Multiple sequence alignment - TraesCS7B01G121200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G121200 chr7B 100.000 4517 0 0 1 4517 141798724 141803240 0.000000e+00 8342.0
1 TraesCS7B01G121200 chr7B 78.261 161 27 7 4243 4399 141803122 141802966 3.720000e-16 97.1
2 TraesCS7B01G121200 chr7D 90.929 2271 134 37 1 2240 175919135 175921364 0.000000e+00 2987.0
3 TraesCS7B01G121200 chr7D 94.313 1143 35 18 2755 3893 175921855 175922971 0.000000e+00 1724.0
4 TraesCS7B01G121200 chr7D 94.958 357 18 0 2312 2668 175921359 175921715 1.100000e-155 560.0
5 TraesCS7B01G121200 chr7D 94.704 321 14 2 3890 4210 175922998 175923315 3.140000e-136 496.0
6 TraesCS7B01G121200 chr7D 82.083 240 24 15 1876 2106 562663241 562663470 2.150000e-43 187.0
7 TraesCS7B01G121200 chr7D 81.132 212 28 9 1876 2082 105646330 105646534 4.680000e-35 159.0
8 TraesCS7B01G121200 chr7A 90.204 2011 97 44 1959 3897 178006155 178008137 0.000000e+00 2531.0
9 TraesCS7B01G121200 chr7A 96.596 940 24 4 1027 1961 178005022 178005958 0.000000e+00 1552.0
10 TraesCS7B01G121200 chr7A 89.714 175 13 4 4037 4210 178008422 178008592 7.610000e-53 219.0
11 TraesCS7B01G121200 chr7A 82.160 213 25 10 1876 2082 33330604 33330809 2.160000e-38 171.0
12 TraesCS7B01G121200 chr2A 92.466 292 19 3 2 290 706751089 706751380 9.040000e-112 414.0
13 TraesCS7B01G121200 chr3A 91.873 283 19 3 2 280 498246779 498247061 4.240000e-105 392.0
14 TraesCS7B01G121200 chr3D 91.228 285 21 3 2 282 375210950 375211234 7.090000e-103 385.0
15 TraesCS7B01G121200 chr3D 87.288 118 10 3 761 877 421735562 421735675 3.670000e-26 130.0
16 TraesCS7B01G121200 chr3B 91.197 284 20 4 2 280 489361524 489361807 9.170000e-102 381.0
17 TraesCS7B01G121200 chr3B 85.567 291 33 7 1 282 541207814 541208104 3.420000e-76 296.0
18 TraesCS7B01G121200 chr3B 86.667 135 11 4 761 892 549436687 549436817 4.710000e-30 143.0
19 TraesCS7B01G121200 chr3B 85.437 103 11 3 821 920 86408256 86408155 2.220000e-18 104.0
20 TraesCS7B01G121200 chr1B 88.276 290 17 5 1 287 429583937 429584212 9.370000e-87 331.0
21 TraesCS7B01G121200 chr1A 87.931 290 19 4 1 287 398448383 398448659 1.210000e-85 327.0
22 TraesCS7B01G121200 chr1A 83.077 195 22 9 1882 2072 504271830 504271643 2.800000e-37 167.0
23 TraesCS7B01G121200 chr1D 87.586 290 20 6 1 287 317427269 317427545 5.640000e-84 322.0
24 TraesCS7B01G121200 chr6A 81.221 213 26 11 1876 2082 615001401 615001197 4.680000e-35 159.0
25 TraesCS7B01G121200 chr4A 76.323 359 39 23 1760 2082 669629785 669630133 2.810000e-32 150.0
26 TraesCS7B01G121200 chr4A 80.189 212 30 9 1876 2082 73968699 73968495 1.010000e-31 148.0
27 TraesCS7B01G121200 chr6B 85.437 103 11 3 821 920 405754349 405754248 2.220000e-18 104.0
28 TraesCS7B01G121200 chr6B 85.437 103 11 3 821 920 405799746 405799645 2.220000e-18 104.0
29 TraesCS7B01G121200 chr2B 85.437 103 11 3 821 920 10447226 10447125 2.220000e-18 104.0
30 TraesCS7B01G121200 chrUn 84.466 103 12 3 821 920 219171335 219171436 1.030000e-16 99.0
31 TraesCS7B01G121200 chrUn 84.466 103 12 3 821 920 224097050 224096949 1.030000e-16 99.0
32 TraesCS7B01G121200 chrUn 89.610 77 8 0 774 850 224097121 224097045 1.030000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G121200 chr7B 141798724 141803240 4516 False 8342.00 8342 100.000000 1 4517 1 chr7B.!!$F1 4516
1 TraesCS7B01G121200 chr7D 175919135 175923315 4180 False 1441.75 2987 93.726000 1 4210 4 chr7D.!!$F3 4209
2 TraesCS7B01G121200 chr7A 178005022 178008592 3570 False 1434.00 2531 92.171333 1027 4210 3 chr7A.!!$F2 3183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 305 0.036732 CCAGTGGAAGCACTAGCCAA 59.963 55.000 1.68 0.0 43.56 4.52 F
979 982 0.250338 AGGTTCTCTCCGCCAACAAC 60.250 55.000 0.00 0.0 0.00 3.32 F
988 991 1.010125 CGCCAACAACGAACCACTG 60.010 57.895 0.00 0.0 0.00 3.66 F
1002 1005 1.065764 CACTGCGCCGCTATACTCA 59.934 57.895 11.67 0.0 0.00 3.41 F
3165 3533 0.462047 GCCATTATCGCCTATCGGGG 60.462 60.000 0.00 0.0 44.21 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 1987 1.153647 CGCTGACACCGCTCCAATA 60.154 57.895 0.00 0.00 0.0 1.90 R
2902 3264 0.780002 GTTGACTGCATGCAAAAGCG 59.220 50.000 22.88 12.11 0.0 4.68 R
2917 3279 8.665643 AAGCAGAATTTGATGATTTTTGTTGA 57.334 26.923 0.00 0.00 0.0 3.18 R
3265 3633 1.468506 TAGCTTCCACTGCACCGTCA 61.469 55.000 0.00 0.00 0.0 4.35 R
4399 5010 0.032952 GCAGTGAGACGGTTGGTGTA 59.967 55.000 0.00 0.00 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 188 6.994421 TGCCTGTAAGACCATATTGATCTA 57.006 37.500 0.00 0.00 34.07 1.98
189 191 8.097038 TGCCTGTAAGACCATATTGATCTATTC 58.903 37.037 0.00 0.00 34.07 1.75
227 229 9.533253 GCTAAATTAATTAGAATGTTGGCATGT 57.467 29.630 0.01 0.00 43.16 3.21
287 289 5.649395 TGTTTTGAAATCCTAGATCAGCCAG 59.351 40.000 0.00 0.00 0.00 4.85
303 305 0.036732 CCAGTGGAAGCACTAGCCAA 59.963 55.000 1.68 0.00 43.56 4.52
344 346 4.036852 TGATCATCACATCCGACTAGTGTC 59.963 45.833 0.00 0.00 39.70 3.67
508 510 5.621197 TGCATAGTTGTTGGATGTGTAAC 57.379 39.130 0.00 0.00 37.35 2.50
624 626 5.746307 AACATAGTAATGTCAGCAGCATG 57.254 39.130 0.00 0.00 45.79 4.06
663 665 6.629128 TCAGTTGTTTACAATGCATATTGGG 58.371 36.000 0.00 0.00 46.33 4.12
725 727 8.925161 TTTTATATAAAGCATTGTGACTTGCC 57.075 30.769 7.91 0.00 39.72 4.52
852 854 1.978580 TCTTCTCCCAGGTTGAAGGTC 59.021 52.381 14.98 0.00 38.10 3.85
860 862 2.821969 CCAGGTTGAAGGTCATTCTTGG 59.178 50.000 0.00 0.00 38.83 3.61
901 903 5.995565 AAGTACTGCTGTCCTGTTGTATA 57.004 39.130 0.00 0.00 0.00 1.47
902 904 5.326200 AGTACTGCTGTCCTGTTGTATAC 57.674 43.478 0.00 0.00 0.00 1.47
952 955 9.875708 AGTATATATTTTTCCCATGCTTGGTAA 57.124 29.630 16.81 5.22 41.91 2.85
970 973 0.547954 AACTCCCCCAGGTTCTCTCC 60.548 60.000 0.00 0.00 0.00 3.71
979 982 0.250338 AGGTTCTCTCCGCCAACAAC 60.250 55.000 0.00 0.00 0.00 3.32
985 988 1.890041 CTCCGCCAACAACGAACCA 60.890 57.895 0.00 0.00 0.00 3.67
988 991 1.010125 CGCCAACAACGAACCACTG 60.010 57.895 0.00 0.00 0.00 3.66
992 995 2.830285 AACAACGAACCACTGCGCC 61.830 57.895 4.18 0.00 0.00 6.53
1001 1004 1.661821 CCACTGCGCCGCTATACTC 60.662 63.158 11.67 0.00 0.00 2.59
1002 1005 1.065764 CACTGCGCCGCTATACTCA 59.934 57.895 11.67 0.00 0.00 3.41
1022 1025 1.850345 ACTTGGACCCCTTGTTTCTGA 59.150 47.619 0.00 0.00 0.00 3.27
1106 1109 2.060383 CCGATCTGCCTCCACCTCA 61.060 63.158 0.00 0.00 0.00 3.86
1230 1233 1.271707 TGGAACCTTTCGGGATTCCAC 60.272 52.381 4.80 0.00 43.53 4.02
1383 1386 1.592400 CCTGCGGTCGACTACTTCCA 61.592 60.000 16.46 3.27 0.00 3.53
1413 1416 1.339151 CCTGTGAGTAGCAACCTTCCC 60.339 57.143 0.00 0.00 0.00 3.97
1425 1428 1.073098 ACCTTCCCGAACCTTCCATT 58.927 50.000 0.00 0.00 0.00 3.16
1468 1471 5.045872 GCAATCAGACCATATTTGCCTTTC 58.954 41.667 0.00 0.00 37.34 2.62
1564 1568 3.702548 TGCATCTGGTGTACCGTACTTAT 59.297 43.478 10.03 0.00 39.43 1.73
1565 1569 4.888823 TGCATCTGGTGTACCGTACTTATA 59.111 41.667 10.03 0.00 39.43 0.98
1643 1647 3.526534 GAGATGTGGCTGGTACTCTTTC 58.473 50.000 0.00 0.00 0.00 2.62
1673 1677 3.247411 CGTGTTCGCCATATATCAGCAAA 59.753 43.478 5.38 0.00 0.00 3.68
1823 1832 5.506730 TGGACTTGGATTTGTATGGTGTA 57.493 39.130 0.00 0.00 0.00 2.90
2070 2303 1.603802 CGTGTGTGATTGCTTGTCCTT 59.396 47.619 0.00 0.00 0.00 3.36
2127 2360 2.034687 AGCCGCTCCATGCACTTT 59.965 55.556 0.00 0.00 43.06 2.66
2208 2441 8.023706 TGCTCACGTCTTAGTAATCATATCATC 58.976 37.037 0.00 0.00 0.00 2.92
2220 2453 8.975295 AGTAATCATATCATCGATTCATCTCCA 58.025 33.333 0.00 0.00 33.90 3.86
2234 2467 8.834465 CGATTCATCTCCATTAAACTGATTTCT 58.166 33.333 0.00 0.00 0.00 2.52
2237 2470 9.519191 TTCATCTCCATTAAACTGATTTCTTGA 57.481 29.630 0.00 0.00 0.00 3.02
2238 2471 9.519191 TCATCTCCATTAAACTGATTTCTTGAA 57.481 29.630 0.00 0.00 0.00 2.69
2241 2474 9.573166 TCTCCATTAAACTGATTTCTTGAAAGA 57.427 29.630 2.25 0.00 0.00 2.52
2244 2477 9.578439 CCATTAAACTGATTTCTTGAAAGATCC 57.422 33.333 2.25 0.00 34.49 3.36
2249 2482 8.924511 AACTGATTTCTTGAAAGATCCTAACA 57.075 30.769 2.25 0.00 34.49 2.41
2250 2483 9.525826 AACTGATTTCTTGAAAGATCCTAACAT 57.474 29.630 2.25 0.00 34.49 2.71
2251 2484 9.525826 ACTGATTTCTTGAAAGATCCTAACATT 57.474 29.630 2.25 0.00 34.49 2.71
2252 2485 9.784680 CTGATTTCTTGAAAGATCCTAACATTG 57.215 33.333 2.25 0.00 34.49 2.82
2253 2486 8.246180 TGATTTCTTGAAAGATCCTAACATTGC 58.754 33.333 2.25 0.00 34.49 3.56
2254 2487 7.523293 TTTCTTGAAAGATCCTAACATTGCA 57.477 32.000 0.00 0.00 34.49 4.08
2255 2488 7.523293 TTCTTGAAAGATCCTAACATTGCAA 57.477 32.000 0.00 0.00 34.49 4.08
2256 2489 7.523293 TCTTGAAAGATCCTAACATTGCAAA 57.477 32.000 1.71 0.00 0.00 3.68
2257 2490 7.370383 TCTTGAAAGATCCTAACATTGCAAAC 58.630 34.615 1.71 0.00 0.00 2.93
2258 2491 6.024552 TGAAAGATCCTAACATTGCAAACC 57.975 37.500 1.71 0.00 0.00 3.27
2259 2492 5.774690 TGAAAGATCCTAACATTGCAAACCT 59.225 36.000 1.71 0.00 0.00 3.50
2260 2493 6.267471 TGAAAGATCCTAACATTGCAAACCTT 59.733 34.615 1.71 0.00 0.00 3.50
2261 2494 5.649782 AGATCCTAACATTGCAAACCTTG 57.350 39.130 1.71 0.00 0.00 3.61
2262 2495 5.079643 AGATCCTAACATTGCAAACCTTGT 58.920 37.500 1.71 0.00 0.00 3.16
2263 2496 5.539955 AGATCCTAACATTGCAAACCTTGTT 59.460 36.000 17.56 17.56 36.37 2.83
2264 2497 5.195001 TCCTAACATTGCAAACCTTGTTC 57.805 39.130 17.08 0.00 34.39 3.18
2265 2498 4.646945 TCCTAACATTGCAAACCTTGTTCA 59.353 37.500 17.08 6.19 34.39 3.18
2266 2499 5.304101 TCCTAACATTGCAAACCTTGTTCAT 59.696 36.000 17.08 0.24 34.39 2.57
2267 2500 5.990996 CCTAACATTGCAAACCTTGTTCATT 59.009 36.000 17.08 0.00 34.39 2.57
2268 2501 5.989551 AACATTGCAAACCTTGTTCATTC 57.010 34.783 1.71 0.00 0.00 2.67
2269 2502 5.280654 ACATTGCAAACCTTGTTCATTCT 57.719 34.783 1.71 0.00 0.00 2.40
2270 2503 6.403866 ACATTGCAAACCTTGTTCATTCTA 57.596 33.333 1.71 0.00 0.00 2.10
2271 2504 6.449698 ACATTGCAAACCTTGTTCATTCTAG 58.550 36.000 1.71 0.00 0.00 2.43
2272 2505 6.040842 ACATTGCAAACCTTGTTCATTCTAGT 59.959 34.615 1.71 0.00 0.00 2.57
2273 2506 7.230510 ACATTGCAAACCTTGTTCATTCTAGTA 59.769 33.333 1.71 0.00 0.00 1.82
2274 2507 7.759489 TTGCAAACCTTGTTCATTCTAGTAT 57.241 32.000 0.00 0.00 0.00 2.12
2275 2508 8.856153 TTGCAAACCTTGTTCATTCTAGTATA 57.144 30.769 0.00 0.00 0.00 1.47
2276 2509 8.492673 TGCAAACCTTGTTCATTCTAGTATAG 57.507 34.615 0.00 0.00 41.04 1.31
2277 2510 8.100791 TGCAAACCTTGTTCATTCTAGTATAGT 58.899 33.333 0.00 0.00 40.38 2.12
2278 2511 9.595823 GCAAACCTTGTTCATTCTAGTATAGTA 57.404 33.333 0.00 0.00 40.38 1.82
2283 2516 9.530633 CCTTGTTCATTCTAGTATAGTAACACC 57.469 37.037 0.00 0.00 40.38 4.16
2284 2517 9.530633 CTTGTTCATTCTAGTATAGTAACACCC 57.469 37.037 0.00 0.00 40.38 4.61
2285 2518 8.834004 TGTTCATTCTAGTATAGTAACACCCT 57.166 34.615 0.00 0.00 40.38 4.34
2286 2519 9.925545 TGTTCATTCTAGTATAGTAACACCCTA 57.074 33.333 0.00 0.00 40.38 3.53
2288 2521 8.613060 TCATTCTAGTATAGTAACACCCTACG 57.387 38.462 0.00 0.00 40.38 3.51
2289 2522 7.663081 TCATTCTAGTATAGTAACACCCTACGG 59.337 40.741 0.00 0.00 40.38 4.02
2290 2523 5.308825 TCTAGTATAGTAACACCCTACGGC 58.691 45.833 0.00 0.00 40.38 5.68
2291 2524 4.176120 AGTATAGTAACACCCTACGGCT 57.824 45.455 0.00 0.00 0.00 5.52
2292 2525 4.540715 AGTATAGTAACACCCTACGGCTT 58.459 43.478 0.00 0.00 0.00 4.35
2293 2526 5.694995 AGTATAGTAACACCCTACGGCTTA 58.305 41.667 0.00 0.00 0.00 3.09
2294 2527 6.129179 AGTATAGTAACACCCTACGGCTTAA 58.871 40.000 0.00 0.00 0.00 1.85
2295 2528 5.937975 ATAGTAACACCCTACGGCTTAAA 57.062 39.130 0.00 0.00 0.00 1.52
2296 2529 3.930336 AGTAACACCCTACGGCTTAAAC 58.070 45.455 0.00 0.00 0.00 2.01
2297 2530 2.934886 AACACCCTACGGCTTAAACA 57.065 45.000 0.00 0.00 0.00 2.83
2298 2531 3.428413 AACACCCTACGGCTTAAACAT 57.572 42.857 0.00 0.00 0.00 2.71
2299 2532 4.556592 AACACCCTACGGCTTAAACATA 57.443 40.909 0.00 0.00 0.00 2.29
2300 2533 4.765813 ACACCCTACGGCTTAAACATAT 57.234 40.909 0.00 0.00 0.00 1.78
2301 2534 5.874897 ACACCCTACGGCTTAAACATATA 57.125 39.130 0.00 0.00 0.00 0.86
2302 2535 5.850614 ACACCCTACGGCTTAAACATATAG 58.149 41.667 0.00 0.00 0.00 1.31
2303 2536 5.599656 ACACCCTACGGCTTAAACATATAGA 59.400 40.000 0.00 0.00 0.00 1.98
2304 2537 6.098695 ACACCCTACGGCTTAAACATATAGAA 59.901 38.462 0.00 0.00 0.00 2.10
2305 2538 6.423001 CACCCTACGGCTTAAACATATAGAAC 59.577 42.308 0.00 0.00 0.00 3.01
2306 2539 6.098695 ACCCTACGGCTTAAACATATAGAACA 59.901 38.462 0.00 0.00 0.00 3.18
2307 2540 6.645415 CCCTACGGCTTAAACATATAGAACAG 59.355 42.308 0.00 0.00 0.00 3.16
2308 2541 7.208080 CCTACGGCTTAAACATATAGAACAGT 58.792 38.462 0.00 0.00 0.00 3.55
2309 2542 6.903883 ACGGCTTAAACATATAGAACAGTG 57.096 37.500 0.00 0.00 0.00 3.66
2310 2543 5.815740 ACGGCTTAAACATATAGAACAGTGG 59.184 40.000 0.00 0.00 0.00 4.00
2435 2744 6.656693 ACCTTGTTCATTCTAAATCAGAGGTG 59.343 38.462 0.00 0.00 33.83 4.00
2487 2796 5.921962 ATTCCCATTTTAGTTTGAGCCTC 57.078 39.130 0.00 0.00 0.00 4.70
2643 2952 4.703897 CTCCAGTGGTGTTCTTAAGTTCA 58.296 43.478 9.54 0.62 0.00 3.18
2688 3015 5.682862 CCATAAAAGCTTGACGTAATGATGC 59.317 40.000 0.00 0.00 0.00 3.91
2689 3016 4.764679 AAAAGCTTGACGTAATGATGCA 57.235 36.364 0.00 0.00 0.00 3.96
2760 3118 8.752766 TTTCTTCCGTTGACTTACATAAGTAG 57.247 34.615 4.28 0.00 45.84 2.57
2902 3264 5.577100 AGGTAAAACAATCTCCCCCTTTAC 58.423 41.667 0.00 0.00 0.00 2.01
2969 3331 7.878127 TCATATAGTTTACTTCCAATAGCTGCC 59.122 37.037 0.00 0.00 0.00 4.85
3155 3523 9.541724 GTACATTATTACACAATGCCATTATCG 57.458 33.333 0.00 0.00 36.96 2.92
3165 3533 0.462047 GCCATTATCGCCTATCGGGG 60.462 60.000 0.00 0.00 44.21 5.73
3265 3633 1.872653 GCGTTCGACAAGAGGGACTTT 60.873 52.381 0.00 0.00 41.55 2.66
3440 3809 0.877071 GTCTGGTGGCTGACATGTTG 59.123 55.000 0.00 0.00 33.75 3.33
3493 3873 1.562575 GGTCGTACCACGCAGTTTGG 61.563 60.000 0.00 0.00 41.61 3.28
3774 4187 3.582780 CCTGAAGCCTGAAAGAAAATGC 58.417 45.455 0.00 0.00 34.07 3.56
3805 4234 2.402572 GCTTGAGCCCGAAAGCCTC 61.403 63.158 0.00 0.00 42.40 4.70
3854 4283 1.091771 CACATGTAAGCCCAGCTCCG 61.092 60.000 0.00 0.00 38.25 4.63
3863 4292 1.078848 CCCAGCTCCGAAACCTGAG 60.079 63.158 0.00 0.00 0.00 3.35
3907 4401 4.479993 AGCCTGGGCATGACTCGC 62.480 66.667 14.39 0.00 44.88 5.03
3957 4474 3.042887 GGTTGTCGAAGAACATGTTTGC 58.957 45.455 13.36 0.37 39.69 3.68
3989 4506 6.015095 TCGGTAATCACTGCAAGATCTATCAT 60.015 38.462 0.00 0.00 37.43 2.45
4031 4548 6.212388 TCTGAGAAACTTAGCTCAAGGAGAAT 59.788 38.462 0.00 0.00 40.33 2.40
4052 4663 6.883217 AGAATAATGCGCCATTAGAGATGAAT 59.117 34.615 4.18 0.00 39.28 2.57
4053 4664 7.392673 AGAATAATGCGCCATTAGAGATGAATT 59.607 33.333 4.18 0.00 39.28 2.17
4073 4684 8.789825 TGAATTTTGGATTTATGATGGTTTGG 57.210 30.769 0.00 0.00 0.00 3.28
4100 4711 5.305585 TGGGTAAACAAATCACTCTGTCTC 58.694 41.667 0.00 0.00 0.00 3.36
4142 4753 9.672086 TTACAATTCCTCGAAAACATTTACTTG 57.328 29.630 0.00 0.00 0.00 3.16
4190 4801 5.384063 TTCTTCACTCTGTCATCTCTGTC 57.616 43.478 0.00 0.00 0.00 3.51
4214 4825 7.496529 CACTTCTGTGAAGACTTATCCAAAA 57.503 36.000 13.42 0.00 46.55 2.44
4215 4826 8.103948 CACTTCTGTGAAGACTTATCCAAAAT 57.896 34.615 13.42 0.00 46.55 1.82
4216 4827 8.571336 CACTTCTGTGAAGACTTATCCAAAATT 58.429 33.333 13.42 0.00 46.55 1.82
4217 4828 8.787852 ACTTCTGTGAAGACTTATCCAAAATTC 58.212 33.333 13.42 0.00 0.00 2.17
4218 4829 8.690203 TTCTGTGAAGACTTATCCAAAATTCA 57.310 30.769 0.00 0.00 0.00 2.57
4219 4830 8.690203 TCTGTGAAGACTTATCCAAAATTCAA 57.310 30.769 0.00 0.00 0.00 2.69
4220 4831 9.130661 TCTGTGAAGACTTATCCAAAATTCAAA 57.869 29.630 0.00 0.00 0.00 2.69
4221 4832 9.185192 CTGTGAAGACTTATCCAAAATTCAAAC 57.815 33.333 0.00 0.00 0.00 2.93
4222 4833 8.690884 TGTGAAGACTTATCCAAAATTCAAACA 58.309 29.630 0.00 0.00 0.00 2.83
4223 4834 8.968242 GTGAAGACTTATCCAAAATTCAAACAC 58.032 33.333 0.00 0.00 0.00 3.32
4224 4835 8.690884 TGAAGACTTATCCAAAATTCAAACACA 58.309 29.630 0.00 0.00 0.00 3.72
4225 4836 9.528018 GAAGACTTATCCAAAATTCAAACACAA 57.472 29.630 0.00 0.00 0.00 3.33
4226 4837 8.871686 AGACTTATCCAAAATTCAAACACAAC 57.128 30.769 0.00 0.00 0.00 3.32
4227 4838 8.474025 AGACTTATCCAAAATTCAAACACAACA 58.526 29.630 0.00 0.00 0.00 3.33
4228 4839 9.092876 GACTTATCCAAAATTCAAACACAACAA 57.907 29.630 0.00 0.00 0.00 2.83
4229 4840 9.442047 ACTTATCCAAAATTCAAACACAACAAA 57.558 25.926 0.00 0.00 0.00 2.83
4233 4844 9.786105 ATCCAAAATTCAAACACAACAAAATTC 57.214 25.926 0.00 0.00 0.00 2.17
4234 4845 8.786898 TCCAAAATTCAAACACAACAAAATTCA 58.213 25.926 0.00 0.00 0.00 2.57
4235 4846 9.403110 CCAAAATTCAAACACAACAAAATTCAA 57.597 25.926 0.00 0.00 0.00 2.69
4238 4849 8.962857 AATTCAAACACAACAAAATTCAAACC 57.037 26.923 0.00 0.00 0.00 3.27
4239 4850 7.496529 TTCAAACACAACAAAATTCAAACCA 57.503 28.000 0.00 0.00 0.00 3.67
4240 4851 7.496529 TCAAACACAACAAAATTCAAACCAA 57.503 28.000 0.00 0.00 0.00 3.67
4241 4852 8.103948 TCAAACACAACAAAATTCAAACCAAT 57.896 26.923 0.00 0.00 0.00 3.16
4242 4853 8.571336 TCAAACACAACAAAATTCAAACCAATT 58.429 25.926 0.00 0.00 0.00 2.32
4243 4854 8.636843 CAAACACAACAAAATTCAAACCAATTG 58.363 29.630 0.00 0.00 40.58 2.32
4244 4855 7.446001 ACACAACAAAATTCAAACCAATTGT 57.554 28.000 4.43 0.00 40.11 2.71
4245 4856 7.880105 ACACAACAAAATTCAAACCAATTGTT 58.120 26.923 4.43 0.00 40.49 2.83
4258 4869 3.029320 CAATTGTTGGATGGTGTGGTG 57.971 47.619 0.00 0.00 0.00 4.17
4259 4870 1.631405 ATTGTTGGATGGTGTGGTGG 58.369 50.000 0.00 0.00 0.00 4.61
4260 4871 0.260230 TTGTTGGATGGTGTGGTGGT 59.740 50.000 0.00 0.00 0.00 4.16
4261 4872 0.260230 TGTTGGATGGTGTGGTGGTT 59.740 50.000 0.00 0.00 0.00 3.67
4262 4873 0.673437 GTTGGATGGTGTGGTGGTTG 59.327 55.000 0.00 0.00 0.00 3.77
4263 4874 0.260230 TTGGATGGTGTGGTGGTTGT 59.740 50.000 0.00 0.00 0.00 3.32
4264 4875 0.179004 TGGATGGTGTGGTGGTTGTC 60.179 55.000 0.00 0.00 0.00 3.18
4265 4876 0.179004 GGATGGTGTGGTGGTTGTCA 60.179 55.000 0.00 0.00 0.00 3.58
4266 4877 1.238439 GATGGTGTGGTGGTTGTCAG 58.762 55.000 0.00 0.00 0.00 3.51
4267 4878 0.843309 ATGGTGTGGTGGTTGTCAGA 59.157 50.000 0.00 0.00 0.00 3.27
4268 4879 0.843309 TGGTGTGGTGGTTGTCAGAT 59.157 50.000 0.00 0.00 0.00 2.90
4269 4880 1.238439 GGTGTGGTGGTTGTCAGATG 58.762 55.000 0.00 0.00 0.00 2.90
4270 4881 1.238439 GTGTGGTGGTTGTCAGATGG 58.762 55.000 0.00 0.00 0.00 3.51
4271 4882 0.843309 TGTGGTGGTTGTCAGATGGT 59.157 50.000 0.00 0.00 0.00 3.55
4272 4883 1.214175 TGTGGTGGTTGTCAGATGGTT 59.786 47.619 0.00 0.00 0.00 3.67
4273 4884 2.439880 TGTGGTGGTTGTCAGATGGTTA 59.560 45.455 0.00 0.00 0.00 2.85
4274 4885 3.117851 TGTGGTGGTTGTCAGATGGTTAA 60.118 43.478 0.00 0.00 0.00 2.01
4275 4886 3.886505 GTGGTGGTTGTCAGATGGTTAAA 59.113 43.478 0.00 0.00 0.00 1.52
4276 4887 3.886505 TGGTGGTTGTCAGATGGTTAAAC 59.113 43.478 0.00 0.00 0.00 2.01
4277 4888 3.254903 GGTGGTTGTCAGATGGTTAAACC 59.745 47.826 0.00 0.00 39.22 3.27
4293 4904 6.617879 GGTTAAACCAAATCACATAGACACC 58.382 40.000 0.00 0.00 38.42 4.16
4294 4905 6.349860 GGTTAAACCAAATCACATAGACACCC 60.350 42.308 0.00 0.00 38.42 4.61
4295 4906 3.366052 ACCAAATCACATAGACACCCC 57.634 47.619 0.00 0.00 0.00 4.95
4296 4907 2.025321 ACCAAATCACATAGACACCCCC 60.025 50.000 0.00 0.00 0.00 5.40
4297 4908 2.242196 CCAAATCACATAGACACCCCCT 59.758 50.000 0.00 0.00 0.00 4.79
4298 4909 3.545703 CAAATCACATAGACACCCCCTC 58.454 50.000 0.00 0.00 0.00 4.30
4299 4910 2.877154 ATCACATAGACACCCCCTCT 57.123 50.000 0.00 0.00 0.00 3.69
4300 4911 3.993658 ATCACATAGACACCCCCTCTA 57.006 47.619 0.00 0.00 0.00 2.43
4301 4912 3.769189 TCACATAGACACCCCCTCTAA 57.231 47.619 0.00 0.00 0.00 2.10
4302 4913 4.280789 TCACATAGACACCCCCTCTAAT 57.719 45.455 0.00 0.00 0.00 1.73
4303 4914 4.223953 TCACATAGACACCCCCTCTAATC 58.776 47.826 0.00 0.00 0.00 1.75
4304 4915 3.005897 CACATAGACACCCCCTCTAATCG 59.994 52.174 0.00 0.00 0.00 3.34
4305 4916 3.231818 CATAGACACCCCCTCTAATCGT 58.768 50.000 0.00 0.00 0.00 3.73
4306 4917 4.141088 ACATAGACACCCCCTCTAATCGTA 60.141 45.833 0.00 0.00 0.00 3.43
4307 4918 3.614568 AGACACCCCCTCTAATCGTAT 57.385 47.619 0.00 0.00 0.00 3.06
4308 4919 4.736611 AGACACCCCCTCTAATCGTATA 57.263 45.455 0.00 0.00 0.00 1.47
4309 4920 4.405548 AGACACCCCCTCTAATCGTATAC 58.594 47.826 0.00 0.00 0.00 1.47
4310 4921 4.106019 AGACACCCCCTCTAATCGTATACT 59.894 45.833 0.56 0.00 0.00 2.12
4311 4922 4.812653 ACACCCCCTCTAATCGTATACTT 58.187 43.478 0.56 0.00 0.00 2.24
4312 4923 5.214293 ACACCCCCTCTAATCGTATACTTT 58.786 41.667 0.56 0.00 0.00 2.66
4313 4924 5.070047 ACACCCCCTCTAATCGTATACTTTG 59.930 44.000 0.56 0.00 0.00 2.77
4314 4925 5.303589 CACCCCCTCTAATCGTATACTTTGA 59.696 44.000 0.56 0.00 0.00 2.69
4315 4926 5.901276 ACCCCCTCTAATCGTATACTTTGAA 59.099 40.000 0.56 0.00 0.00 2.69
4316 4927 6.183360 ACCCCCTCTAATCGTATACTTTGAAC 60.183 42.308 0.56 0.00 0.00 3.18
4317 4928 6.221659 CCCCTCTAATCGTATACTTTGAACC 58.778 44.000 0.56 0.00 0.00 3.62
4318 4929 6.041751 CCCCTCTAATCGTATACTTTGAACCT 59.958 42.308 0.56 0.00 0.00 3.50
4319 4930 7.232127 CCCCTCTAATCGTATACTTTGAACCTA 59.768 40.741 0.56 0.00 0.00 3.08
4320 4931 8.804204 CCCTCTAATCGTATACTTTGAACCTAT 58.196 37.037 0.56 0.00 0.00 2.57
4333 4944 8.451908 ACTTTGAACCTATAATTGGTATCAGC 57.548 34.615 0.00 0.00 36.69 4.26
4334 4945 7.226720 ACTTTGAACCTATAATTGGTATCAGCG 59.773 37.037 0.00 0.00 36.69 5.18
4335 4946 4.994852 TGAACCTATAATTGGTATCAGCGC 59.005 41.667 0.00 0.00 36.69 5.92
4336 4947 4.617253 ACCTATAATTGGTATCAGCGCA 57.383 40.909 11.47 0.00 35.80 6.09
4337 4948 4.968259 ACCTATAATTGGTATCAGCGCAA 58.032 39.130 11.47 0.00 35.80 4.85
4338 4949 4.997395 ACCTATAATTGGTATCAGCGCAAG 59.003 41.667 11.47 0.72 35.80 4.01
4339 4950 4.393062 CCTATAATTGGTATCAGCGCAAGG 59.607 45.833 11.47 0.00 38.28 3.61
4340 4951 8.377453 ACCTATAATTGGTATCAGCGCAAGGT 62.377 42.308 11.47 0.00 42.64 3.50
4341 4952 9.100658 ACCTATAATTGGTATCAGCGCAAGGTA 62.101 40.741 11.47 0.00 40.75 3.08
4363 4974 9.003658 AGGTACTTTCTTTGTCTATGTGATTTG 57.996 33.333 0.00 0.00 27.25 2.32
4364 4975 8.237267 GGTACTTTCTTTGTCTATGTGATTTGG 58.763 37.037 0.00 0.00 0.00 3.28
4365 4976 7.823745 ACTTTCTTTGTCTATGTGATTTGGT 57.176 32.000 0.00 0.00 0.00 3.67
4366 4977 8.237811 ACTTTCTTTGTCTATGTGATTTGGTT 57.762 30.769 0.00 0.00 0.00 3.67
4367 4978 8.695456 ACTTTCTTTGTCTATGTGATTTGGTTT 58.305 29.630 0.00 0.00 0.00 3.27
4370 4981 9.959749 TTCTTTGTCTATGTGATTTGGTTTAAC 57.040 29.630 0.00 0.00 0.00 2.01
4371 4982 8.573035 TCTTTGTCTATGTGATTTGGTTTAACC 58.427 33.333 7.27 7.27 39.22 2.85
4383 4994 4.171878 TGGTTTAACCATCTGACAACCA 57.828 40.909 13.44 0.00 44.79 3.67
4384 4995 3.886505 TGGTTTAACCATCTGACAACCAC 59.113 43.478 13.44 0.00 44.79 4.16
4385 4996 3.254903 GGTTTAACCATCTGACAACCACC 59.745 47.826 9.56 0.00 38.42 4.61
4386 4997 3.866703 TTAACCATCTGACAACCACCA 57.133 42.857 0.00 0.00 0.00 4.17
4387 4998 1.981256 AACCATCTGACAACCACCAC 58.019 50.000 0.00 0.00 0.00 4.16
4388 4999 0.843309 ACCATCTGACAACCACCACA 59.157 50.000 0.00 0.00 0.00 4.17
4389 5000 1.238439 CCATCTGACAACCACCACAC 58.762 55.000 0.00 0.00 0.00 3.82
4390 5001 1.238439 CATCTGACAACCACCACACC 58.762 55.000 0.00 0.00 0.00 4.16
4391 5002 0.843309 ATCTGACAACCACCACACCA 59.157 50.000 0.00 0.00 0.00 4.17
4392 5003 0.843309 TCTGACAACCACCACACCAT 59.157 50.000 0.00 0.00 0.00 3.55
4393 5004 1.202758 TCTGACAACCACCACACCATC 60.203 52.381 0.00 0.00 0.00 3.51
4394 5005 0.179004 TGACAACCACCACACCATCC 60.179 55.000 0.00 0.00 0.00 3.51
4395 5006 1.228124 ACAACCACCACACCATCCG 60.228 57.895 0.00 0.00 0.00 4.18
4396 5007 1.072332 CAACCACCACACCATCCGA 59.928 57.895 0.00 0.00 0.00 4.55
4397 5008 1.072505 AACCACCACACCATCCGAC 59.927 57.895 0.00 0.00 0.00 4.79
4398 5009 1.701031 AACCACCACACCATCCGACA 61.701 55.000 0.00 0.00 0.00 4.35
4399 5010 1.299648 CCACCACACCATCCGACAT 59.700 57.895 0.00 0.00 0.00 3.06
4400 5011 0.539518 CCACCACACCATCCGACATA 59.460 55.000 0.00 0.00 0.00 2.29
4401 5012 1.651987 CACCACACCATCCGACATAC 58.348 55.000 0.00 0.00 0.00 2.39
4402 5013 1.066502 CACCACACCATCCGACATACA 60.067 52.381 0.00 0.00 0.00 2.29
4403 5014 1.066430 ACCACACCATCCGACATACAC 60.066 52.381 0.00 0.00 0.00 2.90
4404 5015 1.651987 CACACCATCCGACATACACC 58.348 55.000 0.00 0.00 0.00 4.16
4405 5016 1.066502 CACACCATCCGACATACACCA 60.067 52.381 0.00 0.00 0.00 4.17
4406 5017 1.626321 ACACCATCCGACATACACCAA 59.374 47.619 0.00 0.00 0.00 3.67
4407 5018 2.006888 CACCATCCGACATACACCAAC 58.993 52.381 0.00 0.00 0.00 3.77
4408 5019 1.065709 ACCATCCGACATACACCAACC 60.066 52.381 0.00 0.00 0.00 3.77
4409 5020 1.286501 CATCCGACATACACCAACCG 58.713 55.000 0.00 0.00 0.00 4.44
4410 5021 0.899720 ATCCGACATACACCAACCGT 59.100 50.000 0.00 0.00 0.00 4.83
4411 5022 0.244450 TCCGACATACACCAACCGTC 59.756 55.000 0.00 0.00 0.00 4.79
4412 5023 0.245539 CCGACATACACCAACCGTCT 59.754 55.000 0.00 0.00 0.00 4.18
4413 5024 1.625616 CGACATACACCAACCGTCTC 58.374 55.000 0.00 0.00 0.00 3.36
4414 5025 1.068125 CGACATACACCAACCGTCTCA 60.068 52.381 0.00 0.00 0.00 3.27
4415 5026 2.334838 GACATACACCAACCGTCTCAC 58.665 52.381 0.00 0.00 0.00 3.51
4416 5027 1.968493 ACATACACCAACCGTCTCACT 59.032 47.619 0.00 0.00 0.00 3.41
4417 5028 2.288825 ACATACACCAACCGTCTCACTG 60.289 50.000 0.00 0.00 0.00 3.66
4418 5029 0.032952 TACACCAACCGTCTCACTGC 59.967 55.000 0.00 0.00 0.00 4.40
4419 5030 1.069765 CACCAACCGTCTCACTGCT 59.930 57.895 0.00 0.00 0.00 4.24
4420 5031 0.946221 CACCAACCGTCTCACTGCTC 60.946 60.000 0.00 0.00 0.00 4.26
4421 5032 1.734477 CCAACCGTCTCACTGCTCG 60.734 63.158 0.00 0.00 0.00 5.03
4422 5033 2.049063 AACCGTCTCACTGCTCGC 60.049 61.111 0.00 0.00 0.00 5.03
4423 5034 3.575351 AACCGTCTCACTGCTCGCC 62.575 63.158 0.00 0.00 0.00 5.54
4425 5036 4.406173 CGTCTCACTGCTCGCCGT 62.406 66.667 0.00 0.00 0.00 5.68
4426 5037 2.505118 GTCTCACTGCTCGCCGTC 60.505 66.667 0.00 0.00 0.00 4.79
4427 5038 3.749064 TCTCACTGCTCGCCGTCC 61.749 66.667 0.00 0.00 0.00 4.79
4428 5039 4.056125 CTCACTGCTCGCCGTCCA 62.056 66.667 0.00 0.00 0.00 4.02
4429 5040 4.357947 TCACTGCTCGCCGTCCAC 62.358 66.667 0.00 0.00 0.00 4.02
4430 5041 4.363990 CACTGCTCGCCGTCCACT 62.364 66.667 0.00 0.00 0.00 4.00
4431 5042 3.616721 ACTGCTCGCCGTCCACTT 61.617 61.111 0.00 0.00 0.00 3.16
4432 5043 3.114616 CTGCTCGCCGTCCACTTG 61.115 66.667 0.00 0.00 0.00 3.16
4433 5044 3.573772 CTGCTCGCCGTCCACTTGA 62.574 63.158 0.00 0.00 0.00 3.02
4434 5045 3.112709 GCTCGCCGTCCACTTGAC 61.113 66.667 0.00 0.00 40.81 3.18
4443 5054 1.949465 GTCCACTTGACGACCAAAGT 58.051 50.000 0.00 0.00 33.49 2.66
4444 5055 1.865340 GTCCACTTGACGACCAAAGTC 59.135 52.381 0.00 0.00 39.83 3.01
4445 5056 1.483004 TCCACTTGACGACCAAAGTCA 59.517 47.619 0.00 0.00 45.68 3.41
4446 5057 2.104111 TCCACTTGACGACCAAAGTCAT 59.896 45.455 0.00 0.00 46.44 3.06
4447 5058 2.224079 CCACTTGACGACCAAAGTCATG 59.776 50.000 9.63 9.63 46.44 3.07
4448 5059 1.873591 ACTTGACGACCAAAGTCATGC 59.126 47.619 10.71 0.00 46.44 4.06
4449 5060 2.146342 CTTGACGACCAAAGTCATGCT 58.854 47.619 0.00 0.00 46.44 3.79
4450 5061 1.795768 TGACGACCAAAGTCATGCTC 58.204 50.000 0.00 0.00 42.91 4.26
4451 5062 0.716108 GACGACCAAAGTCATGCTCG 59.284 55.000 0.00 0.00 43.73 5.03
4452 5063 0.670546 ACGACCAAAGTCATGCTCGG 60.671 55.000 0.00 0.00 43.73 4.63
4453 5064 0.670546 CGACCAAAGTCATGCTCGGT 60.671 55.000 9.47 9.47 43.73 4.69
4454 5065 0.798776 GACCAAAGTCATGCTCGGTG 59.201 55.000 12.68 3.69 42.99 4.94
4455 5066 0.606401 ACCAAAGTCATGCTCGGTGG 60.606 55.000 9.10 9.74 32.72 4.61
4456 5067 1.308069 CCAAAGTCATGCTCGGTGGG 61.308 60.000 0.00 0.00 0.00 4.61
4457 5068 0.606401 CAAAGTCATGCTCGGTGGGT 60.606 55.000 0.00 0.00 0.00 4.51
4458 5069 0.321653 AAAGTCATGCTCGGTGGGTC 60.322 55.000 0.00 0.00 0.00 4.46
4459 5070 1.480212 AAGTCATGCTCGGTGGGTCA 61.480 55.000 0.00 0.00 0.00 4.02
4460 5071 1.741770 GTCATGCTCGGTGGGTCAC 60.742 63.158 0.00 0.00 0.00 3.67
4472 5083 3.712907 GGTCACCGCCCTGGCTTA 61.713 66.667 6.60 0.00 43.94 3.09
4473 5084 2.436115 GTCACCGCCCTGGCTTAC 60.436 66.667 6.60 0.00 43.94 2.34
4474 5085 2.606519 TCACCGCCCTGGCTTACT 60.607 61.111 6.60 0.00 43.94 2.24
4475 5086 1.305465 TCACCGCCCTGGCTTACTA 60.305 57.895 6.60 0.00 43.94 1.82
4476 5087 1.153429 CACCGCCCTGGCTTACTAC 60.153 63.158 6.60 0.00 43.94 2.73
4477 5088 1.611261 ACCGCCCTGGCTTACTACA 60.611 57.895 6.60 0.00 43.94 2.74
4478 5089 1.144057 CCGCCCTGGCTTACTACAG 59.856 63.158 6.60 0.00 39.32 2.74
4479 5090 1.614241 CCGCCCTGGCTTACTACAGT 61.614 60.000 6.60 0.00 39.32 3.55
4480 5091 0.460284 CGCCCTGGCTTACTACAGTG 60.460 60.000 6.60 0.00 39.32 3.66
4481 5092 0.107654 GCCCTGGCTTACTACAGTGG 60.108 60.000 0.00 0.00 38.26 4.00
4482 5093 0.107654 CCCTGGCTTACTACAGTGGC 60.108 60.000 0.00 0.00 32.90 5.01
4483 5094 0.613260 CCTGGCTTACTACAGTGGCA 59.387 55.000 0.00 4.37 32.90 4.92
4484 5095 1.676014 CCTGGCTTACTACAGTGGCAC 60.676 57.143 10.29 10.29 32.90 5.01
4485 5096 0.037697 TGGCTTACTACAGTGGCACG 60.038 55.000 12.71 9.83 32.58 5.34
4486 5097 0.245539 GGCTTACTACAGTGGCACGA 59.754 55.000 12.71 0.67 32.58 4.35
4487 5098 1.347320 GCTTACTACAGTGGCACGAC 58.653 55.000 12.71 0.00 0.00 4.34
4488 5099 1.336517 GCTTACTACAGTGGCACGACA 60.337 52.381 12.71 0.00 0.00 4.35
4489 5100 2.596452 CTTACTACAGTGGCACGACAG 58.404 52.381 12.71 12.29 0.00 3.51
4490 5101 1.612676 TACTACAGTGGCACGACAGT 58.387 50.000 19.69 19.69 0.00 3.55
4491 5102 0.750850 ACTACAGTGGCACGACAGTT 59.249 50.000 12.71 0.00 0.00 3.16
4492 5103 1.139989 CTACAGTGGCACGACAGTTG 58.860 55.000 12.71 6.37 0.00 3.16
4493 5104 0.249699 TACAGTGGCACGACAGTTGG 60.250 55.000 12.71 0.00 0.00 3.77
4494 5105 2.111043 AGTGGCACGACAGTTGGG 59.889 61.111 12.71 0.00 0.00 4.12
4495 5106 2.110213 GTGGCACGACAGTTGGGA 59.890 61.111 0.00 0.00 0.00 4.37
4496 5107 2.110213 TGGCACGACAGTTGGGAC 59.890 61.111 0.00 0.00 0.00 4.46
4497 5108 3.041940 GGCACGACAGTTGGGACG 61.042 66.667 0.00 0.00 0.00 4.79
4498 5109 3.712881 GCACGACAGTTGGGACGC 61.713 66.667 0.00 0.00 0.00 5.19
4499 5110 3.041940 CACGACAGTTGGGACGCC 61.042 66.667 0.00 0.00 0.00 5.68
4500 5111 3.542676 ACGACAGTTGGGACGCCA 61.543 61.111 0.00 0.00 0.00 5.69
4501 5112 2.738521 CGACAGTTGGGACGCCAG 60.739 66.667 0.00 0.00 0.00 4.85
4502 5113 3.050275 GACAGTTGGGACGCCAGC 61.050 66.667 0.00 0.00 0.00 4.85
4503 5114 4.988598 ACAGTTGGGACGCCAGCG 62.989 66.667 11.05 11.05 46.03 5.18
4515 5126 2.125350 CCAGCGGCAGAGAACCTC 60.125 66.667 1.45 0.00 0.00 3.85
4516 5127 2.125350 CAGCGGCAGAGAACCTCC 60.125 66.667 1.45 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 5.995446 ACCTTGAGAAGTTCAAAGAAGACT 58.005 37.500 16.06 0.00 44.84 3.24
287 289 1.298859 CCGTTGGCTAGTGCTTCCAC 61.299 60.000 0.00 0.00 42.39 4.02
303 305 2.735151 TCACATGGATCAGTAGTCCGT 58.265 47.619 0.00 0.00 38.64 4.69
344 346 2.565645 CCTCCTATCCGACGGCAGG 61.566 68.421 22.03 22.03 0.00 4.85
436 438 3.334691 ACAGGTTATGTCACATCCAACG 58.665 45.455 0.00 0.00 37.75 4.10
470 472 8.883731 ACAACTATGCATCTAACAATAGTTCAC 58.116 33.333 0.19 0.00 39.15 3.18
472 474 9.708222 CAACAACTATGCATCTAACAATAGTTC 57.292 33.333 0.19 0.00 39.15 3.01
508 510 1.662629 CGCACCTGAATACAGCTTCTG 59.337 52.381 0.00 0.00 42.25 3.02
562 564 9.512588 CCCATCTGAATAAAGCTTCTGTAATAT 57.487 33.333 0.00 0.00 0.00 1.28
564 566 7.349598 ACCCATCTGAATAAAGCTTCTGTAAT 58.650 34.615 0.00 0.00 0.00 1.89
604 606 5.340010 GTCATGCTGCTGACATTACTATG 57.660 43.478 20.03 5.49 44.03 2.23
624 626 9.807386 GTAAACAACTGAACATTACATACTGTC 57.193 33.333 0.00 0.00 0.00 3.51
653 655 6.435591 TGATAGTTTCACAAACCCAATATGCA 59.564 34.615 0.00 0.00 42.34 3.96
663 665 8.129211 AGCAACTAAACTGATAGTTTCACAAAC 58.871 33.333 9.95 0.00 44.47 2.93
704 706 4.640201 ACGGCAAGTCACAATGCTTTATAT 59.360 37.500 5.67 0.00 42.20 0.86
705 707 4.006989 ACGGCAAGTCACAATGCTTTATA 58.993 39.130 5.67 0.00 42.20 0.98
715 717 0.310543 GCATGAAACGGCAAGTCACA 59.689 50.000 0.00 0.00 0.00 3.58
786 788 3.494924 CCACCACAATCTCAGACAGAACA 60.495 47.826 0.00 0.00 33.62 3.18
852 854 3.803778 GCACAAAGTTTGGACCAAGAATG 59.196 43.478 19.45 8.16 34.12 2.67
881 883 4.081862 TGGTATACAACAGGACAGCAGTAC 60.082 45.833 5.01 0.00 0.00 2.73
892 894 7.644945 CACAATAACATGCATGGTATACAACAG 59.355 37.037 32.17 20.46 39.65 3.16
901 903 5.709631 TGTAAGACACAATAACATGCATGGT 59.290 36.000 29.41 26.41 32.95 3.55
902 904 6.193514 TGTAAGACACAATAACATGCATGG 57.806 37.500 29.41 14.24 32.95 3.66
952 955 1.081277 GGAGAGAACCTGGGGGAGT 59.919 63.158 0.00 0.00 36.25 3.85
970 973 1.010125 CAGTGGTTCGTTGTTGGCG 60.010 57.895 0.00 0.00 0.00 5.69
979 982 2.947118 TATAGCGGCGCAGTGGTTCG 62.947 60.000 35.02 2.00 0.00 3.95
985 988 1.065928 GTGAGTATAGCGGCGCAGT 59.934 57.895 35.02 23.33 0.00 4.40
988 991 1.215655 CCAAGTGAGTATAGCGGCGC 61.216 60.000 26.86 26.86 0.00 6.53
992 995 1.068741 GGGGTCCAAGTGAGTATAGCG 59.931 57.143 0.00 0.00 0.00 4.26
1001 1004 1.956477 CAGAAACAAGGGGTCCAAGTG 59.044 52.381 0.00 0.00 0.00 3.16
1002 1005 1.850345 TCAGAAACAAGGGGTCCAAGT 59.150 47.619 0.00 0.00 0.00 3.16
1383 1386 4.599041 TGCTACTCACAGGCCAAATATTT 58.401 39.130 5.01 0.00 0.00 1.40
1425 1428 2.069273 CCCACAAACACGCAACAAAAA 58.931 42.857 0.00 0.00 0.00 1.94
1468 1471 3.637998 ATTCAGCAAAAGACACAGCAG 57.362 42.857 0.00 0.00 0.00 4.24
1540 1544 1.203994 GTACGGTACACCAGATGCAGT 59.796 52.381 13.25 0.00 35.14 4.40
1625 1629 1.899814 TCGAAAGAGTACCAGCCACAT 59.100 47.619 0.00 0.00 34.84 3.21
1627 1631 2.067013 GTTCGAAAGAGTACCAGCCAC 58.933 52.381 0.00 0.00 43.69 5.01
1673 1677 5.363580 CCAGTCCCATGCCTTATTATTTTGT 59.636 40.000 0.00 0.00 0.00 2.83
1823 1832 5.258216 ACACGACTCCATACCCTATCTAT 57.742 43.478 0.00 0.00 0.00 1.98
1861 1870 2.715763 TGGTTATAGGAGGCCTAGGG 57.284 55.000 4.42 0.00 39.70 3.53
1942 1977 1.418342 CGCTCCAATACCGAACACCG 61.418 60.000 0.00 0.00 38.18 4.94
1952 1987 1.153647 CGCTGACACCGCTCCAATA 60.154 57.895 0.00 0.00 0.00 1.90
1983 2216 3.087253 CCCCGGGGCATGACTACA 61.087 66.667 31.01 0.00 0.00 2.74
2070 2303 3.932710 CGATCCTCAAAGTCGATTTTCCA 59.067 43.478 2.51 0.00 37.55 3.53
2208 2441 8.834465 AGAAATCAGTTTAATGGAGATGAATCG 58.166 33.333 0.00 0.00 0.00 3.34
2226 2459 9.784680 CAATGTTAGGATCTTTCAAGAAATCAG 57.215 33.333 0.00 0.00 38.77 2.90
2234 2467 6.267471 AGGTTTGCAATGTTAGGATCTTTCAA 59.733 34.615 0.00 0.00 0.00 2.69
2235 2468 5.774690 AGGTTTGCAATGTTAGGATCTTTCA 59.225 36.000 0.00 0.00 0.00 2.69
2236 2469 6.272822 AGGTTTGCAATGTTAGGATCTTTC 57.727 37.500 0.00 0.00 0.00 2.62
2237 2470 6.041979 ACAAGGTTTGCAATGTTAGGATCTTT 59.958 34.615 0.00 0.00 0.00 2.52
2238 2471 5.539955 ACAAGGTTTGCAATGTTAGGATCTT 59.460 36.000 0.00 0.00 0.00 2.40
2239 2472 5.079643 ACAAGGTTTGCAATGTTAGGATCT 58.920 37.500 0.00 0.00 0.00 2.75
2240 2473 5.391312 ACAAGGTTTGCAATGTTAGGATC 57.609 39.130 0.00 0.00 0.00 3.36
2241 2474 5.304101 TGAACAAGGTTTGCAATGTTAGGAT 59.696 36.000 14.41 0.00 36.22 3.24
2242 2475 4.646945 TGAACAAGGTTTGCAATGTTAGGA 59.353 37.500 14.41 2.08 36.22 2.94
2243 2476 4.942852 TGAACAAGGTTTGCAATGTTAGG 58.057 39.130 14.41 0.55 36.22 2.69
2244 2477 6.925165 AGAATGAACAAGGTTTGCAATGTTAG 59.075 34.615 14.41 2.34 36.22 2.34
2245 2478 6.815089 AGAATGAACAAGGTTTGCAATGTTA 58.185 32.000 14.41 5.95 36.22 2.41
2246 2479 5.673514 AGAATGAACAAGGTTTGCAATGTT 58.326 33.333 14.35 14.35 38.62 2.71
2247 2480 5.280654 AGAATGAACAAGGTTTGCAATGT 57.719 34.783 0.00 0.00 0.00 2.71
2248 2481 6.449698 ACTAGAATGAACAAGGTTTGCAATG 58.550 36.000 0.00 0.00 0.00 2.82
2249 2482 6.655078 ACTAGAATGAACAAGGTTTGCAAT 57.345 33.333 0.00 0.00 0.00 3.56
2250 2483 7.759489 ATACTAGAATGAACAAGGTTTGCAA 57.241 32.000 0.00 0.00 0.00 4.08
2251 2484 8.100791 ACTATACTAGAATGAACAAGGTTTGCA 58.899 33.333 0.00 0.00 0.00 4.08
2252 2485 8.494016 ACTATACTAGAATGAACAAGGTTTGC 57.506 34.615 0.00 0.00 0.00 3.68
2257 2490 9.530633 GGTGTTACTATACTAGAATGAACAAGG 57.469 37.037 0.00 0.00 0.00 3.61
2258 2491 9.530633 GGGTGTTACTATACTAGAATGAACAAG 57.469 37.037 0.00 0.00 0.00 3.16
2259 2492 9.263446 AGGGTGTTACTATACTAGAATGAACAA 57.737 33.333 0.00 0.00 0.00 2.83
2260 2493 8.834004 AGGGTGTTACTATACTAGAATGAACA 57.166 34.615 0.00 0.00 0.00 3.18
2262 2495 9.060347 CGTAGGGTGTTACTATACTAGAATGAA 57.940 37.037 0.00 0.00 0.00 2.57
2263 2496 8.613060 CGTAGGGTGTTACTATACTAGAATGA 57.387 38.462 0.00 0.00 0.00 2.57
2284 2517 7.169308 CCACTGTTCTATATGTTTAAGCCGTAG 59.831 40.741 0.00 0.00 0.00 3.51
2285 2518 6.982141 CCACTGTTCTATATGTTTAAGCCGTA 59.018 38.462 0.00 0.00 0.00 4.02
2286 2519 5.815740 CCACTGTTCTATATGTTTAAGCCGT 59.184 40.000 0.00 0.00 0.00 5.68
2287 2520 5.815740 ACCACTGTTCTATATGTTTAAGCCG 59.184 40.000 0.00 0.00 0.00 5.52
2288 2521 7.335924 TCAACCACTGTTCTATATGTTTAAGCC 59.664 37.037 0.00 0.00 30.42 4.35
2289 2522 8.263940 TCAACCACTGTTCTATATGTTTAAGC 57.736 34.615 0.00 0.00 30.42 3.09
2299 2532 9.965824 CAGTTAAAATTTCAACCACTGTTCTAT 57.034 29.630 0.32 0.00 30.42 1.98
2300 2533 8.410141 CCAGTTAAAATTTCAACCACTGTTCTA 58.590 33.333 0.32 0.00 30.42 2.10
2301 2534 7.093509 ACCAGTTAAAATTTCAACCACTGTTCT 60.094 33.333 0.32 0.00 30.42 3.01
2302 2535 7.039270 ACCAGTTAAAATTTCAACCACTGTTC 58.961 34.615 0.32 0.00 30.42 3.18
2303 2536 6.941857 ACCAGTTAAAATTTCAACCACTGTT 58.058 32.000 0.32 0.00 34.14 3.16
2304 2537 6.538945 ACCAGTTAAAATTTCAACCACTGT 57.461 33.333 0.32 0.00 0.00 3.55
2305 2538 7.763985 AGAAACCAGTTAAAATTTCAACCACTG 59.236 33.333 0.32 4.85 34.22 3.66
2306 2539 7.763985 CAGAAACCAGTTAAAATTTCAACCACT 59.236 33.333 0.32 0.00 34.22 4.00
2307 2540 7.547722 ACAGAAACCAGTTAAAATTTCAACCAC 59.452 33.333 0.32 0.00 34.22 4.16
2308 2541 7.616313 ACAGAAACCAGTTAAAATTTCAACCA 58.384 30.769 0.32 0.00 34.22 3.67
2309 2542 9.244799 CTACAGAAACCAGTTAAAATTTCAACC 57.755 33.333 0.32 0.00 34.22 3.77
2310 2543 9.244799 CCTACAGAAACCAGTTAAAATTTCAAC 57.755 33.333 0.00 0.00 34.22 3.18
2435 2744 3.895232 TTGCTAAGGATGTCAGTCTCC 57.105 47.619 0.00 0.00 0.00 3.71
2487 2796 4.162040 AGCCATATCAGAAGAGGTTTGG 57.838 45.455 0.00 0.00 0.00 3.28
2643 2952 3.316308 GGTTGAACACTTCTGCATCAGTT 59.684 43.478 0.00 0.00 32.61 3.16
2741 3096 8.488651 AATTTCCTACTTATGTAAGTCAACGG 57.511 34.615 8.59 6.46 44.77 4.44
2760 3118 6.804783 CGTTTTGGTGGTAAGATGTAATTTCC 59.195 38.462 0.00 0.00 0.00 3.13
2902 3264 0.780002 GTTGACTGCATGCAAAAGCG 59.220 50.000 22.88 12.11 0.00 4.68
2917 3279 8.665643 AAGCAGAATTTGATGATTTTTGTTGA 57.334 26.923 0.00 0.00 0.00 3.18
3265 3633 1.468506 TAGCTTCCACTGCACCGTCA 61.469 55.000 0.00 0.00 0.00 4.35
3440 3809 0.249911 ACTTCACTCAACCGACCTGC 60.250 55.000 0.00 0.00 0.00 4.85
3493 3873 7.130269 ACGTAAAAACAGTCACTTTATTCAGC 58.870 34.615 0.00 0.00 0.00 4.26
3805 4234 3.827524 AAAAACAGCATTCGCGCG 58.172 50.000 26.76 26.76 45.49 6.86
3854 4283 2.094854 CCAGCATTTCAGCTCAGGTTTC 60.095 50.000 0.00 0.00 44.54 2.78
3863 4292 4.421948 CTTCAATCTTCCAGCATTTCAGC 58.578 43.478 0.00 0.00 0.00 4.26
3907 4401 2.879907 CAAGTCGGGCTTGCCATG 59.120 61.111 9.69 5.44 46.68 3.66
3969 4486 8.427276 TCACTTATGATAGATCTTGCAGTGATT 58.573 33.333 0.00 0.00 34.43 2.57
3989 4506 4.765339 TCTCAGAACTCGTCCAATCACTTA 59.235 41.667 0.00 0.00 0.00 2.24
4031 4548 6.882610 AAATTCATCTCTAATGGCGCATTA 57.117 33.333 10.83 10.59 35.54 1.90
4052 4663 9.228949 CAAATCCAAACCATCATAAATCCAAAA 57.771 29.630 0.00 0.00 0.00 2.44
4053 4664 7.828223 CCAAATCCAAACCATCATAAATCCAAA 59.172 33.333 0.00 0.00 0.00 3.28
4063 4674 4.901849 TGTTTACCCAAATCCAAACCATCA 59.098 37.500 0.00 0.00 31.38 3.07
4064 4675 5.476091 TGTTTACCCAAATCCAAACCATC 57.524 39.130 0.00 0.00 31.38 3.51
4100 4711 3.389925 TGTAACTCGTAACCTTGGTGG 57.610 47.619 0.00 0.00 42.93 4.61
4129 4740 9.528018 CAACAATGTACTCCAAGTAAATGTTTT 57.472 29.630 0.00 0.00 34.06 2.43
4142 4753 6.791303 TCTTCAAAACACAACAATGTACTCC 58.209 36.000 0.00 0.00 37.82 3.85
4212 4823 9.404348 GGTTTGAATTTTGTTGTGTTTGAATTT 57.596 25.926 0.00 0.00 0.00 1.82
4213 4824 8.571336 TGGTTTGAATTTTGTTGTGTTTGAATT 58.429 25.926 0.00 0.00 0.00 2.17
4214 4825 8.103948 TGGTTTGAATTTTGTTGTGTTTGAAT 57.896 26.923 0.00 0.00 0.00 2.57
4215 4826 7.496529 TGGTTTGAATTTTGTTGTGTTTGAA 57.503 28.000 0.00 0.00 0.00 2.69
4216 4827 7.496529 TTGGTTTGAATTTTGTTGTGTTTGA 57.503 28.000 0.00 0.00 0.00 2.69
4217 4828 8.636843 CAATTGGTTTGAATTTTGTTGTGTTTG 58.363 29.630 0.00 0.00 37.53 2.93
4218 4829 8.355913 ACAATTGGTTTGAATTTTGTTGTGTTT 58.644 25.926 10.83 0.00 38.76 2.83
4219 4830 7.880105 ACAATTGGTTTGAATTTTGTTGTGTT 58.120 26.923 10.83 0.00 38.76 3.32
4220 4831 7.446001 ACAATTGGTTTGAATTTTGTTGTGT 57.554 28.000 10.83 0.00 38.76 3.72
4221 4832 7.272948 CCAACAATTGGTTTGAATTTTGTTGTG 59.727 33.333 19.17 11.46 46.14 3.33
4222 4833 7.311408 CCAACAATTGGTTTGAATTTTGTTGT 58.689 30.769 19.17 0.98 46.14 3.32
4223 4834 7.737525 CCAACAATTGGTTTGAATTTTGTTG 57.262 32.000 10.83 16.03 46.67 3.33
4238 4849 2.288948 CCACCACACCATCCAACAATTG 60.289 50.000 3.24 3.24 0.00 2.32
4239 4850 1.969923 CCACCACACCATCCAACAATT 59.030 47.619 0.00 0.00 0.00 2.32
4240 4851 1.133199 ACCACCACACCATCCAACAAT 60.133 47.619 0.00 0.00 0.00 2.71
4241 4852 0.260230 ACCACCACACCATCCAACAA 59.740 50.000 0.00 0.00 0.00 2.83
4242 4853 0.260230 AACCACCACACCATCCAACA 59.740 50.000 0.00 0.00 0.00 3.33
4243 4854 0.673437 CAACCACCACACCATCCAAC 59.327 55.000 0.00 0.00 0.00 3.77
4244 4855 0.260230 ACAACCACCACACCATCCAA 59.740 50.000 0.00 0.00 0.00 3.53
4245 4856 0.179004 GACAACCACCACACCATCCA 60.179 55.000 0.00 0.00 0.00 3.41
4246 4857 0.179004 TGACAACCACCACACCATCC 60.179 55.000 0.00 0.00 0.00 3.51
4247 4858 1.202758 TCTGACAACCACCACACCATC 60.203 52.381 0.00 0.00 0.00 3.51
4248 4859 0.843309 TCTGACAACCACCACACCAT 59.157 50.000 0.00 0.00 0.00 3.55
4249 4860 0.843309 ATCTGACAACCACCACACCA 59.157 50.000 0.00 0.00 0.00 4.17
4250 4861 1.238439 CATCTGACAACCACCACACC 58.762 55.000 0.00 0.00 0.00 4.16
4251 4862 1.238439 CCATCTGACAACCACCACAC 58.762 55.000 0.00 0.00 0.00 3.82
4252 4863 0.843309 ACCATCTGACAACCACCACA 59.157 50.000 0.00 0.00 0.00 4.17
4253 4864 1.981256 AACCATCTGACAACCACCAC 58.019 50.000 0.00 0.00 0.00 4.16
4254 4865 3.866703 TTAACCATCTGACAACCACCA 57.133 42.857 0.00 0.00 0.00 4.17
4255 4866 3.254903 GGTTTAACCATCTGACAACCACC 59.745 47.826 9.56 0.00 38.42 4.61
4256 4867 3.886505 TGGTTTAACCATCTGACAACCAC 59.113 43.478 13.44 0.00 44.79 4.16
4257 4868 4.171878 TGGTTTAACCATCTGACAACCA 57.828 40.909 13.44 0.00 44.79 3.67
4269 4880 6.349860 GGGTGTCTATGTGATTTGGTTTAACC 60.350 42.308 7.27 7.27 39.22 2.85
4270 4881 6.349860 GGGGTGTCTATGTGATTTGGTTTAAC 60.350 42.308 0.00 0.00 0.00 2.01
4271 4882 5.712917 GGGGTGTCTATGTGATTTGGTTTAA 59.287 40.000 0.00 0.00 0.00 1.52
4272 4883 5.258051 GGGGTGTCTATGTGATTTGGTTTA 58.742 41.667 0.00 0.00 0.00 2.01
4273 4884 4.086457 GGGGTGTCTATGTGATTTGGTTT 58.914 43.478 0.00 0.00 0.00 3.27
4274 4885 3.563479 GGGGGTGTCTATGTGATTTGGTT 60.563 47.826 0.00 0.00 0.00 3.67
4275 4886 2.025321 GGGGGTGTCTATGTGATTTGGT 60.025 50.000 0.00 0.00 0.00 3.67
4276 4887 2.242196 AGGGGGTGTCTATGTGATTTGG 59.758 50.000 0.00 0.00 0.00 3.28
4277 4888 3.200825 AGAGGGGGTGTCTATGTGATTTG 59.799 47.826 0.00 0.00 0.00 2.32
4278 4889 3.464828 AGAGGGGGTGTCTATGTGATTT 58.535 45.455 0.00 0.00 0.00 2.17
4279 4890 3.136641 AGAGGGGGTGTCTATGTGATT 57.863 47.619 0.00 0.00 0.00 2.57
4280 4891 2.877154 AGAGGGGGTGTCTATGTGAT 57.123 50.000 0.00 0.00 0.00 3.06
4281 4892 3.769189 TTAGAGGGGGTGTCTATGTGA 57.231 47.619 0.00 0.00 0.00 3.58
4282 4893 3.005897 CGATTAGAGGGGGTGTCTATGTG 59.994 52.174 0.00 0.00 0.00 3.21
4283 4894 3.231818 CGATTAGAGGGGGTGTCTATGT 58.768 50.000 0.00 0.00 0.00 2.29
4284 4895 3.231818 ACGATTAGAGGGGGTGTCTATG 58.768 50.000 0.00 0.00 0.00 2.23
4285 4896 3.614568 ACGATTAGAGGGGGTGTCTAT 57.385 47.619 0.00 0.00 0.00 1.98
4286 4897 4.736611 ATACGATTAGAGGGGGTGTCTA 57.263 45.455 0.00 0.00 0.00 2.59
4287 4898 3.614568 ATACGATTAGAGGGGGTGTCT 57.385 47.619 0.00 0.00 0.00 3.41
4288 4899 4.405548 AGTATACGATTAGAGGGGGTGTC 58.594 47.826 0.00 0.00 0.00 3.67
4289 4900 4.466255 AGTATACGATTAGAGGGGGTGT 57.534 45.455 0.00 0.00 0.00 4.16
4290 4901 5.303589 TCAAAGTATACGATTAGAGGGGGTG 59.696 44.000 0.00 0.00 0.00 4.61
4291 4902 5.461327 TCAAAGTATACGATTAGAGGGGGT 58.539 41.667 0.00 0.00 0.00 4.95
4292 4903 6.221659 GTTCAAAGTATACGATTAGAGGGGG 58.778 44.000 0.00 0.00 0.00 5.40
4293 4904 6.041751 AGGTTCAAAGTATACGATTAGAGGGG 59.958 42.308 0.00 0.00 0.00 4.79
4294 4905 7.052142 AGGTTCAAAGTATACGATTAGAGGG 57.948 40.000 0.00 0.00 0.00 4.30
4307 4918 9.555727 GCTGATACCAATTATAGGTTCAAAGTA 57.444 33.333 0.00 0.00 40.54 2.24
4308 4919 7.226720 CGCTGATACCAATTATAGGTTCAAAGT 59.773 37.037 0.00 0.00 40.54 2.66
4309 4920 7.576236 CGCTGATACCAATTATAGGTTCAAAG 58.424 38.462 0.00 0.00 40.54 2.77
4310 4921 6.017440 GCGCTGATACCAATTATAGGTTCAAA 60.017 38.462 0.00 0.00 40.54 2.69
4311 4922 5.468746 GCGCTGATACCAATTATAGGTTCAA 59.531 40.000 0.00 0.00 40.54 2.69
4312 4923 4.994852 GCGCTGATACCAATTATAGGTTCA 59.005 41.667 0.00 0.00 40.54 3.18
4313 4924 4.994852 TGCGCTGATACCAATTATAGGTTC 59.005 41.667 9.73 0.00 40.54 3.62
4314 4925 4.968259 TGCGCTGATACCAATTATAGGTT 58.032 39.130 9.73 0.00 40.54 3.50
4315 4926 4.617253 TGCGCTGATACCAATTATAGGT 57.383 40.909 9.73 0.00 43.14 3.08
4316 4927 4.393062 CCTTGCGCTGATACCAATTATAGG 59.607 45.833 9.73 0.00 0.00 2.57
4317 4928 4.997395 ACCTTGCGCTGATACCAATTATAG 59.003 41.667 9.73 0.00 0.00 1.31
4318 4929 4.968259 ACCTTGCGCTGATACCAATTATA 58.032 39.130 9.73 0.00 0.00 0.98
4319 4930 3.820557 ACCTTGCGCTGATACCAATTAT 58.179 40.909 9.73 0.00 0.00 1.28
4320 4931 3.275617 ACCTTGCGCTGATACCAATTA 57.724 42.857 9.73 0.00 0.00 1.40
4321 4932 2.128771 ACCTTGCGCTGATACCAATT 57.871 45.000 9.73 0.00 0.00 2.32
4322 4933 2.170607 AGTACCTTGCGCTGATACCAAT 59.829 45.455 9.73 0.00 0.00 3.16
4323 4934 1.553248 AGTACCTTGCGCTGATACCAA 59.447 47.619 9.73 0.00 0.00 3.67
4324 4935 1.191535 AGTACCTTGCGCTGATACCA 58.808 50.000 9.73 0.00 0.00 3.25
4325 4936 2.311124 AAGTACCTTGCGCTGATACC 57.689 50.000 9.73 0.00 0.00 2.73
4326 4937 3.522553 AGAAAGTACCTTGCGCTGATAC 58.477 45.455 9.73 2.95 0.00 2.24
4327 4938 3.887621 AGAAAGTACCTTGCGCTGATA 57.112 42.857 9.73 0.00 0.00 2.15
4328 4939 2.770164 AGAAAGTACCTTGCGCTGAT 57.230 45.000 9.73 0.00 0.00 2.90
4329 4940 2.543777 AAGAAAGTACCTTGCGCTGA 57.456 45.000 9.73 0.00 0.00 4.26
4330 4941 2.290641 ACAAAGAAAGTACCTTGCGCTG 59.709 45.455 9.73 0.76 0.00 5.18
4331 4942 2.548480 GACAAAGAAAGTACCTTGCGCT 59.452 45.455 9.73 0.00 0.00 5.92
4332 4943 2.548480 AGACAAAGAAAGTACCTTGCGC 59.452 45.455 0.00 0.00 0.00 6.09
4333 4944 5.408604 ACATAGACAAAGAAAGTACCTTGCG 59.591 40.000 0.00 0.00 0.00 4.85
4334 4945 6.426937 TCACATAGACAAAGAAAGTACCTTGC 59.573 38.462 0.00 0.00 0.00 4.01
4335 4946 7.962964 TCACATAGACAAAGAAAGTACCTTG 57.037 36.000 0.00 0.00 0.00 3.61
4336 4947 9.574516 AAATCACATAGACAAAGAAAGTACCTT 57.425 29.630 0.00 0.00 0.00 3.50
4337 4948 9.003658 CAAATCACATAGACAAAGAAAGTACCT 57.996 33.333 0.00 0.00 0.00 3.08
4338 4949 8.237267 CCAAATCACATAGACAAAGAAAGTACC 58.763 37.037 0.00 0.00 0.00 3.34
4339 4950 8.784043 ACCAAATCACATAGACAAAGAAAGTAC 58.216 33.333 0.00 0.00 0.00 2.73
4340 4951 8.918202 ACCAAATCACATAGACAAAGAAAGTA 57.082 30.769 0.00 0.00 0.00 2.24
4341 4952 7.823745 ACCAAATCACATAGACAAAGAAAGT 57.176 32.000 0.00 0.00 0.00 2.66
4344 4955 9.959749 GTTAAACCAAATCACATAGACAAAGAA 57.040 29.630 0.00 0.00 0.00 2.52
4345 4956 8.573035 GGTTAAACCAAATCACATAGACAAAGA 58.427 33.333 0.00 0.00 38.42 2.52
4346 4957 8.742554 GGTTAAACCAAATCACATAGACAAAG 57.257 34.615 0.00 0.00 38.42 2.77
4363 4974 3.254903 GGTGGTTGTCAGATGGTTAAACC 59.745 47.826 0.00 0.00 39.22 3.27
4364 4975 3.886505 TGGTGGTTGTCAGATGGTTAAAC 59.113 43.478 0.00 0.00 0.00 2.01
4365 4976 3.886505 GTGGTGGTTGTCAGATGGTTAAA 59.113 43.478 0.00 0.00 0.00 1.52
4366 4977 3.117851 TGTGGTGGTTGTCAGATGGTTAA 60.118 43.478 0.00 0.00 0.00 2.01
4367 4978 2.439880 TGTGGTGGTTGTCAGATGGTTA 59.560 45.455 0.00 0.00 0.00 2.85
4368 4979 1.214175 TGTGGTGGTTGTCAGATGGTT 59.786 47.619 0.00 0.00 0.00 3.67
4369 4980 0.843309 TGTGGTGGTTGTCAGATGGT 59.157 50.000 0.00 0.00 0.00 3.55
4370 4981 1.238439 GTGTGGTGGTTGTCAGATGG 58.762 55.000 0.00 0.00 0.00 3.51
4371 4982 1.238439 GGTGTGGTGGTTGTCAGATG 58.762 55.000 0.00 0.00 0.00 2.90
4372 4983 0.843309 TGGTGTGGTGGTTGTCAGAT 59.157 50.000 0.00 0.00 0.00 2.90
4373 4984 0.843309 ATGGTGTGGTGGTTGTCAGA 59.157 50.000 0.00 0.00 0.00 3.27
4374 4985 1.238439 GATGGTGTGGTGGTTGTCAG 58.762 55.000 0.00 0.00 0.00 3.51
4375 4986 0.179004 GGATGGTGTGGTGGTTGTCA 60.179 55.000 0.00 0.00 0.00 3.58
4376 4987 1.234615 CGGATGGTGTGGTGGTTGTC 61.235 60.000 0.00 0.00 0.00 3.18
4377 4988 1.228124 CGGATGGTGTGGTGGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
4378 4989 1.072332 TCGGATGGTGTGGTGGTTG 59.928 57.895 0.00 0.00 0.00 3.77
4379 4990 1.072505 GTCGGATGGTGTGGTGGTT 59.927 57.895 0.00 0.00 0.00 3.67
4380 4991 1.488705 ATGTCGGATGGTGTGGTGGT 61.489 55.000 0.00 0.00 0.00 4.16
4381 4992 0.539518 TATGTCGGATGGTGTGGTGG 59.460 55.000 0.00 0.00 0.00 4.61
4382 4993 1.066502 TGTATGTCGGATGGTGTGGTG 60.067 52.381 0.00 0.00 0.00 4.17
4383 4994 1.066430 GTGTATGTCGGATGGTGTGGT 60.066 52.381 0.00 0.00 0.00 4.16
4384 4995 1.651987 GTGTATGTCGGATGGTGTGG 58.348 55.000 0.00 0.00 0.00 4.17
4385 4996 1.066502 TGGTGTATGTCGGATGGTGTG 60.067 52.381 0.00 0.00 0.00 3.82
4386 4997 1.271856 TGGTGTATGTCGGATGGTGT 58.728 50.000 0.00 0.00 0.00 4.16
4387 4998 2.006888 GTTGGTGTATGTCGGATGGTG 58.993 52.381 0.00 0.00 0.00 4.17
4388 4999 1.065709 GGTTGGTGTATGTCGGATGGT 60.066 52.381 0.00 0.00 0.00 3.55
4389 5000 1.663695 GGTTGGTGTATGTCGGATGG 58.336 55.000 0.00 0.00 0.00 3.51
4390 5001 1.286501 CGGTTGGTGTATGTCGGATG 58.713 55.000 0.00 0.00 0.00 3.51
4391 5002 0.899720 ACGGTTGGTGTATGTCGGAT 59.100 50.000 0.00 0.00 0.00 4.18
4392 5003 0.244450 GACGGTTGGTGTATGTCGGA 59.756 55.000 0.00 0.00 0.00 4.55
4393 5004 0.245539 AGACGGTTGGTGTATGTCGG 59.754 55.000 0.00 0.00 34.82 4.79
4394 5005 1.068125 TGAGACGGTTGGTGTATGTCG 60.068 52.381 0.00 0.00 34.82 4.35
4395 5006 2.029290 AGTGAGACGGTTGGTGTATGTC 60.029 50.000 0.00 0.00 0.00 3.06
4396 5007 1.968493 AGTGAGACGGTTGGTGTATGT 59.032 47.619 0.00 0.00 0.00 2.29
4397 5008 2.337583 CAGTGAGACGGTTGGTGTATG 58.662 52.381 0.00 0.00 0.00 2.39
4398 5009 1.337823 GCAGTGAGACGGTTGGTGTAT 60.338 52.381 0.00 0.00 0.00 2.29
4399 5010 0.032952 GCAGTGAGACGGTTGGTGTA 59.967 55.000 0.00 0.00 0.00 2.90
4400 5011 1.227556 GCAGTGAGACGGTTGGTGT 60.228 57.895 0.00 0.00 0.00 4.16
4401 5012 0.946221 GAGCAGTGAGACGGTTGGTG 60.946 60.000 0.00 0.00 0.00 4.17
4402 5013 1.367840 GAGCAGTGAGACGGTTGGT 59.632 57.895 0.00 0.00 0.00 3.67
4403 5014 1.734477 CGAGCAGTGAGACGGTTGG 60.734 63.158 0.00 0.00 0.00 3.77
4404 5015 2.375766 GCGAGCAGTGAGACGGTTG 61.376 63.158 0.00 0.00 0.00 3.77
4405 5016 2.049063 GCGAGCAGTGAGACGGTT 60.049 61.111 0.00 0.00 0.00 4.44
4406 5017 4.057428 GGCGAGCAGTGAGACGGT 62.057 66.667 0.00 0.00 0.00 4.83
4408 5019 4.406173 ACGGCGAGCAGTGAGACG 62.406 66.667 16.62 7.28 0.00 4.18
4409 5020 2.505118 GACGGCGAGCAGTGAGAC 60.505 66.667 16.62 0.00 0.00 3.36
4410 5021 3.749064 GGACGGCGAGCAGTGAGA 61.749 66.667 16.62 0.00 0.00 3.27
4411 5022 4.056125 TGGACGGCGAGCAGTGAG 62.056 66.667 16.62 0.00 0.00 3.51
4412 5023 4.357947 GTGGACGGCGAGCAGTGA 62.358 66.667 16.62 0.00 0.00 3.41
4413 5024 3.865929 AAGTGGACGGCGAGCAGTG 62.866 63.158 16.62 0.00 0.00 3.66
4414 5025 3.616721 AAGTGGACGGCGAGCAGT 61.617 61.111 16.62 0.00 0.00 4.40
4415 5026 3.114616 CAAGTGGACGGCGAGCAG 61.115 66.667 16.62 0.00 0.00 4.24
4416 5027 3.611674 TCAAGTGGACGGCGAGCA 61.612 61.111 16.62 0.00 0.00 4.26
4417 5028 3.112709 GTCAAGTGGACGGCGAGC 61.113 66.667 16.62 4.71 36.65 5.03
4424 5035 1.865340 GACTTTGGTCGTCAAGTGGAC 59.135 52.381 0.00 0.00 43.36 4.02
4425 5036 1.483004 TGACTTTGGTCGTCAAGTGGA 59.517 47.619 0.00 0.00 44.83 4.02
4426 5037 1.948104 TGACTTTGGTCGTCAAGTGG 58.052 50.000 0.00 0.00 44.83 4.00
4427 5038 2.349817 GCATGACTTTGGTCGTCAAGTG 60.350 50.000 0.00 0.00 43.80 3.16
4428 5039 1.873591 GCATGACTTTGGTCGTCAAGT 59.126 47.619 0.00 0.00 43.80 3.16
4429 5040 2.146342 AGCATGACTTTGGTCGTCAAG 58.854 47.619 0.00 0.00 43.80 3.02
4430 5041 2.143122 GAGCATGACTTTGGTCGTCAA 58.857 47.619 0.00 0.00 43.80 3.18
4431 5042 1.795768 GAGCATGACTTTGGTCGTCA 58.204 50.000 0.00 0.00 44.83 4.35
4435 5046 0.798776 CACCGAGCATGACTTTGGTC 59.201 55.000 0.00 0.00 42.42 4.02
4436 5047 0.606401 CCACCGAGCATGACTTTGGT 60.606 55.000 0.00 3.30 37.79 3.67
4437 5048 1.308069 CCCACCGAGCATGACTTTGG 61.308 60.000 0.00 2.68 0.00 3.28
4438 5049 0.606401 ACCCACCGAGCATGACTTTG 60.606 55.000 0.00 0.00 0.00 2.77
4439 5050 0.321653 GACCCACCGAGCATGACTTT 60.322 55.000 0.00 0.00 0.00 2.66
4440 5051 1.296715 GACCCACCGAGCATGACTT 59.703 57.895 0.00 0.00 0.00 3.01
4441 5052 1.913262 TGACCCACCGAGCATGACT 60.913 57.895 0.00 0.00 0.00 3.41
4442 5053 1.741770 GTGACCCACCGAGCATGAC 60.742 63.158 0.00 0.00 0.00 3.06
4443 5054 2.662596 GTGACCCACCGAGCATGA 59.337 61.111 0.00 0.00 0.00 3.07
4444 5055 2.436646 GGTGACCCACCGAGCATG 60.437 66.667 0.00 0.00 44.95 4.06
4462 5073 0.107654 CCACTGTAGTAAGCCAGGGC 60.108 60.000 0.97 0.97 42.33 5.19
4463 5074 0.107654 GCCACTGTAGTAAGCCAGGG 60.108 60.000 0.00 0.00 32.90 4.45
4464 5075 0.613260 TGCCACTGTAGTAAGCCAGG 59.387 55.000 4.40 0.00 32.90 4.45
4465 5076 1.726853 GTGCCACTGTAGTAAGCCAG 58.273 55.000 0.00 0.00 34.82 4.85
4466 5077 0.037697 CGTGCCACTGTAGTAAGCCA 60.038 55.000 0.00 0.00 0.00 4.75
4467 5078 0.245539 TCGTGCCACTGTAGTAAGCC 59.754 55.000 0.00 0.00 0.00 4.35
4468 5079 1.336517 TGTCGTGCCACTGTAGTAAGC 60.337 52.381 0.00 0.00 0.00 3.09
4469 5080 2.030185 ACTGTCGTGCCACTGTAGTAAG 60.030 50.000 0.00 0.00 0.00 2.34
4470 5081 1.958579 ACTGTCGTGCCACTGTAGTAA 59.041 47.619 0.00 0.00 0.00 2.24
4471 5082 1.612676 ACTGTCGTGCCACTGTAGTA 58.387 50.000 0.00 0.00 0.00 1.82
4472 5083 0.750850 AACTGTCGTGCCACTGTAGT 59.249 50.000 0.00 0.00 0.00 2.73
4473 5084 1.139989 CAACTGTCGTGCCACTGTAG 58.860 55.000 0.00 0.00 0.00 2.74
4474 5085 0.249699 CCAACTGTCGTGCCACTGTA 60.250 55.000 0.00 0.00 0.00 2.74
4475 5086 1.523711 CCAACTGTCGTGCCACTGT 60.524 57.895 0.00 0.00 0.00 3.55
4476 5087 2.253758 CCCAACTGTCGTGCCACTG 61.254 63.158 0.00 0.00 0.00 3.66
4477 5088 2.111043 CCCAACTGTCGTGCCACT 59.889 61.111 0.00 0.00 0.00 4.00
4478 5089 2.110213 TCCCAACTGTCGTGCCAC 59.890 61.111 0.00 0.00 0.00 5.01
4479 5090 2.110213 GTCCCAACTGTCGTGCCA 59.890 61.111 0.00 0.00 0.00 4.92
4480 5091 3.041940 CGTCCCAACTGTCGTGCC 61.042 66.667 0.00 0.00 0.00 5.01
4481 5092 3.712881 GCGTCCCAACTGTCGTGC 61.713 66.667 0.00 0.00 0.00 5.34
4482 5093 3.041940 GGCGTCCCAACTGTCGTG 61.042 66.667 0.00 0.00 0.00 4.35
4483 5094 3.515316 CTGGCGTCCCAACTGTCGT 62.515 63.158 0.00 0.00 41.58 4.34
4484 5095 2.738521 CTGGCGTCCCAACTGTCG 60.739 66.667 0.00 0.00 41.58 4.35
4485 5096 3.050275 GCTGGCGTCCCAACTGTC 61.050 66.667 0.00 0.00 41.58 3.51
4486 5097 4.988598 CGCTGGCGTCCCAACTGT 62.989 66.667 6.83 0.00 41.58 3.55
4498 5109 2.125350 GAGGTTCTCTGCCGCTGG 60.125 66.667 0.00 0.00 0.00 4.85
4499 5110 2.125350 GGAGGTTCTCTGCCGCTG 60.125 66.667 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.