Multiple sequence alignment - TraesCS7B01G121500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G121500 chr7B 100.000 8046 0 0 1 8046 141849604 141857649 0.000000e+00 14859
1 TraesCS7B01G121500 chr7B 85.102 886 121 7 7169 8043 125857412 125858297 0.000000e+00 894
2 TraesCS7B01G121500 chr7B 84.615 884 124 9 7170 8043 124009588 124010469 0.000000e+00 869
3 TraesCS7B01G121500 chr7B 83.991 887 126 14 7169 8043 124006586 124007468 0.000000e+00 837
4 TraesCS7B01G121500 chr7B 92.157 255 18 2 1 254 15762487 15762234 7.680000e-95 359
5 TraesCS7B01G121500 chr7B 92.653 245 16 2 1 243 238608184 238608428 1.280000e-92 351
6 TraesCS7B01G121500 chr7B 91.051 257 19 3 1 254 446078940 446079195 2.150000e-90 344
7 TraesCS7B01G121500 chr7D 96.274 5663 166 21 1521 7156 176172889 176167245 0.000000e+00 9247
8 TraesCS7B01G121500 chr7D 93.390 817 37 6 734 1533 176173779 176172963 0.000000e+00 1194
9 TraesCS7B01G121500 chr7D 92.308 78 5 1 396 472 176174043 176173966 8.540000e-20 110
10 TraesCS7B01G121500 chr7A 95.613 3693 127 18 3472 7156 178291825 178295490 0.000000e+00 5890
11 TraesCS7B01G121500 chr7A 90.499 2284 130 42 393 2612 178288830 178291090 0.000000e+00 2935
12 TraesCS7B01G121500 chr7A 95.879 728 27 3 2690 3416 178291085 178291810 0.000000e+00 1175
13 TraesCS7B01G121500 chr7A 79.963 539 57 29 246 746 178288653 178289178 4.620000e-92 350
14 TraesCS7B01G121500 chr2B 96.368 881 25 3 7170 8043 258670213 258671093 0.000000e+00 1443
15 TraesCS7B01G121500 chr2B 92.801 889 52 6 7170 8046 486789325 486788437 0.000000e+00 1277
16 TraesCS7B01G121500 chr2B 92.339 248 18 1 1 247 178633510 178633263 1.280000e-92 351
17 TraesCS7B01G121500 chr3B 85.520 884 116 8 7170 8043 615881341 615882222 0.000000e+00 913
18 TraesCS7B01G121500 chr3B 93.359 256 14 3 1 254 436300050 436299796 7.620000e-100 375
19 TraesCS7B01G121500 chr3B 92.157 255 17 3 2 254 428144009 428143756 2.760000e-94 357
20 TraesCS7B01G121500 chr3B 91.440 257 19 2 1 254 178317354 178317610 4.620000e-92 350
21 TraesCS7B01G121500 chr6B 85.277 883 119 9 7170 8043 93387926 93388806 0.000000e+00 900
22 TraesCS7B01G121500 chr6B 84.606 864 116 14 7191 8043 123209889 123210746 0.000000e+00 843
23 TraesCS7B01G121500 chr6B 95.402 87 4 0 2609 2695 233032498 233032412 1.090000e-28 139
24 TraesCS7B01G121500 chr1B 83.710 884 134 7 7170 8043 454623975 454624858 0.000000e+00 826
25 TraesCS7B01G121500 chr1B 91.765 255 19 2 1 254 454799851 454800104 3.570000e-93 353
26 TraesCS7B01G121500 chr1B 94.505 91 5 0 2605 2695 527834329 527834239 3.030000e-29 141
27 TraesCS7B01G121500 chr1A 80.000 500 72 18 5135 5622 549048813 549048330 2.150000e-90 344
28 TraesCS7B01G121500 chr1A 95.506 89 4 0 2607 2695 527084017 527083929 8.420000e-30 143
29 TraesCS7B01G121500 chr4B 91.016 256 20 3 1 254 379563648 379563394 7.730000e-90 342
30 TraesCS7B01G121500 chr3D 97.753 89 2 0 2606 2694 302930474 302930386 3.890000e-33 154
31 TraesCS7B01G121500 chr2A 96.591 88 3 0 2607 2694 632952907 632952994 6.510000e-31 147
32 TraesCS7B01G121500 chr2A 94.565 92 5 0 2606 2697 703709097 703709006 8.420000e-30 143
33 TraesCS7B01G121500 chr6A 91.837 98 6 2 2606 2703 581267187 581267282 1.410000e-27 135
34 TraesCS7B01G121500 chr6A 91.837 98 6 2 2606 2703 581310424 581310519 1.410000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G121500 chr7B 141849604 141857649 8045 False 14859.0 14859 100.000000 1 8046 1 chr7B.!!$F2 8045
1 TraesCS7B01G121500 chr7B 125857412 125858297 885 False 894.0 894 85.102000 7169 8043 1 chr7B.!!$F1 874
2 TraesCS7B01G121500 chr7B 124006586 124010469 3883 False 853.0 869 84.303000 7169 8043 2 chr7B.!!$F5 874
3 TraesCS7B01G121500 chr7D 176167245 176174043 6798 True 3517.0 9247 93.990667 396 7156 3 chr7D.!!$R1 6760
4 TraesCS7B01G121500 chr7A 178288653 178295490 6837 False 2587.5 5890 90.488500 246 7156 4 chr7A.!!$F1 6910
5 TraesCS7B01G121500 chr2B 258670213 258671093 880 False 1443.0 1443 96.368000 7170 8043 1 chr2B.!!$F1 873
6 TraesCS7B01G121500 chr2B 486788437 486789325 888 True 1277.0 1277 92.801000 7170 8046 1 chr2B.!!$R2 876
7 TraesCS7B01G121500 chr3B 615881341 615882222 881 False 913.0 913 85.520000 7170 8043 1 chr3B.!!$F2 873
8 TraesCS7B01G121500 chr6B 93387926 93388806 880 False 900.0 900 85.277000 7170 8043 1 chr6B.!!$F1 873
9 TraesCS7B01G121500 chr6B 123209889 123210746 857 False 843.0 843 84.606000 7191 8043 1 chr6B.!!$F2 852
10 TraesCS7B01G121500 chr1B 454623975 454624858 883 False 826.0 826 83.710000 7170 8043 1 chr1B.!!$F1 873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.034896 AGTTGTGGGTGGTGATCGTC 59.965 55.000 0.00 0.00 0.00 4.20 F
240 241 0.250124 GTTGTGGGTGGTGATCGTCA 60.250 55.000 0.00 0.00 0.00 4.35 F
1345 1421 0.428102 TCCAGGGGATTAAGGGGGAA 59.572 55.000 0.00 0.00 0.00 3.97 F
1346 1422 1.013322 TCCAGGGGATTAAGGGGGAAT 59.987 52.381 0.00 0.00 0.00 3.01 F
2303 2485 0.951558 ACATCCTGTGAAAACGGCAC 59.048 50.000 0.00 0.00 36.81 5.01 F
3622 3816 1.001406 CTCAGGAGAACGGCTGAAAGT 59.999 52.381 0.00 0.00 35.30 2.66 F
4236 4432 0.318120 AACTGCAAATGGCCCTTTCG 59.682 50.000 2.61 1.48 43.89 3.46 F
4500 4696 0.892814 AAGTGGAAGCTGCTTCTGCC 60.893 55.000 33.75 22.64 40.07 4.85 F
5426 5629 1.298014 GGCACCACTAGAGCAGCTT 59.702 57.895 0.00 0.00 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1128 1204 0.725784 CAGCGAAAACACACGATGGC 60.726 55.000 0.00 0.00 41.18 4.40 R
1893 2073 0.822532 CTCCCATTCCATGCCAGCTC 60.823 60.000 0.00 0.00 0.00 4.09 R
2251 2433 0.322277 CTTGTGACCAGGCTGCAGAT 60.322 55.000 20.43 1.05 0.00 2.90 R
3285 3478 1.072173 AGTGCCACTGATAGTGCACAA 59.928 47.619 21.04 0.21 46.13 3.33 R
4236 4432 0.813821 GAATTTCAGCTCCAGTGGCC 59.186 55.000 3.51 0.00 0.00 5.36 R
4500 4696 0.667993 TCAAAGGCTTCCTGCAAACG 59.332 50.000 0.00 0.00 45.15 3.60 R
5758 5967 1.537889 ACCCTCCGTCAACCATCCA 60.538 57.895 0.00 0.00 0.00 3.41 R
5799 6008 2.229792 CTTCTGTTACCTTTGCAGGCA 58.770 47.619 0.00 0.00 45.56 4.75 R
7161 7371 0.107312 AGAGAGCGCCATTGAATGCT 60.107 50.000 2.29 0.00 41.11 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.120182 GATTCGAGAAGACGTTCGACT 57.880 47.619 9.44 4.88 44.58 4.18
21 22 4.256140 GATTCGAGAAGACGTTCGACTA 57.744 45.455 9.44 0.00 44.58 2.59
22 23 4.835344 GATTCGAGAAGACGTTCGACTAT 58.165 43.478 9.44 2.41 44.58 2.12
23 24 5.972018 GATTCGAGAAGACGTTCGACTATA 58.028 41.667 9.44 0.00 44.58 1.31
24 25 5.980698 TTCGAGAAGACGTTCGACTATAT 57.019 39.130 9.44 0.00 44.58 0.86
25 26 5.573296 TCGAGAAGACGTTCGACTATATC 57.427 43.478 5.99 0.00 40.55 1.63
26 27 5.045872 TCGAGAAGACGTTCGACTATATCA 58.954 41.667 5.99 0.00 40.55 2.15
27 28 5.521372 TCGAGAAGACGTTCGACTATATCAA 59.479 40.000 5.99 0.00 40.55 2.57
28 29 5.616383 CGAGAAGACGTTCGACTATATCAAC 59.384 44.000 1.14 0.00 39.06 3.18
29 30 5.819059 AGAAGACGTTCGACTATATCAACC 58.181 41.667 0.00 0.00 37.79 3.77
30 31 4.206698 AGACGTTCGACTATATCAACCG 57.793 45.455 0.00 0.00 0.00 4.44
31 32 2.718027 GACGTTCGACTATATCAACCGC 59.282 50.000 0.00 0.00 0.00 5.68
32 33 1.707117 CGTTCGACTATATCAACCGCG 59.293 52.381 0.00 0.00 0.00 6.46
33 34 2.724349 GTTCGACTATATCAACCGCGT 58.276 47.619 4.92 0.00 0.00 6.01
34 35 3.111098 GTTCGACTATATCAACCGCGTT 58.889 45.455 4.92 0.00 0.00 4.84
35 36 4.282068 GTTCGACTATATCAACCGCGTTA 58.718 43.478 4.92 0.00 0.00 3.18
36 37 4.550577 TCGACTATATCAACCGCGTTAA 57.449 40.909 4.92 0.00 0.00 2.01
37 38 4.530388 TCGACTATATCAACCGCGTTAAG 58.470 43.478 4.92 0.00 0.00 1.85
38 39 4.035558 TCGACTATATCAACCGCGTTAAGT 59.964 41.667 4.92 0.00 0.00 2.24
39 40 4.736793 CGACTATATCAACCGCGTTAAGTT 59.263 41.667 4.92 0.00 0.00 2.66
40 41 5.909054 CGACTATATCAACCGCGTTAAGTTA 59.091 40.000 4.92 0.00 0.00 2.24
41 42 6.414694 CGACTATATCAACCGCGTTAAGTTAA 59.585 38.462 4.92 0.00 0.00 2.01
42 43 7.455331 ACTATATCAACCGCGTTAAGTTAAC 57.545 36.000 14.65 14.65 35.37 2.01
55 56 3.872560 AAGTTAACGCTTCCACTTTCG 57.127 42.857 0.00 0.00 0.00 3.46
56 57 2.140717 AGTTAACGCTTCCACTTTCGG 58.859 47.619 0.00 0.00 0.00 4.30
57 58 1.869132 GTTAACGCTTCCACTTTCGGT 59.131 47.619 0.00 0.00 0.00 4.69
58 59 1.787012 TAACGCTTCCACTTTCGGTC 58.213 50.000 0.00 0.00 0.00 4.79
59 60 0.106149 AACGCTTCCACTTTCGGTCT 59.894 50.000 0.00 0.00 0.00 3.85
60 61 0.963962 ACGCTTCCACTTTCGGTCTA 59.036 50.000 0.00 0.00 0.00 2.59
61 62 1.549170 ACGCTTCCACTTTCGGTCTAT 59.451 47.619 0.00 0.00 0.00 1.98
62 63 1.927174 CGCTTCCACTTTCGGTCTATG 59.073 52.381 0.00 0.00 0.00 2.23
63 64 2.416836 CGCTTCCACTTTCGGTCTATGA 60.417 50.000 0.00 0.00 0.00 2.15
64 65 3.190874 GCTTCCACTTTCGGTCTATGAG 58.809 50.000 0.00 0.00 0.00 2.90
65 66 3.786635 CTTCCACTTTCGGTCTATGAGG 58.213 50.000 0.00 0.00 0.00 3.86
66 67 2.108168 TCCACTTTCGGTCTATGAGGG 58.892 52.381 0.00 0.00 0.00 4.30
67 68 1.831736 CCACTTTCGGTCTATGAGGGT 59.168 52.381 0.00 0.00 0.00 4.34
68 69 3.028850 CCACTTTCGGTCTATGAGGGTA 58.971 50.000 0.00 0.00 0.00 3.69
69 70 3.181478 CCACTTTCGGTCTATGAGGGTAC 60.181 52.174 0.00 0.00 0.00 3.34
70 71 3.446161 CACTTTCGGTCTATGAGGGTACA 59.554 47.826 0.00 0.00 0.00 2.90
71 72 4.099573 CACTTTCGGTCTATGAGGGTACAT 59.900 45.833 0.00 0.00 0.00 2.29
72 73 4.099573 ACTTTCGGTCTATGAGGGTACATG 59.900 45.833 0.00 0.00 0.00 3.21
73 74 2.594131 TCGGTCTATGAGGGTACATGG 58.406 52.381 0.00 0.00 0.00 3.66
74 75 2.176148 TCGGTCTATGAGGGTACATGGA 59.824 50.000 0.00 0.00 35.89 3.41
78 79 3.989056 TCTATGAGGGTACATGGACACA 58.011 45.455 14.19 8.61 33.95 3.72
79 80 3.704566 TCTATGAGGGTACATGGACACAC 59.295 47.826 14.19 7.00 33.95 3.82
80 81 2.024176 TGAGGGTACATGGACACACT 57.976 50.000 14.19 5.94 0.00 3.55
81 82 1.899814 TGAGGGTACATGGACACACTC 59.100 52.381 14.19 15.21 44.03 3.51
82 83 2.180276 GAGGGTACATGGACACACTCT 58.820 52.381 14.19 0.00 41.18 3.24
83 84 2.567615 GAGGGTACATGGACACACTCTT 59.432 50.000 14.19 0.00 41.18 2.85
84 85 2.567615 AGGGTACATGGACACACTCTTC 59.432 50.000 14.19 0.00 0.00 2.87
85 86 2.354805 GGGTACATGGACACACTCTTCC 60.355 54.545 10.99 0.00 0.00 3.46
86 87 2.567615 GGTACATGGACACACTCTTCCT 59.432 50.000 10.99 0.00 32.55 3.36
87 88 3.008049 GGTACATGGACACACTCTTCCTT 59.992 47.826 10.99 0.00 32.55 3.36
88 89 3.409026 ACATGGACACACTCTTCCTTC 57.591 47.619 0.00 0.00 32.55 3.46
89 90 2.975489 ACATGGACACACTCTTCCTTCT 59.025 45.455 0.00 0.00 32.55 2.85
90 91 3.007398 ACATGGACACACTCTTCCTTCTC 59.993 47.826 0.00 0.00 32.55 2.87
91 92 1.613925 TGGACACACTCTTCCTTCTCG 59.386 52.381 0.00 0.00 32.55 4.04
92 93 1.614413 GGACACACTCTTCCTTCTCGT 59.386 52.381 0.00 0.00 0.00 4.18
93 94 2.036089 GGACACACTCTTCCTTCTCGTT 59.964 50.000 0.00 0.00 0.00 3.85
94 95 3.053455 GACACACTCTTCCTTCTCGTTG 58.947 50.000 0.00 0.00 0.00 4.10
95 96 1.795286 CACACTCTTCCTTCTCGTTGC 59.205 52.381 0.00 0.00 0.00 4.17
96 97 1.689273 ACACTCTTCCTTCTCGTTGCT 59.311 47.619 0.00 0.00 0.00 3.91
97 98 2.891580 ACACTCTTCCTTCTCGTTGCTA 59.108 45.455 0.00 0.00 0.00 3.49
98 99 3.511934 ACACTCTTCCTTCTCGTTGCTAT 59.488 43.478 0.00 0.00 0.00 2.97
99 100 3.862267 CACTCTTCCTTCTCGTTGCTATG 59.138 47.826 0.00 0.00 0.00 2.23
100 101 2.863137 CTCTTCCTTCTCGTTGCTATGC 59.137 50.000 0.00 0.00 0.00 3.14
101 102 2.233676 TCTTCCTTCTCGTTGCTATGCA 59.766 45.455 0.00 0.00 36.47 3.96
102 103 2.988010 TCCTTCTCGTTGCTATGCAT 57.012 45.000 3.79 3.79 38.76 3.96
103 104 2.826428 TCCTTCTCGTTGCTATGCATC 58.174 47.619 0.19 0.00 38.76 3.91
104 105 2.432146 TCCTTCTCGTTGCTATGCATCT 59.568 45.455 0.19 0.00 38.76 2.90
105 106 2.799412 CCTTCTCGTTGCTATGCATCTC 59.201 50.000 0.19 0.00 38.76 2.75
106 107 2.515926 TCTCGTTGCTATGCATCTCC 57.484 50.000 0.19 0.00 38.76 3.71
107 108 2.034878 TCTCGTTGCTATGCATCTCCT 58.965 47.619 0.19 0.00 38.76 3.69
108 109 3.222603 TCTCGTTGCTATGCATCTCCTA 58.777 45.455 0.19 0.00 38.76 2.94
109 110 3.254411 TCTCGTTGCTATGCATCTCCTAG 59.746 47.826 0.19 0.00 38.76 3.02
110 111 3.222603 TCGTTGCTATGCATCTCCTAGA 58.777 45.455 0.19 0.00 38.76 2.43
111 112 3.829026 TCGTTGCTATGCATCTCCTAGAT 59.171 43.478 0.19 0.00 38.76 1.98
112 113 5.010282 TCGTTGCTATGCATCTCCTAGATA 58.990 41.667 0.19 0.00 38.76 1.98
113 114 5.124617 TCGTTGCTATGCATCTCCTAGATAG 59.875 44.000 0.19 0.00 38.76 2.08
114 115 5.124617 CGTTGCTATGCATCTCCTAGATAGA 59.875 44.000 0.19 0.00 38.76 1.98
115 116 6.183360 CGTTGCTATGCATCTCCTAGATAGAT 60.183 42.308 0.19 0.00 38.76 1.98
116 117 6.957920 TGCTATGCATCTCCTAGATAGATC 57.042 41.667 0.19 0.00 32.12 2.75
117 118 6.671605 TGCTATGCATCTCCTAGATAGATCT 58.328 40.000 0.19 0.00 32.12 2.75
118 119 7.124721 TGCTATGCATCTCCTAGATAGATCTT 58.875 38.462 0.19 0.00 32.12 2.40
119 120 7.068470 TGCTATGCATCTCCTAGATAGATCTTG 59.932 40.741 0.19 0.00 32.12 3.02
120 121 5.657826 TGCATCTCCTAGATAGATCTTGC 57.342 43.478 0.00 0.69 38.32 4.01
121 122 4.157472 TGCATCTCCTAGATAGATCTTGCG 59.843 45.833 0.00 0.00 36.48 4.85
122 123 4.157656 GCATCTCCTAGATAGATCTTGCGT 59.842 45.833 0.00 0.00 38.32 5.24
123 124 5.639757 CATCTCCTAGATAGATCTTGCGTG 58.360 45.833 0.00 0.00 38.32 5.34
124 125 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35
125 126 5.000591 TCTCCTAGATAGATCTTGCGTGAG 58.999 45.833 0.00 1.23 38.32 3.51
160 161 6.724694 TTTGAAATTGCATGCTATGTTTCC 57.275 33.333 20.33 1.00 0.00 3.13
161 162 4.757594 TGAAATTGCATGCTATGTTTCCC 58.242 39.130 20.33 0.64 0.00 3.97
162 163 4.222366 TGAAATTGCATGCTATGTTTCCCA 59.778 37.500 20.33 3.39 0.00 4.37
163 164 4.822685 AATTGCATGCTATGTTTCCCAA 57.177 36.364 20.33 0.30 0.00 4.12
164 165 3.591196 TTGCATGCTATGTTTCCCAAC 57.409 42.857 20.33 0.00 0.00 3.77
166 167 2.492881 TGCATGCTATGTTTCCCAACAG 59.507 45.455 20.33 0.00 46.25 3.16
167 168 2.493278 GCATGCTATGTTTCCCAACAGT 59.507 45.455 11.37 0.00 46.25 3.55
168 169 3.674138 GCATGCTATGTTTCCCAACAGTG 60.674 47.826 11.37 0.00 46.25 3.66
169 170 2.513753 TGCTATGTTTCCCAACAGTGG 58.486 47.619 0.00 0.00 46.25 4.00
170 171 2.158534 TGCTATGTTTCCCAACAGTGGT 60.159 45.455 0.00 0.00 46.25 4.16
171 172 3.073209 TGCTATGTTTCCCAACAGTGGTA 59.927 43.478 0.00 0.00 46.25 3.25
172 173 4.263727 TGCTATGTTTCCCAACAGTGGTAT 60.264 41.667 0.00 0.00 46.25 2.73
173 174 4.335594 GCTATGTTTCCCAACAGTGGTATC 59.664 45.833 0.00 0.00 46.25 2.24
174 175 3.866703 TGTTTCCCAACAGTGGTATCA 57.133 42.857 0.00 0.00 44.30 2.15
175 176 3.750371 TGTTTCCCAACAGTGGTATCAG 58.250 45.455 0.00 0.00 44.30 2.90
176 177 3.392947 TGTTTCCCAACAGTGGTATCAGA 59.607 43.478 0.00 0.00 44.30 3.27
177 178 3.981071 TTCCCAACAGTGGTATCAGAG 57.019 47.619 0.00 0.00 44.30 3.35
178 179 1.555075 TCCCAACAGTGGTATCAGAGC 59.445 52.381 0.00 0.00 44.30 4.09
179 180 1.407437 CCCAACAGTGGTATCAGAGCC 60.407 57.143 0.00 0.00 44.30 4.70
180 181 1.278985 CCAACAGTGGTATCAGAGCCA 59.721 52.381 0.00 0.00 40.42 4.75
181 182 2.290260 CCAACAGTGGTATCAGAGCCAA 60.290 50.000 0.00 0.00 40.42 4.52
182 183 3.005554 CAACAGTGGTATCAGAGCCAAG 58.994 50.000 0.00 0.00 36.41 3.61
183 184 2.260822 ACAGTGGTATCAGAGCCAAGT 58.739 47.619 0.00 0.00 36.41 3.16
184 185 2.639839 ACAGTGGTATCAGAGCCAAGTT 59.360 45.455 0.00 0.00 36.41 2.66
185 186 3.073062 ACAGTGGTATCAGAGCCAAGTTT 59.927 43.478 0.00 0.00 36.41 2.66
186 187 4.286032 ACAGTGGTATCAGAGCCAAGTTTA 59.714 41.667 0.00 0.00 36.41 2.01
187 188 5.045578 ACAGTGGTATCAGAGCCAAGTTTAT 60.046 40.000 0.00 0.00 36.41 1.40
188 189 5.295292 CAGTGGTATCAGAGCCAAGTTTATG 59.705 44.000 0.00 0.00 36.41 1.90
189 190 4.035675 GTGGTATCAGAGCCAAGTTTATGC 59.964 45.833 0.00 0.00 36.41 3.14
190 191 3.248602 GGTATCAGAGCCAAGTTTATGCG 59.751 47.826 0.00 0.00 0.00 4.73
191 192 2.472695 TCAGAGCCAAGTTTATGCGT 57.527 45.000 0.00 0.00 0.00 5.24
192 193 3.603158 TCAGAGCCAAGTTTATGCGTA 57.397 42.857 0.00 0.00 0.00 4.42
193 194 3.521560 TCAGAGCCAAGTTTATGCGTAG 58.478 45.455 0.00 0.00 0.00 3.51
194 195 3.194755 TCAGAGCCAAGTTTATGCGTAGA 59.805 43.478 0.00 0.00 0.00 2.59
195 196 4.122776 CAGAGCCAAGTTTATGCGTAGAT 58.877 43.478 0.00 0.00 0.00 1.98
196 197 5.068591 TCAGAGCCAAGTTTATGCGTAGATA 59.931 40.000 0.00 0.00 0.00 1.98
197 198 5.753438 CAGAGCCAAGTTTATGCGTAGATAA 59.247 40.000 0.00 0.00 0.00 1.75
198 199 6.425114 CAGAGCCAAGTTTATGCGTAGATAAT 59.575 38.462 0.00 0.00 0.00 1.28
199 200 7.598869 CAGAGCCAAGTTTATGCGTAGATAATA 59.401 37.037 0.00 0.00 0.00 0.98
200 201 8.314751 AGAGCCAAGTTTATGCGTAGATAATAT 58.685 33.333 0.00 0.00 0.00 1.28
201 202 8.256611 AGCCAAGTTTATGCGTAGATAATATG 57.743 34.615 0.00 0.00 0.00 1.78
202 203 6.961554 GCCAAGTTTATGCGTAGATAATATGC 59.038 38.462 0.00 0.00 0.00 3.14
203 204 7.360861 GCCAAGTTTATGCGTAGATAATATGCA 60.361 37.037 4.41 4.41 42.73 3.96
204 205 7.957484 CCAAGTTTATGCGTAGATAATATGCAC 59.043 37.037 4.04 0.00 41.56 4.57
205 206 7.278211 AGTTTATGCGTAGATAATATGCACG 57.722 36.000 4.04 0.00 41.56 5.34
206 207 7.088272 AGTTTATGCGTAGATAATATGCACGA 58.912 34.615 4.04 0.00 41.56 4.35
207 208 7.273598 AGTTTATGCGTAGATAATATGCACGAG 59.726 37.037 4.04 0.00 41.56 4.18
208 209 4.499037 TGCGTAGATAATATGCACGAGT 57.501 40.909 7.23 0.00 34.84 4.18
209 210 5.616488 TGCGTAGATAATATGCACGAGTA 57.384 39.130 7.23 0.00 34.84 2.59
210 211 6.004408 TGCGTAGATAATATGCACGAGTAA 57.996 37.500 7.23 0.00 34.84 2.24
211 212 6.440436 TGCGTAGATAATATGCACGAGTAAA 58.560 36.000 7.23 0.00 34.84 2.01
212 213 6.919115 TGCGTAGATAATATGCACGAGTAAAA 59.081 34.615 7.23 0.00 34.84 1.52
213 214 7.096353 TGCGTAGATAATATGCACGAGTAAAAC 60.096 37.037 7.23 0.00 34.84 2.43
214 215 7.096353 GCGTAGATAATATGCACGAGTAAAACA 60.096 37.037 7.23 0.00 34.66 2.83
215 216 8.205948 CGTAGATAATATGCACGAGTAAAACAC 58.794 37.037 0.00 0.00 34.66 3.32
216 217 9.027129 GTAGATAATATGCACGAGTAAAACACA 57.973 33.333 0.00 0.00 0.00 3.72
217 218 8.487313 AGATAATATGCACGAGTAAAACACAA 57.513 30.769 0.00 0.00 0.00 3.33
218 219 8.941977 AGATAATATGCACGAGTAAAACACAAA 58.058 29.630 0.00 0.00 0.00 2.83
219 220 9.549509 GATAATATGCACGAGTAAAACACAAAA 57.450 29.630 0.00 0.00 0.00 2.44
220 221 9.900710 ATAATATGCACGAGTAAAACACAAAAA 57.099 25.926 0.00 0.00 0.00 1.94
221 222 7.851822 ATATGCACGAGTAAAACACAAAAAG 57.148 32.000 0.00 0.00 0.00 2.27
222 223 5.049398 TGCACGAGTAAAACACAAAAAGT 57.951 34.783 0.00 0.00 0.00 2.66
223 224 5.462405 TGCACGAGTAAAACACAAAAAGTT 58.538 33.333 0.00 0.00 0.00 2.66
224 225 5.343593 TGCACGAGTAAAACACAAAAAGTTG 59.656 36.000 0.00 0.00 40.84 3.16
234 235 2.530701 ACAAAAAGTTGTGGGTGGTGA 58.469 42.857 0.00 0.00 46.40 4.02
235 236 3.103742 ACAAAAAGTTGTGGGTGGTGAT 58.896 40.909 0.00 0.00 46.40 3.06
236 237 3.132111 ACAAAAAGTTGTGGGTGGTGATC 59.868 43.478 0.00 0.00 46.40 2.92
237 238 1.604604 AAAGTTGTGGGTGGTGATCG 58.395 50.000 0.00 0.00 0.00 3.69
238 239 0.472471 AAGTTGTGGGTGGTGATCGT 59.528 50.000 0.00 0.00 0.00 3.73
239 240 0.034896 AGTTGTGGGTGGTGATCGTC 59.965 55.000 0.00 0.00 0.00 4.20
240 241 0.250124 GTTGTGGGTGGTGATCGTCA 60.250 55.000 0.00 0.00 0.00 4.35
241 242 0.690192 TTGTGGGTGGTGATCGTCAT 59.310 50.000 0.00 0.00 0.00 3.06
242 243 1.562783 TGTGGGTGGTGATCGTCATA 58.437 50.000 0.00 0.00 0.00 2.15
243 244 2.115427 TGTGGGTGGTGATCGTCATAT 58.885 47.619 0.00 0.00 0.00 1.78
244 245 2.503765 TGTGGGTGGTGATCGTCATATT 59.496 45.455 0.00 0.00 0.00 1.28
253 254 3.809279 GTGATCGTCATATTGCATCACCA 59.191 43.478 0.00 0.00 38.17 4.17
273 274 1.803334 TTGGGTGCACTGTTCGTATC 58.197 50.000 17.98 0.00 0.00 2.24
275 276 1.082117 GGGTGCACTGTTCGTATCCG 61.082 60.000 17.98 0.00 0.00 4.18
356 358 2.167662 CCCGTTTGAAGTTGGCCTAAT 58.832 47.619 3.32 0.00 0.00 1.73
386 388 2.224402 GGGAGCTCTTGTTTGACACTCT 60.224 50.000 14.64 0.00 0.00 3.24
469 502 5.438761 AAAAACTAGCAAGCGATGTCTTT 57.561 34.783 0.00 0.00 0.00 2.52
472 505 2.028112 ACTAGCAAGCGATGTCTTTCCA 60.028 45.455 0.00 0.00 0.00 3.53
474 507 2.440409 AGCAAGCGATGTCTTTCCATT 58.560 42.857 0.00 0.00 0.00 3.16
475 508 3.609853 AGCAAGCGATGTCTTTCCATTA 58.390 40.909 0.00 0.00 0.00 1.90
476 509 4.009675 AGCAAGCGATGTCTTTCCATTAA 58.990 39.130 0.00 0.00 0.00 1.40
478 511 4.334443 CAAGCGATGTCTTTCCATTAACG 58.666 43.478 0.00 0.00 0.00 3.18
479 512 3.596214 AGCGATGTCTTTCCATTAACGT 58.404 40.909 0.00 0.00 0.00 3.99
480 513 4.000988 AGCGATGTCTTTCCATTAACGTT 58.999 39.130 5.88 5.88 0.00 3.99
482 515 4.553429 GCGATGTCTTTCCATTAACGTTTG 59.447 41.667 5.91 0.00 0.00 2.93
483 516 5.086058 CGATGTCTTTCCATTAACGTTTGG 58.914 41.667 5.91 9.66 0.00 3.28
484 517 5.106869 CGATGTCTTTCCATTAACGTTTGGA 60.107 40.000 16.10 16.10 40.24 3.53
485 518 5.682943 TGTCTTTCCATTAACGTTTGGAG 57.317 39.130 18.53 10.64 42.73 3.86
486 519 5.127491 TGTCTTTCCATTAACGTTTGGAGT 58.873 37.500 18.53 0.00 42.73 3.85
487 520 6.289834 TGTCTTTCCATTAACGTTTGGAGTA 58.710 36.000 18.53 11.73 42.73 2.59
488 521 6.425721 TGTCTTTCCATTAACGTTTGGAGTAG 59.574 38.462 18.53 18.36 42.73 2.57
489 522 6.426025 GTCTTTCCATTAACGTTTGGAGTAGT 59.574 38.462 18.53 0.00 42.73 2.73
527 560 4.670896 AGCCAGCTTTAAAACACACAAT 57.329 36.364 0.00 0.00 0.00 2.71
528 561 5.022282 AGCCAGCTTTAAAACACACAATT 57.978 34.783 0.00 0.00 0.00 2.32
529 562 5.427378 AGCCAGCTTTAAAACACACAATTT 58.573 33.333 0.00 0.00 0.00 1.82
530 563 5.879777 AGCCAGCTTTAAAACACACAATTTT 59.120 32.000 0.00 0.00 33.85 1.82
747 813 0.690192 TTGAAGGATCACCGGCTTGA 59.310 50.000 0.00 0.00 41.83 3.02
782 848 3.181480 CCCGTGAAAAGAAAGGAGCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
866 935 2.383527 GCGAAACTCACTCGGCCAG 61.384 63.158 2.24 1.58 36.80 4.85
869 938 1.569479 GAAACTCACTCGGCCAGCAC 61.569 60.000 2.24 0.00 0.00 4.40
1114 1189 3.004734 CCTTGCCGCCCTCTTATTTAATG 59.995 47.826 0.00 0.00 0.00 1.90
1120 1196 5.238583 CCGCCCTCTTATTTAATGGAGTAG 58.761 45.833 8.20 2.93 0.00 2.57
1124 1200 7.254795 CGCCCTCTTATTTAATGGAGTAGTTTG 60.255 40.741 8.20 0.00 0.00 2.93
1169 1245 3.274095 AGCTATTGTTCTTCCTCCTGC 57.726 47.619 0.00 0.00 0.00 4.85
1196 1272 3.003173 TGGAGCGGAGGAGGTTGG 61.003 66.667 0.00 0.00 0.00 3.77
1345 1421 0.428102 TCCAGGGGATTAAGGGGGAA 59.572 55.000 0.00 0.00 0.00 3.97
1346 1422 1.013322 TCCAGGGGATTAAGGGGGAAT 59.987 52.381 0.00 0.00 0.00 3.01
1357 1433 5.586155 TTAAGGGGGAATCTGTTTGTGTA 57.414 39.130 0.00 0.00 0.00 2.90
1372 1449 6.582636 TGTTTGTGTAGATAATGGAGCTAGG 58.417 40.000 0.00 0.00 0.00 3.02
1489 1580 7.246311 ACATTCAGATTAAATGAGCTGAAACG 58.754 34.615 9.47 7.05 46.60 3.60
1495 1586 8.607459 CAGATTAAATGAGCTGAAACGTTAGAT 58.393 33.333 0.00 0.00 0.00 1.98
1496 1587 9.817809 AGATTAAATGAGCTGAAACGTTAGATA 57.182 29.630 0.00 0.00 0.00 1.98
1523 1614 5.545658 TTAATTGAGAGGACACGATTTGC 57.454 39.130 0.00 0.00 0.00 3.68
1675 1853 2.434702 AGGGAAATACAGCTTAGGGTCG 59.565 50.000 0.00 0.00 0.00 4.79
1717 1895 6.461509 GCAAACTTATGTATTCCTTGATGGGG 60.462 42.308 0.00 0.00 36.20 4.96
1816 1996 5.751509 CGAACGGAATGATGATACTGGTAAA 59.248 40.000 0.00 0.00 0.00 2.01
1847 2027 1.523758 CGTGGGGAGTTCTGAAAAGG 58.476 55.000 0.00 0.00 0.00 3.11
1893 2073 4.021719 GGAGGCAATTGGTGATAATGATGG 60.022 45.833 7.72 0.00 0.00 3.51
1938 2118 1.412710 GCATGTCTCTCCGGTGGAATA 59.587 52.381 0.00 0.00 0.00 1.75
2035 2215 2.279582 AGAGTGTTCGAAGGCATACG 57.720 50.000 0.00 0.00 0.00 3.06
2059 2240 6.515035 CGGCTGAAGAGAAGGTAAAACATTTT 60.515 38.462 0.00 0.00 0.00 1.82
2230 2412 3.788227 TCCAGGTATCAGCTTGTTTGT 57.212 42.857 0.00 0.00 0.00 2.83
2246 2428 6.513393 GCTTGTTTGTTGAGTAGTGTAATGCT 60.513 38.462 0.00 0.00 0.00 3.79
2247 2429 6.539649 TGTTTGTTGAGTAGTGTAATGCTC 57.460 37.500 0.00 0.00 33.04 4.26
2248 2430 6.288294 TGTTTGTTGAGTAGTGTAATGCTCT 58.712 36.000 0.00 0.00 33.53 4.09
2249 2431 6.202762 TGTTTGTTGAGTAGTGTAATGCTCTG 59.797 38.462 0.00 0.00 33.53 3.35
2250 2432 4.245660 TGTTGAGTAGTGTAATGCTCTGC 58.754 43.478 0.00 0.00 33.53 4.26
2251 2433 4.245660 GTTGAGTAGTGTAATGCTCTGCA 58.754 43.478 0.00 0.00 44.86 4.41
2303 2485 0.951558 ACATCCTGTGAAAACGGCAC 59.048 50.000 0.00 0.00 36.81 5.01
2480 2672 3.080319 GGCCTGCAATGATCCTCTTATC 58.920 50.000 0.00 0.00 0.00 1.75
2618 2810 1.356738 TCTTCCGAAGTACTCCCTCCA 59.643 52.381 8.01 0.00 0.00 3.86
2636 2828 7.386851 TCCCTCCATAAAGAAATATAAGAGCG 58.613 38.462 0.00 0.00 0.00 5.03
2639 2831 9.706691 CCTCCATAAAGAAATATAAGAGCGTTA 57.293 33.333 0.00 0.00 0.00 3.18
3003 3195 7.840931 ACAAGGGGTCTTTTGAATCAAATATC 58.159 34.615 9.41 1.71 33.19 1.63
3052 3244 4.621747 GCACTGCTGAAGAGGTACTGTATT 60.622 45.833 0.00 0.00 41.55 1.89
3054 3246 3.861840 TGCTGAAGAGGTACTGTATTGC 58.138 45.455 0.00 0.00 41.55 3.56
3056 3248 3.798202 CTGAAGAGGTACTGTATTGCCC 58.202 50.000 0.00 0.00 41.55 5.36
3087 3280 5.768333 ATTTTGCTTGCGAAGAAATTAGC 57.232 34.783 0.00 0.00 0.00 3.09
3285 3478 2.879646 CAAATGGTTTGCAATGCAGGTT 59.120 40.909 8.31 0.00 40.61 3.50
3366 3559 3.371168 CGTGCAACTAATTGTGTGCTTT 58.629 40.909 9.54 0.00 38.17 3.51
3622 3816 1.001406 CTCAGGAGAACGGCTGAAAGT 59.999 52.381 0.00 0.00 35.30 2.66
3660 3854 1.727213 GCATCAGTGTTCGCTTGAAGC 60.727 52.381 7.20 7.20 38.02 3.86
4133 4329 5.513376 TCAATATGCATCAACATCGAAAGC 58.487 37.500 0.19 0.00 0.00 3.51
4236 4432 0.318120 AACTGCAAATGGCCCTTTCG 59.682 50.000 2.61 1.48 43.89 3.46
4311 4507 3.220110 TGGCACCCTACTAGATTCTACG 58.780 50.000 0.00 0.00 0.00 3.51
4398 4594 1.271926 GGACCGCCATTATATTGGGCT 60.272 52.381 14.09 0.00 45.53 5.19
4485 4681 9.490663 GATATTATTGACGGTGAAAGAAAAGTG 57.509 33.333 0.00 0.00 0.00 3.16
4500 4696 0.892814 AAGTGGAAGCTGCTTCTGCC 60.893 55.000 33.75 22.64 40.07 4.85
4684 4880 4.561326 GCCAAACCAGACAATGCAACTAAT 60.561 41.667 0.00 0.00 0.00 1.73
4713 4909 9.277783 GAAATACTGTAGGCATGATTACTGAAT 57.722 33.333 15.74 3.38 0.00 2.57
4718 4914 9.060347 ACTGTAGGCATGATTACTGAATTTATG 57.940 33.333 15.74 0.00 0.00 1.90
4719 4915 8.978874 TGTAGGCATGATTACTGAATTTATGT 57.021 30.769 0.00 0.00 0.00 2.29
4836 5033 7.735500 TCAGTAATTCTACGATTTTTCCAACG 58.264 34.615 0.00 0.00 32.87 4.10
4837 5034 6.464834 CAGTAATTCTACGATTTTTCCAACGC 59.535 38.462 0.00 0.00 32.87 4.84
4838 5035 5.365403 AATTCTACGATTTTTCCAACGCA 57.635 34.783 0.00 0.00 0.00 5.24
5081 5284 9.377312 GCAAGGTAGATGGATTATTCTTCTATC 57.623 37.037 0.33 0.12 32.85 2.08
5111 5314 6.294176 CGCTGGATTAATTTCTCATAAAGGGG 60.294 42.308 0.00 0.00 0.00 4.79
5112 5315 6.551227 GCTGGATTAATTTCTCATAAAGGGGT 59.449 38.462 0.00 0.00 0.00 4.95
5113 5316 7.255625 GCTGGATTAATTTCTCATAAAGGGGTC 60.256 40.741 0.00 0.00 0.00 4.46
5115 5318 9.009675 TGGATTAATTTCTCATAAAGGGGTCTA 57.990 33.333 0.00 0.00 0.00 2.59
5116 5319 9.862149 GGATTAATTTCTCATAAAGGGGTCTAA 57.138 33.333 0.00 0.00 0.00 2.10
5144 5347 7.640597 AGATGCCTAATAACCCAAACTAAAC 57.359 36.000 0.00 0.00 0.00 2.01
5148 5351 6.778559 TGCCTAATAACCCAAACTAAACAACT 59.221 34.615 0.00 0.00 0.00 3.16
5272 5475 2.550208 CCTTTCCGTAACTTGGTGCTCT 60.550 50.000 0.00 0.00 0.00 4.09
5277 5480 2.616842 CCGTAACTTGGTGCTCTTTTGT 59.383 45.455 0.00 0.00 0.00 2.83
5426 5629 1.298014 GGCACCACTAGAGCAGCTT 59.702 57.895 0.00 0.00 0.00 3.74
5515 5718 3.055094 CCTACCAATCAACAGGTACAGCT 60.055 47.826 0.00 0.00 39.31 4.24
5758 5967 7.566760 TGTTCAAACACTACAATCAAGACAT 57.433 32.000 0.00 0.00 33.17 3.06
5799 6008 3.531538 TGCAAGTCAGAGAAAACGAGTT 58.468 40.909 0.00 0.00 0.00 3.01
5822 6031 2.821969 CCTGCAAAGGTAACAGAAGCAT 59.178 45.455 0.00 0.00 41.41 3.79
6104 6313 7.620880 TGTGCTTCCTACATACTGACTAAAAT 58.379 34.615 0.00 0.00 0.00 1.82
6276 6485 4.980805 GCGGTCGGTGTGCTCCAA 62.981 66.667 0.00 0.00 0.00 3.53
6522 6731 6.066690 AGCATGTTTCATAGATGTATTGGCT 58.933 36.000 0.00 0.00 30.42 4.75
6592 6802 6.206634 TGCCCTTTTGTTATTGTAGTGAGAAG 59.793 38.462 0.00 0.00 0.00 2.85
6666 6876 0.034896 AACACTTCCTGGTAGGCGTG 59.965 55.000 5.28 12.47 40.21 5.34
6790 7000 4.618920 ACGGTTGAAAGAGTCCTACAAT 57.381 40.909 0.00 0.00 0.00 2.71
6799 7009 2.582226 TCCTACAATGCGCGCTCG 60.582 61.111 33.29 21.76 39.07 5.03
6923 7133 1.449353 GATCGGCTGCCAGATCCTT 59.551 57.895 27.89 11.21 37.79 3.36
6936 7146 3.604582 CAGATCCTTGTTTCTCTGGTCC 58.395 50.000 0.00 0.00 33.15 4.46
7024 7234 1.008995 CTGCCCGTGTGGTTTTTCG 60.009 57.895 0.00 0.00 36.04 3.46
7056 7266 5.001232 TGAGGAATTGTAGCAACTTGTACC 58.999 41.667 0.00 0.00 0.00 3.34
7110 7320 2.158842 AGGGAGCCTCTTCATTTGATCG 60.159 50.000 0.00 0.00 0.00 3.69
7126 7336 6.978343 TTTGATCGAATTTCTCGGTACAAT 57.022 33.333 0.00 0.00 42.35 2.71
7140 7350 5.179533 TCGGTACAATACTTTGCTGCATTA 58.820 37.500 1.84 0.00 36.22 1.90
7156 7366 5.252969 TGCATTAATTTCATCCACTGAGC 57.747 39.130 0.00 0.00 34.68 4.26
7157 7367 4.705991 TGCATTAATTTCATCCACTGAGCA 59.294 37.500 0.00 0.00 34.68 4.26
7158 7368 5.163591 TGCATTAATTTCATCCACTGAGCAG 60.164 40.000 0.00 0.00 34.68 4.24
7159 7369 4.970662 TTAATTTCATCCACTGAGCAGC 57.029 40.909 0.00 0.00 34.68 5.25
7160 7370 2.502142 ATTTCATCCACTGAGCAGCA 57.498 45.000 0.00 0.00 34.68 4.41
7161 7371 2.275134 TTTCATCCACTGAGCAGCAA 57.725 45.000 0.00 0.00 34.68 3.91
7162 7372 1.817357 TTCATCCACTGAGCAGCAAG 58.183 50.000 0.00 0.00 34.68 4.01
7163 7373 0.675837 TCATCCACTGAGCAGCAAGC 60.676 55.000 0.00 0.00 46.19 4.01
7346 10557 4.787280 CTGCGTCTCCCCCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
7568 10784 2.356553 GGTACCGTGTTGCTCGCA 60.357 61.111 0.00 0.00 0.00 5.10
7915 11145 3.966543 CCTTCGGCCCACCTTGGT 61.967 66.667 0.00 0.00 35.17 3.67
8000 11230 1.352687 GGTTTCCTGCCTCCTCTTCTT 59.647 52.381 0.00 0.00 0.00 2.52
8043 11273 0.456221 ATCCGTCGCTTCGTCAGATT 59.544 50.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.879104 ATAGTCGAACGTCTTCTCGAAT 57.121 40.909 13.79 13.79 44.98 3.34
2 3 5.521372 TGATATAGTCGAACGTCTTCTCGAA 59.479 40.000 11.31 0.00 44.98 3.71
3 4 5.045872 TGATATAGTCGAACGTCTTCTCGA 58.954 41.667 5.99 5.99 41.54 4.04
4 5 5.326120 TGATATAGTCGAACGTCTTCTCG 57.674 43.478 0.97 0.97 36.39 4.04
5 6 5.908499 GGTTGATATAGTCGAACGTCTTCTC 59.092 44.000 0.00 0.00 0.00 2.87
6 7 5.503683 CGGTTGATATAGTCGAACGTCTTCT 60.504 44.000 0.00 0.00 44.71 2.85
7 8 4.669728 CGGTTGATATAGTCGAACGTCTTC 59.330 45.833 0.00 0.00 44.71 2.87
8 9 4.595116 CGGTTGATATAGTCGAACGTCTT 58.405 43.478 0.00 0.00 44.71 3.01
9 10 4.206698 CGGTTGATATAGTCGAACGTCT 57.793 45.455 0.00 0.00 44.71 4.18
13 14 2.724349 ACGCGGTTGATATAGTCGAAC 58.276 47.619 12.47 0.00 0.00 3.95
14 15 3.425577 AACGCGGTTGATATAGTCGAA 57.574 42.857 12.47 0.00 0.00 3.71
15 16 4.035558 ACTTAACGCGGTTGATATAGTCGA 59.964 41.667 12.47 0.00 0.00 4.20
16 17 4.285292 ACTTAACGCGGTTGATATAGTCG 58.715 43.478 12.47 0.00 0.00 4.18
17 18 7.550494 GTTAACTTAACGCGGTTGATATAGTC 58.450 38.462 12.47 0.00 0.00 2.59
18 19 7.455331 GTTAACTTAACGCGGTTGATATAGT 57.545 36.000 12.47 0.00 0.00 2.12
32 33 5.135330 CGAAAGTGGAAGCGTTAACTTAAC 58.865 41.667 3.71 2.01 32.69 2.01
33 34 4.211794 CCGAAAGTGGAAGCGTTAACTTAA 59.788 41.667 3.71 0.00 32.69 1.85
34 35 3.742369 CCGAAAGTGGAAGCGTTAACTTA 59.258 43.478 3.71 0.00 32.69 2.24
35 36 2.546789 CCGAAAGTGGAAGCGTTAACTT 59.453 45.455 3.71 0.00 34.40 2.66
36 37 2.140717 CCGAAAGTGGAAGCGTTAACT 58.859 47.619 3.71 0.00 0.00 2.24
37 38 1.869132 ACCGAAAGTGGAAGCGTTAAC 59.131 47.619 0.00 0.00 0.00 2.01
38 39 2.137523 GACCGAAAGTGGAAGCGTTAA 58.862 47.619 0.00 0.00 0.00 2.01
39 40 1.342174 AGACCGAAAGTGGAAGCGTTA 59.658 47.619 0.00 0.00 0.00 3.18
40 41 0.106149 AGACCGAAAGTGGAAGCGTT 59.894 50.000 0.00 0.00 0.00 4.84
41 42 0.963962 TAGACCGAAAGTGGAAGCGT 59.036 50.000 0.00 0.00 0.00 5.07
42 43 1.927174 CATAGACCGAAAGTGGAAGCG 59.073 52.381 0.00 0.00 0.00 4.68
43 44 3.190874 CTCATAGACCGAAAGTGGAAGC 58.809 50.000 0.00 0.00 0.00 3.86
44 45 3.430929 CCCTCATAGACCGAAAGTGGAAG 60.431 52.174 0.00 0.00 0.00 3.46
45 46 2.500098 CCCTCATAGACCGAAAGTGGAA 59.500 50.000 0.00 0.00 0.00 3.53
46 47 2.108168 CCCTCATAGACCGAAAGTGGA 58.892 52.381 0.00 0.00 0.00 4.02
47 48 1.831736 ACCCTCATAGACCGAAAGTGG 59.168 52.381 0.00 0.00 0.00 4.00
48 49 3.446161 TGTACCCTCATAGACCGAAAGTG 59.554 47.826 0.00 0.00 0.00 3.16
49 50 3.705051 TGTACCCTCATAGACCGAAAGT 58.295 45.455 0.00 0.00 0.00 2.66
50 51 4.501571 CCATGTACCCTCATAGACCGAAAG 60.502 50.000 0.00 0.00 0.00 2.62
51 52 3.386726 CCATGTACCCTCATAGACCGAAA 59.613 47.826 0.00 0.00 0.00 3.46
52 53 2.963101 CCATGTACCCTCATAGACCGAA 59.037 50.000 0.00 0.00 0.00 4.30
53 54 2.176148 TCCATGTACCCTCATAGACCGA 59.824 50.000 0.00 0.00 0.00 4.69
54 55 2.296471 GTCCATGTACCCTCATAGACCG 59.704 54.545 0.00 0.00 32.96 4.79
55 56 3.069729 GTGTCCATGTACCCTCATAGACC 59.930 52.174 0.00 0.00 36.27 3.85
56 57 3.704566 TGTGTCCATGTACCCTCATAGAC 59.295 47.826 0.00 0.00 37.12 2.59
57 58 3.704566 GTGTGTCCATGTACCCTCATAGA 59.295 47.826 0.00 0.00 0.00 1.98
58 59 3.706594 AGTGTGTCCATGTACCCTCATAG 59.293 47.826 0.00 0.00 0.00 2.23
59 60 3.704566 GAGTGTGTCCATGTACCCTCATA 59.295 47.826 0.00 0.00 0.00 2.15
60 61 2.501723 GAGTGTGTCCATGTACCCTCAT 59.498 50.000 0.00 0.00 0.00 2.90
61 62 1.899814 GAGTGTGTCCATGTACCCTCA 59.100 52.381 0.00 0.00 0.00 3.86
62 63 2.180276 AGAGTGTGTCCATGTACCCTC 58.820 52.381 0.00 0.00 0.00 4.30
63 64 2.327325 AGAGTGTGTCCATGTACCCT 57.673 50.000 0.00 0.00 0.00 4.34
64 65 2.354805 GGAAGAGTGTGTCCATGTACCC 60.355 54.545 0.00 0.00 33.79 3.69
65 66 2.567615 AGGAAGAGTGTGTCCATGTACC 59.432 50.000 0.00 0.00 36.28 3.34
66 67 3.963428 AGGAAGAGTGTGTCCATGTAC 57.037 47.619 0.00 0.00 36.28 2.90
67 68 4.160329 AGAAGGAAGAGTGTGTCCATGTA 58.840 43.478 0.00 0.00 36.28 2.29
68 69 2.975489 AGAAGGAAGAGTGTGTCCATGT 59.025 45.455 0.00 0.00 36.28 3.21
69 70 3.594134 GAGAAGGAAGAGTGTGTCCATG 58.406 50.000 0.00 0.00 36.28 3.66
70 71 2.232452 CGAGAAGGAAGAGTGTGTCCAT 59.768 50.000 0.00 0.00 36.28 3.41
71 72 1.613925 CGAGAAGGAAGAGTGTGTCCA 59.386 52.381 0.00 0.00 36.28 4.02
72 73 1.614413 ACGAGAAGGAAGAGTGTGTCC 59.386 52.381 0.00 0.00 0.00 4.02
73 74 3.053455 CAACGAGAAGGAAGAGTGTGTC 58.947 50.000 0.00 0.00 0.00 3.67
74 75 2.803492 GCAACGAGAAGGAAGAGTGTGT 60.803 50.000 0.00 0.00 0.00 3.72
75 76 1.795286 GCAACGAGAAGGAAGAGTGTG 59.205 52.381 0.00 0.00 0.00 3.82
76 77 1.689273 AGCAACGAGAAGGAAGAGTGT 59.311 47.619 0.00 0.00 0.00 3.55
77 78 2.447244 AGCAACGAGAAGGAAGAGTG 57.553 50.000 0.00 0.00 0.00 3.51
78 79 3.677424 GCATAGCAACGAGAAGGAAGAGT 60.677 47.826 0.00 0.00 0.00 3.24
79 80 2.863137 GCATAGCAACGAGAAGGAAGAG 59.137 50.000 0.00 0.00 0.00 2.85
80 81 2.233676 TGCATAGCAACGAGAAGGAAGA 59.766 45.455 0.00 0.00 34.76 2.87
81 82 2.621338 TGCATAGCAACGAGAAGGAAG 58.379 47.619 0.00 0.00 34.76 3.46
82 83 2.760634 TGCATAGCAACGAGAAGGAA 57.239 45.000 0.00 0.00 34.76 3.36
83 84 2.432146 AGATGCATAGCAACGAGAAGGA 59.568 45.455 0.00 0.00 43.62 3.36
84 85 2.799412 GAGATGCATAGCAACGAGAAGG 59.201 50.000 0.00 0.00 43.62 3.46
85 86 2.799412 GGAGATGCATAGCAACGAGAAG 59.201 50.000 0.00 0.00 43.62 2.85
86 87 2.432146 AGGAGATGCATAGCAACGAGAA 59.568 45.455 0.00 0.00 43.62 2.87
87 88 2.034878 AGGAGATGCATAGCAACGAGA 58.965 47.619 0.00 0.00 43.62 4.04
88 89 2.522836 AGGAGATGCATAGCAACGAG 57.477 50.000 0.00 0.00 43.62 4.18
89 90 3.222603 TCTAGGAGATGCATAGCAACGA 58.777 45.455 0.00 0.00 43.62 3.85
90 91 3.650070 TCTAGGAGATGCATAGCAACG 57.350 47.619 0.00 0.00 43.62 4.10
91 92 6.522625 TCTATCTAGGAGATGCATAGCAAC 57.477 41.667 0.00 0.00 43.62 4.17
92 93 7.124721 AGATCTATCTAGGAGATGCATAGCAA 58.875 38.462 0.00 0.00 37.47 3.91
93 94 6.671605 AGATCTATCTAGGAGATGCATAGCA 58.328 40.000 0.00 0.00 38.03 3.49
94 95 7.428020 CAAGATCTATCTAGGAGATGCATAGC 58.572 42.308 0.00 0.00 35.37 2.97
95 96 7.428020 GCAAGATCTATCTAGGAGATGCATAG 58.572 42.308 0.00 0.00 35.37 2.23
96 97 6.039159 CGCAAGATCTATCTAGGAGATGCATA 59.961 42.308 0.00 0.00 35.65 3.14
97 98 5.163530 CGCAAGATCTATCTAGGAGATGCAT 60.164 44.000 0.00 0.00 35.65 3.96
98 99 4.157472 CGCAAGATCTATCTAGGAGATGCA 59.843 45.833 11.48 0.00 35.65 3.96
99 100 4.157656 ACGCAAGATCTATCTAGGAGATGC 59.842 45.833 11.48 9.81 36.70 3.91
100 101 5.414144 TCACGCAAGATCTATCTAGGAGATG 59.586 44.000 11.48 2.82 36.70 2.90
101 102 5.565509 TCACGCAAGATCTATCTAGGAGAT 58.434 41.667 0.00 7.55 38.77 2.75
102 103 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
103 104 4.379394 GCTCACGCAAGATCTATCTAGGAG 60.379 50.000 0.00 0.94 43.62 3.69
104 105 3.504134 GCTCACGCAAGATCTATCTAGGA 59.496 47.826 0.00 0.00 43.62 2.94
105 106 3.669290 CGCTCACGCAAGATCTATCTAGG 60.669 52.174 0.00 0.00 43.62 3.02
106 107 3.058570 ACGCTCACGCAAGATCTATCTAG 60.059 47.826 0.00 0.00 45.53 2.43
107 108 2.879026 ACGCTCACGCAAGATCTATCTA 59.121 45.455 0.00 0.00 45.53 1.98
108 109 1.678627 ACGCTCACGCAAGATCTATCT 59.321 47.619 0.00 0.00 45.53 1.98
109 110 2.126914 ACGCTCACGCAAGATCTATC 57.873 50.000 0.00 0.00 45.53 2.08
110 111 2.030717 CCTACGCTCACGCAAGATCTAT 60.031 50.000 0.00 0.00 45.53 1.98
111 112 1.333931 CCTACGCTCACGCAAGATCTA 59.666 52.381 0.00 0.00 45.53 1.98
112 113 0.101399 CCTACGCTCACGCAAGATCT 59.899 55.000 0.00 0.00 45.53 2.75
113 114 0.100682 TCCTACGCTCACGCAAGATC 59.899 55.000 0.00 0.00 45.53 2.75
114 115 0.101399 CTCCTACGCTCACGCAAGAT 59.899 55.000 0.00 0.00 45.53 2.40
115 116 1.241990 ACTCCTACGCTCACGCAAGA 61.242 55.000 0.00 0.00 45.53 3.02
116 117 0.388649 AACTCCTACGCTCACGCAAG 60.389 55.000 0.00 0.00 45.53 4.01
117 118 0.032952 AAACTCCTACGCTCACGCAA 59.967 50.000 0.00 0.00 45.53 4.85
118 119 0.032952 AAAACTCCTACGCTCACGCA 59.967 50.000 0.00 0.00 45.53 5.24
119 120 1.145803 AAAAACTCCTACGCTCACGC 58.854 50.000 0.00 0.00 45.53 5.34
135 136 7.308469 GGGAAACATAGCATGCAATTTCAAAAA 60.308 33.333 21.98 0.00 29.42 1.94
136 137 6.149142 GGGAAACATAGCATGCAATTTCAAAA 59.851 34.615 21.98 0.00 29.42 2.44
137 138 5.642919 GGGAAACATAGCATGCAATTTCAAA 59.357 36.000 21.98 0.00 29.42 2.69
138 139 5.177326 GGGAAACATAGCATGCAATTTCAA 58.823 37.500 21.98 0.00 29.42 2.69
139 140 4.222366 TGGGAAACATAGCATGCAATTTCA 59.778 37.500 21.98 6.82 29.42 2.69
140 141 4.757594 TGGGAAACATAGCATGCAATTTC 58.242 39.130 21.98 20.39 0.00 2.17
141 142 4.822685 TGGGAAACATAGCATGCAATTT 57.177 36.364 21.98 13.67 0.00 1.82
142 143 4.020396 TGTTGGGAAACATAGCATGCAATT 60.020 37.500 21.98 6.80 0.00 2.32
143 144 3.514706 TGTTGGGAAACATAGCATGCAAT 59.485 39.130 21.98 1.90 0.00 3.56
144 145 2.896044 TGTTGGGAAACATAGCATGCAA 59.104 40.909 21.98 0.00 0.00 4.08
145 146 2.492881 CTGTTGGGAAACATAGCATGCA 59.507 45.455 21.98 6.36 31.47 3.96
146 147 2.493278 ACTGTTGGGAAACATAGCATGC 59.507 45.455 10.51 10.51 31.47 4.06
147 148 3.119388 CCACTGTTGGGAAACATAGCATG 60.119 47.826 0.00 0.00 39.57 4.06
148 149 3.091545 CCACTGTTGGGAAACATAGCAT 58.908 45.455 0.00 0.00 39.57 3.79
149 150 2.513753 CCACTGTTGGGAAACATAGCA 58.486 47.619 0.00 0.00 39.57 3.49
161 162 2.768253 TGGCTCTGATACCACTGTTG 57.232 50.000 0.00 0.00 0.00 3.33
162 163 2.639839 ACTTGGCTCTGATACCACTGTT 59.360 45.455 0.00 0.00 35.10 3.16
163 164 2.260822 ACTTGGCTCTGATACCACTGT 58.739 47.619 0.00 0.59 35.10 3.55
164 165 3.340814 AACTTGGCTCTGATACCACTG 57.659 47.619 0.00 0.08 35.10 3.66
165 166 5.431765 CATAAACTTGGCTCTGATACCACT 58.568 41.667 0.00 0.00 35.10 4.00
166 167 4.035675 GCATAAACTTGGCTCTGATACCAC 59.964 45.833 0.00 0.00 35.10 4.16
167 168 4.199310 GCATAAACTTGGCTCTGATACCA 58.801 43.478 0.00 0.00 0.00 3.25
168 169 3.248602 CGCATAAACTTGGCTCTGATACC 59.751 47.826 0.00 0.00 0.00 2.73
169 170 3.871594 ACGCATAAACTTGGCTCTGATAC 59.128 43.478 0.00 0.00 0.00 2.24
170 171 4.137116 ACGCATAAACTTGGCTCTGATA 57.863 40.909 0.00 0.00 0.00 2.15
171 172 2.991250 ACGCATAAACTTGGCTCTGAT 58.009 42.857 0.00 0.00 0.00 2.90
172 173 2.472695 ACGCATAAACTTGGCTCTGA 57.527 45.000 0.00 0.00 0.00 3.27
173 174 3.521560 TCTACGCATAAACTTGGCTCTG 58.478 45.455 0.00 0.00 0.00 3.35
174 175 3.887621 TCTACGCATAAACTTGGCTCT 57.112 42.857 0.00 0.00 0.00 4.09
175 176 6.787085 ATTATCTACGCATAAACTTGGCTC 57.213 37.500 0.00 0.00 0.00 4.70
176 177 7.148407 GCATATTATCTACGCATAAACTTGGCT 60.148 37.037 0.00 0.00 0.00 4.75
177 178 6.961554 GCATATTATCTACGCATAAACTTGGC 59.038 38.462 0.00 0.00 0.00 4.52
178 179 7.957484 GTGCATATTATCTACGCATAAACTTGG 59.043 37.037 0.00 0.00 34.66 3.61
179 180 7.684083 CGTGCATATTATCTACGCATAAACTTG 59.316 37.037 0.00 0.00 34.66 3.16
180 181 7.597369 TCGTGCATATTATCTACGCATAAACTT 59.403 33.333 0.00 0.00 34.66 2.66
181 182 7.088272 TCGTGCATATTATCTACGCATAAACT 58.912 34.615 0.00 0.00 34.66 2.66
182 183 7.061905 ACTCGTGCATATTATCTACGCATAAAC 59.938 37.037 0.00 0.00 34.66 2.01
183 184 7.088272 ACTCGTGCATATTATCTACGCATAAA 58.912 34.615 0.00 0.00 34.66 1.40
184 185 6.617879 ACTCGTGCATATTATCTACGCATAA 58.382 36.000 0.00 0.00 34.66 1.90
185 186 6.190954 ACTCGTGCATATTATCTACGCATA 57.809 37.500 0.00 0.00 34.66 3.14
186 187 5.060662 ACTCGTGCATATTATCTACGCAT 57.939 39.130 0.00 0.00 34.66 4.73
187 188 4.499037 ACTCGTGCATATTATCTACGCA 57.501 40.909 0.00 0.00 34.98 5.24
188 189 6.922980 TTTACTCGTGCATATTATCTACGC 57.077 37.500 0.00 0.00 34.98 4.42
189 190 8.205948 GTGTTTTACTCGTGCATATTATCTACG 58.794 37.037 0.00 0.00 36.20 3.51
190 191 9.027129 TGTGTTTTACTCGTGCATATTATCTAC 57.973 33.333 0.00 0.00 0.00 2.59
191 192 9.589111 TTGTGTTTTACTCGTGCATATTATCTA 57.411 29.630 0.00 0.00 0.00 1.98
192 193 8.487313 TTGTGTTTTACTCGTGCATATTATCT 57.513 30.769 0.00 0.00 0.00 1.98
193 194 9.549509 TTTTGTGTTTTACTCGTGCATATTATC 57.450 29.630 0.00 0.00 0.00 1.75
194 195 9.900710 TTTTTGTGTTTTACTCGTGCATATTAT 57.099 25.926 0.00 0.00 0.00 1.28
195 196 9.388346 CTTTTTGTGTTTTACTCGTGCATATTA 57.612 29.630 0.00 0.00 0.00 0.98
196 197 7.918562 ACTTTTTGTGTTTTACTCGTGCATATT 59.081 29.630 0.00 0.00 0.00 1.28
197 198 7.422399 ACTTTTTGTGTTTTACTCGTGCATAT 58.578 30.769 0.00 0.00 0.00 1.78
198 199 6.787225 ACTTTTTGTGTTTTACTCGTGCATA 58.213 32.000 0.00 0.00 0.00 3.14
199 200 5.646606 ACTTTTTGTGTTTTACTCGTGCAT 58.353 33.333 0.00 0.00 0.00 3.96
200 201 5.049398 ACTTTTTGTGTTTTACTCGTGCA 57.951 34.783 0.00 0.00 0.00 4.57
201 202 5.343860 ACAACTTTTTGTGTTTTACTCGTGC 59.656 36.000 0.00 0.00 44.66 5.34
202 203 6.921332 ACAACTTTTTGTGTTTTACTCGTG 57.079 33.333 0.00 0.00 44.66 4.35
215 216 3.716601 GATCACCACCCACAACTTTTTG 58.283 45.455 0.00 0.00 38.83 2.44
216 217 2.360801 CGATCACCACCCACAACTTTTT 59.639 45.455 0.00 0.00 0.00 1.94
217 218 1.953686 CGATCACCACCCACAACTTTT 59.046 47.619 0.00 0.00 0.00 2.27
218 219 1.133915 ACGATCACCACCCACAACTTT 60.134 47.619 0.00 0.00 0.00 2.66
219 220 0.472471 ACGATCACCACCCACAACTT 59.528 50.000 0.00 0.00 0.00 2.66
220 221 0.034896 GACGATCACCACCCACAACT 59.965 55.000 0.00 0.00 0.00 3.16
221 222 0.250124 TGACGATCACCACCCACAAC 60.250 55.000 0.00 0.00 0.00 3.32
222 223 0.690192 ATGACGATCACCACCCACAA 59.310 50.000 0.00 0.00 0.00 3.33
223 224 1.562783 TATGACGATCACCACCCACA 58.437 50.000 0.00 0.00 0.00 4.17
224 225 2.872245 CAATATGACGATCACCACCCAC 59.128 50.000 0.00 0.00 0.00 4.61
225 226 2.744823 GCAATATGACGATCACCACCCA 60.745 50.000 0.00 0.00 0.00 4.51
226 227 1.873591 GCAATATGACGATCACCACCC 59.126 52.381 0.00 0.00 0.00 4.61
227 228 2.560504 TGCAATATGACGATCACCACC 58.439 47.619 0.00 0.00 0.00 4.61
228 229 3.809279 TGATGCAATATGACGATCACCAC 59.191 43.478 0.00 0.00 0.00 4.16
229 230 3.809279 GTGATGCAATATGACGATCACCA 59.191 43.478 0.00 0.00 37.86 4.17
230 231 4.395581 GTGATGCAATATGACGATCACC 57.604 45.455 0.00 0.00 37.86 4.02
231 232 3.809279 TGGTGATGCAATATGACGATCAC 59.191 43.478 0.00 0.00 41.39 3.06
232 233 4.070630 TGGTGATGCAATATGACGATCA 57.929 40.909 0.00 0.00 0.00 2.92
233 234 5.388111 CAATGGTGATGCAATATGACGATC 58.612 41.667 0.00 0.00 0.00 3.69
234 235 4.216902 CCAATGGTGATGCAATATGACGAT 59.783 41.667 0.00 0.00 0.00 3.73
235 236 3.565063 CCAATGGTGATGCAATATGACGA 59.435 43.478 0.00 0.00 0.00 4.20
236 237 3.304861 CCCAATGGTGATGCAATATGACG 60.305 47.826 0.00 0.00 0.00 4.35
237 238 3.638160 ACCCAATGGTGATGCAATATGAC 59.362 43.478 0.00 0.00 45.58 3.06
238 239 3.913509 ACCCAATGGTGATGCAATATGA 58.086 40.909 0.00 0.00 45.58 2.15
253 254 2.356135 GATACGAACAGTGCACCCAAT 58.644 47.619 14.63 0.00 0.00 3.16
273 274 2.742372 CTCCAAACGGACAGGCGG 60.742 66.667 0.00 0.00 0.00 6.13
275 276 0.670854 GAGTCTCCAAACGGACAGGC 60.671 60.000 0.00 0.00 35.18 4.85
310 311 4.347583 ACCCAAACCAACATGACATTTGAT 59.652 37.500 0.00 0.00 33.08 2.57
311 312 3.708631 ACCCAAACCAACATGACATTTGA 59.291 39.130 0.00 0.00 33.08 2.69
312 313 4.057432 GACCCAAACCAACATGACATTTG 58.943 43.478 0.00 4.76 0.00 2.32
313 314 3.966665 AGACCCAAACCAACATGACATTT 59.033 39.130 0.00 0.00 0.00 2.32
316 317 2.582052 GAGACCCAAACCAACATGACA 58.418 47.619 0.00 0.00 0.00 3.58
317 318 1.886542 GGAGACCCAAACCAACATGAC 59.113 52.381 0.00 0.00 0.00 3.06
344 346 2.610232 CGCAAAAGCATTAGGCCAACTT 60.610 45.455 5.01 0.00 46.50 2.66
356 358 1.228245 AAGAGCTCCCGCAAAAGCA 60.228 52.632 10.93 0.00 41.06 3.91
365 367 2.147150 GAGTGTCAAACAAGAGCTCCC 58.853 52.381 10.93 0.00 0.00 4.30
366 368 2.805099 CAGAGTGTCAAACAAGAGCTCC 59.195 50.000 10.93 0.00 0.00 4.70
367 369 3.247173 CACAGAGTGTCAAACAAGAGCTC 59.753 47.826 5.27 5.27 0.00 4.09
386 388 2.591429 CAGCCCACTTGACGCACA 60.591 61.111 0.00 0.00 0.00 4.57
459 492 4.336532 AACGTTAATGGAAAGACATCGC 57.663 40.909 0.00 0.00 0.00 4.58
464 497 5.684550 ACTCCAAACGTTAATGGAAAGAC 57.315 39.130 19.55 0.00 44.77 3.01
469 502 7.571080 AAAAACTACTCCAAACGTTAATGGA 57.429 32.000 18.36 18.36 43.32 3.41
675 710 9.532494 TCAGAATTGAAAAATATTCCCTTCTGA 57.468 29.630 18.54 18.54 39.67 3.27
676 711 9.798994 CTCAGAATTGAAAAATATTCCCTTCTG 57.201 33.333 16.06 16.06 37.33 3.02
677 712 8.473219 GCTCAGAATTGAAAAATATTCCCTTCT 58.527 33.333 0.00 0.00 32.43 2.85
678 713 8.253113 TGCTCAGAATTGAAAAATATTCCCTTC 58.747 33.333 0.00 0.00 32.43 3.46
679 714 8.137745 TGCTCAGAATTGAAAAATATTCCCTT 57.862 30.769 0.00 0.00 32.43 3.95
680 715 7.722949 TGCTCAGAATTGAAAAATATTCCCT 57.277 32.000 0.00 0.00 32.43 4.20
732 767 0.620556 AACATCAAGCCGGTGATCCT 59.379 50.000 1.90 0.00 36.04 3.24
747 813 0.537143 TCACGGGCTTTCAGCAACAT 60.537 50.000 0.00 0.00 44.75 2.71
810 876 3.368501 TCTCCTGGGAGGGGGAGG 61.369 72.222 15.66 0.00 46.51 4.30
1114 1189 2.812011 ACGATGGCAAACAAACTACTCC 59.188 45.455 0.00 0.00 0.00 3.85
1120 1196 2.202295 ACACACGATGGCAAACAAAC 57.798 45.000 0.00 0.00 0.00 2.93
1124 1200 1.778591 CGAAAACACACGATGGCAAAC 59.221 47.619 0.00 0.00 0.00 2.93
1128 1204 0.725784 CAGCGAAAACACACGATGGC 60.726 55.000 0.00 0.00 41.18 4.40
1169 1245 3.465403 CCGCTCCACCTCTCCCTG 61.465 72.222 0.00 0.00 0.00 4.45
1345 1421 6.893583 AGCTCCATTATCTACACAAACAGAT 58.106 36.000 0.00 0.00 35.67 2.90
1346 1422 6.299805 AGCTCCATTATCTACACAAACAGA 57.700 37.500 0.00 0.00 0.00 3.41
1357 1433 5.410602 AGAACATCCCTAGCTCCATTATCT 58.589 41.667 0.00 0.00 0.00 1.98
1455 1546 9.559958 CTCATTTAATCTGAATGTTGTACAACC 57.440 33.333 30.68 18.48 40.46 3.77
1495 1586 8.786826 AATCGTGTCCTCTCAATTAATTTGTA 57.213 30.769 0.00 0.00 36.65 2.41
1496 1587 7.687941 AATCGTGTCCTCTCAATTAATTTGT 57.312 32.000 0.00 0.00 36.65 2.83
1516 1607 4.378459 GGAACACTTTCAGTAGGCAAATCG 60.378 45.833 0.00 0.00 32.80 3.34
1523 1614 6.265577 CAAAAACTGGAACACTTTCAGTAGG 58.734 40.000 0.00 0.00 32.80 3.18
1601 1778 4.200092 ACTGAACACCAAGTTTTCCTCTC 58.800 43.478 0.00 0.00 41.51 3.20
1602 1779 4.236527 ACTGAACACCAAGTTTTCCTCT 57.763 40.909 0.00 0.00 41.51 3.69
1603 1780 4.640647 AGAACTGAACACCAAGTTTTCCTC 59.359 41.667 0.00 0.00 41.51 3.71
1664 1842 5.360591 CATGACTAAAATCGACCCTAAGCT 58.639 41.667 0.00 0.00 0.00 3.74
1675 1853 6.272822 AGTTTGCCTTCCATGACTAAAATC 57.727 37.500 0.00 0.00 0.00 2.17
1816 1996 2.498056 CCCCACGCTGCACCTTTTT 61.498 57.895 0.00 0.00 0.00 1.94
1847 2027 4.621991 GGCTCTTTTTCCTCCAGTTTTTC 58.378 43.478 0.00 0.00 0.00 2.29
1893 2073 0.822532 CTCCCATTCCATGCCAGCTC 60.823 60.000 0.00 0.00 0.00 4.09
2035 2215 5.966742 AATGTTTTACCTTCTCTTCAGCC 57.033 39.130 0.00 0.00 0.00 4.85
2059 2240 5.873179 AATAAAAATTTCTCCGCTCGTGA 57.127 34.783 0.00 0.00 0.00 4.35
2230 2412 4.535526 TGCAGAGCATTACACTACTCAA 57.464 40.909 0.00 0.00 31.71 3.02
2249 2431 2.045634 TGACCAGGCTGCAGATGC 60.046 61.111 20.43 2.06 42.50 3.91
2250 2432 0.607217 TTGTGACCAGGCTGCAGATG 60.607 55.000 20.43 15.01 0.00 2.90
2251 2433 0.322277 CTTGTGACCAGGCTGCAGAT 60.322 55.000 20.43 1.05 0.00 2.90
2303 2485 9.408648 AGTATAATACAAAGAAATGGGAACTGG 57.591 33.333 0.00 0.00 0.00 4.00
2480 2672 5.569355 TGGATACCAATATAATGCACCTGG 58.431 41.667 0.00 0.00 0.00 4.45
2518 2710 7.821595 TCATCATTTTGAAACATGAGCAATC 57.178 32.000 0.00 0.00 32.91 2.67
3003 3195 7.524403 TTCATGACTTTGAAGAGCGAAAGCG 62.524 44.000 0.00 0.00 45.23 4.68
3056 3248 4.647424 TCGCAAGCAAAATATTAAGGGG 57.353 40.909 0.00 0.00 37.18 4.79
3169 3362 7.094805 TGTGGAGCAAGAAAACATGATTACTAC 60.095 37.037 0.00 0.00 0.00 2.73
3226 3419 7.701445 ACAATATGCTGCTTCAGAAGATAAAC 58.299 34.615 14.86 0.00 32.44 2.01
3285 3478 1.072173 AGTGCCACTGATAGTGCACAA 59.928 47.619 21.04 0.21 46.13 3.33
3366 3559 9.569074 TTAAGATATGGGGATATGCCTAAACTA 57.431 33.333 13.55 0.00 36.66 2.24
3597 3791 3.059982 CCGTTCTCCTGAGCCACA 58.940 61.111 0.00 0.00 0.00 4.17
3622 3816 3.712016 TGCCTAATTGCCACTTACTGA 57.288 42.857 0.00 0.00 0.00 3.41
3717 3911 4.401519 TGATAGGGTTGGAGAACTTACGAG 59.598 45.833 0.00 0.00 32.15 4.18
4133 4329 2.704464 TGGACTGCTGGATGATTCAG 57.296 50.000 0.00 0.00 35.49 3.02
4236 4432 0.813821 GAATTTCAGCTCCAGTGGCC 59.186 55.000 3.51 0.00 0.00 5.36
4311 4507 6.973006 TTTTTACGTAATTTCTTCAACGGC 57.027 33.333 9.18 0.00 39.57 5.68
4359 4555 1.581934 CACTTCTCGACCAAACTGCA 58.418 50.000 0.00 0.00 0.00 4.41
4398 4594 1.682451 GGCCACCGCAGTATACCTCA 61.682 60.000 0.00 0.00 36.38 3.86
4485 4681 1.518903 AAACGGCAGAAGCAGCTTCC 61.519 55.000 28.34 15.29 40.98 3.46
4500 4696 0.667993 TCAAAGGCTTCCTGCAAACG 59.332 50.000 0.00 0.00 45.15 3.60
4684 4880 7.495606 CAGTAATCATGCCTACAGTATTTCACA 59.504 37.037 6.75 0.00 0.00 3.58
4836 5033 8.170553 CCTTAATAGCACAAATTGAATGTTTGC 58.829 33.333 0.00 0.00 39.55 3.68
4837 5034 9.206870 ACCTTAATAGCACAAATTGAATGTTTG 57.793 29.630 0.00 0.00 41.22 2.93
4838 5035 9.777297 AACCTTAATAGCACAAATTGAATGTTT 57.223 25.926 0.00 0.00 0.00 2.83
4934 5131 7.813148 GCTAGTACATGAAAACAGTACAGAAGA 59.187 37.037 0.00 0.00 40.32 2.87
5081 5284 8.818141 TTATGAGAAATTAATCCAGCGAGTAG 57.182 34.615 0.00 0.00 0.00 2.57
5224 5427 8.110860 TCCTCAAAATCTCATTTAGGTTGTTC 57.889 34.615 0.00 0.00 0.00 3.18
5293 5496 7.020602 CGTGAAGAATTGTTATGCACATGTAA 58.979 34.615 0.00 0.00 34.43 2.41
5426 5629 4.081406 AGTCATTAGTTGCTGCCAATTCA 58.919 39.130 0.00 0.00 32.75 2.57
5553 5756 4.535526 TTAATTTTGGAAGAAGCAGGGC 57.464 40.909 0.00 0.00 0.00 5.19
5746 5955 4.460382 GTCAACCATCCATGTCTTGATTGT 59.540 41.667 0.00 0.00 30.24 2.71
5758 5967 1.537889 ACCCTCCGTCAACCATCCA 60.538 57.895 0.00 0.00 0.00 3.41
5799 6008 2.229792 CTTCTGTTACCTTTGCAGGCA 58.770 47.619 0.00 0.00 45.56 4.75
5822 6031 4.894784 ACAAGAGAAACAAGATAAGCCGA 58.105 39.130 0.00 0.00 0.00 5.54
6104 6313 4.261572 CCACGCTCATTCTTTGGAGAAAAA 60.262 41.667 0.00 0.00 44.61 1.94
6276 6485 6.145371 GCACATACAACAATTCCGTCAAAAAT 59.855 34.615 0.00 0.00 0.00 1.82
6522 6731 9.764363 CTATCCTTCATACTGCTACATTTGTAA 57.236 33.333 0.00 0.00 0.00 2.41
6575 6785 7.715249 AGCTCAAAACTTCTCACTACAATAACA 59.285 33.333 0.00 0.00 0.00 2.41
6578 6788 7.441836 TGAGCTCAAAACTTCTCACTACAATA 58.558 34.615 15.67 0.00 31.35 1.90
6581 6791 5.276461 TGAGCTCAAAACTTCTCACTACA 57.724 39.130 15.67 0.00 31.35 2.74
6614 6824 7.809546 TTACAAACATGTCACATCACCTTAA 57.190 32.000 0.00 0.00 0.00 1.85
6666 6876 2.739379 CTCCGTTCCTCTTCTTCTTTGC 59.261 50.000 0.00 0.00 0.00 3.68
6815 7025 6.481644 GGATTATCAACTTTAGCTGGTCTCTG 59.518 42.308 0.00 0.00 0.00 3.35
6884 7094 2.709475 GCGTGGACGATGATTGGC 59.291 61.111 2.73 0.00 43.02 4.52
6933 7143 1.209019 ACTCATGCTCATGGTCAGGAC 59.791 52.381 9.69 0.00 39.24 3.85
6936 7146 2.681848 GGAAACTCATGCTCATGGTCAG 59.318 50.000 9.69 3.38 39.24 3.51
7024 7234 3.127721 GCTACAATTCCTCAACTTGGAGC 59.872 47.826 3.22 3.22 46.34 4.70
7056 7266 6.074994 GCAGTCGAATTAGTACTACATTTCCG 60.075 42.308 0.91 7.15 0.00 4.30
7110 7320 6.961554 CAGCAAAGTATTGTACCGAGAAATTC 59.038 38.462 0.00 0.00 38.85 2.17
7119 7329 8.702163 AAATTAATGCAGCAAAGTATTGTACC 57.298 30.769 0.00 0.00 38.85 3.34
7126 7336 7.035004 GTGGATGAAATTAATGCAGCAAAGTA 58.965 34.615 0.00 0.00 0.00 2.24
7140 7350 2.799017 TGCTGCTCAGTGGATGAAATT 58.201 42.857 0.00 0.00 37.52 1.82
7156 7366 1.418342 GCGCCATTGAATGCTTGCTG 61.418 55.000 0.00 0.00 0.00 4.41
7157 7367 1.153706 GCGCCATTGAATGCTTGCT 60.154 52.632 0.00 0.00 0.00 3.91
7158 7368 1.143969 GAGCGCCATTGAATGCTTGC 61.144 55.000 2.29 3.25 37.91 4.01
7159 7369 0.454600 AGAGCGCCATTGAATGCTTG 59.545 50.000 2.29 0.00 37.91 4.01
7160 7370 0.737219 GAGAGCGCCATTGAATGCTT 59.263 50.000 2.29 0.00 37.91 3.91
7161 7371 0.107312 AGAGAGCGCCATTGAATGCT 60.107 50.000 2.29 0.00 41.11 3.79
7162 7372 0.737219 AAGAGAGCGCCATTGAATGC 59.263 50.000 2.29 0.00 0.00 3.56
7163 7373 2.286872 AGAAGAGAGCGCCATTGAATG 58.713 47.619 2.29 0.00 0.00 2.67
7164 7374 2.559440 GAGAAGAGAGCGCCATTGAAT 58.441 47.619 2.29 0.00 0.00 2.57
7165 7375 1.406069 GGAGAAGAGAGCGCCATTGAA 60.406 52.381 2.29 0.00 0.00 2.69
7166 7376 0.176680 GGAGAAGAGAGCGCCATTGA 59.823 55.000 2.29 0.00 0.00 2.57
7167 7377 0.177604 AGGAGAAGAGAGCGCCATTG 59.822 55.000 2.29 0.00 0.00 2.82
7256 10467 0.996762 GAGGAGAGGAGGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
7817 11033 2.294078 CCGAGGAGCCCAAAGGAGT 61.294 63.158 0.00 0.00 33.47 3.85
8000 11230 0.390124 AAACGGAGCCGACACAAGTA 59.610 50.000 16.83 0.00 42.83 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.