158 0.00 0.00 0.00 4.11
406 408 2.365635 CGTGGGGATCAGAGGGGT 60.366 66.667 0.00 0.00 0.00 4.95
407 409 1.056700 ATTCGTGGGGATCAGAGGGG 61.057 60.000 0.00 0.00 0.00 4.79
408 410 0.394565 GATTCGTGGGGATCAGAGGG 59.605 60.000 0.00 0.00 0.00 4.30
409 411 0.394565 GGATTCGTGGGGATCAGAGG 59.605 60.000 0.00 0.00 0.00 3.69
410 412 0.394565 GGGATTCGTGGGGATCAGAG 59.605 60.000 0.00 0.00 0.00 3.35
411 413 0.031111 AGGGATTCGTGGGGATCAGA 60.031 55.000 0.00 0.00 0.00 3.27
412 414 0.394565 GAGGGATTCGTGGGGATCAG 59.605 60.000 0.00 0.00 0.00 2.90
413 415 0.031111 AGAGGGATTCGTGGGGATCA 60.031 55.000 0.00 0.00 0.00 2.92
414 416 0.682292 GAGAGGGATTCGTGGGGATC 59.318 60.000 0.00 0.00 0.00 3.36
415 417 0.031111 TGAGAGGGATTCGTGGGGAT 60.031 55.000 0.00 0.00 0.00 3.85
416 418 0.252513 TTGAGAGGGATTCGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
417 419 0.839946 ATTGAGAGGGATTCGTGGGG 59.160 55.000 0.00 0.00 0.00 4.96
418 420 1.202698 GGATTGAGAGGGATTCGTGGG 60.203 57.143 0.00 0.00 0.00 4.61
419 421 1.486310 TGGATTGAGAGGGATTCGTGG 59.514 52.381 0.00 0.00 0.00 4.94
420 422 2.988010 TGGATTGAGAGGGATTCGTG 57.012 50.000 0.00 0.00 0.00 4.35
421 423 2.774234 ACATGGATTGAGAGGGATTCGT 59.226 45.455 0.00 0.00 0.00 3.85
422 424 3.136763 CACATGGATTGAGAGGGATTCG 58.863 50.000 0.00 0.00 0.00 3.34
423 425 3.117738 ACCACATGGATTGAGAGGGATTC 60.118 47.826 4.53 0.00 38.94 2.52
424 426 2.854967 ACCACATGGATTGAGAGGGATT 59.145 45.455 4.53 0.00 38.94 3.01
425 427 2.496297 ACCACATGGATTGAGAGGGAT 58.504 47.619 4.53 0.00 38.94 3.85
426 428 1.971149 ACCACATGGATTGAGAGGGA 58.029 50.000 4.53 0.00 38.94 4.20
427 429 2.505407 TGTACCACATGGATTGAGAGGG 59.495 50.000 4.53 0.00 38.94 4.30
428 430 3.452264 TCTGTACCACATGGATTGAGAGG 59.548 47.826 4.53 0.00 38.94 3.69
429 431 4.743057 TCTGTACCACATGGATTGAGAG 57.257 45.455 4.53 0.00 38.94 3.20
430 432 5.497464 TTTCTGTACCACATGGATTGAGA 57.503 39.130 4.53 0.00 38.94 3.27
431 433 5.106157 GGTTTTCTGTACCACATGGATTGAG 60.106 44.000 4.53 0.00 38.94 3.02
432 434 4.764823 GGTTTTCTGTACCACATGGATTGA 59.235 41.667 4.53 0.00 38.94 2.57
433 435 4.082245 GGGTTTTCTGTACCACATGGATTG 60.082 45.833 4.53 0.00 37.40 2.67
434 436 4.086457 GGGTTTTCTGTACCACATGGATT 58.914 43.478 4.53 0.00 37.40 3.01
435 437 3.563479 GGGGTTTTCTGTACCACATGGAT 60.563 47.826 4.53 0.00 38.98 3.41
436 438 2.224917 GGGGTTTTCTGTACCACATGGA 60.225 50.000 4.53 0.00 38.98 3.41
437 439 2.167662 GGGGTTTTCTGTACCACATGG 58.832 52.381 0.00 0.00 38.98 3.66
438 440 2.167662 GGGGGTTTTCTGTACCACATG 58.832 52.381 0.00 0.00 41.02 3.21
439 441 1.271707 CGGGGGTTTTCTGTACCACAT 60.272 52.381 0.00 0.00 41.02 3.21
440 442 0.108963 CGGGGGTTTTCTGTACCACA 59.891 55.000 0.00 0.00 41.02 4.17
441 443 0.607217 CCGGGGGTTTTCTGTACCAC 60.607 60.000 0.00 0.00 38.40 4.16
442 444 0.767446 TCCGGGGGTTTTCTGTACCA 60.767 55.000 0.00 0.00 37.40 3.25
443 445 0.035725 CTCCGGGGGTTTTCTGTACC 60.036 60.000 0.00 0.00 34.82 3.34
444 446 0.675837 GCTCCGGGGGTTTTCTGTAC 60.676 60.000 1.90 0.00 0.00 2.90
445 447 1.681076 GCTCCGGGGGTTTTCTGTA 59.319 57.895 1.90 0.00 0.00 2.74
446 448 2.434774 GCTCCGGGGGTTTTCTGT 59.565 61.111 1.90 0.00 0.00 3.41
447 449 2.361230 GGCTCCGGGGGTTTTCTG 60.361 66.667 1.90 0.00 0.00 3.02
448 450 2.856988 TGGCTCCGGGGGTTTTCT 60.857 61.111 1.90 0.00 0.00 2.52
449 451 2.675423 GTGGCTCCGGGGGTTTTC 60.675 66.667 1.90 0.00 0.00 2.29
450 452 4.295199 GGTGGCTCCGGGGGTTTT 62.295 66.667 1.90 0.00 0.00 2.43
458 460 4.410400 GTTCCCTGGGTGGCTCCG 62.410 72.222 13.56 0.00 37.00 4.63
459 461 3.256960 TGTTCCCTGGGTGGCTCC 61.257 66.667 13.56 0.00 0.00 4.70
460 462 2.190488 CTCTGTTCCCTGGGTGGCTC 62.190 65.000 13.56 0.98 0.00 4.70
461 463 2.121963 TCTGTTCCCTGGGTGGCT 60.122 61.111 13.56 0.00 0.00 4.75
462 464 1.779061 TTCTCTGTTCCCTGGGTGGC 61.779 60.000 13.56 4.88 0.00 5.01
463 465 0.326264 CTTCTCTGTTCCCTGGGTGG 59.674 60.000 13.56 1.88 0.00 4.61
464 466 1.277557 CTCTTCTCTGTTCCCTGGGTG 59.722 57.143 13.56 2.22 0.00 4.61
465 467 1.132689 ACTCTTCTCTGTTCCCTGGGT 60.133 52.381 13.56 0.00 0.00 4.51
466 468 1.650528 ACTCTTCTCTGTTCCCTGGG 58.349 55.000 6.33 6.33 0.00 4.45
467 469 2.289945 CCAACTCTTCTCTGTTCCCTGG 60.290 54.545 0.00 0.00 0.00 4.45
468 470 2.634940 TCCAACTCTTCTCTGTTCCCTG 59.365 50.000 0.00 0.00 0.00 4.45
469 471 2.635427 GTCCAACTCTTCTCTGTTCCCT 59.365 50.000 0.00 0.00 0.00 4.20
470 472 2.610727 CGTCCAACTCTTCTCTGTTCCC 60.611 54.545 0.00 0.00 0.00 3.97
471 473 2.678324 CGTCCAACTCTTCTCTGTTCC 58.322 52.381 0.00 0.00 0.00 3.62
472 474 2.062519 GCGTCCAACTCTTCTCTGTTC 58.937 52.381 0.00 0.00 0.00 3.18
473 475 1.689273 AGCGTCCAACTCTTCTCTGTT 59.311 47.619 0.00 0.00 0.00 3.16
474 476 1.333177 AGCGTCCAACTCTTCTCTGT 58.667 50.000 0.00 0.00 0.00 3.41
475 477 2.064762 CAAGCGTCCAACTCTTCTCTG 58.935 52.381 0.00 0.00 0.00 3.35
476 478 1.606737 GCAAGCGTCCAACTCTTCTCT 60.607 52.381 0.00 0.00 0.00 3.10
477 479 0.793250 GCAAGCGTCCAACTCTTCTC 59.207 55.000 0.00 0.00 0.00 2.87
478 480 0.394565 AGCAAGCGTCCAACTCTTCT 59.605 50.000 0.00 0.00 0.00 2.85
479 481 2.080286 TAGCAAGCGTCCAACTCTTC 57.920 50.000 0.00 0.00 0.00 2.87
480 482 2.350522 CATAGCAAGCGTCCAACTCTT 58.649 47.619 0.00 0.00 0.00 2.85
481 483 2.009042 GCATAGCAAGCGTCCAACTCT 61.009 52.381 0.00 0.00 0.00 3.24
482 484 0.375106 GCATAGCAAGCGTCCAACTC 59.625 55.000 0.00 0.00 0.00 3.01
483 485 0.036010 AGCATAGCAAGCGTCCAACT 60.036 50.000 0.00 0.00 37.01 3.16
484 486 0.097674 CAGCATAGCAAGCGTCCAAC 59.902 55.000 0.00 0.00 37.01 3.77
485 487 1.647545 GCAGCATAGCAAGCGTCCAA 61.648 55.000 0.00 0.00 37.01 3.53
486 488 2.108514 GCAGCATAGCAAGCGTCCA 61.109 57.895 0.00 0.00 37.01 4.02
487 489 1.817099 AGCAGCATAGCAAGCGTCC 60.817 57.895 0.00 0.00 37.04 4.79
488 490 1.351012 CAGCAGCATAGCAAGCGTC 59.649 57.895 0.00 0.00 37.04 5.19
489 491 2.758089 GCAGCAGCATAGCAAGCGT 61.758 57.895 0.00 0.00 41.58 5.07
490 492 2.024305 GCAGCAGCATAGCAAGCG 59.976 61.111 0.00 0.00 41.58 4.68
491 493 1.064296 CAGCAGCAGCATAGCAAGC 59.936 57.895 3.17 0.00 45.49 4.01
492 494 1.064296 GCAGCAGCAGCATAGCAAG 59.936 57.895 4.63 0.00 45.49 4.01
493 495 1.378119 AGCAGCAGCAGCATAGCAA 60.378 52.632 12.92 0.00 45.49 3.91
494 496 2.112815 CAGCAGCAGCAGCATAGCA 61.113 57.895 12.92 0.00 45.49 3.49
495 497 2.716244 CAGCAGCAGCAGCATAGC 59.284 61.111 12.92 4.44 45.49 2.97
501 503 0.672711 TTCTACAGCAGCAGCAGCAG 60.673 55.000 12.92 6.60 45.49 4.24
502 504 0.250424 TTTCTACAGCAGCAGCAGCA 60.250 50.000 12.92 0.00 45.49 4.41
503 505 0.447011 CTTTCTACAGCAGCAGCAGC 59.553 55.000 3.17 0.46 45.49 5.25
504 506 1.805869 ACTTTCTACAGCAGCAGCAG 58.194 50.000 3.17 0.00 45.49 4.24
505 507 2.260844 AACTTTCTACAGCAGCAGCA 57.739 45.000 3.17 0.00 45.49 4.41
506 508 4.467735 GTTAAACTTTCTACAGCAGCAGC 58.532 43.478 0.00 0.00 42.56 5.25
507 509 4.515191 TGGTTAAACTTTCTACAGCAGCAG 59.485 41.667 0.00 0.00 0.00 4.24
508 510 4.456535 TGGTTAAACTTTCTACAGCAGCA 58.543 39.130 0.00 0.00 0.00 4.41
509 511 5.432885 TTGGTTAAACTTTCTACAGCAGC 57.567 39.130 0.00 0.00 0.00 5.25
510 512 8.999431 TCTATTTGGTTAAACTTTCTACAGCAG 58.001 33.333 0.00 0.00 0.00 4.24
511 513 8.911918 TCTATTTGGTTAAACTTTCTACAGCA 57.088 30.769 0.00 0.00 0.00 4.41
512 514 9.216117 TCTCTATTTGGTTAAACTTTCTACAGC 57.784 33.333 0.00 0.00 0.00 4.40
526 528 8.836735 TCCCTTTAGAAATCTCTCTATTTGGTT 58.163 33.333 0.00 0.00 32.70 3.67
527 529 8.393959 TCCCTTTAGAAATCTCTCTATTTGGT 57.606 34.615 0.00 0.00 32.70 3.67
528 530 8.709308 TCTCCCTTTAGAAATCTCTCTATTTGG 58.291 37.037 0.00 0.00 32.70 3.28
529 531 9.762933 CTCTCCCTTTAGAAATCTCTCTATTTG 57.237 37.037 0.00 0.00 32.70 2.32
530 532 8.933653 CCTCTCCCTTTAGAAATCTCTCTATTT 58.066 37.037 0.00 0.00 32.70 1.40
531 533 7.512402 CCCTCTCCCTTTAGAAATCTCTCTATT 59.488 40.741 0.00 0.00 32.70 1.73
532 534 7.016296 CCCTCTCCCTTTAGAAATCTCTCTAT 58.984 42.308 0.00 0.00 32.70 1.98
533 535 6.162420 TCCCTCTCCCTTTAGAAATCTCTCTA 59.838 42.308 0.00 0.00 32.70 2.43
534 536 5.042979 TCCCTCTCCCTTTAGAAATCTCTCT 60.043 44.000 0.00 0.00 32.70 3.10
535 537 5.212745 TCCCTCTCCCTTTAGAAATCTCTC 58.787 45.833 0.00 0.00 32.70 3.20
536 538 5.227917 TCCCTCTCCCTTTAGAAATCTCT 57.772 43.478 0.00 0.00 35.52 3.10
537 539 6.508030 AATCCCTCTCCCTTTAGAAATCTC 57.492 41.667 0.00 0.00 0.00 2.75
538 540 7.071824 CACTAATCCCTCTCCCTTTAGAAATCT 59.928 40.741 0.00 0.00 0.00 2.40
539 541 7.220740 CACTAATCCCTCTCCCTTTAGAAATC 58.779 42.308 0.00 0.00 0.00 2.17
540 542 6.101881 CCACTAATCCCTCTCCCTTTAGAAAT 59.898 42.308 0.00 0.00 0.00 2.17
541 543 5.428783 CCACTAATCCCTCTCCCTTTAGAAA 59.571 44.000 0.00 0.00 0.00 2.52
542 544 4.969359 CCACTAATCCCTCTCCCTTTAGAA 59.031 45.833 0.00 0.00 0.00 2.10
543 545 4.557705 CCACTAATCCCTCTCCCTTTAGA 58.442 47.826 0.00 0.00 0.00 2.10
544 546 3.648545 CCCACTAATCCCTCTCCCTTTAG 59.351 52.174 0.00 0.00 0.00 1.85
545 547 3.635267 CCCCACTAATCCCTCTCCCTTTA 60.635 52.174 0.00 0.00 0.00 1.85
546 548 2.493091 CCCACTAATCCCTCTCCCTTT 58.507 52.381 0.00 0.00 0.00 3.11
547 549 1.345526 CCCCACTAATCCCTCTCCCTT 60.346 57.143 0.00 0.00 0.00 3.95
548 550 0.269173 CCCCACTAATCCCTCTCCCT 59.731 60.000 0.00 0.00 0.00 4.20
549 551 0.267960 TCCCCACTAATCCCTCTCCC 59.732 60.000 0.00 0.00 0.00 4.30
550 552 2.191981 TTCCCCACTAATCCCTCTCC 57.808 55.000 0.00 0.00 0.00 3.71
551 553 3.716872 TCAATTCCCCACTAATCCCTCTC 59.283 47.826 0.00 0.00 0.00 3.20
552 554 3.747852 TCAATTCCCCACTAATCCCTCT 58.252 45.455 0.00 0.00 0.00 3.69
553 555 4.401925 CATCAATTCCCCACTAATCCCTC 58.598 47.826 0.00 0.00 0.00 4.30
554 556 3.140895 CCATCAATTCCCCACTAATCCCT 59.859 47.826 0.00 0.00 0.00 4.20
555 557 3.500343 CCATCAATTCCCCACTAATCCC 58.500 50.000 0.00 0.00 0.00 3.85
556 558 3.140144 TCCCATCAATTCCCCACTAATCC 59.860 47.826 0.00 0.00 0.00 3.01
557 559 4.453480 TCCCATCAATTCCCCACTAATC 57.547 45.455 0.00 0.00 0.00 1.75
558 560 5.103129 TCAATCCCATCAATTCCCCACTAAT 60.103 40.000 0.00 0.00 0.00 1.73
559 561 4.231658 TCAATCCCATCAATTCCCCACTAA 59.768 41.667 0.00 0.00 0.00 2.24
560 562 3.790976 TCAATCCCATCAATTCCCCACTA 59.209 43.478 0.00 0.00 0.00 2.74
561 563 2.586838 TCAATCCCATCAATTCCCCACT 59.413 45.455 0.00 0.00 0.00 4.00
562 564 2.961062 CTCAATCCCATCAATTCCCCAC 59.039 50.000 0.00 0.00 0.00 4.61
563 565 2.586838 ACTCAATCCCATCAATTCCCCA 59.413 45.455 0.00 0.00 0.00 4.96
564 566 2.961062 CACTCAATCCCATCAATTCCCC 59.039 50.000 0.00 0.00 0.00 4.81
565 567 2.961062 CCACTCAATCCCATCAATTCCC 59.039 50.000 0.00 0.00 0.00 3.97
566 568 3.887716 CTCCACTCAATCCCATCAATTCC 59.112 47.826 0.00 0.00 0.00 3.01
567 569 3.887716 CCTCCACTCAATCCCATCAATTC 59.112 47.826 0.00 0.00 0.00 2.17
568 570 3.528905 TCCTCCACTCAATCCCATCAATT 59.471 43.478 0.00 0.00 0.00 2.32
569 571 3.125656 TCCTCCACTCAATCCCATCAAT 58.874 45.455 0.00 0.00 0.00 2.57
570 572 2.507058 CTCCTCCACTCAATCCCATCAA 59.493 50.000 0.00 0.00 0.00 2.57
571 573 2.121948 CTCCTCCACTCAATCCCATCA 58.878 52.381 0.00 0.00 0.00 3.07
572 574 2.368221 CTCTCCTCCACTCAATCCCATC 59.632 54.545 0.00 0.00 0.00 3.51
573 575 2.406559 CTCTCCTCCACTCAATCCCAT 58.593 52.381 0.00 0.00 0.00 4.00
574 576 1.623557 CCTCTCCTCCACTCAATCCCA 60.624 57.143 0.00 0.00 0.00 4.37
575 577 1.127343 CCTCTCCTCCACTCAATCCC 58.873 60.000 0.00 0.00 0.00 3.85
576 578 1.127343 CCCTCTCCTCCACTCAATCC 58.873 60.000 0.00 0.00 0.00 3.01
577 579 2.166907 TCCCTCTCCTCCACTCAATC 57.833 55.000 0.00 0.00 0.00 2.67
578 580 2.885388 ATCCCTCTCCTCCACTCAAT 57.115 50.000 0.00 0.00 0.00 2.57
579 581 2.225624 TGAATCCCTCTCCTCCACTCAA 60.226 50.000 0.00 0.00 0.00 3.02
580 582 1.362584 TGAATCCCTCTCCTCCACTCA 59.637 52.381 0.00 0.00 0.00 3.41
581 583 1.760029 GTGAATCCCTCTCCTCCACTC 59.240 57.143 0.00 0.00 0.00 3.51
582 584 1.623834 GGTGAATCCCTCTCCTCCACT 60.624 57.143 0.00 0.00 35.21 4.00
583 585 0.833949 GGTGAATCCCTCTCCTCCAC 59.166 60.000 0.00 0.00 35.21 4.02
584 586 3.324246 GGTGAATCCCTCTCCTCCA 57.676 57.895 0.00 0.00 35.21 3.86
595 597 4.039609 GGATTTCATGGGATTGGGTGAATC 59.960 45.833 0.00 0.00 40.00 2.52
596 598 3.969312 GGATTTCATGGGATTGGGTGAAT 59.031 43.478 0.00 0.00 31.39 2.57
597 599 3.373830 GGATTTCATGGGATTGGGTGAA 58.626 45.455 0.00 0.00 0.00 3.18
598 600 2.359143 GGGATTTCATGGGATTGGGTGA 60.359 50.000 0.00 0.00 0.00 4.02
599 601 2.041701 GGGATTTCATGGGATTGGGTG 58.958 52.381 0.00 0.00 0.00 4.61
600 602 1.062198 GGGGATTTCATGGGATTGGGT 60.062 52.381 0.00 0.00 0.00 4.51
601 603 1.720781 GGGGATTTCATGGGATTGGG 58.279 55.000 0.00 0.00 0.00 4.12
602 604 1.221265 AGGGGGATTTCATGGGATTGG 59.779 52.381 0.00 0.00 0.00 3.16
603 605 2.178544 AGAGGGGGATTTCATGGGATTG 59.821 50.000 0.00 0.00 0.00 2.67
604 606 2.448577 GAGAGGGGGATTTCATGGGATT 59.551 50.000 0.00 0.00 0.00 3.01
605 607 2.068977 GAGAGGGGGATTTCATGGGAT 58.931 52.381 0.00 0.00 0.00 3.85
606 608 1.522900 GAGAGGGGGATTTCATGGGA 58.477 55.000 0.00 0.00 0.00 4.37
607 609 0.480252 GGAGAGGGGGATTTCATGGG 59.520 60.000 0.00 0.00 0.00 4.00
608 610 1.133668 GTGGAGAGGGGGATTTCATGG 60.134 57.143 0.00 0.00 0.00 3.66
609 611 1.565759 TGTGGAGAGGGGGATTTCATG 59.434 52.381 0.00 0.00 0.00 3.07
610 612 1.985622 TGTGGAGAGGGGGATTTCAT 58.014 50.000 0.00 0.00 0.00 2.57
611 613 1.753903 TTGTGGAGAGGGGGATTTCA 58.246 50.000 0.00 0.00 0.00 2.69
612 614 2.899303 TTTGTGGAGAGGGGGATTTC 57.101 50.000 0.00 0.00 0.00 2.17
613 615 2.929043 AGATTTGTGGAGAGGGGGATTT 59.071 45.455 0.00 0.00 0.00 2.17
614 616 2.511637 GAGATTTGTGGAGAGGGGGATT 59.488 50.000 0.00 0.00 0.00 3.01
615 617 2.131023 GAGATTTGTGGAGAGGGGGAT 58.869 52.381 0.00 0.00 0.00 3.85
616 618 1.584724 GAGATTTGTGGAGAGGGGGA 58.415 55.000 0.00 0.00 0.00 4.81
617 619 0.548510 GGAGATTTGTGGAGAGGGGG 59.451 60.000 0.00 0.00 0.00 5.40
618 620 0.548510 GGGAGATTTGTGGAGAGGGG 59.451 60.000 0.00 0.00 0.00 4.79
619 621 0.548510 GGGGAGATTTGTGGAGAGGG 59.451 60.000 0.00 0.00 0.00 4.30
620 622 1.289160 TGGGGAGATTTGTGGAGAGG 58.711 55.000 0.00 0.00 0.00 3.69
621 623 3.549794 GATTGGGGAGATTTGTGGAGAG 58.450 50.000 0.00 0.00 0.00 3.20
622 624 2.242196 GGATTGGGGAGATTTGTGGAGA 59.758 50.000 0.00 0.00 0.00 3.71
623 625 2.659428 GGATTGGGGAGATTTGTGGAG 58.341 52.381 0.00 0.00 0.00 3.86
624 626 1.287739 GGGATTGGGGAGATTTGTGGA 59.712 52.381 0.00 0.00 0.00 4.02
625 627 1.689258 GGGGATTGGGGAGATTTGTGG 60.689 57.143 0.00 0.00 0.00 4.17
626 628 1.288932 AGGGGATTGGGGAGATTTGTG 59.711 52.381 0.00 0.00 0.00 3.33
627 629 1.698874 AGGGGATTGGGGAGATTTGT 58.301 50.000 0.00 0.00 0.00 2.83
628 630 2.292455 ACAAGGGGATTGGGGAGATTTG 60.292 50.000 0.00 0.00 43.68 2.32
629 631 2.010699 ACAAGGGGATTGGGGAGATTT 58.989 47.619 0.00 0.00 43.68 2.17
630 632 1.698874 ACAAGGGGATTGGGGAGATT 58.301 50.000 0.00 0.00 43.68 2.40
631 633 2.605825 TACAAGGGGATTGGGGAGAT 57.394 50.000 0.00 0.00 43.68 2.75
632 634 2.135189 CATACAAGGGGATTGGGGAGA 58.865 52.381 0.00 0.00 43.68 3.71
633 635 2.135189 TCATACAAGGGGATTGGGGAG 58.865 52.381 0.00 0.00 43.68 4.30
634 636 2.295269 TCATACAAGGGGATTGGGGA 57.705 50.000 0.00 0.00 43.68 4.81
635 637 3.031013 GTTTCATACAAGGGGATTGGGG 58.969 50.000 0.00 0.00 43.68 4.96
636 638 2.687935 CGTTTCATACAAGGGGATTGGG 59.312 50.000 0.00 0.00 43.68 4.12
637 639 3.616219 TCGTTTCATACAAGGGGATTGG 58.384 45.455 0.00 0.00 43.68 3.16
638 640 3.627577 CCTCGTTTCATACAAGGGGATTG 59.372 47.826 0.00 0.00 45.01 2.67
639 641 3.886123 CCTCGTTTCATACAAGGGGATT 58.114 45.455 0.00 0.00 0.00 3.01
640 642 2.421529 GCCTCGTTTCATACAAGGGGAT 60.422 50.000 0.00 0.00 0.00 3.85
641 643 1.065709 GCCTCGTTTCATACAAGGGGA 60.066 52.381 0.00 0.00 0.00 4.81
642 644 1.379527 GCCTCGTTTCATACAAGGGG 58.620 55.000 0.00 0.00 0.00 4.79
643 645 1.065418 AGGCCTCGTTTCATACAAGGG 60.065 52.381 0.00 0.00 0.00 3.95
644 646 2.403252 AGGCCTCGTTTCATACAAGG 57.597 50.000 0.00 0.00 0.00 3.61
645 647 3.871594 CCTAAGGCCTCGTTTCATACAAG 59.128 47.826 5.23 0.00 0.00 3.16
646 648 3.370103 CCCTAAGGCCTCGTTTCATACAA 60.370 47.826 5.23 0.00 0.00 2.41
647 649 2.169769 CCCTAAGGCCTCGTTTCATACA 59.830 50.000 5.23 0.00 0.00 2.29
648 650 2.835027 CCCTAAGGCCTCGTTTCATAC 58.165 52.381 5.23 0.00 0.00 2.39
661 663 4.279420 GGATTAAATGAGCAAGCCCTAAGG 59.721 45.833 0.00 0.00 0.00 2.69
662 664 4.279420 GGGATTAAATGAGCAAGCCCTAAG 59.721 45.833 0.45 0.00 45.18 2.18
663 665 4.215109 GGGATTAAATGAGCAAGCCCTAA 58.785 43.478 0.45 0.00 45.18 2.69
664 666 3.832527 GGGATTAAATGAGCAAGCCCTA 58.167 45.455 0.45 0.00 45.18 3.53
665 667 2.670939 GGGATTAAATGAGCAAGCCCT 58.329 47.619 0.45 0.00 45.18 5.19
667 669 4.403752 AGAAAGGGATTAAATGAGCAAGCC 59.596 41.667 0.00 0.00 0.00 4.35
668 670 5.126061 TGAGAAAGGGATTAAATGAGCAAGC 59.874 40.000 0.00 0.00 0.00 4.01
669 671 6.764308 TGAGAAAGGGATTAAATGAGCAAG 57.236 37.500 0.00 0.00 0.00 4.01
670 672 6.153340 CCTTGAGAAAGGGATTAAATGAGCAA 59.847 38.462 0.00 0.00 36.29 3.91
671 673 5.653769 CCTTGAGAAAGGGATTAAATGAGCA 59.346 40.000 0.00 0.00 36.29 4.26
672 674 6.141560 CCTTGAGAAAGGGATTAAATGAGC 57.858 41.667 0.00 0.00 36.29 4.26
722 724 3.803340 TCCTGTAGGTCAAATTCCTCCT 58.197 45.455 0.00 0.00 36.60 3.69
854 863 4.116747 AGAATACACGAGCCTTCTCTTG 57.883 45.455 0.00 0.00 42.38 3.02
922 2645 2.967076 CGACTTGCCTGCGTGTGT 60.967 61.111 0.00 0.00 0.00 3.72
962 2712 1.606668 TGATGTTTTCCAGGTCGTTGC 59.393 47.619 0.00 0.00 0.00 4.17
1204 2954 2.188829 CCGTATCCTCGCGGTACCA 61.189 63.158 13.54 0.00 42.73 3.25
1305 3056 4.754667 GGACCCAACGCGGAGTCC 62.755 72.222 18.81 18.81 43.58 3.85
1383 3135 0.837691 ACTGTGGTGCCATCTCCTCA 60.838 55.000 0.00 0.00 0.00 3.86
1402 3154 0.460722 TCCAACACAAAGACGGACGA 59.539 50.000 0.00 0.00 0.00 4.20
1414 3166 1.641677 GCCGCGATACATCCAACAC 59.358 57.895 8.23 0.00 0.00 3.32
1421 3173 4.640855 CGTCCGGCCGCGATACAT 62.641 66.667 22.85 0.00 0.00 2.29
1440 3192 2.279851 TGACCTTGCACCGTGACG 60.280 61.111 1.65 0.00 0.00 4.35
1565 3317 2.278857 CATCTCCGGAGAACGCGG 60.279 66.667 36.58 19.55 41.36 6.46
1616 3368 4.046938 ACGCTAATTCACTCGTCATCAT 57.953 40.909 0.00 0.00 0.00 2.45
1658 3410 4.172020 TGATATTCCCATCCCATCGGTAA 58.828 43.478 0.00 0.00 0.00 2.85
1661 3413 2.573462 ACTGATATTCCCATCCCATCGG 59.427 50.000 0.00 0.00 0.00 4.18
1687 3439 6.015180 ACAATCATGCCAAGTTCACAATAACT 60.015 34.615 0.00 0.00 41.46 2.24
1725 3477 3.586470 ACCACAACCAGACACCAATAA 57.414 42.857 0.00 0.00 0.00 1.40
1735 3487 5.163353 ACCAGGAATTAAAAACCACAACCAG 60.163 40.000 0.00 0.00 0.00 4.00
1796 3549 2.586258 ACATGATGGTCAGCTACGTC 57.414 50.000 0.00 0.00 0.00 4.34
1801 3554 4.655963 ACAAAACTACATGATGGTCAGCT 58.344 39.130 0.00 0.00 0.00 4.24
1805 3558 6.149633 GGAACAACAAAACTACATGATGGTC 58.850 40.000 0.00 0.00 35.88 4.02
1985 3771 2.753452 TCTACTTTCTCCACGCTACCTG 59.247 50.000 0.00 0.00 0.00 4.00
1987 3773 3.442977 TCTTCTACTTTCTCCACGCTACC 59.557 47.826 0.00 0.00 0.00 3.18
2064 3850 9.725206 AGGGAGTAGAAGTAAGGATTGTAATTA 57.275 33.333 0.00 0.00 0.00 1.40
2070 3856 4.345547 GGGAGGGAGTAGAAGTAAGGATTG 59.654 50.000 0.00 0.00 0.00 2.67
2103 3891 9.319060 ACATCTTCTATTGGAGATGCTCTTATA 57.681 33.333 21.24 0.00 41.11 0.98
2139 3927 6.757897 TCAAAGATGCAAAGGTTAGGTATG 57.242 37.500 0.00 0.00 0.00 2.39
2149 3937 3.322211 TTGGCCATCAAAGATGCAAAG 57.678 42.857 6.09 0.00 31.46 2.77
2163 3951 2.151502 TGAAGAGGTGTTTTTGGCCA 57.848 45.000 0.00 0.00 0.00 5.36
2180 3968 3.979101 TGCATCTACACCATCTGTTGA 57.021 42.857 0.00 0.00 38.72 3.18
2214 4005 2.354821 GCGAGGCGGAGATGTAAATTTT 59.645 45.455 0.00 0.00 0.00 1.82
2217 4008 3.290776 GCGAGGCGGAGATGTAAAT 57.709 52.632 0.00 0.00 0.00 1.40
2218 4009 4.827481 GCGAGGCGGAGATGTAAA 57.173 55.556 0.00 0.00 0.00 2.01
2234 4033 3.370061 GGTGTTGTAGTTTACATCTCCGC 59.630 47.826 3.87 0.00 38.68 5.54
2273 4072 7.739995 TTTATATCATCTGTAGGGGGAGATG 57.260 40.000 0.00 0.00 44.76 2.90
2280 4079 5.924254 TCGCGTTTTTATATCATCTGTAGGG 59.076 40.000 5.77 0.00 0.00 3.53
2289 4088 1.593933 GGGCGTCGCGTTTTTATATCA 59.406 47.619 11.75 0.00 0.00 2.15
2466 4271 4.819761 GCGGGCTGACGATGCAGA 62.820 66.667 0.00 0.00 38.14 4.26
2492 4297 1.613255 GGCCGAAAGTGAATTGGAGGA 60.613 52.381 0.00 0.00 0.00 3.71
2495 4300 1.582610 GCGGCCGAAAGTGAATTGGA 61.583 55.000 33.48 0.00 0.00 3.53
2498 4303 1.669760 TCGCGGCCGAAAGTGAATT 60.670 52.632 33.48 0.00 41.17 2.17
2515 4320 1.097547 CCCCATCGTTGCTCACCATC 61.098 60.000 0.00 0.00 0.00 3.51
2516 4321 1.077501 CCCCATCGTTGCTCACCAT 60.078 57.895 0.00 0.00 0.00 3.55
2517 4322 1.195442 TACCCCATCGTTGCTCACCA 61.195 55.000 0.00 0.00 0.00 4.17
2518 4323 0.462047 CTACCCCATCGTTGCTCACC 60.462 60.000 0.00 0.00 0.00 4.02
2519 4324 1.090052 GCTACCCCATCGTTGCTCAC 61.090 60.000 0.00 0.00 32.64 3.51
2520 4325 1.220749 GCTACCCCATCGTTGCTCA 59.779 57.895 0.00 0.00 32.64 4.26
2521 4326 1.523938 GGCTACCCCATCGTTGCTC 60.524 63.158 0.00 0.00 35.25 4.26
2522 4327 2.590092 GGCTACCCCATCGTTGCT 59.410 61.111 0.00 0.00 35.25 3.91
2553 4358 3.728373 ATCCCAACCGCCCTGACC 61.728 66.667 0.00 0.00 0.00 4.02
2554 4359 2.438434 CATCCCAACCGCCCTGAC 60.438 66.667 0.00 0.00 0.00 3.51
2555 4360 4.424711 GCATCCCAACCGCCCTGA 62.425 66.667 0.00 0.00 0.00 3.86
2561 4366 4.444838 TCGTCCGCATCCCAACCG 62.445 66.667 0.00 0.00 0.00 4.44
2562 4367 2.818274 GTCGTCCGCATCCCAACC 60.818 66.667 0.00 0.00 0.00 3.77
2563 4368 3.186047 CGTCGTCCGCATCCCAAC 61.186 66.667 0.00 0.00 0.00 3.77
2564 4369 2.829043 CTTCGTCGTCCGCATCCCAA 62.829 60.000 0.00 0.00 36.19 4.12
2565 4370 3.350909 CTTCGTCGTCCGCATCCCA 62.351 63.158 0.00 0.00 36.19 4.37
2566 4371 2.552585 TTCTTCGTCGTCCGCATCCC 62.553 60.000 0.00 0.00 36.19 3.85
2567 4372 0.734942 TTTCTTCGTCGTCCGCATCC 60.735 55.000 0.00 0.00 36.19 3.51
2568 4373 1.278238 ATTTCTTCGTCGTCCGCATC 58.722 50.000 0.00 0.00 36.19 3.91
2569 4374 1.659098 GAATTTCTTCGTCGTCCGCAT 59.341 47.619 0.00 0.00 36.19 4.73
2570 4375 1.065358 GAATTTCTTCGTCGTCCGCA 58.935 50.000 0.00 0.00 36.19 5.69
2571 4376 1.065358 TGAATTTCTTCGTCGTCCGC 58.935 50.000 0.00 0.00 36.19 5.54
2572 4377 2.470140 CGTTGAATTTCTTCGTCGTCCG 60.470 50.000 0.00 0.00 33.86 4.79
2573 4378 2.720891 GCGTTGAATTTCTTCGTCGTCC 60.721 50.000 12.44 0.00 34.71 4.79
2574 4379 2.483207 GCGTTGAATTTCTTCGTCGTC 58.517 47.619 12.44 0.00 34.71 4.20
2575 4380 1.193874 GGCGTTGAATTTCTTCGTCGT 59.806 47.619 12.44 0.00 34.71 4.34
2576 4381 1.463528 GGGCGTTGAATTTCTTCGTCG 60.464 52.381 12.44 0.00 33.86 5.12
2577 4382 1.533731 TGGGCGTTGAATTTCTTCGTC 59.466 47.619 12.44 10.73 33.86 4.20
2578 4383 1.265905 GTGGGCGTTGAATTTCTTCGT 59.734 47.619 12.44 0.00 33.86 3.85
2579 4384 1.401018 GGTGGGCGTTGAATTTCTTCG 60.401 52.381 0.00 4.12 33.86 3.79
2580 4385 1.067846 GGGTGGGCGTTGAATTTCTTC 60.068 52.381 0.00 0.00 0.00 2.87
2581 4386 0.966179 GGGTGGGCGTTGAATTTCTT 59.034 50.000 0.00 0.00 0.00 2.52
2582 4387 0.178975 TGGGTGGGCGTTGAATTTCT 60.179 50.000 0.00 0.00 0.00 2.52
2583 4388 0.038618 GTGGGTGGGCGTTGAATTTC 60.039 55.000 0.00 0.00 0.00 2.17
2584 4389 1.468506 GGTGGGTGGGCGTTGAATTT 61.469 55.000 0.00 0.00 0.00 1.82
2585 4390 1.906333 GGTGGGTGGGCGTTGAATT 60.906 57.895 0.00 0.00 0.00 2.17
2586 4391 2.282887 GGTGGGTGGGCGTTGAAT 60.283 61.111 0.00 0.00 0.00 2.57
2587 4392 3.810188 TGGTGGGTGGGCGTTGAA 61.810 61.111 0.00 0.00 0.00 2.69
2588 4393 4.572571 GTGGTGGGTGGGCGTTGA 62.573 66.667 0.00 0.00 0.00 3.18
2594 4399 2.137177 CTAAGTGGGTGGTGGGTGGG 62.137 65.000 0.00 0.00 0.00 4.61
2595 4400 1.378762 CTAAGTGGGTGGTGGGTGG 59.621 63.158 0.00 0.00 0.00 4.61
2596 4401 1.278127 CTACTAAGTGGGTGGTGGGTG 59.722 57.143 0.00 0.00 0.00 4.61
2597 4402 1.652947 CTACTAAGTGGGTGGTGGGT 58.347 55.000 0.00 0.00 0.00 4.51
2598 4403 0.252197 GCTACTAAGTGGGTGGTGGG 59.748 60.000 0.00 0.00 0.00 4.61
2599 4404 0.252197 GGCTACTAAGTGGGTGGTGG 59.748 60.000 0.00 0.00 0.00 4.61
2600 4405 0.981183 TGGCTACTAAGTGGGTGGTG 59.019 55.000 0.00 0.00 0.00 4.17
2601 4406 0.981943 GTGGCTACTAAGTGGGTGGT 59.018 55.000 0.00 0.00 0.00 4.16
2602 4407 1.066143 CAGTGGCTACTAAGTGGGTGG 60.066 57.143 0.95 0.00 34.74 4.61
2603 4408 1.623811 ACAGTGGCTACTAAGTGGGTG 59.376 52.381 0.95 0.00 34.74 4.61
2604 4409 1.900486 GACAGTGGCTACTAAGTGGGT 59.100 52.381 0.95 0.00 34.74 4.51
2605 4410 1.135083 CGACAGTGGCTACTAAGTGGG 60.135 57.143 0.95 0.00 34.74 4.61
2606 4411 1.816835 TCGACAGTGGCTACTAAGTGG 59.183 52.381 0.95 0.00 34.74 4.00
2607 4412 2.728225 CGTCGACAGTGGCTACTAAGTG 60.728 54.545 17.16 0.00 34.74 3.16
2608 4413 1.467734 CGTCGACAGTGGCTACTAAGT 59.532 52.381 17.16 0.00 34.74 2.24
2609 4414 1.736126 TCGTCGACAGTGGCTACTAAG 59.264 52.381 17.16 0.00 34.74 2.18
2610 4415 1.812235 TCGTCGACAGTGGCTACTAA 58.188 50.000 17.16 0.00 34.74 2.24
2611 4416 3.538379 TCGTCGACAGTGGCTACTA 57.462 52.632 17.16 0.00 34.74 1.82
2612 4417 4.391869 TCGTCGACAGTGGCTACT 57.608 55.556 17.16 0.00 37.75 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.