Multiple sequence alignment - TraesCS7B01G120900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G120900 chr7B 100.000 2626 0 0 1 2626 141009751 141007126 0.000000e+00 4850.0
1 TraesCS7B01G120900 chr7D 90.270 1223 76 25 461 1675 175662432 175661245 0.000000e+00 1559.0
2 TraesCS7B01G120900 chr7D 93.255 682 36 6 1692 2369 175661260 175660585 0.000000e+00 996.0
3 TraesCS7B01G120900 chr7D 96.053 76 3 0 2551 2626 175659042 175658967 9.870000e-25 124.0
4 TraesCS7B01G120900 chr7A 86.998 1246 81 32 461 1678 177344982 177343790 0.000000e+00 1328.0
5 TraesCS7B01G120900 chr7A 93.040 546 31 5 2081 2626 177343273 177342735 0.000000e+00 791.0
6 TraesCS7B01G120900 chr7A 89.744 390 28 7 1692 2077 177343808 177343427 3.040000e-134 488.0
7 TraesCS7B01G120900 chr5A 91.138 835 51 8 1811 2626 436622668 436623498 0.000000e+00 1110.0
8 TraesCS7B01G120900 chr5A 84.008 1013 92 28 700 1680 436336891 436337865 0.000000e+00 909.0
9 TraesCS7B01G120900 chr5A 83.690 981 105 32 717 1680 436352921 436353863 0.000000e+00 874.0
10 TraesCS7B01G120900 chr5A 87.738 473 51 5 1214 1680 436357175 436357646 1.780000e-151 545.0
11 TraesCS7B01G120900 chr5A 85.845 438 45 9 734 1166 436329417 436328992 1.430000e-122 449.0
12 TraesCS7B01G120900 chr5A 80.706 425 52 20 744 1164 436548621 436549019 1.180000e-78 303.0
13 TraesCS7B01G120900 chr5A 90.385 104 2 2 571 667 436590724 436590826 2.120000e-26 130.0
14 TraesCS7B01G120900 chr5A 89.423 104 3 2 571 667 436381773 436381875 9.870000e-25 124.0
15 TraesCS7B01G120900 chr5D 91.039 837 47 9 1811 2626 335133150 335133979 0.000000e+00 1105.0
16 TraesCS7B01G120900 chr5D 83.284 1005 101 27 701 1680 335060577 335061539 0.000000e+00 863.0
17 TraesCS7B01G120900 chr5D 82.791 953 118 33 717 1656 335079237 335080156 0.000000e+00 809.0
18 TraesCS7B01G120900 chr5D 79.664 1190 155 54 508 1680 335083617 335084736 0.000000e+00 776.0
19 TraesCS7B01G120900 chr5D 86.686 706 60 15 474 1166 335120933 335121617 0.000000e+00 752.0
20 TraesCS7B01G120900 chr5D 82.538 733 57 29 461 1166 335086800 335087488 1.750000e-161 579.0
21 TraesCS7B01G120900 chr5D 91.325 415 29 6 1271 1680 335121615 335122027 6.350000e-156 560.0
22 TraesCS7B01G120900 chr5D 87.764 474 37 10 704 1166 334970055 334969592 3.850000e-148 534.0
23 TraesCS7B01G120900 chr5D 82.546 487 29 30 704 1165 334991056 334990601 6.860000e-101 377.0
24 TraesCS7B01G120900 chr5D 81.055 512 63 11 1811 2302 335220553 335221050 6.860000e-101 377.0
25 TraesCS7B01G120900 chr5B 89.964 837 55 14 1811 2626 392138789 392139617 0.000000e+00 1053.0
26 TraesCS7B01G120900 chr5B 86.022 558 42 14 596 1128 392118457 392119003 1.360000e-157 566.0
27 TraesCS7B01G120900 chr5B 89.598 423 44 0 1240 1662 392064546 392064968 2.970000e-149 538.0
28 TraesCS7B01G120900 chr5B 86.469 473 40 14 704 1166 391826763 391826305 5.050000e-137 497.0
29 TraesCS7B01G120900 chr5B 82.278 474 53 20 699 1167 391866545 391866992 5.300000e-102 381.0
30 TraesCS7B01G120900 chr5B 78.226 496 69 16 1811 2275 392151646 392152133 5.530000e-72 281.0
31 TraesCS7B01G120900 chr3A 91.026 156 14 0 233 388 705961038 705960883 7.360000e-51 211.0
32 TraesCS7B01G120900 chr3D 95.238 42 2 0 421 462 558222066 558222107 1.690000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G120900 chr7B 141007126 141009751 2625 True 4850.000000 4850 100.000000 1 2626 1 chr7B.!!$R1 2625
1 TraesCS7B01G120900 chr7D 175658967 175662432 3465 True 893.000000 1559 93.192667 461 2626 3 chr7D.!!$R1 2165
2 TraesCS7B01G120900 chr7A 177342735 177344982 2247 True 869.000000 1328 89.927333 461 2626 3 chr7A.!!$R1 2165
3 TraesCS7B01G120900 chr5A 436622668 436623498 830 False 1110.000000 1110 91.138000 1811 2626 1 chr5A.!!$F5 815
4 TraesCS7B01G120900 chr5A 436336891 436337865 974 False 909.000000 909 84.008000 700 1680 1 chr5A.!!$F1 980
5 TraesCS7B01G120900 chr5A 436352921 436357646 4725 False 709.500000 874 85.714000 717 1680 2 chr5A.!!$F6 963
6 TraesCS7B01G120900 chr5D 335133150 335133979 829 False 1105.000000 1105 91.039000 1811 2626 1 chr5D.!!$F2 815
7 TraesCS7B01G120900 chr5D 335060577 335061539 962 False 863.000000 863 83.284000 701 1680 1 chr5D.!!$F1 979
8 TraesCS7B01G120900 chr5D 335079237 335087488 8251 False 721.333333 809 81.664333 461 1680 3 chr5D.!!$F4 1219
9 TraesCS7B01G120900 chr5D 335120933 335122027 1094 False 656.000000 752 89.005500 474 1680 2 chr5D.!!$F5 1206
10 TraesCS7B01G120900 chr5B 392138789 392139617 828 False 1053.000000 1053 89.964000 1811 2626 1 chr5B.!!$F4 815
11 TraesCS7B01G120900 chr5B 392118457 392119003 546 False 566.000000 566 86.022000 596 1128 1 chr5B.!!$F3 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 0.031721 GGACGTCTTCTCGTGGTGTT 59.968 55.0 16.46 0.00 44.21 3.32 F
319 320 0.039437 CTCTCTGTACGTTGCACCGT 60.039 55.0 15.28 15.28 44.50 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1179 1373 0.251922 ACATGGCATGCTTTGGGACT 60.252 50.0 26.70 1.3 0.00 3.85 R
1634 1850 0.390603 TGTTATCCGGTCGGCAACAG 60.391 55.0 18.53 0.0 36.06 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.978186 CGAATGAAGTGTTTGATCATGCT 58.022 39.130 0.00 0.00 34.21 3.79
23 24 6.110543 CGAATGAAGTGTTTGATCATGCTA 57.889 37.500 0.00 0.00 34.21 3.49
24 25 6.545508 CGAATGAAGTGTTTGATCATGCTAA 58.454 36.000 0.00 0.00 34.21 3.09
25 26 7.022979 CGAATGAAGTGTTTGATCATGCTAAA 58.977 34.615 0.00 0.00 34.21 1.85
26 27 7.217636 CGAATGAAGTGTTTGATCATGCTAAAG 59.782 37.037 0.00 0.00 34.21 1.85
27 28 6.258230 TGAAGTGTTTGATCATGCTAAAGG 57.742 37.500 0.00 0.00 0.00 3.11
28 29 4.708726 AGTGTTTGATCATGCTAAAGGC 57.291 40.909 0.00 0.00 42.22 4.35
29 30 4.338879 AGTGTTTGATCATGCTAAAGGCT 58.661 39.130 0.00 0.00 42.39 4.58
30 31 5.500234 AGTGTTTGATCATGCTAAAGGCTA 58.500 37.500 0.00 0.00 42.39 3.93
31 32 5.587844 AGTGTTTGATCATGCTAAAGGCTAG 59.412 40.000 0.00 0.00 42.39 3.42
32 33 4.883585 TGTTTGATCATGCTAAAGGCTAGG 59.116 41.667 0.00 0.00 42.39 3.02
33 34 3.131709 TGATCATGCTAAAGGCTAGGC 57.868 47.619 8.55 8.55 42.39 3.93
34 35 2.439135 TGATCATGCTAAAGGCTAGGCA 59.561 45.455 19.70 5.26 42.39 4.75
35 36 2.332063 TCATGCTAAAGGCTAGGCAC 57.668 50.000 19.70 2.90 42.39 5.01
36 37 1.134098 TCATGCTAAAGGCTAGGCACC 60.134 52.381 19.70 0.00 42.39 5.01
37 38 0.179045 ATGCTAAAGGCTAGGCACCG 60.179 55.000 19.70 4.90 42.39 4.94
38 39 1.261938 TGCTAAAGGCTAGGCACCGA 61.262 55.000 19.70 0.00 42.39 4.69
39 40 0.106894 GCTAAAGGCTAGGCACCGAT 59.893 55.000 19.70 2.04 38.06 4.18
40 41 1.871080 CTAAAGGCTAGGCACCGATG 58.129 55.000 19.70 0.00 0.00 3.84
41 42 0.468226 TAAAGGCTAGGCACCGATGG 59.532 55.000 19.70 0.00 0.00 3.51
42 43 1.271840 AAAGGCTAGGCACCGATGGA 61.272 55.000 19.70 0.00 0.00 3.41
43 44 1.690219 AAGGCTAGGCACCGATGGAG 61.690 60.000 19.70 0.00 0.00 3.86
44 45 2.280457 GCTAGGCACCGATGGAGC 60.280 66.667 0.00 0.00 38.54 4.70
45 46 2.028190 CTAGGCACCGATGGAGCG 59.972 66.667 0.00 0.00 40.13 5.03
53 54 3.576356 CGATGGAGCGGCGCATTT 61.576 61.111 35.02 14.24 0.00 2.32
54 55 2.025156 GATGGAGCGGCGCATTTG 59.975 61.111 35.02 0.00 0.00 2.32
55 56 4.197498 ATGGAGCGGCGCATTTGC 62.197 61.111 35.02 19.36 37.78 3.68
70 71 4.169102 TGCGAGATTGCAGACGAC 57.831 55.556 0.00 0.00 40.62 4.34
71 72 1.801512 TGCGAGATTGCAGACGACG 60.802 57.895 0.00 0.00 40.62 5.12
72 73 1.801913 GCGAGATTGCAGACGACGT 60.802 57.895 0.00 0.00 34.15 4.34
73 74 0.522705 GCGAGATTGCAGACGACGTA 60.523 55.000 0.00 0.00 34.15 3.57
74 75 1.860399 GCGAGATTGCAGACGACGTAT 60.860 52.381 0.00 0.00 34.15 3.06
75 76 2.037649 CGAGATTGCAGACGACGTATC 58.962 52.381 0.00 0.00 0.00 2.24
76 77 2.538939 CGAGATTGCAGACGACGTATCA 60.539 50.000 0.00 0.00 0.00 2.15
77 78 3.633235 GAGATTGCAGACGACGTATCAT 58.367 45.455 0.00 0.00 0.00 2.45
78 79 3.633235 AGATTGCAGACGACGTATCATC 58.367 45.455 0.00 0.00 0.00 2.92
79 80 3.316588 AGATTGCAGACGACGTATCATCT 59.683 43.478 0.00 1.64 0.00 2.90
80 81 3.503827 TTGCAGACGACGTATCATCTT 57.496 42.857 0.00 0.00 0.00 2.40
81 82 3.066369 TGCAGACGACGTATCATCTTC 57.934 47.619 0.00 0.00 0.00 2.87
82 83 2.422127 TGCAGACGACGTATCATCTTCA 59.578 45.455 0.00 0.00 0.00 3.02
83 84 3.119637 TGCAGACGACGTATCATCTTCAA 60.120 43.478 0.00 0.00 0.00 2.69
84 85 3.240861 GCAGACGACGTATCATCTTCAAC 59.759 47.826 0.00 0.00 0.00 3.18
85 86 4.412207 CAGACGACGTATCATCTTCAACA 58.588 43.478 0.00 0.00 0.00 3.33
86 87 4.263209 CAGACGACGTATCATCTTCAACAC 59.737 45.833 0.00 0.00 0.00 3.32
87 88 3.508762 ACGACGTATCATCTTCAACACC 58.491 45.455 0.00 0.00 0.00 4.16
88 89 3.192844 ACGACGTATCATCTTCAACACCT 59.807 43.478 0.00 0.00 0.00 4.00
89 90 4.174009 CGACGTATCATCTTCAACACCTT 58.826 43.478 0.00 0.00 0.00 3.50
90 91 4.031765 CGACGTATCATCTTCAACACCTTG 59.968 45.833 0.00 0.00 0.00 3.61
91 92 5.147330 ACGTATCATCTTCAACACCTTGA 57.853 39.130 0.00 0.00 34.39 3.02
92 93 5.734720 ACGTATCATCTTCAACACCTTGAT 58.265 37.500 0.00 0.00 36.26 2.57
93 94 6.873997 ACGTATCATCTTCAACACCTTGATA 58.126 36.000 0.00 0.00 36.26 2.15
94 95 6.757010 ACGTATCATCTTCAACACCTTGATAC 59.243 38.462 9.67 9.67 40.84 2.24
95 96 6.980978 CGTATCATCTTCAACACCTTGATACT 59.019 38.462 15.08 0.00 41.52 2.12
96 97 8.135529 CGTATCATCTTCAACACCTTGATACTA 58.864 37.037 15.08 0.00 41.52 1.82
97 98 9.469807 GTATCATCTTCAACACCTTGATACTAG 57.530 37.037 11.63 0.00 40.96 2.57
98 99 7.718334 TCATCTTCAACACCTTGATACTAGA 57.282 36.000 0.00 0.00 36.26 2.43
99 100 8.134202 TCATCTTCAACACCTTGATACTAGAA 57.866 34.615 0.00 0.00 36.26 2.10
100 101 8.593679 TCATCTTCAACACCTTGATACTAGAAA 58.406 33.333 0.00 0.00 36.26 2.52
101 102 9.219603 CATCTTCAACACCTTGATACTAGAAAA 57.780 33.333 0.00 0.00 36.26 2.29
102 103 8.833231 TCTTCAACACCTTGATACTAGAAAAG 57.167 34.615 0.00 0.00 36.26 2.27
103 104 8.647796 TCTTCAACACCTTGATACTAGAAAAGA 58.352 33.333 0.00 0.00 36.26 2.52
104 105 8.603242 TTCAACACCTTGATACTAGAAAAGAC 57.397 34.615 0.00 0.00 36.26 3.01
105 106 7.963532 TCAACACCTTGATACTAGAAAAGACT 58.036 34.615 0.00 0.00 31.00 3.24
106 107 8.429641 TCAACACCTTGATACTAGAAAAGACTT 58.570 33.333 0.00 0.00 31.00 3.01
107 108 8.713271 CAACACCTTGATACTAGAAAAGACTTC 58.287 37.037 0.00 0.00 0.00 3.01
108 109 7.963532 ACACCTTGATACTAGAAAAGACTTCA 58.036 34.615 0.00 0.00 0.00 3.02
109 110 8.091449 ACACCTTGATACTAGAAAAGACTTCAG 58.909 37.037 0.00 0.00 0.00 3.02
110 111 8.091449 CACCTTGATACTAGAAAAGACTTCAGT 58.909 37.037 0.00 0.00 0.00 3.41
111 112 8.091449 ACCTTGATACTAGAAAAGACTTCAGTG 58.909 37.037 0.00 0.00 0.00 3.66
112 113 8.307483 CCTTGATACTAGAAAAGACTTCAGTGA 58.693 37.037 0.00 0.00 0.00 3.41
113 114 9.868277 CTTGATACTAGAAAAGACTTCAGTGAT 57.132 33.333 0.00 0.00 0.00 3.06
120 121 9.575783 CTAGAAAAGACTTCAGTGATTACTACC 57.424 37.037 0.00 0.00 34.74 3.18
121 122 7.091443 AGAAAAGACTTCAGTGATTACTACCG 58.909 38.462 0.00 0.00 34.74 4.02
122 123 5.979288 AAGACTTCAGTGATTACTACCGT 57.021 39.130 0.00 0.00 34.74 4.83
123 124 5.312120 AGACTTCAGTGATTACTACCGTG 57.688 43.478 0.00 0.00 34.74 4.94
124 125 5.008331 AGACTTCAGTGATTACTACCGTGA 58.992 41.667 0.00 0.00 34.74 4.35
125 126 5.652891 AGACTTCAGTGATTACTACCGTGAT 59.347 40.000 0.00 0.00 34.74 3.06
126 127 6.827251 AGACTTCAGTGATTACTACCGTGATA 59.173 38.462 0.00 0.00 34.74 2.15
127 128 7.502895 AGACTTCAGTGATTACTACCGTGATAT 59.497 37.037 0.00 0.00 34.74 1.63
128 129 7.649973 ACTTCAGTGATTACTACCGTGATATC 58.350 38.462 0.00 0.00 34.74 1.63
129 130 7.284716 ACTTCAGTGATTACTACCGTGATATCA 59.715 37.037 0.00 0.00 34.74 2.15
130 131 7.761038 TCAGTGATTACTACCGTGATATCAT 57.239 36.000 9.02 0.00 34.74 2.45
131 132 8.178313 TCAGTGATTACTACCGTGATATCATT 57.822 34.615 9.02 0.00 34.74 2.57
132 133 8.638873 TCAGTGATTACTACCGTGATATCATTT 58.361 33.333 9.02 0.00 34.74 2.32
133 134 9.261180 CAGTGATTACTACCGTGATATCATTTT 57.739 33.333 9.02 0.00 34.74 1.82
134 135 9.832445 AGTGATTACTACCGTGATATCATTTTT 57.168 29.630 9.02 0.00 34.74 1.94
135 136 9.864034 GTGATTACTACCGTGATATCATTTTTG 57.136 33.333 9.02 2.95 0.00 2.44
136 137 9.051679 TGATTACTACCGTGATATCATTTTTGG 57.948 33.333 9.02 8.68 0.00 3.28
137 138 5.751243 ACTACCGTGATATCATTTTTGGC 57.249 39.130 9.02 0.00 0.00 4.52
138 139 5.189928 ACTACCGTGATATCATTTTTGGCA 58.810 37.500 9.02 0.00 0.00 4.92
139 140 4.370364 ACCGTGATATCATTTTTGGCAC 57.630 40.909 9.02 0.00 0.00 5.01
140 141 3.761218 ACCGTGATATCATTTTTGGCACA 59.239 39.130 9.02 0.00 0.00 4.57
141 142 4.142403 ACCGTGATATCATTTTTGGCACAG 60.142 41.667 9.02 0.00 42.39 3.66
142 143 4.353737 CGTGATATCATTTTTGGCACAGG 58.646 43.478 9.02 0.00 42.39 4.00
143 144 4.685924 GTGATATCATTTTTGGCACAGGG 58.314 43.478 9.02 0.00 42.39 4.45
144 145 3.132646 TGATATCATTTTTGGCACAGGGC 59.867 43.478 0.00 0.00 42.39 5.19
154 155 3.520623 GCACAGGGCCTAATGGATT 57.479 52.632 5.28 0.00 36.11 3.01
155 156 1.780503 GCACAGGGCCTAATGGATTT 58.219 50.000 5.28 0.00 36.11 2.17
156 157 2.110578 GCACAGGGCCTAATGGATTTT 58.889 47.619 5.28 0.00 36.11 1.82
157 158 2.101415 GCACAGGGCCTAATGGATTTTC 59.899 50.000 5.28 0.00 36.11 2.29
158 159 2.695147 CACAGGGCCTAATGGATTTTCC 59.305 50.000 5.28 0.00 36.96 3.13
159 160 1.956477 CAGGGCCTAATGGATTTTCCG 59.044 52.381 5.28 0.00 40.17 4.30
160 161 1.133482 AGGGCCTAATGGATTTTCCGG 60.133 52.381 2.82 0.00 40.17 5.14
161 162 0.673985 GGCCTAATGGATTTTCCGGC 59.326 55.000 0.00 0.00 40.17 6.13
162 163 1.692411 GCCTAATGGATTTTCCGGCT 58.308 50.000 0.00 0.00 40.17 5.52
163 164 2.488347 GGCCTAATGGATTTTCCGGCTA 60.488 50.000 0.00 0.00 40.17 3.93
164 165 2.814336 GCCTAATGGATTTTCCGGCTAG 59.186 50.000 0.00 0.00 40.17 3.42
165 166 3.496160 GCCTAATGGATTTTCCGGCTAGA 60.496 47.826 0.00 0.00 40.17 2.43
166 167 4.714632 CCTAATGGATTTTCCGGCTAGAA 58.285 43.478 0.00 0.00 40.17 2.10
167 168 5.130350 CCTAATGGATTTTCCGGCTAGAAA 58.870 41.667 0.00 0.00 40.17 2.52
168 169 5.592688 CCTAATGGATTTTCCGGCTAGAAAA 59.407 40.000 14.07 14.07 46.63 2.29
169 170 5.993748 AATGGATTTTCCGGCTAGAAAAA 57.006 34.783 15.20 0.00 45.94 1.94
170 171 4.776795 TGGATTTTCCGGCTAGAAAAAC 57.223 40.909 15.20 13.02 45.94 2.43
171 172 4.106029 GGATTTTCCGGCTAGAAAAACC 57.894 45.455 18.13 18.13 45.94 3.27
172 173 3.762288 GGATTTTCCGGCTAGAAAAACCT 59.238 43.478 22.16 8.77 46.86 3.50
173 174 4.142447 GGATTTTCCGGCTAGAAAAACCTC 60.142 45.833 22.16 14.26 46.86 3.85
174 175 3.782656 TTTCCGGCTAGAAAAACCTCT 57.217 42.857 0.00 0.00 32.90 3.69
175 176 4.895668 TTTCCGGCTAGAAAAACCTCTA 57.104 40.909 0.00 0.00 32.90 2.43
176 177 4.895668 TTCCGGCTAGAAAAACCTCTAA 57.104 40.909 0.00 0.00 0.00 2.10
177 178 5.431179 TTCCGGCTAGAAAAACCTCTAAT 57.569 39.130 0.00 0.00 0.00 1.73
178 179 4.766375 TCCGGCTAGAAAAACCTCTAATG 58.234 43.478 0.00 0.00 0.00 1.90
179 180 4.224370 TCCGGCTAGAAAAACCTCTAATGT 59.776 41.667 0.00 0.00 0.00 2.71
180 181 4.941873 CCGGCTAGAAAAACCTCTAATGTT 59.058 41.667 0.00 0.00 0.00 2.71
181 182 5.064834 CCGGCTAGAAAAACCTCTAATGTTC 59.935 44.000 0.00 0.00 0.00 3.18
182 183 5.875359 CGGCTAGAAAAACCTCTAATGTTCT 59.125 40.000 0.00 0.00 0.00 3.01
183 184 6.371825 CGGCTAGAAAAACCTCTAATGTTCTT 59.628 38.462 0.00 0.00 0.00 2.52
184 185 7.530863 GGCTAGAAAAACCTCTAATGTTCTTG 58.469 38.462 0.00 0.00 0.00 3.02
185 186 7.175119 GGCTAGAAAAACCTCTAATGTTCTTGT 59.825 37.037 0.00 0.00 0.00 3.16
186 187 8.568794 GCTAGAAAAACCTCTAATGTTCTTGTT 58.431 33.333 0.00 0.00 0.00 2.83
203 204 5.674933 CTTGTTAACAAGTCAGGAGTTCC 57.325 43.478 31.55 0.00 46.11 3.62
204 205 4.081322 TGTTAACAAGTCAGGAGTTCCC 57.919 45.455 5.64 0.00 36.42 3.97
205 206 5.687706 CTTGTTAACAAGTCAGGAGTTCCCT 60.688 44.000 31.55 0.00 45.93 4.20
206 207 4.165372 TGTTAACAAGTCAGGAGTTCCCTT 59.835 41.667 5.64 0.00 44.85 3.95
207 208 3.953542 AACAAGTCAGGAGTTCCCTTT 57.046 42.857 0.00 0.00 44.85 3.11
208 209 3.953542 ACAAGTCAGGAGTTCCCTTTT 57.046 42.857 0.00 0.00 44.85 2.27
209 210 5.382664 AACAAGTCAGGAGTTCCCTTTTA 57.617 39.130 0.00 0.00 44.85 1.52
210 211 5.584551 ACAAGTCAGGAGTTCCCTTTTAT 57.415 39.130 0.00 0.00 44.85 1.40
211 212 6.697641 ACAAGTCAGGAGTTCCCTTTTATA 57.302 37.500 0.00 0.00 44.85 0.98
212 213 6.712276 ACAAGTCAGGAGTTCCCTTTTATAG 58.288 40.000 0.00 0.00 44.85 1.31
213 214 5.959583 AGTCAGGAGTTCCCTTTTATAGG 57.040 43.478 0.00 0.00 44.85 2.57
234 235 6.704289 AGGAAGGTAAACAAAAGTTGTACC 57.296 37.500 5.33 5.33 44.59 3.34
236 237 6.320418 AGGAAGGTAAACAAAAGTTGTACCTG 59.680 38.462 13.68 0.00 46.66 4.00
237 238 6.459670 AAGGTAAACAAAAGTTGTACCTGG 57.540 37.500 13.68 0.00 46.66 4.45
238 239 5.757988 AGGTAAACAAAAGTTGTACCTGGA 58.242 37.500 12.63 0.00 45.99 3.86
239 240 5.591472 AGGTAAACAAAAGTTGTACCTGGAC 59.409 40.000 12.63 0.00 45.99 4.02
240 241 4.994907 AAACAAAAGTTGTACCTGGACC 57.005 40.909 0.00 0.00 44.59 4.46
241 242 3.945640 ACAAAAGTTGTACCTGGACCT 57.054 42.857 0.00 0.00 43.27 3.85
242 243 5.376756 AACAAAAGTTGTACCTGGACCTA 57.623 39.130 0.00 0.00 44.59 3.08
243 244 5.578157 ACAAAAGTTGTACCTGGACCTAT 57.422 39.130 0.00 0.00 43.27 2.57
244 245 5.313712 ACAAAAGTTGTACCTGGACCTATG 58.686 41.667 0.00 0.00 43.27 2.23
245 246 4.569719 AAAGTTGTACCTGGACCTATGG 57.430 45.455 0.00 0.00 0.00 2.74
246 247 3.200958 AGTTGTACCTGGACCTATGGT 57.799 47.619 0.00 8.89 39.44 3.55
247 248 9.798642 ACAAAAGTTGTACCTGGACCTATGGTC 62.799 44.444 0.00 8.14 46.15 4.02
256 257 3.376082 ACCTATGGTCACACCGTCT 57.624 52.632 0.00 0.00 42.58 4.18
257 258 1.183549 ACCTATGGTCACACCGTCTC 58.816 55.000 0.00 0.00 42.58 3.36
258 259 0.100682 CCTATGGTCACACCGTCTCG 59.899 60.000 0.00 0.00 42.58 4.04
259 260 1.092348 CTATGGTCACACCGTCTCGA 58.908 55.000 0.00 0.00 42.58 4.04
260 261 1.676529 CTATGGTCACACCGTCTCGAT 59.323 52.381 0.00 0.00 42.58 3.59
261 262 0.895530 ATGGTCACACCGTCTCGATT 59.104 50.000 0.00 0.00 42.58 3.34
262 263 0.677288 TGGTCACACCGTCTCGATTT 59.323 50.000 0.00 0.00 42.58 2.17
263 264 1.068474 GGTCACACCGTCTCGATTTG 58.932 55.000 0.00 0.00 0.00 2.32
264 265 1.068474 GTCACACCGTCTCGATTTGG 58.932 55.000 0.00 0.00 0.00 3.28
265 266 0.037697 TCACACCGTCTCGATTTGGG 60.038 55.000 0.00 0.00 0.00 4.12
266 267 0.320421 CACACCGTCTCGATTTGGGT 60.320 55.000 0.00 0.00 0.00 4.51
267 268 2.456000 CACCGTCTCGATTTGGGTG 58.544 57.895 9.67 9.67 41.81 4.61
268 269 2.358039 ACCGTCTCGATTTGGGTGA 58.642 52.632 0.00 0.00 0.00 4.02
269 270 0.037605 ACCGTCTCGATTTGGGTGAC 60.038 55.000 0.00 0.00 0.00 3.67
270 271 0.037697 CCGTCTCGATTTGGGTGACA 60.038 55.000 0.00 0.00 0.00 3.58
271 272 1.606994 CCGTCTCGATTTGGGTGACAA 60.607 52.381 0.00 0.00 37.28 3.18
280 281 2.131776 TTGGGTGACAAAAAGGACGT 57.868 45.000 0.00 0.00 35.79 4.34
281 282 1.670791 TGGGTGACAAAAAGGACGTC 58.329 50.000 7.13 7.13 0.00 4.34
282 283 1.210967 TGGGTGACAAAAAGGACGTCT 59.789 47.619 16.46 0.00 0.00 4.18
283 284 2.294979 GGGTGACAAAAAGGACGTCTT 58.705 47.619 16.46 4.52 37.28 3.01
284 285 2.289820 GGGTGACAAAAAGGACGTCTTC 59.710 50.000 16.46 0.00 33.94 2.87
285 286 3.203716 GGTGACAAAAAGGACGTCTTCT 58.796 45.455 16.46 1.50 33.94 2.85
286 287 3.247886 GGTGACAAAAAGGACGTCTTCTC 59.752 47.826 16.46 0.00 33.94 2.87
287 288 3.060473 GTGACAAAAAGGACGTCTTCTCG 60.060 47.826 16.46 2.87 33.94 4.04
288 289 3.121544 GACAAAAAGGACGTCTTCTCGT 58.878 45.455 16.46 6.16 46.88 4.18
289 290 2.864343 ACAAAAAGGACGTCTTCTCGTG 59.136 45.455 16.46 9.43 44.21 4.35
290 291 2.150397 AAAAGGACGTCTTCTCGTGG 57.850 50.000 16.46 0.00 44.21 4.94
291 292 1.038280 AAAGGACGTCTTCTCGTGGT 58.962 50.000 16.46 0.00 44.21 4.16
292 293 0.314302 AAGGACGTCTTCTCGTGGTG 59.686 55.000 16.46 0.00 44.21 4.17
293 294 0.822532 AGGACGTCTTCTCGTGGTGT 60.823 55.000 16.46 0.00 44.21 4.16
294 295 0.031721 GGACGTCTTCTCGTGGTGTT 59.968 55.000 16.46 0.00 44.21 3.32
295 296 1.406447 GACGTCTTCTCGTGGTGTTC 58.594 55.000 8.70 0.00 44.21 3.18
296 297 0.031721 ACGTCTTCTCGTGGTGTTCC 59.968 55.000 0.00 0.00 42.56 3.62
297 298 0.314302 CGTCTTCTCGTGGTGTTCCT 59.686 55.000 0.00 0.00 34.23 3.36
298 299 1.269621 CGTCTTCTCGTGGTGTTCCTT 60.270 52.381 0.00 0.00 34.23 3.36
299 300 2.802057 CGTCTTCTCGTGGTGTTCCTTT 60.802 50.000 0.00 0.00 34.23 3.11
300 301 2.801111 GTCTTCTCGTGGTGTTCCTTTC 59.199 50.000 0.00 0.00 34.23 2.62
301 302 2.698797 TCTTCTCGTGGTGTTCCTTTCT 59.301 45.455 0.00 0.00 34.23 2.52
302 303 2.814280 TCTCGTGGTGTTCCTTTCTC 57.186 50.000 0.00 0.00 34.23 2.87
303 304 2.317040 TCTCGTGGTGTTCCTTTCTCT 58.683 47.619 0.00 0.00 34.23 3.10
304 305 2.296471 TCTCGTGGTGTTCCTTTCTCTC 59.704 50.000 0.00 0.00 34.23 3.20
305 306 2.297597 CTCGTGGTGTTCCTTTCTCTCT 59.702 50.000 0.00 0.00 34.23 3.10
306 307 2.035961 TCGTGGTGTTCCTTTCTCTCTG 59.964 50.000 0.00 0.00 34.23 3.35
307 308 2.224066 CGTGGTGTTCCTTTCTCTCTGT 60.224 50.000 0.00 0.00 34.23 3.41
308 309 3.005472 CGTGGTGTTCCTTTCTCTCTGTA 59.995 47.826 0.00 0.00 34.23 2.74
309 310 4.308265 GTGGTGTTCCTTTCTCTCTGTAC 58.692 47.826 0.00 0.00 34.23 2.90
310 311 3.005472 TGGTGTTCCTTTCTCTCTGTACG 59.995 47.826 0.00 0.00 34.23 3.67
311 312 3.005578 GGTGTTCCTTTCTCTCTGTACGT 59.994 47.826 0.00 0.00 0.00 3.57
312 313 4.501058 GGTGTTCCTTTCTCTCTGTACGTT 60.501 45.833 0.00 0.00 0.00 3.99
313 314 4.444720 GTGTTCCTTTCTCTCTGTACGTTG 59.555 45.833 0.00 0.00 0.00 4.10
314 315 3.299340 TCCTTTCTCTCTGTACGTTGC 57.701 47.619 0.00 0.00 0.00 4.17
315 316 2.626266 TCCTTTCTCTCTGTACGTTGCA 59.374 45.455 0.00 0.00 0.00 4.08
316 317 2.731976 CCTTTCTCTCTGTACGTTGCAC 59.268 50.000 0.00 0.00 0.00 4.57
317 318 2.433868 TTCTCTCTGTACGTTGCACC 57.566 50.000 0.00 0.00 0.00 5.01
318 319 0.240145 TCTCTCTGTACGTTGCACCG 59.760 55.000 0.62 0.62 0.00 4.94
319 320 0.039437 CTCTCTGTACGTTGCACCGT 60.039 55.000 15.28 15.28 44.50 4.83
320 321 0.318360 TCTCTGTACGTTGCACCGTG 60.318 55.000 20.32 2.65 41.92 4.94
321 322 1.886861 CTCTGTACGTTGCACCGTGC 61.887 60.000 20.32 18.81 45.29 5.34
322 323 1.954146 CTGTACGTTGCACCGTGCT 60.954 57.895 23.54 6.64 45.31 4.40
323 324 2.158058 CTGTACGTTGCACCGTGCTG 62.158 60.000 23.54 19.51 45.31 4.41
324 325 3.342627 TACGTTGCACCGTGCTGC 61.343 61.111 20.32 14.73 45.31 5.25
325 326 3.800685 TACGTTGCACCGTGCTGCT 62.801 57.895 20.32 6.88 45.31 4.24
326 327 4.671549 CGTTGCACCGTGCTGCTG 62.672 66.667 23.52 7.94 45.31 4.41
327 328 3.585990 GTTGCACCGTGCTGCTGT 61.586 61.111 23.52 0.00 45.31 4.40
328 329 2.110006 TTGCACCGTGCTGCTGTA 59.890 55.556 23.52 0.00 45.31 2.74
329 330 1.524849 TTGCACCGTGCTGCTGTAA 60.525 52.632 23.52 6.35 45.31 2.41
330 331 0.888736 TTGCACCGTGCTGCTGTAAT 60.889 50.000 23.52 0.00 45.31 1.89
331 332 0.888736 TGCACCGTGCTGCTGTAATT 60.889 50.000 23.52 0.00 45.31 1.40
332 333 0.179189 GCACCGTGCTGCTGTAATTC 60.179 55.000 16.51 0.00 40.96 2.17
333 334 1.442769 CACCGTGCTGCTGTAATTCT 58.557 50.000 0.00 0.00 0.00 2.40
334 335 1.129251 CACCGTGCTGCTGTAATTCTG 59.871 52.381 0.00 0.00 0.00 3.02
335 336 1.270839 ACCGTGCTGCTGTAATTCTGT 60.271 47.619 0.00 0.00 0.00 3.41
336 337 2.028476 ACCGTGCTGCTGTAATTCTGTA 60.028 45.455 0.00 0.00 0.00 2.74
337 338 2.348666 CCGTGCTGCTGTAATTCTGTAC 59.651 50.000 0.00 0.00 0.00 2.90
338 339 3.254060 CGTGCTGCTGTAATTCTGTACT 58.746 45.455 0.00 0.00 0.00 2.73
339 340 3.304559 CGTGCTGCTGTAATTCTGTACTC 59.695 47.826 0.00 0.00 0.00 2.59
340 341 3.304559 GTGCTGCTGTAATTCTGTACTCG 59.695 47.826 0.00 0.00 0.00 4.18
341 342 2.282820 GCTGCTGTAATTCTGTACTCGC 59.717 50.000 0.00 0.00 0.00 5.03
342 343 3.775202 CTGCTGTAATTCTGTACTCGCT 58.225 45.455 0.00 0.00 0.00 4.93
343 344 3.511699 TGCTGTAATTCTGTACTCGCTG 58.488 45.455 0.00 0.00 0.00 5.18
344 345 2.282820 GCTGTAATTCTGTACTCGCTGC 59.717 50.000 0.00 0.00 0.00 5.25
345 346 3.775202 CTGTAATTCTGTACTCGCTGCT 58.225 45.455 0.00 0.00 0.00 4.24
346 347 4.177026 CTGTAATTCTGTACTCGCTGCTT 58.823 43.478 0.00 0.00 0.00 3.91
347 348 5.319140 TGTAATTCTGTACTCGCTGCTTA 57.681 39.130 0.00 0.00 0.00 3.09
348 349 5.902681 TGTAATTCTGTACTCGCTGCTTAT 58.097 37.500 0.00 0.00 0.00 1.73
349 350 5.748630 TGTAATTCTGTACTCGCTGCTTATG 59.251 40.000 0.00 0.00 0.00 1.90
350 351 2.209838 TCTGTACTCGCTGCTTATGC 57.790 50.000 0.00 0.00 40.20 3.14
364 365 4.685169 GCTTATGCAGCTGTTTGAGTAA 57.315 40.909 16.64 5.26 46.27 2.24
365 366 5.240713 GCTTATGCAGCTGTTTGAGTAAT 57.759 39.130 16.64 0.00 46.27 1.89
366 367 6.363577 GCTTATGCAGCTGTTTGAGTAATA 57.636 37.500 16.64 0.00 46.27 0.98
367 368 6.963796 GCTTATGCAGCTGTTTGAGTAATAT 58.036 36.000 16.64 0.00 46.27 1.28
368 369 8.087982 GCTTATGCAGCTGTTTGAGTAATATA 57.912 34.615 16.64 0.00 46.27 0.86
369 370 8.725148 GCTTATGCAGCTGTTTGAGTAATATAT 58.275 33.333 16.64 0.00 46.27 0.86
372 373 8.681486 ATGCAGCTGTTTGAGTAATATATTCA 57.319 30.769 16.64 0.00 0.00 2.57
373 374 8.146479 TGCAGCTGTTTGAGTAATATATTCAG 57.854 34.615 16.64 2.82 0.00 3.02
374 375 7.227314 TGCAGCTGTTTGAGTAATATATTCAGG 59.773 37.037 16.64 0.00 0.00 3.86
375 376 7.227512 GCAGCTGTTTGAGTAATATATTCAGGT 59.772 37.037 16.64 4.35 0.00 4.00
376 377 8.554528 CAGCTGTTTGAGTAATATATTCAGGTG 58.445 37.037 18.12 18.12 40.52 4.00
377 378 7.716998 AGCTGTTTGAGTAATATATTCAGGTGG 59.283 37.037 0.00 0.00 31.58 4.61
378 379 7.041098 GCTGTTTGAGTAATATATTCAGGTGGG 60.041 40.741 0.00 0.00 0.00 4.61
379 380 7.287061 TGTTTGAGTAATATATTCAGGTGGGG 58.713 38.462 0.00 0.00 0.00 4.96
380 381 7.128109 TGTTTGAGTAATATATTCAGGTGGGGA 59.872 37.037 0.00 0.00 0.00 4.81
381 382 6.681729 TGAGTAATATATTCAGGTGGGGAC 57.318 41.667 0.00 0.00 0.00 4.46
453 454 8.519492 AAGTTGTGACAATTAATTTGAATCCG 57.481 30.769 0.00 0.00 38.76 4.18
454 455 7.881142 AGTTGTGACAATTAATTTGAATCCGA 58.119 30.769 0.00 0.00 38.76 4.55
455 456 8.023128 AGTTGTGACAATTAATTTGAATCCGAG 58.977 33.333 0.00 0.00 38.76 4.63
456 457 6.851609 TGTGACAATTAATTTGAATCCGAGG 58.148 36.000 0.00 0.00 38.76 4.63
457 458 6.127758 TGTGACAATTAATTTGAATCCGAGGG 60.128 38.462 0.00 0.00 38.76 4.30
458 459 6.094881 GTGACAATTAATTTGAATCCGAGGGA 59.905 38.462 0.00 0.00 38.76 4.20
459 460 6.318648 TGACAATTAATTTGAATCCGAGGGAG 59.681 38.462 0.00 0.00 38.76 4.30
465 466 1.481871 TGAATCCGAGGGAGTACCAC 58.518 55.000 0.00 0.00 43.89 4.16
471 472 2.042162 TCCGAGGGAGTACCACTTTACT 59.958 50.000 0.00 0.00 43.89 2.24
472 473 2.830321 CCGAGGGAGTACCACTTTACTT 59.170 50.000 0.00 0.00 43.89 2.24
477 478 4.139038 GGGAGTACCACTTTACTTGCAAA 58.861 43.478 0.00 0.00 39.85 3.68
497 498 6.642950 TGCAAAAATAAAGTTTACATCCACGG 59.357 34.615 0.00 0.00 0.00 4.94
554 559 1.588404 CAAGGCTTCGCGTATGTACAG 59.412 52.381 5.77 0.00 0.00 2.74
561 566 2.353323 TCGCGTATGTACAGAGTCACT 58.647 47.619 5.77 0.00 0.00 3.41
612 617 3.902150 GCTTGAGCTAGAAACAAAACCC 58.098 45.455 0.00 0.00 38.21 4.11
690 711 0.663153 AACTTCTGTCTGTTTGGCGC 59.337 50.000 0.00 0.00 0.00 6.53
921 976 0.915904 CACAACAACAACAAGCAGCG 59.084 50.000 0.00 0.00 0.00 5.18
997 1085 2.813474 CGTCCGCGGCTGATTGAA 60.813 61.111 23.51 0.00 0.00 2.69
1033 1121 2.906458 CCATGAGCTCCTTCGCCT 59.094 61.111 12.15 0.00 0.00 5.52
1172 1366 3.251487 CCAAACAAACCCAAGGTACGTAG 59.749 47.826 0.00 0.00 33.12 3.51
1173 1367 4.128643 CAAACAAACCCAAGGTACGTAGA 58.871 43.478 0.00 0.00 33.12 2.59
1174 1368 3.391506 ACAAACCCAAGGTACGTAGAC 57.608 47.619 0.00 0.00 33.12 2.59
1175 1369 2.699846 ACAAACCCAAGGTACGTAGACA 59.300 45.455 0.00 0.00 33.12 3.41
1176 1370 3.062042 CAAACCCAAGGTACGTAGACAC 58.938 50.000 0.00 0.00 33.12 3.67
1177 1371 1.270550 AACCCAAGGTACGTAGACACG 59.729 52.381 0.00 0.00 44.59 4.49
1213 1415 0.588252 CATGTATAAGCAGCACGGCC 59.412 55.000 0.00 0.00 0.00 6.13
1214 1416 0.180171 ATGTATAAGCAGCACGGCCA 59.820 50.000 2.24 0.00 0.00 5.36
1215 1417 0.180171 TGTATAAGCAGCACGGCCAT 59.820 50.000 2.24 0.00 0.00 4.40
1217 1419 0.534877 TATAAGCAGCACGGCCATGG 60.535 55.000 7.63 7.63 0.00 3.66
1233 1436 1.065701 CATGGCGACGTAGCTAGACTT 59.934 52.381 20.15 0.00 37.29 3.01
1535 1742 1.501292 CATCATGAACGCCAACGCA 59.499 52.632 0.00 0.00 45.53 5.24
1627 1834 2.159707 CGCCCTTCATCAACGTGTAAAG 60.160 50.000 0.00 0.00 0.00 1.85
1634 1850 5.530519 TCATCAACGTGTAAAGCTGAATC 57.469 39.130 0.00 0.00 0.00 2.52
1640 1856 3.058914 ACGTGTAAAGCTGAATCTGTTGC 60.059 43.478 0.00 0.00 0.00 4.17
1656 1872 0.671163 TTGCCGACCGGATAACACAC 60.671 55.000 9.46 0.00 37.50 3.82
1680 2088 4.261825 CCTGTGCTTAGCTAGTAGGACATC 60.262 50.000 17.08 0.00 41.04 3.06
1681 2089 3.637229 TGTGCTTAGCTAGTAGGACATCC 59.363 47.826 13.88 0.00 37.73 3.51
1683 2091 2.563620 GCTTAGCTAGTAGGACATCCCC 59.436 54.545 0.00 0.00 36.42 4.81
1685 2093 4.508763 GCTTAGCTAGTAGGACATCCCCTA 60.509 50.000 0.00 0.00 37.74 3.53
1693 2101 3.708236 AGGACATCCCCTACTACATGT 57.292 47.619 2.69 2.69 34.07 3.21
1694 2102 4.827036 AGGACATCCCCTACTACATGTA 57.173 45.455 5.25 5.25 34.07 2.29
1695 2103 4.481072 AGGACATCCCCTACTACATGTAC 58.519 47.826 0.08 0.00 34.07 2.90
1700 2108 5.539193 ACATCCCCTACTACATGTACTTAGC 59.461 44.000 0.08 0.00 0.00 3.09
1701 2109 5.399052 TCCCCTACTACATGTACTTAGCT 57.601 43.478 0.08 0.00 0.00 3.32
1702 2110 6.520021 TCCCCTACTACATGTACTTAGCTA 57.480 41.667 0.08 0.00 0.00 3.32
1705 2113 7.293299 TCCCCTACTACATGTACTTAGCTAGTA 59.707 40.741 0.08 1.24 38.33 1.82
1706 2114 7.607223 CCCCTACTACATGTACTTAGCTAGTAG 59.393 44.444 16.26 16.26 39.98 2.57
1711 2119 8.932610 ACTACATGTACTTAGCTAGTAGTAGGA 58.067 37.037 14.64 3.48 39.98 2.94
1712 2120 9.206870 CTACATGTACTTAGCTAGTAGTAGGAC 57.793 40.741 0.08 2.21 39.98 3.85
1713 2121 7.571919 ACATGTACTTAGCTAGTAGTAGGACA 58.428 38.462 9.38 9.38 39.98 4.02
1714 2122 8.219178 ACATGTACTTAGCTAGTAGTAGGACAT 58.781 37.037 12.60 12.60 39.98 3.06
1715 2123 8.508062 CATGTACTTAGCTAGTAGTAGGACATG 58.492 40.741 23.76 23.76 39.98 3.21
1716 2124 7.571919 TGTACTTAGCTAGTAGTAGGACATGT 58.428 38.462 0.00 0.00 39.98 3.21
1717 2125 8.708378 TGTACTTAGCTAGTAGTAGGACATGTA 58.292 37.037 0.00 0.00 39.98 2.29
1718 2126 9.553064 GTACTTAGCTAGTAGTAGGACATGTAA 57.447 37.037 0.00 0.00 39.98 2.41
1767 2183 5.163754 GCACTGCTAATTAAAGACGGTTCAT 60.164 40.000 0.00 0.00 0.00 2.57
1791 2207 7.215719 TCTTTCTTTCTCTCACTCGTATTCA 57.784 36.000 0.00 0.00 0.00 2.57
1876 2996 3.249687 CCAGAACTTGGCCTGGTAC 57.750 57.895 3.32 0.00 43.71 3.34
1902 3022 0.239082 CAAGCAGACTCGCATTTGCA 59.761 50.000 3.13 0.00 42.21 4.08
1904 3024 1.171308 AGCAGACTCGCATTTGCAAT 58.829 45.000 0.00 0.00 42.21 3.56
1966 3086 5.420104 ACTTCTTCCCTTTTGATAGCATTGG 59.580 40.000 0.00 0.00 0.00 3.16
2029 3897 6.951256 TTGTGTTAGACAATGAGAATCGAG 57.049 37.500 0.00 0.00 39.78 4.04
2037 3907 4.825422 ACAATGAGAATCGAGCAGAAGAA 58.175 39.130 0.00 0.00 38.61 2.52
2047 3917 4.748892 TCGAGCAGAAGAAAGTGGAATAG 58.251 43.478 0.00 0.00 0.00 1.73
2100 4531 4.916983 TGAACAAAATACACAGCAAGCT 57.083 36.364 0.00 0.00 0.00 3.74
2260 6509 6.402222 GTGGAACTCATCTGAAGTTCAGTAT 58.598 40.000 27.83 18.36 44.58 2.12
2261 6510 7.548097 GTGGAACTCATCTGAAGTTCAGTATA 58.452 38.462 27.83 13.03 44.58 1.47
2390 8390 5.286438 GCCAGGGTTTAAACTTGTAAACAG 58.714 41.667 17.50 5.04 43.04 3.16
2485 8891 2.952714 CCAAAGGGAAGCTCACCTG 58.047 57.895 9.69 0.38 37.13 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.487189 CCTTTAGCATGATCAAACACTTCATTC 59.513 37.037 0.00 0.00 0.00 2.67
2 3 7.318141 CCTTTAGCATGATCAAACACTTCATT 58.682 34.615 0.00 0.00 0.00 2.57
3 4 6.626623 GCCTTTAGCATGATCAAACACTTCAT 60.627 38.462 0.00 0.00 42.97 2.57
4 5 5.335897 GCCTTTAGCATGATCAAACACTTCA 60.336 40.000 0.00 0.00 42.97 3.02
5 6 5.098211 GCCTTTAGCATGATCAAACACTTC 58.902 41.667 0.00 0.00 42.97 3.01
6 7 5.064441 GCCTTTAGCATGATCAAACACTT 57.936 39.130 0.00 0.00 42.97 3.16
7 8 4.708726 GCCTTTAGCATGATCAAACACT 57.291 40.909 0.00 0.00 42.97 3.55
20 21 0.106894 ATCGGTGCCTAGCCTTTAGC 59.893 55.000 0.00 0.00 44.25 3.09
21 22 1.541233 CCATCGGTGCCTAGCCTTTAG 60.541 57.143 0.00 0.00 0.00 1.85
22 23 0.468226 CCATCGGTGCCTAGCCTTTA 59.532 55.000 0.00 0.00 0.00 1.85
23 24 1.224592 CCATCGGTGCCTAGCCTTT 59.775 57.895 0.00 0.00 0.00 3.11
24 25 1.689233 TCCATCGGTGCCTAGCCTT 60.689 57.895 0.00 0.00 0.00 4.35
25 26 2.041922 TCCATCGGTGCCTAGCCT 60.042 61.111 0.00 0.00 0.00 4.58
26 27 2.423446 CTCCATCGGTGCCTAGCC 59.577 66.667 0.00 0.00 0.00 3.93
27 28 2.280457 GCTCCATCGGTGCCTAGC 60.280 66.667 0.00 0.00 36.35 3.42
28 29 2.028190 CGCTCCATCGGTGCCTAG 59.972 66.667 0.00 0.00 38.79 3.02
29 30 3.536917 CCGCTCCATCGGTGCCTA 61.537 66.667 0.00 0.00 44.18 3.93
36 37 3.576356 AAATGCGCCGCTCCATCG 61.576 61.111 11.67 0.00 0.00 3.84
37 38 2.025156 CAAATGCGCCGCTCCATC 59.975 61.111 11.67 0.00 0.00 3.51
38 39 4.197498 GCAAATGCGCCGCTCCAT 62.197 61.111 11.67 0.00 0.00 3.41
48 49 1.542544 GTCTGCAATCTCGCAAATGC 58.457 50.000 0.00 0.00 42.45 3.56
49 50 1.394572 TCGTCTGCAATCTCGCAAATG 59.605 47.619 0.00 0.00 42.45 2.32
50 51 1.394917 GTCGTCTGCAATCTCGCAAAT 59.605 47.619 0.00 0.00 42.45 2.32
51 52 0.790207 GTCGTCTGCAATCTCGCAAA 59.210 50.000 0.00 0.00 42.45 3.68
52 53 1.344226 CGTCGTCTGCAATCTCGCAA 61.344 55.000 0.00 0.00 42.45 4.85
53 54 1.801512 CGTCGTCTGCAATCTCGCA 60.802 57.895 0.00 0.00 40.32 5.10
54 55 0.522705 TACGTCGTCTGCAATCTCGC 60.523 55.000 0.00 0.00 0.00 5.03
55 56 2.037649 GATACGTCGTCTGCAATCTCG 58.962 52.381 0.00 0.00 0.00 4.04
56 57 3.066369 TGATACGTCGTCTGCAATCTC 57.934 47.619 0.00 0.00 0.00 2.75
57 58 3.316588 AGATGATACGTCGTCTGCAATCT 59.683 43.478 0.00 2.37 46.46 2.40
58 59 3.633235 AGATGATACGTCGTCTGCAATC 58.367 45.455 0.00 0.00 46.46 2.67
59 60 3.717400 AGATGATACGTCGTCTGCAAT 57.283 42.857 0.00 0.00 46.46 3.56
65 66 3.546670 GGTGTTGAAGATGATACGTCGTC 59.453 47.826 0.00 0.00 40.09 4.20
66 67 3.192844 AGGTGTTGAAGATGATACGTCGT 59.807 43.478 2.21 2.21 0.00 4.34
67 68 3.770666 AGGTGTTGAAGATGATACGTCG 58.229 45.455 0.00 0.00 0.00 5.12
68 69 5.168569 TCAAGGTGTTGAAGATGATACGTC 58.831 41.667 0.00 0.00 39.85 4.34
69 70 5.147330 TCAAGGTGTTGAAGATGATACGT 57.853 39.130 0.00 0.00 39.85 3.57
70 71 7.166628 GTATCAAGGTGTTGAAGATGATACG 57.833 40.000 7.67 0.00 45.88 3.06
71 72 9.469807 CTAGTATCAAGGTGTTGAAGATGATAC 57.530 37.037 13.20 13.20 45.88 2.24
72 73 9.421399 TCTAGTATCAAGGTGTTGAAGATGATA 57.579 33.333 0.00 0.00 45.88 2.15
73 74 8.311395 TCTAGTATCAAGGTGTTGAAGATGAT 57.689 34.615 0.00 0.00 45.88 2.45
74 75 7.718334 TCTAGTATCAAGGTGTTGAAGATGA 57.282 36.000 0.00 0.00 45.88 2.92
75 76 8.777865 TTTCTAGTATCAAGGTGTTGAAGATG 57.222 34.615 0.00 0.00 45.88 2.90
76 77 9.442047 CTTTTCTAGTATCAAGGTGTTGAAGAT 57.558 33.333 0.00 0.00 45.88 2.40
77 78 8.647796 TCTTTTCTAGTATCAAGGTGTTGAAGA 58.352 33.333 0.00 0.00 45.88 2.87
78 79 8.713271 GTCTTTTCTAGTATCAAGGTGTTGAAG 58.287 37.037 0.00 0.00 45.88 3.02
79 80 8.429641 AGTCTTTTCTAGTATCAAGGTGTTGAA 58.570 33.333 0.00 0.00 45.88 2.69
80 81 7.963532 AGTCTTTTCTAGTATCAAGGTGTTGA 58.036 34.615 0.00 0.00 46.81 3.18
81 82 8.608844 AAGTCTTTTCTAGTATCAAGGTGTTG 57.391 34.615 0.00 0.00 34.67 3.33
82 83 8.429641 TGAAGTCTTTTCTAGTATCAAGGTGTT 58.570 33.333 0.00 0.00 0.00 3.32
83 84 7.963532 TGAAGTCTTTTCTAGTATCAAGGTGT 58.036 34.615 0.00 0.00 0.00 4.16
84 85 8.091449 ACTGAAGTCTTTTCTAGTATCAAGGTG 58.909 37.037 0.00 0.00 0.00 4.00
85 86 8.091449 CACTGAAGTCTTTTCTAGTATCAAGGT 58.909 37.037 0.00 0.00 0.00 3.50
86 87 8.307483 TCACTGAAGTCTTTTCTAGTATCAAGG 58.693 37.037 0.00 0.00 0.00 3.61
87 88 9.868277 ATCACTGAAGTCTTTTCTAGTATCAAG 57.132 33.333 0.00 0.00 0.00 3.02
94 95 9.575783 GGTAGTAATCACTGAAGTCTTTTCTAG 57.424 37.037 0.00 0.00 36.14 2.43
95 96 8.242053 CGGTAGTAATCACTGAAGTCTTTTCTA 58.758 37.037 0.00 0.00 36.14 2.10
96 97 7.091443 CGGTAGTAATCACTGAAGTCTTTTCT 58.909 38.462 0.00 0.00 36.14 2.52
97 98 6.867293 ACGGTAGTAATCACTGAAGTCTTTTC 59.133 38.462 0.00 0.00 36.14 2.29
98 99 6.645415 CACGGTAGTAATCACTGAAGTCTTTT 59.355 38.462 0.00 0.00 36.14 2.27
99 100 6.015688 TCACGGTAGTAATCACTGAAGTCTTT 60.016 38.462 0.00 0.00 36.14 2.52
100 101 5.475909 TCACGGTAGTAATCACTGAAGTCTT 59.524 40.000 0.00 0.00 36.14 3.01
101 102 5.008331 TCACGGTAGTAATCACTGAAGTCT 58.992 41.667 0.00 0.00 36.14 3.24
102 103 5.306532 TCACGGTAGTAATCACTGAAGTC 57.693 43.478 0.00 0.00 36.14 3.01
103 104 5.916661 ATCACGGTAGTAATCACTGAAGT 57.083 39.130 0.00 0.00 36.14 3.01
104 105 7.649057 TGATATCACGGTAGTAATCACTGAAG 58.351 38.462 0.00 0.00 36.14 3.02
105 106 7.576861 TGATATCACGGTAGTAATCACTGAA 57.423 36.000 0.00 0.00 36.14 3.02
106 107 7.761038 ATGATATCACGGTAGTAATCACTGA 57.239 36.000 7.78 0.00 36.14 3.41
107 108 8.818141 AAATGATATCACGGTAGTAATCACTG 57.182 34.615 7.78 0.00 36.14 3.66
108 109 9.832445 AAAAATGATATCACGGTAGTAATCACT 57.168 29.630 7.78 0.00 38.91 3.41
109 110 9.864034 CAAAAATGATATCACGGTAGTAATCAC 57.136 33.333 7.78 0.00 30.89 3.06
110 111 9.051679 CCAAAAATGATATCACGGTAGTAATCA 57.948 33.333 7.78 0.00 31.91 2.57
111 112 8.015658 GCCAAAAATGATATCACGGTAGTAATC 58.984 37.037 7.78 0.00 0.00 1.75
112 113 7.500892 TGCCAAAAATGATATCACGGTAGTAAT 59.499 33.333 7.78 0.00 0.00 1.89
113 114 6.824196 TGCCAAAAATGATATCACGGTAGTAA 59.176 34.615 7.78 0.00 0.00 2.24
114 115 6.259167 GTGCCAAAAATGATATCACGGTAGTA 59.741 38.462 7.78 0.00 0.00 1.82
115 116 5.065988 GTGCCAAAAATGATATCACGGTAGT 59.934 40.000 7.78 0.00 0.00 2.73
116 117 5.065859 TGTGCCAAAAATGATATCACGGTAG 59.934 40.000 7.78 0.00 0.00 3.18
117 118 4.944317 TGTGCCAAAAATGATATCACGGTA 59.056 37.500 7.78 0.98 0.00 4.02
118 119 3.761218 TGTGCCAAAAATGATATCACGGT 59.239 39.130 7.78 0.00 0.00 4.83
119 120 4.353737 CTGTGCCAAAAATGATATCACGG 58.646 43.478 7.78 5.21 0.00 4.94
120 121 4.353737 CCTGTGCCAAAAATGATATCACG 58.646 43.478 7.78 0.00 0.00 4.35
121 122 4.685924 CCCTGTGCCAAAAATGATATCAC 58.314 43.478 7.78 0.00 0.00 3.06
122 123 3.132646 GCCCTGTGCCAAAAATGATATCA 59.867 43.478 8.10 8.10 0.00 2.15
123 124 3.721035 GCCCTGTGCCAAAAATGATATC 58.279 45.455 0.00 0.00 0.00 1.63
124 125 3.825143 GCCCTGTGCCAAAAATGATAT 57.175 42.857 0.00 0.00 0.00 1.63
136 137 1.780503 AAATCCATTAGGCCCTGTGC 58.219 50.000 0.00 0.00 40.16 4.57
137 138 2.695147 GGAAAATCCATTAGGCCCTGTG 59.305 50.000 0.00 0.00 36.28 3.66
138 139 2.686715 CGGAAAATCCATTAGGCCCTGT 60.687 50.000 0.00 0.00 35.91 4.00
139 140 1.956477 CGGAAAATCCATTAGGCCCTG 59.044 52.381 0.00 0.00 35.91 4.45
140 141 1.133482 CCGGAAAATCCATTAGGCCCT 60.133 52.381 0.00 0.00 35.91 5.19
141 142 1.328279 CCGGAAAATCCATTAGGCCC 58.672 55.000 0.00 0.00 35.91 5.80
142 143 0.673985 GCCGGAAAATCCATTAGGCC 59.326 55.000 5.05 0.00 35.91 5.19
143 144 1.692411 AGCCGGAAAATCCATTAGGC 58.308 50.000 5.05 5.25 43.07 3.93
144 145 4.351874 TCTAGCCGGAAAATCCATTAGG 57.648 45.455 5.05 0.00 35.91 2.69
145 146 6.693315 TTTTCTAGCCGGAAAATCCATTAG 57.307 37.500 5.05 0.00 39.37 1.73
146 147 6.127563 GGTTTTTCTAGCCGGAAAATCCATTA 60.128 38.462 22.98 6.99 45.21 1.90
147 148 5.337250 GGTTTTTCTAGCCGGAAAATCCATT 60.337 40.000 22.98 0.00 45.21 3.16
148 149 4.159693 GGTTTTTCTAGCCGGAAAATCCAT 59.840 41.667 22.98 0.00 45.21 3.41
149 150 3.508402 GGTTTTTCTAGCCGGAAAATCCA 59.492 43.478 22.98 7.96 45.21 3.41
150 151 3.762288 AGGTTTTTCTAGCCGGAAAATCC 59.238 43.478 21.68 21.68 45.68 3.01
151 152 4.700692 AGAGGTTTTTCTAGCCGGAAAATC 59.299 41.667 5.05 2.61 42.38 2.17
152 153 4.663334 AGAGGTTTTTCTAGCCGGAAAAT 58.337 39.130 5.05 0.00 42.38 1.82
153 154 4.094830 AGAGGTTTTTCTAGCCGGAAAA 57.905 40.909 5.05 0.00 41.54 2.29
154 155 3.782656 AGAGGTTTTTCTAGCCGGAAA 57.217 42.857 5.05 0.00 33.98 3.13
155 156 4.895668 TTAGAGGTTTTTCTAGCCGGAA 57.104 40.909 5.05 0.00 31.68 4.30
156 157 4.224370 ACATTAGAGGTTTTTCTAGCCGGA 59.776 41.667 5.05 0.00 31.68 5.14
157 158 4.514401 ACATTAGAGGTTTTTCTAGCCGG 58.486 43.478 0.00 0.00 31.68 6.13
158 159 5.875359 AGAACATTAGAGGTTTTTCTAGCCG 59.125 40.000 0.00 0.00 31.68 5.52
159 160 7.175119 ACAAGAACATTAGAGGTTTTTCTAGCC 59.825 37.037 0.00 0.00 31.68 3.93
160 161 8.100508 ACAAGAACATTAGAGGTTTTTCTAGC 57.899 34.615 0.00 0.00 31.68 3.42
178 179 9.064833 GGGAACTCCTGACTTGTTAACAAGAAC 62.065 44.444 41.11 32.93 44.59 3.01
179 180 7.133824 GGGAACTCCTGACTTGTTAACAAGAA 61.134 42.308 41.11 29.78 44.59 2.52
180 181 5.686650 GGGAACTCCTGACTTGTTAACAAGA 60.687 44.000 41.11 25.58 44.59 3.02
181 182 4.515567 GGGAACTCCTGACTTGTTAACAAG 59.484 45.833 35.74 35.74 45.80 3.16
182 183 4.165372 AGGGAACTCCTGACTTGTTAACAA 59.835 41.667 19.53 19.53 46.07 2.83
183 184 3.714798 AGGGAACTCCTGACTTGTTAACA 59.285 43.478 3.59 3.59 46.07 2.41
184 185 4.353383 AGGGAACTCCTGACTTGTTAAC 57.647 45.455 0.00 0.00 46.07 2.01
195 196 7.463295 TTTACCTTCCTATAAAAGGGAACTCCT 59.537 37.037 14.89 0.00 44.63 3.69
196 197 5.712084 ACCTTCCTATAAAAGGGAACTCC 57.288 43.478 14.89 0.00 46.32 3.85
197 198 8.105197 TGTTTACCTTCCTATAAAAGGGAACTC 58.895 37.037 20.82 14.16 44.63 3.01
198 199 7.992295 TGTTTACCTTCCTATAAAAGGGAACT 58.008 34.615 20.82 7.49 44.63 3.01
199 200 8.640063 TTGTTTACCTTCCTATAAAAGGGAAC 57.360 34.615 14.89 16.37 44.63 3.62
200 201 9.657728 TTTTGTTTACCTTCCTATAAAAGGGAA 57.342 29.630 14.89 11.14 46.32 3.97
201 202 9.304335 CTTTTGTTTACCTTCCTATAAAAGGGA 57.696 33.333 14.89 6.49 46.32 4.20
202 203 9.085645 ACTTTTGTTTACCTTCCTATAAAAGGG 57.914 33.333 14.89 0.92 46.32 3.95
208 209 9.506018 GGTACAACTTTTGTTTACCTTCCTATA 57.494 33.333 0.00 0.00 42.22 1.31
209 210 8.222637 AGGTACAACTTTTGTTTACCTTCCTAT 58.777 33.333 7.44 0.00 44.37 2.57
210 211 7.499895 CAGGTACAACTTTTGTTTACCTTCCTA 59.500 37.037 9.78 0.00 44.37 2.94
211 212 6.320418 CAGGTACAACTTTTGTTTACCTTCCT 59.680 38.462 9.78 0.00 44.37 3.36
212 213 6.460537 CCAGGTACAACTTTTGTTTACCTTCC 60.461 42.308 9.78 0.00 44.37 3.46
213 214 6.319405 TCCAGGTACAACTTTTGTTTACCTTC 59.681 38.462 9.78 0.00 44.37 3.46
214 215 6.095860 GTCCAGGTACAACTTTTGTTTACCTT 59.904 38.462 9.78 0.00 44.37 3.50
215 216 5.591472 GTCCAGGTACAACTTTTGTTTACCT 59.409 40.000 7.44 7.44 45.75 3.08
216 217 5.221106 GGTCCAGGTACAACTTTTGTTTACC 60.221 44.000 0.00 0.28 42.22 2.85
217 218 5.591472 AGGTCCAGGTACAACTTTTGTTTAC 59.409 40.000 0.00 0.00 42.22 2.01
218 219 5.757988 AGGTCCAGGTACAACTTTTGTTTA 58.242 37.500 0.00 0.00 42.22 2.01
219 220 4.606210 AGGTCCAGGTACAACTTTTGTTT 58.394 39.130 0.00 0.00 42.22 2.83
220 221 4.245251 AGGTCCAGGTACAACTTTTGTT 57.755 40.909 0.00 0.00 42.22 2.83
221 222 9.798642 GACCATAGGTCCAGGTACAACTTTTGT 62.799 44.444 4.85 0.00 46.19 2.83
222 223 4.700213 CCATAGGTCCAGGTACAACTTTTG 59.300 45.833 0.00 0.00 0.00 2.44
223 224 4.352893 ACCATAGGTCCAGGTACAACTTTT 59.647 41.667 0.00 0.00 32.92 2.27
224 225 3.914435 ACCATAGGTCCAGGTACAACTTT 59.086 43.478 0.00 0.00 32.92 2.66
225 226 3.518303 GACCATAGGTCCAGGTACAACTT 59.482 47.826 4.85 0.00 46.19 2.66
226 227 3.105283 GACCATAGGTCCAGGTACAACT 58.895 50.000 4.85 0.00 46.19 3.16
227 228 3.538634 GACCATAGGTCCAGGTACAAC 57.461 52.381 4.85 0.00 46.19 3.32
238 239 1.183549 GAGACGGTGTGACCATAGGT 58.816 55.000 0.00 0.00 38.47 3.08
239 240 0.100682 CGAGACGGTGTGACCATAGG 59.899 60.000 0.00 0.00 38.47 2.57
240 241 1.092348 TCGAGACGGTGTGACCATAG 58.908 55.000 0.00 0.00 38.47 2.23
241 242 1.758936 ATCGAGACGGTGTGACCATA 58.241 50.000 0.00 0.00 38.47 2.74
242 243 0.895530 AATCGAGACGGTGTGACCAT 59.104 50.000 0.00 0.00 38.47 3.55
243 244 0.677288 AAATCGAGACGGTGTGACCA 59.323 50.000 0.00 0.00 38.47 4.02
244 245 1.068474 CAAATCGAGACGGTGTGACC 58.932 55.000 0.00 0.00 34.05 4.02
245 246 1.068474 CCAAATCGAGACGGTGTGAC 58.932 55.000 0.00 0.00 0.00 3.67
246 247 0.037697 CCCAAATCGAGACGGTGTGA 60.038 55.000 0.00 0.00 0.00 3.58
247 248 0.320421 ACCCAAATCGAGACGGTGTG 60.320 55.000 0.00 0.00 0.00 3.82
248 249 0.320421 CACCCAAATCGAGACGGTGT 60.320 55.000 13.01 0.00 39.33 4.16
249 250 0.037697 TCACCCAAATCGAGACGGTG 60.038 55.000 14.42 14.42 44.40 4.94
250 251 0.037605 GTCACCCAAATCGAGACGGT 60.038 55.000 0.00 0.00 0.00 4.83
251 252 0.037697 TGTCACCCAAATCGAGACGG 60.038 55.000 0.00 0.00 32.08 4.79
252 253 1.790755 TTGTCACCCAAATCGAGACG 58.209 50.000 0.00 0.00 32.08 4.18
253 254 4.537015 CTTTTTGTCACCCAAATCGAGAC 58.463 43.478 0.00 0.00 42.45 3.36
254 255 3.568007 CCTTTTTGTCACCCAAATCGAGA 59.432 43.478 0.00 0.00 42.45 4.04
255 256 3.568007 TCCTTTTTGTCACCCAAATCGAG 59.432 43.478 0.00 0.00 42.45 4.04
256 257 3.316868 GTCCTTTTTGTCACCCAAATCGA 59.683 43.478 0.00 0.00 42.45 3.59
257 258 3.638484 GTCCTTTTTGTCACCCAAATCG 58.362 45.455 0.00 0.00 42.45 3.34
258 259 3.067601 ACGTCCTTTTTGTCACCCAAATC 59.932 43.478 0.00 0.00 42.45 2.17
259 260 3.028130 ACGTCCTTTTTGTCACCCAAAT 58.972 40.909 0.00 0.00 42.45 2.32
260 261 2.424246 GACGTCCTTTTTGTCACCCAAA 59.576 45.455 3.51 0.00 41.25 3.28
261 262 2.018515 GACGTCCTTTTTGTCACCCAA 58.981 47.619 3.51 0.00 32.91 4.12
262 263 1.210967 AGACGTCCTTTTTGTCACCCA 59.789 47.619 13.01 0.00 35.09 4.51
263 264 1.963172 AGACGTCCTTTTTGTCACCC 58.037 50.000 13.01 0.00 35.09 4.61
264 265 3.203716 AGAAGACGTCCTTTTTGTCACC 58.796 45.455 13.01 0.00 34.68 4.02
265 266 3.060473 CGAGAAGACGTCCTTTTTGTCAC 60.060 47.826 13.01 0.00 34.68 3.67
266 267 3.120792 CGAGAAGACGTCCTTTTTGTCA 58.879 45.455 13.01 0.00 34.68 3.58
267 268 3.060473 CACGAGAAGACGTCCTTTTTGTC 60.060 47.826 13.01 7.12 44.76 3.18
268 269 2.864343 CACGAGAAGACGTCCTTTTTGT 59.136 45.455 13.01 8.35 44.76 2.83
269 270 2.221055 CCACGAGAAGACGTCCTTTTTG 59.779 50.000 13.01 7.76 44.76 2.44
270 271 2.159000 ACCACGAGAAGACGTCCTTTTT 60.159 45.455 13.01 0.00 44.76 1.94
271 272 1.411612 ACCACGAGAAGACGTCCTTTT 59.588 47.619 13.01 0.00 44.76 2.27
272 273 1.038280 ACCACGAGAAGACGTCCTTT 58.962 50.000 13.01 0.00 44.76 3.11
273 274 0.314302 CACCACGAGAAGACGTCCTT 59.686 55.000 13.01 5.94 44.76 3.36
274 275 0.822532 ACACCACGAGAAGACGTCCT 60.823 55.000 13.01 2.45 44.76 3.85
275 276 0.031721 AACACCACGAGAAGACGTCC 59.968 55.000 13.01 0.00 44.76 4.79
276 277 1.406447 GAACACCACGAGAAGACGTC 58.594 55.000 7.70 7.70 44.76 4.34
278 279 0.314302 AGGAACACCACGAGAAGACG 59.686 55.000 0.00 0.00 39.31 4.18
279 280 2.528041 AAGGAACACCACGAGAAGAC 57.472 50.000 0.00 0.00 0.00 3.01
280 281 2.698797 AGAAAGGAACACCACGAGAAGA 59.301 45.455 0.00 0.00 0.00 2.87
281 282 3.060602 GAGAAAGGAACACCACGAGAAG 58.939 50.000 0.00 0.00 0.00 2.85
282 283 2.698797 AGAGAAAGGAACACCACGAGAA 59.301 45.455 0.00 0.00 0.00 2.87
283 284 2.296471 GAGAGAAAGGAACACCACGAGA 59.704 50.000 0.00 0.00 0.00 4.04
284 285 2.297597 AGAGAGAAAGGAACACCACGAG 59.702 50.000 0.00 0.00 0.00 4.18
285 286 2.035961 CAGAGAGAAAGGAACACCACGA 59.964 50.000 0.00 0.00 0.00 4.35
286 287 2.224066 ACAGAGAGAAAGGAACACCACG 60.224 50.000 0.00 0.00 0.00 4.94
287 288 3.477210 ACAGAGAGAAAGGAACACCAC 57.523 47.619 0.00 0.00 0.00 4.16
288 289 3.005472 CGTACAGAGAGAAAGGAACACCA 59.995 47.826 0.00 0.00 0.00 4.17
289 290 3.005578 ACGTACAGAGAGAAAGGAACACC 59.994 47.826 0.00 0.00 0.00 4.16
290 291 4.240175 ACGTACAGAGAGAAAGGAACAC 57.760 45.455 0.00 0.00 0.00 3.32
291 292 4.617959 CAACGTACAGAGAGAAAGGAACA 58.382 43.478 0.00 0.00 0.00 3.18
292 293 3.429207 GCAACGTACAGAGAGAAAGGAAC 59.571 47.826 0.00 0.00 0.00 3.62
293 294 3.069016 TGCAACGTACAGAGAGAAAGGAA 59.931 43.478 0.00 0.00 0.00 3.36
294 295 2.626266 TGCAACGTACAGAGAGAAAGGA 59.374 45.455 0.00 0.00 0.00 3.36
295 296 2.731976 GTGCAACGTACAGAGAGAAAGG 59.268 50.000 0.00 0.00 0.00 3.11
296 297 2.731976 GGTGCAACGTACAGAGAGAAAG 59.268 50.000 0.00 0.00 38.12 2.62
297 298 2.750948 GGTGCAACGTACAGAGAGAAA 58.249 47.619 0.00 0.00 38.12 2.52
298 299 1.335597 CGGTGCAACGTACAGAGAGAA 60.336 52.381 17.95 0.00 38.12 2.87
299 300 0.240145 CGGTGCAACGTACAGAGAGA 59.760 55.000 17.95 0.00 38.12 3.10
300 301 0.039437 ACGGTGCAACGTACAGAGAG 60.039 55.000 31.50 0.00 46.58 3.20
301 302 0.318360 CACGGTGCAACGTACAGAGA 60.318 55.000 31.94 0.00 46.75 3.10
302 303 1.886861 GCACGGTGCAACGTACAGAG 61.887 60.000 31.94 18.51 46.75 3.35
303 304 1.952133 GCACGGTGCAACGTACAGA 60.952 57.895 31.94 0.00 46.75 3.41
304 305 2.549282 GCACGGTGCAACGTACAG 59.451 61.111 31.94 19.33 46.75 2.74
315 316 1.270839 ACAGAATTACAGCAGCACGGT 60.271 47.619 0.00 0.00 0.00 4.83
316 317 1.442769 ACAGAATTACAGCAGCACGG 58.557 50.000 0.00 0.00 0.00 4.94
317 318 3.254060 AGTACAGAATTACAGCAGCACG 58.746 45.455 0.00 0.00 0.00 5.34
318 319 3.304559 CGAGTACAGAATTACAGCAGCAC 59.695 47.826 0.00 0.00 0.00 4.40
319 320 3.511699 CGAGTACAGAATTACAGCAGCA 58.488 45.455 0.00 0.00 0.00 4.41
320 321 2.282820 GCGAGTACAGAATTACAGCAGC 59.717 50.000 0.00 0.00 31.88 5.25
321 322 3.549471 CAGCGAGTACAGAATTACAGCAG 59.451 47.826 0.00 0.00 33.15 4.24
322 323 3.511699 CAGCGAGTACAGAATTACAGCA 58.488 45.455 0.00 0.00 33.15 4.41
323 324 2.282820 GCAGCGAGTACAGAATTACAGC 59.717 50.000 0.00 0.00 0.00 4.40
324 325 3.775202 AGCAGCGAGTACAGAATTACAG 58.225 45.455 0.00 0.00 0.00 2.74
325 326 3.868757 AGCAGCGAGTACAGAATTACA 57.131 42.857 0.00 0.00 0.00 2.41
326 327 5.332656 GCATAAGCAGCGAGTACAGAATTAC 60.333 44.000 0.00 0.00 41.58 1.89
327 328 4.745125 GCATAAGCAGCGAGTACAGAATTA 59.255 41.667 0.00 0.00 41.58 1.40
328 329 3.557595 GCATAAGCAGCGAGTACAGAATT 59.442 43.478 0.00 0.00 41.58 2.17
329 330 3.126831 GCATAAGCAGCGAGTACAGAAT 58.873 45.455 0.00 0.00 41.58 2.40
330 331 2.540515 GCATAAGCAGCGAGTACAGAA 58.459 47.619 0.00 0.00 41.58 3.02
331 332 2.209838 GCATAAGCAGCGAGTACAGA 57.790 50.000 0.00 0.00 41.58 3.41
346 347 9.777297 TGAATATATTACTCAAACAGCTGCATA 57.223 29.630 15.27 0.00 0.00 3.14
347 348 8.681486 TGAATATATTACTCAAACAGCTGCAT 57.319 30.769 15.27 0.00 0.00 3.96
348 349 7.227314 CCTGAATATATTACTCAAACAGCTGCA 59.773 37.037 15.27 0.00 0.00 4.41
349 350 7.227512 ACCTGAATATATTACTCAAACAGCTGC 59.772 37.037 15.27 0.00 0.00 5.25
350 351 8.554528 CACCTGAATATATTACTCAAACAGCTG 58.445 37.037 13.48 13.48 0.00 4.24
351 352 7.716998 CCACCTGAATATATTACTCAAACAGCT 59.283 37.037 0.00 0.00 0.00 4.24
352 353 7.041098 CCCACCTGAATATATTACTCAAACAGC 60.041 40.741 0.00 0.00 0.00 4.40
353 354 7.445402 CCCCACCTGAATATATTACTCAAACAG 59.555 40.741 0.00 0.07 0.00 3.16
354 355 7.128109 TCCCCACCTGAATATATTACTCAAACA 59.872 37.037 0.00 0.00 0.00 2.83
355 356 7.444487 GTCCCCACCTGAATATATTACTCAAAC 59.556 40.741 0.00 0.00 0.00 2.93
356 357 7.420913 GGTCCCCACCTGAATATATTACTCAAA 60.421 40.741 0.00 0.00 40.00 2.69
357 358 6.043938 GGTCCCCACCTGAATATATTACTCAA 59.956 42.308 0.00 0.00 40.00 3.02
358 359 5.546499 GGTCCCCACCTGAATATATTACTCA 59.454 44.000 0.00 0.00 40.00 3.41
359 360 5.045797 GGGTCCCCACCTGAATATATTACTC 60.046 48.000 0.00 0.00 43.22 2.59
360 361 4.850386 GGGTCCCCACCTGAATATATTACT 59.150 45.833 0.00 0.00 43.22 2.24
361 362 4.018688 GGGGTCCCCACCTGAATATATTAC 60.019 50.000 23.53 0.00 44.65 1.89
362 363 4.180723 GGGGTCCCCACCTGAATATATTA 58.819 47.826 23.53 0.00 44.65 0.98
363 364 2.993863 GGGGTCCCCACCTGAATATATT 59.006 50.000 23.53 0.00 44.65 1.28
364 365 2.644151 GGGGTCCCCACCTGAATATAT 58.356 52.381 23.53 0.00 44.65 0.86
365 366 2.127651 GGGGTCCCCACCTGAATATA 57.872 55.000 23.53 0.00 44.65 0.86
366 367 2.960710 GGGGTCCCCACCTGAATAT 58.039 57.895 23.53 0.00 44.65 1.28
367 368 4.512053 GGGGTCCCCACCTGAATA 57.488 61.111 23.53 0.00 44.65 1.75
427 428 8.977505 CGGATTCAAATTAATTGTCACAACTTT 58.022 29.630 0.39 0.00 40.11 2.66
428 429 8.356657 TCGGATTCAAATTAATTGTCACAACTT 58.643 29.630 0.39 0.00 40.11 2.66
429 430 7.881142 TCGGATTCAAATTAATTGTCACAACT 58.119 30.769 0.39 0.00 40.11 3.16
430 431 7.273381 CCTCGGATTCAAATTAATTGTCACAAC 59.727 37.037 0.39 0.00 40.11 3.32
431 432 7.312154 CCTCGGATTCAAATTAATTGTCACAA 58.688 34.615 0.39 0.00 40.11 3.33
432 433 6.127758 CCCTCGGATTCAAATTAATTGTCACA 60.128 38.462 0.39 0.00 40.11 3.58
433 434 6.094881 TCCCTCGGATTCAAATTAATTGTCAC 59.905 38.462 0.39 0.00 40.11 3.67
434 435 6.184068 TCCCTCGGATTCAAATTAATTGTCA 58.816 36.000 0.39 0.00 40.11 3.58
435 436 6.318900 ACTCCCTCGGATTCAAATTAATTGTC 59.681 38.462 0.39 0.00 40.11 3.18
436 437 6.187682 ACTCCCTCGGATTCAAATTAATTGT 58.812 36.000 0.39 0.00 40.11 2.71
437 438 6.699575 ACTCCCTCGGATTCAAATTAATTG 57.300 37.500 0.39 0.00 40.58 2.32
438 439 6.771267 GGTACTCCCTCGGATTCAAATTAATT 59.229 38.462 0.00 0.00 0.00 1.40
439 440 6.126594 TGGTACTCCCTCGGATTCAAATTAAT 60.127 38.462 0.00 0.00 0.00 1.40
440 441 5.190132 TGGTACTCCCTCGGATTCAAATTAA 59.810 40.000 0.00 0.00 0.00 1.40
441 442 4.717778 TGGTACTCCCTCGGATTCAAATTA 59.282 41.667 0.00 0.00 0.00 1.40
442 443 3.521937 TGGTACTCCCTCGGATTCAAATT 59.478 43.478 0.00 0.00 0.00 1.82
443 444 3.112263 TGGTACTCCCTCGGATTCAAAT 58.888 45.455 0.00 0.00 0.00 2.32
444 445 2.235402 GTGGTACTCCCTCGGATTCAAA 59.765 50.000 0.00 0.00 0.00 2.69
445 446 1.829222 GTGGTACTCCCTCGGATTCAA 59.171 52.381 0.00 0.00 0.00 2.69
446 447 1.006758 AGTGGTACTCCCTCGGATTCA 59.993 52.381 0.00 0.00 0.00 2.57
447 448 1.777941 AGTGGTACTCCCTCGGATTC 58.222 55.000 0.00 0.00 0.00 2.52
448 449 2.249309 AAGTGGTACTCCCTCGGATT 57.751 50.000 0.00 0.00 0.00 3.01
449 450 2.249309 AAAGTGGTACTCCCTCGGAT 57.751 50.000 0.00 0.00 0.00 4.18
450 451 2.042162 AGTAAAGTGGTACTCCCTCGGA 59.958 50.000 0.00 0.00 27.56 4.55
451 452 2.454538 AGTAAAGTGGTACTCCCTCGG 58.545 52.381 0.00 0.00 27.56 4.63
452 453 3.846360 CAAGTAAAGTGGTACTCCCTCG 58.154 50.000 0.00 0.00 33.05 4.63
453 454 3.007614 TGCAAGTAAAGTGGTACTCCCTC 59.992 47.826 0.00 0.00 33.05 4.30
454 455 2.976882 TGCAAGTAAAGTGGTACTCCCT 59.023 45.455 0.00 0.00 33.05 4.20
455 456 3.412237 TGCAAGTAAAGTGGTACTCCC 57.588 47.619 0.00 0.00 33.05 4.30
456 457 5.761165 TTTTGCAAGTAAAGTGGTACTCC 57.239 39.130 0.00 0.00 33.05 3.85
457 458 9.738832 TTTATTTTTGCAAGTAAAGTGGTACTC 57.261 29.630 0.00 0.00 33.05 2.59
458 459 9.744468 CTTTATTTTTGCAAGTAAAGTGGTACT 57.256 29.630 21.08 2.72 37.39 2.73
459 460 9.524106 ACTTTATTTTTGCAAGTAAAGTGGTAC 57.476 29.630 27.59 0.00 46.11 3.34
471 472 7.169982 CCGTGGATGTAAACTTTATTTTTGCAA 59.830 33.333 0.00 0.00 33.15 4.08
472 473 6.642950 CCGTGGATGTAAACTTTATTTTTGCA 59.357 34.615 0.00 0.00 33.81 4.08
505 508 4.021981 AGGAAGCAGGCATGTAAACTTTTC 60.022 41.667 0.00 0.00 0.00 2.29
561 566 3.875125 AGCACTAGAGAGACACGTATCA 58.125 45.455 0.00 0.00 0.00 2.15
612 617 2.097056 CAGCGCTATGTGATGTGATTCG 60.097 50.000 10.99 0.00 0.00 3.34
843 875 2.021457 GGCACAATTTATAGGCCGTGT 58.979 47.619 0.00 0.00 34.56 4.49
969 1035 2.654877 GCGGACGGAAGGACAGAA 59.345 61.111 0.00 0.00 0.00 3.02
980 1054 2.813474 TTCAATCAGCCGCGGACG 60.813 61.111 33.48 19.38 39.67 4.79
981 1055 1.573829 TTGTTCAATCAGCCGCGGAC 61.574 55.000 33.48 20.78 0.00 4.79
982 1056 0.676466 ATTGTTCAATCAGCCGCGGA 60.676 50.000 33.48 8.89 0.00 5.54
997 1085 1.308069 GCCATCACAGTCGCCATTGT 61.308 55.000 0.00 0.00 0.00 2.71
1146 1240 1.594021 CTTGGGTTTGTTTGGCGGC 60.594 57.895 0.00 0.00 0.00 6.53
1172 1366 1.732259 CATGCTTTGGGACTACGTGTC 59.268 52.381 0.00 3.83 44.63 3.67
1173 1367 1.808411 CATGCTTTGGGACTACGTGT 58.192 50.000 0.00 0.00 0.00 4.49
1174 1368 0.447801 GCATGCTTTGGGACTACGTG 59.552 55.000 11.37 0.00 0.00 4.49
1175 1369 0.676782 GGCATGCTTTGGGACTACGT 60.677 55.000 18.92 0.00 0.00 3.57
1176 1370 0.676466 TGGCATGCTTTGGGACTACG 60.676 55.000 18.92 0.00 0.00 3.51
1177 1371 1.406539 CATGGCATGCTTTGGGACTAC 59.593 52.381 18.92 0.00 0.00 2.73
1178 1372 1.005805 ACATGGCATGCTTTGGGACTA 59.994 47.619 26.70 0.00 0.00 2.59
1179 1373 0.251922 ACATGGCATGCTTTGGGACT 60.252 50.000 26.70 1.30 0.00 3.85
1180 1374 1.473258 TACATGGCATGCTTTGGGAC 58.527 50.000 26.70 0.00 0.00 4.46
1213 1415 0.663688 AGTCTAGCTACGTCGCCATG 59.336 55.000 8.64 0.00 0.00 3.66
1214 1416 1.390565 AAGTCTAGCTACGTCGCCAT 58.609 50.000 8.64 0.00 0.00 4.40
1215 1417 1.938577 CTAAGTCTAGCTACGTCGCCA 59.061 52.381 8.64 0.00 0.00 5.69
1217 1419 2.021443 GCTAAGTCTAGCTACGTCGC 57.979 55.000 3.45 3.45 46.12 5.19
1233 1436 2.536066 TCAGAAACCTGCCACTAGCTA 58.464 47.619 0.00 0.00 44.23 3.32
1237 1440 4.640201 GCAAATATCAGAAACCTGCCACTA 59.360 41.667 0.00 0.00 0.00 2.74
1274 1481 1.903877 CGTCCCAGATGGAGGTGCTT 61.904 60.000 0.00 0.00 46.38 3.91
1535 1742 3.764466 CGGCCGTTCCAGAGCTCT 61.764 66.667 19.50 11.45 34.01 4.09
1627 1834 1.796796 GGTCGGCAACAGATTCAGC 59.203 57.895 0.00 0.00 0.00 4.26
1634 1850 0.390603 TGTTATCCGGTCGGCAACAG 60.391 55.000 18.53 0.00 36.06 3.16
1640 1856 1.153509 GGGTGTGTTATCCGGTCGG 60.154 63.158 0.00 2.52 0.00 4.79
1656 1872 2.362717 GTCCTACTAGCTAAGCACAGGG 59.637 54.545 0.00 0.00 0.00 4.45
1662 2067 2.563620 GGGGATGTCCTACTAGCTAAGC 59.436 54.545 0.00 0.00 35.95 3.09
1680 2088 6.305411 ACTAGCTAAGTACATGTAGTAGGGG 58.695 44.000 13.58 5.88 36.36 4.79
1681 2089 8.156165 ACTACTAGCTAAGTACATGTAGTAGGG 58.844 40.741 22.74 14.01 41.97 3.53
1685 2093 8.932610 TCCTACTACTAGCTAAGTACATGTAGT 58.067 37.037 18.27 18.27 41.02 2.73
1687 2095 8.708378 TGTCCTACTACTAGCTAAGTACATGTA 58.292 37.037 0.08 0.08 39.80 2.29
1688 2096 7.571919 TGTCCTACTACTAGCTAAGTACATGT 58.428 38.462 2.69 2.69 39.80 3.21
1690 2098 8.219178 ACATGTCCTACTACTAGCTAAGTACAT 58.781 37.037 0.00 4.55 39.80 2.29
1692 2100 9.553064 TTACATGTCCTACTACTAGCTAAGTAC 57.447 37.037 0.00 0.00 39.80 2.73
1694 2102 9.643735 ATTTACATGTCCTACTACTAGCTAAGT 57.356 33.333 0.00 3.65 42.62 2.24
1695 2103 9.900710 CATTTACATGTCCTACTACTAGCTAAG 57.099 37.037 0.00 0.00 0.00 2.18
1702 2110 8.589338 GGATGATCATTTACATGTCCTACTACT 58.411 37.037 10.14 0.00 0.00 2.57
1705 2113 7.524532 CGAGGATGATCATTTACATGTCCTACT 60.525 40.741 10.14 0.00 34.01 2.57
1706 2114 6.587990 CGAGGATGATCATTTACATGTCCTAC 59.412 42.308 10.14 3.99 34.01 3.18
1708 2116 5.070981 ACGAGGATGATCATTTACATGTCCT 59.929 40.000 10.14 9.76 35.71 3.85
1709 2117 5.300752 ACGAGGATGATCATTTACATGTCC 58.699 41.667 10.14 4.60 0.00 4.02
1710 2118 8.539770 AATACGAGGATGATCATTTACATGTC 57.460 34.615 10.14 0.00 0.00 3.06
1711 2119 8.370940 AGAATACGAGGATGATCATTTACATGT 58.629 33.333 10.14 2.69 0.00 3.21
1712 2120 8.768957 AGAATACGAGGATGATCATTTACATG 57.231 34.615 10.14 0.00 0.00 3.21
1713 2121 9.784531 AAAGAATACGAGGATGATCATTTACAT 57.215 29.630 10.14 0.00 0.00 2.29
1714 2122 9.045223 CAAAGAATACGAGGATGATCATTTACA 57.955 33.333 10.14 0.00 0.00 2.41
1715 2123 9.046296 ACAAAGAATACGAGGATGATCATTTAC 57.954 33.333 10.14 3.88 0.00 2.01
1717 2125 9.265901 CTACAAAGAATACGAGGATGATCATTT 57.734 33.333 10.14 1.27 0.00 2.32
1718 2126 7.386299 GCTACAAAGAATACGAGGATGATCATT 59.614 37.037 10.14 0.00 0.00 2.57
1767 2183 7.215719 TGAATACGAGTGAGAGAAAGAAAGA 57.784 36.000 0.00 0.00 0.00 2.52
1776 2192 3.553511 GCCACAATGAATACGAGTGAGAG 59.446 47.826 0.00 0.00 32.14 3.20
1791 2207 7.557358 TCATAGTACTGAATTGAATGCCACAAT 59.443 33.333 5.39 0.00 39.25 2.71
1869 2988 0.400213 TGCTTGAACCAGGTACCAGG 59.600 55.000 21.26 21.26 0.00 4.45
1876 2996 1.294659 GCGAGTCTGCTTGAACCAGG 61.295 60.000 0.00 0.00 0.00 4.45
2029 3897 5.526846 CCTCATCTATTCCACTTTCTTCTGC 59.473 44.000 0.00 0.00 0.00 4.26
2037 3907 8.772250 TCACTATTTTCCTCATCTATTCCACTT 58.228 33.333 0.00 0.00 0.00 3.16
2047 3917 3.117888 TGGGCCTCACTATTTTCCTCATC 60.118 47.826 4.53 0.00 0.00 2.92
2100 4531 2.538141 CCCACTTTCCTCCTGGCCA 61.538 63.158 4.71 4.71 0.00 5.36
2260 6509 7.092623 TGAGATAACAGGGGAGCTAAAAATGTA 60.093 37.037 0.00 0.00 0.00 2.29
2261 6510 6.079712 AGATAACAGGGGAGCTAAAAATGT 57.920 37.500 0.00 0.00 0.00 2.71
2485 8891 4.340097 TGGAGATGCACAATGAATCCAATC 59.660 41.667 0.00 0.00 32.62 2.67
2531 9502 5.743398 CCGGTTGCATACATTAATTGTTGAG 59.257 40.000 0.00 0.00 39.87 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.