Multiple sequence alignment - TraesCS7B01G120700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G120700 chr7B 100.000 4984 0 0 1 4984 140926350 140931333 0.000000e+00 9204.0
1 TraesCS7B01G120700 chr7A 93.125 2851 126 21 597 3417 177323202 177326012 0.000000e+00 4115.0
2 TraesCS7B01G120700 chr7A 90.259 1581 94 22 3450 4978 177326008 177327580 0.000000e+00 2012.0
3 TraesCS7B01G120700 chr7A 90.578 329 23 3 1 328 177321907 177322228 3.560000e-116 429.0
4 TraesCS7B01G120700 chr7A 92.527 281 18 2 319 597 177322649 177322928 2.800000e-107 399.0
5 TraesCS7B01G120700 chr7A 100.000 36 0 0 46 81 177320243 177320278 3.220000e-07 67.6
6 TraesCS7B01G120700 chr7D 91.461 2717 149 30 2325 4984 175643170 175645860 0.000000e+00 3655.0
7 TraesCS7B01G120700 chr7D 92.727 2365 92 22 1 2325 175640457 175642781 0.000000e+00 3341.0
8 TraesCS7B01G120700 chr7D 84.507 142 15 6 455 591 34757005 34756866 3.130000e-27 134.0
9 TraesCS7B01G120700 chr3B 77.945 399 68 13 1633 2017 640692001 640692393 1.080000e-56 231.0
10 TraesCS7B01G120700 chr4A 87.407 135 9 6 464 592 722322174 722322306 1.120000e-31 148.0
11 TraesCS7B01G120700 chr5D 87.121 132 10 6 464 592 535006240 535006367 5.200000e-30 143.0
12 TraesCS7B01G120700 chr1A 76.433 314 41 15 1415 1697 6707714 6708025 6.730000e-29 139.0
13 TraesCS7B01G120700 chr1A 85.185 135 17 2 464 595 155857729 155857863 8.700000e-28 135.0
14 TraesCS7B01G120700 chr1A 88.608 79 9 0 4703 4781 456939726 456939804 4.110000e-16 97.1
15 TraesCS7B01G120700 chr2A 85.714 133 13 5 464 592 141506447 141506317 8.700000e-28 135.0
16 TraesCS7B01G120700 chr4D 84.783 138 15 6 464 598 296729523 296729389 3.130000e-27 134.0
17 TraesCS7B01G120700 chr3D 85.385 130 17 2 464 591 447571967 447571838 3.130000e-27 134.0
18 TraesCS7B01G120700 chr1B 89.610 77 8 0 4712 4788 478720833 478720909 1.140000e-16 99.0
19 TraesCS7B01G120700 chr2B 83.529 85 13 1 4700 4783 32632008 32631924 1.490000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G120700 chr7B 140926350 140931333 4983 False 9204.00 9204 100.0000 1 4984 1 chr7B.!!$F1 4983
1 TraesCS7B01G120700 chr7A 177320243 177327580 7337 False 1404.52 4115 93.2978 1 4978 5 chr7A.!!$F1 4977
2 TraesCS7B01G120700 chr7D 175640457 175645860 5403 False 3498.00 3655 92.0940 1 4984 2 chr7D.!!$F1 4983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 3320 0.039035 TCCCGTTCCCAAATTCCCAG 59.961 55.0 0.0 0.0 0.00 4.45 F
1912 4330 0.038159 AAGAGGACGCTTTGAGGTCG 60.038 55.0 0.0 0.0 33.99 4.79 F
2682 5492 0.621082 TGTTCACCACTTCACCACCA 59.379 50.0 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2871 5683 0.037590 AACTTTGGGACCGCATAGCA 59.962 50.0 4.88 0.0 0.0 3.49 R
2912 5724 0.675633 GGCCACAGTTCAGTTTGCAT 59.324 50.0 0.00 0.0 0.0 3.96 R
4488 7314 0.318441 CGTCTTCACAAGCTCCTCCA 59.682 55.0 0.00 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 1723 0.259065 TCTGGTGGAGAGCGTATCCT 59.741 55.000 6.48 0.00 37.74 3.24
123 1789 6.548622 TCAGGTAGCTACACTTAATATTCGGT 59.451 38.462 24.75 0.00 0.00 4.69
145 1811 1.264749 ACGCCTTGATCAGGTAGCCA 61.265 55.000 3.93 0.00 46.07 4.75
202 1868 7.067496 TCATTTCCACTACTTCATCTATCCC 57.933 40.000 0.00 0.00 0.00 3.85
223 1889 5.991606 TCCCGATTTATAAGTCTCAAGCATG 59.008 40.000 6.44 0.00 0.00 4.06
227 1893 7.852945 CCGATTTATAAGTCTCAAGCATGTTTC 59.147 37.037 6.44 0.00 0.00 2.78
320 1986 7.840489 TGAAATCTTTTCTTGAAATTGAACGC 58.160 30.769 0.00 0.00 0.00 4.84
534 2632 5.809562 GTGTTTGTTCACACATTTCAATCCA 59.190 36.000 0.00 0.00 45.57 3.41
536 2634 6.700960 TGTTTGTTCACACATTTCAATCCATC 59.299 34.615 0.00 0.00 31.06 3.51
592 2690 9.125906 CTTATATTTATGAACGGAGGAAGTACG 57.874 37.037 0.00 0.00 0.00 3.67
602 2700 6.951256 ACGGAGGAAGTACGTTATTAAAAC 57.049 37.500 0.00 0.00 37.61 2.43
603 2701 6.454795 ACGGAGGAAGTACGTTATTAAAACA 58.545 36.000 0.00 0.00 37.61 2.83
604 2702 6.366061 ACGGAGGAAGTACGTTATTAAAACAC 59.634 38.462 0.00 0.00 37.61 3.32
674 3056 1.270550 CCATCTGGTTTCCACTTGCAC 59.729 52.381 0.00 0.00 0.00 4.57
675 3057 1.955778 CATCTGGTTTCCACTTGCACA 59.044 47.619 0.00 0.00 0.00 4.57
687 3069 1.267365 CTTGCACAAACCACACAACG 58.733 50.000 0.00 0.00 0.00 4.10
727 3109 2.766660 GCCTCTTTTGGCCCCTCT 59.233 61.111 0.00 0.00 46.82 3.69
730 3112 1.260544 CCTCTTTTGGCCCCTCTTTG 58.739 55.000 0.00 0.00 0.00 2.77
803 3186 3.861263 GCCTCGTAAAAGCGGCCG 61.861 66.667 24.05 24.05 36.08 6.13
932 3320 0.039035 TCCCGTTCCCAAATTCCCAG 59.961 55.000 0.00 0.00 0.00 4.45
988 3376 2.554893 CCTCCCGATTCGGTTTGAAAAA 59.445 45.455 22.83 0.00 46.80 1.94
1228 3629 3.125316 GCTTGTAGATTCGGGTTGTTCTG 59.875 47.826 0.00 0.00 0.00 3.02
1522 3924 5.649831 GTGCAAGAAAGTTCAGATTAGGGAT 59.350 40.000 0.00 0.00 0.00 3.85
1623 4037 7.426410 TGGCGTTGATAAATCTGTTTTGTTAA 58.574 30.769 0.00 0.00 0.00 2.01
1700 4118 4.445385 GTGATTTGAAAAGCGCAAAGACAT 59.555 37.500 11.47 0.00 38.48 3.06
1708 4126 1.949525 AGCGCAAAGACATCACAAACT 59.050 42.857 11.47 0.00 0.00 2.66
1722 4140 3.186119 CACAAACTGTGTCGGCAAAAAT 58.814 40.909 0.00 0.00 43.08 1.82
1756 4174 5.413309 CTGGAGACACAGGAAATAAGAGT 57.587 43.478 0.00 0.00 34.84 3.24
1777 4195 5.491982 AGTACACCTGATTCAAATGGAGAC 58.508 41.667 0.00 0.00 0.00 3.36
1806 4224 1.463674 GTTGCCCCGATGACTCAATT 58.536 50.000 0.00 0.00 0.00 2.32
1810 4228 3.100545 CCCGATGACTCAATTGGGG 57.899 57.895 10.75 4.78 44.84 4.96
1843 4261 4.227864 ACCCAAAGACAAGGATGAGATC 57.772 45.455 0.00 0.00 0.00 2.75
1846 4264 3.369892 CCAAAGACAAGGATGAGATCGGT 60.370 47.826 0.00 0.00 0.00 4.69
1900 4318 3.312697 AGCAACTTGTCGAAAAAGAGGAC 59.687 43.478 14.33 3.34 0.00 3.85
1912 4330 0.038159 AAGAGGACGCTTTGAGGTCG 60.038 55.000 0.00 0.00 33.99 4.79
1915 4333 2.048127 GACGCTTTGAGGTCGGCT 60.048 61.111 0.00 0.00 0.00 5.52
1945 4363 2.495669 TGTGAGTGAGATGAATGCGGTA 59.504 45.455 0.00 0.00 0.00 4.02
1981 4399 0.874175 GGTTGAAACGCCAAGTTGCC 60.874 55.000 0.00 0.00 43.37 4.52
1996 4414 3.740115 AGTTGCCGAGAAAGAAGCTTTA 58.260 40.909 0.00 0.00 0.00 1.85
2008 4426 8.340618 AGAAAGAAGCTTTAATCAAGTATGCA 57.659 30.769 0.00 0.00 34.56 3.96
2049 4467 4.133796 GGTGAATTGCCCGCCTGC 62.134 66.667 0.00 0.00 0.00 4.85
2050 4468 4.133796 GTGAATTGCCCGCCTGCC 62.134 66.667 0.00 0.00 0.00 4.85
2051 4469 4.365111 TGAATTGCCCGCCTGCCT 62.365 61.111 0.00 0.00 0.00 4.75
2052 4470 3.830192 GAATTGCCCGCCTGCCTG 61.830 66.667 0.00 0.00 0.00 4.85
2074 4492 3.876914 GCCTGCAACTACATTGTGCTATA 59.123 43.478 0.00 0.00 40.77 1.31
2075 4493 4.335315 GCCTGCAACTACATTGTGCTATAA 59.665 41.667 0.00 0.00 40.77 0.98
2115 4533 8.850156 GTGGAAATTGTGCTATATTATGGTTCT 58.150 33.333 0.00 0.00 0.00 3.01
2124 4542 5.997746 GCTATATTATGGTTCTGTGAGCCAA 59.002 40.000 7.19 0.00 45.38 4.52
2134 4552 2.172505 TCTGTGAGCCAAAGTTTCCTCA 59.827 45.455 10.11 10.11 32.35 3.86
2137 4556 3.960102 TGTGAGCCAAAGTTTCCTCATTT 59.040 39.130 15.02 0.00 36.78 2.32
2148 4567 6.324561 AGTTTCCTCATTTTTCTGAAGCTC 57.675 37.500 0.00 0.00 0.00 4.09
2154 4573 5.347907 CCTCATTTTTCTGAAGCTCATTTGC 59.652 40.000 0.00 0.00 0.00 3.68
2208 4627 4.143179 GGCACACTAGTTGCTACGTTTTAG 60.143 45.833 21.39 0.00 0.00 1.85
2213 4632 8.280497 CACACTAGTTGCTACGTTTTAGATTTT 58.720 33.333 0.00 0.00 0.00 1.82
2214 4633 8.833493 ACACTAGTTGCTACGTTTTAGATTTTT 58.167 29.630 0.00 0.00 0.00 1.94
2215 4634 9.103048 CACTAGTTGCTACGTTTTAGATTTTTG 57.897 33.333 0.00 0.00 0.00 2.44
2216 4635 8.287503 ACTAGTTGCTACGTTTTAGATTTTTGG 58.712 33.333 0.00 0.00 0.00 3.28
2217 4636 7.034685 AGTTGCTACGTTTTAGATTTTTGGT 57.965 32.000 0.00 0.00 0.00 3.67
2218 4637 7.485810 AGTTGCTACGTTTTAGATTTTTGGTT 58.514 30.769 0.00 0.00 0.00 3.67
2219 4638 7.434013 AGTTGCTACGTTTTAGATTTTTGGTTG 59.566 33.333 0.00 0.00 0.00 3.77
2220 4639 6.797454 TGCTACGTTTTAGATTTTTGGTTGT 58.203 32.000 0.00 0.00 0.00 3.32
2221 4640 6.913673 TGCTACGTTTTAGATTTTTGGTTGTC 59.086 34.615 0.00 0.00 0.00 3.18
2222 4641 6.913673 GCTACGTTTTAGATTTTTGGTTGTCA 59.086 34.615 0.00 0.00 0.00 3.58
2223 4642 7.096763 GCTACGTTTTAGATTTTTGGTTGTCAC 60.097 37.037 0.00 0.00 0.00 3.67
2224 4643 5.740099 ACGTTTTAGATTTTTGGTTGTCACG 59.260 36.000 0.00 0.00 0.00 4.35
2225 4644 5.331235 CGTTTTAGATTTTTGGTTGTCACGC 60.331 40.000 0.00 0.00 0.00 5.34
2226 4645 2.793278 AGATTTTTGGTTGTCACGCC 57.207 45.000 0.00 0.00 0.00 5.68
2227 4646 1.339929 AGATTTTTGGTTGTCACGCCC 59.660 47.619 0.00 0.00 0.00 6.13
2379 5189 7.004086 TCCAGAATTATACAAAGGCCATAAGG 58.996 38.462 5.01 0.00 38.23 2.69
2410 5220 7.815068 AGAAAAGTGACACTACATGACTATCAC 59.185 37.037 8.91 6.73 36.16 3.06
2412 5222 6.201226 AGTGACACTACATGACTATCACTG 57.799 41.667 6.24 0.00 42.70 3.66
2417 5227 5.046529 CACTACATGACTATCACTGAAGCC 58.953 45.833 0.00 0.00 0.00 4.35
2469 5279 6.294731 GCACCCTCAGTTTCAAAATATTGAGT 60.295 38.462 0.00 0.00 45.82 3.41
2492 5302 3.129462 TGAGATTGAAGTAGTCTCAGGCG 59.871 47.826 0.51 0.00 44.36 5.52
2533 5343 4.833478 ATCCTGTCAAAGTAGCATCTGT 57.167 40.909 0.00 0.00 0.00 3.41
2571 5381 1.422531 TCCAAGCAGCCAAAATGGTT 58.577 45.000 0.00 0.00 40.46 3.67
2585 5395 9.183368 AGCCAAAATGGTTATTTCTTTGAAAAA 57.817 25.926 0.00 0.00 40.46 1.94
2624 5434 7.765695 TCCTAGAAGCTTCATCAAACATTTT 57.234 32.000 27.57 5.51 0.00 1.82
2673 5483 6.488006 GGAATGATATGCTTATGTTCACCACT 59.512 38.462 0.00 0.00 0.00 4.00
2674 5484 7.013655 GGAATGATATGCTTATGTTCACCACTT 59.986 37.037 0.00 0.00 0.00 3.16
2675 5485 6.925610 TGATATGCTTATGTTCACCACTTC 57.074 37.500 0.00 0.00 0.00 3.01
2676 5486 6.413892 TGATATGCTTATGTTCACCACTTCA 58.586 36.000 0.00 0.00 0.00 3.02
2677 5487 6.316140 TGATATGCTTATGTTCACCACTTCAC 59.684 38.462 0.00 0.00 0.00 3.18
2678 5488 3.146066 TGCTTATGTTCACCACTTCACC 58.854 45.455 0.00 0.00 0.00 4.02
2679 5489 3.146066 GCTTATGTTCACCACTTCACCA 58.854 45.455 0.00 0.00 0.00 4.17
2680 5490 3.058224 GCTTATGTTCACCACTTCACCAC 60.058 47.826 0.00 0.00 0.00 4.16
2681 5491 1.981256 ATGTTCACCACTTCACCACC 58.019 50.000 0.00 0.00 0.00 4.61
2682 5492 0.621082 TGTTCACCACTTCACCACCA 59.379 50.000 0.00 0.00 0.00 4.17
2683 5493 1.214175 TGTTCACCACTTCACCACCAT 59.786 47.619 0.00 0.00 0.00 3.55
2684 5494 2.306847 GTTCACCACTTCACCACCATT 58.693 47.619 0.00 0.00 0.00 3.16
2685 5495 2.693074 GTTCACCACTTCACCACCATTT 59.307 45.455 0.00 0.00 0.00 2.32
2686 5496 3.025322 TCACCACTTCACCACCATTTT 57.975 42.857 0.00 0.00 0.00 1.82
2700 5510 4.326817 CCACCATTTTGTTCACAATATGCG 59.673 41.667 14.34 11.17 41.10 4.73
2725 5535 8.743099 CGAAGTTGATTTTAAACTGAAGAAACC 58.257 33.333 0.00 0.00 37.90 3.27
2732 5542 9.459640 GATTTTAAACTGAAGAAACCAAGGTAC 57.540 33.333 0.00 0.00 0.00 3.34
2733 5543 6.607735 TTAAACTGAAGAAACCAAGGTACG 57.392 37.500 0.00 0.00 0.00 3.67
2734 5544 4.411256 AACTGAAGAAACCAAGGTACGA 57.589 40.909 0.00 0.00 0.00 3.43
2735 5545 4.411256 ACTGAAGAAACCAAGGTACGAA 57.589 40.909 0.00 0.00 0.00 3.85
2736 5546 4.969484 ACTGAAGAAACCAAGGTACGAAT 58.031 39.130 0.00 0.00 0.00 3.34
2737 5547 6.105397 ACTGAAGAAACCAAGGTACGAATA 57.895 37.500 0.00 0.00 0.00 1.75
2738 5548 6.708285 ACTGAAGAAACCAAGGTACGAATAT 58.292 36.000 0.00 0.00 0.00 1.28
2854 5665 8.730680 GTGAATTTCAAATCTTTGTAGCCTAGA 58.269 33.333 0.00 0.00 39.18 2.43
2884 5696 1.893801 ACTACTATGCTATGCGGTCCC 59.106 52.381 0.00 0.00 0.00 4.46
2891 5703 1.279558 TGCTATGCGGTCCCAAAGTTA 59.720 47.619 0.00 0.00 0.00 2.24
2900 5712 4.386711 CGGTCCCAAAGTTATAATCCTCC 58.613 47.826 0.00 0.00 0.00 4.30
2912 5724 7.591821 AGTTATAATCCTCCTTTTGGCCATAA 58.408 34.615 6.09 7.51 40.12 1.90
2937 5749 0.258774 ACTGAACTGTGGCCCTGTTT 59.741 50.000 14.54 0.00 35.60 2.83
2987 5799 3.876320 ACGCAATTCCACTTTTTGCAATT 59.124 34.783 0.00 0.00 44.58 2.32
3092 5904 1.133792 AGTGGGTGTTCTGTTCCCTTG 60.134 52.381 0.00 0.00 41.58 3.61
3093 5905 0.467290 TGGGTGTTCTGTTCCCTTGC 60.467 55.000 0.00 0.00 41.58 4.01
3098 5910 2.034685 GTGTTCTGTTCCCTTGCTTTCC 59.965 50.000 0.00 0.00 0.00 3.13
3100 5912 2.276732 TCTGTTCCCTTGCTTTCCTG 57.723 50.000 0.00 0.00 0.00 3.86
3142 5954 4.012374 AGTCAAATCAACAGCCCATACTG 58.988 43.478 0.00 0.00 43.59 2.74
3283 6096 2.191400 TCTTCAAGGGGATGTCTCCAG 58.809 52.381 1.07 0.00 44.08 3.86
3425 6238 4.697352 GTGAGTAATCCTTGATTGCTGTGT 59.303 41.667 11.36 0.00 43.05 3.72
3492 6305 2.169144 AGGTCTGATCAATGATGACGCA 59.831 45.455 0.00 0.00 38.69 5.24
3493 6306 3.136763 GGTCTGATCAATGATGACGCAT 58.863 45.455 0.00 0.00 38.69 4.73
3494 6307 4.039609 AGGTCTGATCAATGATGACGCATA 59.960 41.667 0.00 0.00 38.69 3.14
3495 6308 4.151335 GGTCTGATCAATGATGACGCATAC 59.849 45.833 0.00 0.00 38.69 2.39
3510 6325 7.104043 TGACGCATACCTGTACTACTAATTT 57.896 36.000 0.00 0.00 0.00 1.82
3619 6442 9.941325 TGGCTTGAAAATCATGTAATGTTTAAT 57.059 25.926 0.00 0.00 46.80 1.40
3682 6505 7.499232 GCTATCAACATAATCAGGGTAACACTT 59.501 37.037 0.00 0.00 39.74 3.16
3683 6506 9.396022 CTATCAACATAATCAGGGTAACACTTT 57.604 33.333 0.00 0.00 39.74 2.66
3704 6527 9.825972 CACTTTTAGGATATGTTAATAATGCGG 57.174 33.333 0.00 0.00 0.00 5.69
3742 6565 3.626670 GCAAGATCACTATGAAAGCTGCT 59.373 43.478 0.00 0.00 0.00 4.24
3744 6567 5.277250 GCAAGATCACTATGAAAGCTGCTAC 60.277 44.000 0.90 0.85 0.00 3.58
3745 6568 5.604758 AGATCACTATGAAAGCTGCTACA 57.395 39.130 0.90 7.27 0.00 2.74
3746 6569 5.982356 AGATCACTATGAAAGCTGCTACAA 58.018 37.500 0.90 0.00 0.00 2.41
3800 6624 2.254546 TGCCTGCATATTTACCCTCG 57.745 50.000 0.00 0.00 0.00 4.63
4026 6850 2.100087 TGTATGTACGATGATGCACGGT 59.900 45.455 0.00 0.00 0.00 4.83
4206 7030 3.734463 TGTGCTCTCCGTTGTTGATTAA 58.266 40.909 0.00 0.00 0.00 1.40
4252 7076 3.084039 GTTTTGATGATGAGCACTGGGA 58.916 45.455 0.00 0.00 0.00 4.37
4300 7124 6.619801 AGTGTTTACAGACTTGGTTGAATC 57.380 37.500 0.00 0.00 0.00 2.52
4311 7135 1.144708 TGGTTGAATCTCCAGGCACAA 59.855 47.619 0.00 0.00 0.00 3.33
4331 7155 7.052565 CACAAATTGCTGCTAGTTTTTATGG 57.947 36.000 0.00 0.00 0.00 2.74
4332 7156 5.639082 ACAAATTGCTGCTAGTTTTTATGGC 59.361 36.000 0.00 0.00 0.00 4.40
4350 7175 4.686191 TGGCATTGGAATTTTGAACTGT 57.314 36.364 0.00 0.00 0.00 3.55
4358 7183 5.049167 TGGAATTTTGAACTGTTGATGCAC 58.951 37.500 0.00 0.00 0.00 4.57
4362 7187 4.734398 TTTGAACTGTTGATGCACCTTT 57.266 36.364 0.00 0.00 0.00 3.11
4363 7188 3.988379 TGAACTGTTGATGCACCTTTC 57.012 42.857 0.00 0.00 0.00 2.62
4367 7192 5.105392 TGAACTGTTGATGCACCTTTCTTTT 60.105 36.000 0.00 0.00 0.00 2.27
4368 7193 5.343307 ACTGTTGATGCACCTTTCTTTTT 57.657 34.783 0.00 0.00 0.00 1.94
4369 7194 6.463995 ACTGTTGATGCACCTTTCTTTTTA 57.536 33.333 0.00 0.00 0.00 1.52
4371 7196 7.500141 ACTGTTGATGCACCTTTCTTTTTATT 58.500 30.769 0.00 0.00 0.00 1.40
4372 7197 8.637986 ACTGTTGATGCACCTTTCTTTTTATTA 58.362 29.630 0.00 0.00 0.00 0.98
4373 7198 9.643693 CTGTTGATGCACCTTTCTTTTTATTAT 57.356 29.630 0.00 0.00 0.00 1.28
4374 7199 9.421806 TGTTGATGCACCTTTCTTTTTATTATG 57.578 29.630 0.00 0.00 0.00 1.90
4403 7228 5.878332 TTGTCATATTTCTGCAATCACGT 57.122 34.783 0.00 0.00 0.00 4.49
4405 7230 5.868257 TGTCATATTTCTGCAATCACGTTC 58.132 37.500 0.00 0.00 0.00 3.95
4406 7231 5.411053 TGTCATATTTCTGCAATCACGTTCA 59.589 36.000 0.00 0.00 0.00 3.18
4407 7232 6.093909 TGTCATATTTCTGCAATCACGTTCAT 59.906 34.615 0.00 0.00 0.00 2.57
4408 7233 6.412943 GTCATATTTCTGCAATCACGTTCATG 59.587 38.462 0.00 0.00 0.00 3.07
4409 7234 6.315891 TCATATTTCTGCAATCACGTTCATGA 59.684 34.615 0.00 0.00 0.00 3.07
4422 7248 3.557185 ACGTTCATGATGATGTGGAATCG 59.443 43.478 0.00 0.00 0.00 3.34
4423 7249 3.557185 CGTTCATGATGATGTGGAATCGT 59.443 43.478 0.00 0.00 0.00 3.73
4445 7271 6.697455 TCGTATAATGTCATCTGAAGAACTGC 59.303 38.462 0.00 0.00 0.00 4.40
4448 7274 7.876936 ATAATGTCATCTGAAGAACTGCAAT 57.123 32.000 0.00 0.00 0.00 3.56
4449 7275 6.585695 AATGTCATCTGAAGAACTGCAATT 57.414 33.333 0.00 0.00 0.00 2.32
4455 7281 8.386606 GTCATCTGAAGAACTGCAATTAAGTAG 58.613 37.037 0.00 0.00 0.00 2.57
4495 7321 8.150296 ACAACAATAATTTCCTTTTTGGAGGAG 58.850 33.333 0.00 0.00 46.09 3.69
4504 7330 3.005155 CCTTTTTGGAGGAGCTTGTGAAG 59.995 47.826 0.00 0.00 39.25 3.02
4507 7333 0.318441 TGGAGGAGCTTGTGAAGACG 59.682 55.000 0.00 0.00 0.00 4.18
4508 7334 1.016653 GGAGGAGCTTGTGAAGACGC 61.017 60.000 0.00 0.00 0.00 5.19
4518 7344 0.030235 GTGAAGACGCCAAAACCACC 59.970 55.000 0.00 0.00 0.00 4.61
4528 7354 1.134965 CCAAAACCACCTGCAACGAAA 60.135 47.619 0.00 0.00 0.00 3.46
4532 7358 1.909700 ACCACCTGCAACGAAATCAT 58.090 45.000 0.00 0.00 0.00 2.45
4538 7364 5.327091 CACCTGCAACGAAATCATTAGAAG 58.673 41.667 0.00 0.00 0.00 2.85
4577 7426 4.844349 ATCCACACTGTAGGTTTATGCT 57.156 40.909 0.00 0.00 0.00 3.79
4615 7464 9.736414 ATGCTCTTAATGCTATATTCTCACAAT 57.264 29.630 2.95 0.00 0.00 2.71
4631 7480 2.283884 CACAATTGCCCAAACAAACGTC 59.716 45.455 5.05 0.00 32.27 4.34
4687 7547 4.154195 CAGCCAAAGTTTAGCGAGTACAAT 59.846 41.667 0.22 0.00 0.00 2.71
4704 7564 7.980099 CGAGTACAATTGTAAAGATACCTCCTT 59.020 37.037 19.63 0.00 31.52 3.36
4745 7605 2.781923 CCAATGGATGCGATGATACCA 58.218 47.619 0.00 0.00 35.09 3.25
4788 7648 7.872113 ATTGTGATTGAATAAAGGAGGAGAC 57.128 36.000 0.00 0.00 0.00 3.36
4854 7716 2.701951 ACAACTCGACTCCTTAAACCCA 59.298 45.455 0.00 0.00 0.00 4.51
4935 7797 6.453659 CGTTAAACCTTGCAAGTTTTGAGTTG 60.454 38.462 26.67 11.21 38.37 3.16
4979 7844 9.875675 TTTTTCATTCTGTTGTTTTTCTTGTTG 57.124 25.926 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 1723 1.300620 CGAGTGCCTCCGTTTCACA 60.301 57.895 0.00 0.00 33.44 3.58
202 1868 8.390354 TGAAACATGCTTGAGACTTATAAATCG 58.610 33.333 6.60 0.00 0.00 3.34
393 2489 0.317479 AGTCTAGAACACCGCACACC 59.683 55.000 0.00 0.00 0.00 4.16
446 2542 7.633789 AGAACATCTAAATGTGTAGGGACAAT 58.366 34.615 0.00 0.00 45.48 2.71
448 2544 6.620877 AGAACATCTAAATGTGTAGGGACA 57.379 37.500 0.00 0.00 45.48 4.02
575 2673 4.996788 ATAACGTACTTCCTCCGTTCAT 57.003 40.909 0.00 0.00 43.09 2.57
674 3056 3.641437 ATGATTCCGTTGTGTGGTTTG 57.359 42.857 0.00 0.00 0.00 2.93
675 3057 4.320935 GCTAATGATTCCGTTGTGTGGTTT 60.321 41.667 0.00 0.00 0.00 3.27
687 3069 2.223572 CCACGCTTTGGCTAATGATTCC 60.224 50.000 0.00 0.00 39.07 3.01
720 3102 1.984570 GGGAAAGGCAAAGAGGGGC 60.985 63.158 0.00 0.00 0.00 5.80
727 3109 0.758123 CCTGCTTTGGGAAAGGCAAA 59.242 50.000 0.00 0.00 38.93 3.68
803 3186 1.017701 GTGTTGATTCCGACCGACCC 61.018 60.000 0.00 0.00 0.00 4.46
856 3239 2.044650 GGTCGGGGTTTAAGGCCC 60.045 66.667 0.00 8.28 45.35 5.80
932 3320 3.287520 GGCGGAATGGAATCGGGC 61.288 66.667 0.00 0.00 37.88 6.13
988 3376 2.427506 GTCGAGCATCCCTTTTGTCTT 58.572 47.619 0.00 0.00 0.00 3.01
1228 3629 1.060698 GACAAAGCAACCGCGATAGTC 59.939 52.381 8.23 0.03 45.49 2.59
1623 4037 4.072131 ACCGTTACAAAAGCTCATGACAT 58.928 39.130 5.77 0.00 0.00 3.06
1708 4126 1.007964 CCGCATTTTTGCCGACACA 60.008 52.632 0.00 0.00 0.00 3.72
1753 4171 5.582665 GTCTCCATTTGAATCAGGTGTACTC 59.417 44.000 0.00 0.00 0.00 2.59
1756 4174 5.497464 TGTCTCCATTTGAATCAGGTGTA 57.503 39.130 0.00 0.00 0.00 2.90
1806 4224 1.150135 TGGGTTTATTTTCTGCCCCCA 59.850 47.619 0.00 0.00 38.57 4.96
1810 4228 5.208463 TGTCTTTGGGTTTATTTTCTGCC 57.792 39.130 0.00 0.00 0.00 4.85
1900 4318 2.048222 TCAGCCGACCTCAAAGCG 60.048 61.111 0.00 0.00 0.00 4.68
1912 4330 2.163412 CTCACTCACAGTACTCTCAGCC 59.837 54.545 0.00 0.00 0.00 4.85
1915 4333 4.911390 TCATCTCACTCACAGTACTCTCA 58.089 43.478 0.00 0.00 0.00 3.27
1945 4363 5.097742 TCAACCCATCAACTGTCGAATAT 57.902 39.130 0.00 0.00 0.00 1.28
1981 4399 7.637907 GCATACTTGATTAAAGCTTCTTTCTCG 59.362 37.037 0.00 0.00 39.76 4.04
1996 4414 9.013229 TGTAACTGAGAATTTGCATACTTGATT 57.987 29.630 0.00 0.00 0.00 2.57
2008 4426 7.986889 ACCTTTGCATTTTGTAACTGAGAATTT 59.013 29.630 0.00 0.00 0.00 1.82
2049 4467 1.200716 CACAATGTAGTTGCAGGCAGG 59.799 52.381 0.00 0.00 41.69 4.85
2050 4468 1.401931 GCACAATGTAGTTGCAGGCAG 60.402 52.381 0.00 0.00 41.69 4.85
2051 4469 0.597568 GCACAATGTAGTTGCAGGCA 59.402 50.000 0.00 0.00 41.69 4.75
2052 4470 0.883833 AGCACAATGTAGTTGCAGGC 59.116 50.000 0.00 0.00 41.69 4.85
2108 4526 2.664402 ACTTTGGCTCACAGAACCAT 57.336 45.000 0.00 0.00 32.39 3.55
2115 4533 2.727123 TGAGGAAACTTTGGCTCACA 57.273 45.000 0.00 0.00 44.43 3.58
2124 4542 6.322201 TGAGCTTCAGAAAAATGAGGAAACTT 59.678 34.615 0.00 0.00 44.43 2.66
2134 4552 4.240096 CGGCAAATGAGCTTCAGAAAAAT 58.760 39.130 0.00 0.00 34.17 1.82
2137 4556 2.229792 ACGGCAAATGAGCTTCAGAAA 58.770 42.857 0.00 0.00 34.17 2.52
2148 4567 9.035338 CAAAATTTAAAACGATAACGGCAAATG 57.965 29.630 0.00 0.00 44.46 2.32
2208 4627 1.339929 AGGGCGTGACAACCAAAAATC 59.660 47.619 0.00 0.00 0.00 2.17
2213 4632 1.826054 CCAAGGGCGTGACAACCAA 60.826 57.895 0.00 0.00 0.00 3.67
2214 4633 2.203280 CCAAGGGCGTGACAACCA 60.203 61.111 0.00 0.00 0.00 3.67
2215 4634 2.203294 ACCAAGGGCGTGACAACC 60.203 61.111 0.00 0.00 0.00 3.77
2216 4635 1.381165 AACACCAAGGGCGTGACAAC 61.381 55.000 0.00 0.00 35.17 3.32
2217 4636 1.077357 AACACCAAGGGCGTGACAA 60.077 52.632 0.00 0.00 35.17 3.18
2218 4637 1.525077 GAACACCAAGGGCGTGACA 60.525 57.895 0.00 0.00 35.17 3.58
2219 4638 1.098712 TTGAACACCAAGGGCGTGAC 61.099 55.000 0.00 0.00 35.17 3.67
2220 4639 0.394488 TTTGAACACCAAGGGCGTGA 60.394 50.000 0.00 0.00 35.94 4.35
2221 4640 0.673437 ATTTGAACACCAAGGGCGTG 59.327 50.000 0.00 0.00 35.94 5.34
2222 4641 0.958822 GATTTGAACACCAAGGGCGT 59.041 50.000 0.00 0.00 35.94 5.68
2223 4642 0.958091 TGATTTGAACACCAAGGGCG 59.042 50.000 0.00 0.00 35.94 6.13
2224 4643 1.686052 TGTGATTTGAACACCAAGGGC 59.314 47.619 0.00 0.00 37.45 5.19
2225 4644 4.039004 TCATTGTGATTTGAACACCAAGGG 59.961 41.667 0.00 0.00 37.45 3.95
2226 4645 5.199024 TCATTGTGATTTGAACACCAAGG 57.801 39.130 0.00 0.00 37.45 3.61
2227 4646 5.865552 GGATCATTGTGATTTGAACACCAAG 59.134 40.000 0.00 0.00 37.20 3.61
2335 5143 2.485814 GGACTTTGTTCCATGACTCTGC 59.514 50.000 0.00 0.00 35.49 4.26
2346 5156 7.755373 GCCTTTGTATAATTCTGGACTTTGTTC 59.245 37.037 0.00 0.00 0.00 3.18
2353 5163 7.040409 CCTTATGGCCTTTGTATAATTCTGGAC 60.040 40.741 3.32 0.00 0.00 4.02
2379 5189 7.439655 AGTCATGTAGTGTCACTTTTCTTTCTC 59.560 37.037 11.54 0.00 0.00 2.87
2410 5220 3.119919 GCTGAATTCTTGACTGGCTTCAG 60.120 47.826 7.05 5.36 41.43 3.02
2412 5222 3.080319 AGCTGAATTCTTGACTGGCTTC 58.920 45.455 7.05 0.00 0.00 3.86
2417 5227 7.877097 AGCCTAATATAGCTGAATTCTTGACTG 59.123 37.037 7.05 0.00 38.11 3.51
2469 5279 4.380973 CGCCTGAGACTACTTCAATCTCAA 60.381 45.833 4.84 0.00 46.17 3.02
2478 5288 0.251653 TGGACCGCCTGAGACTACTT 60.252 55.000 0.00 0.00 34.31 2.24
2492 5302 2.352805 CTGCCTCCTTGGTGGACC 59.647 66.667 11.53 0.00 40.56 4.46
2533 5343 7.833682 TGCTTGGAACATATGGAAGATTAGAAA 59.166 33.333 7.80 0.00 39.30 2.52
2585 5395 4.574674 TCTAGGAAATGACCACATGCTT 57.425 40.909 0.00 0.00 36.79 3.91
2595 5405 6.942005 TGTTTGATGAAGCTTCTAGGAAATGA 59.058 34.615 26.09 3.93 0.00 2.57
2598 5408 7.765695 AATGTTTGATGAAGCTTCTAGGAAA 57.234 32.000 26.09 15.96 0.00 3.13
2673 5483 4.808414 TTGTGAACAAAATGGTGGTGAA 57.192 36.364 0.00 0.00 32.11 3.18
2674 5484 6.453943 CATATTGTGAACAAAATGGTGGTGA 58.546 36.000 0.00 0.00 39.55 4.02
2675 5485 5.120519 GCATATTGTGAACAAAATGGTGGTG 59.879 40.000 0.00 0.00 39.55 4.17
2676 5486 5.237048 GCATATTGTGAACAAAATGGTGGT 58.763 37.500 0.00 0.00 39.55 4.16
2677 5487 4.326817 CGCATATTGTGAACAAAATGGTGG 59.673 41.667 0.00 0.00 39.55 4.61
2678 5488 5.159925 TCGCATATTGTGAACAAAATGGTG 58.840 37.500 0.00 1.98 39.55 4.17
2679 5489 5.384063 TCGCATATTGTGAACAAAATGGT 57.616 34.783 0.00 0.00 39.55 3.55
2680 5490 5.863397 ACTTCGCATATTGTGAACAAAATGG 59.137 36.000 0.00 0.00 41.40 3.16
2681 5491 6.932901 ACTTCGCATATTGTGAACAAAATG 57.067 33.333 0.00 0.00 41.40 2.32
2682 5492 7.144661 TCAACTTCGCATATTGTGAACAAAAT 58.855 30.769 0.00 0.00 41.40 1.82
2683 5493 6.499172 TCAACTTCGCATATTGTGAACAAAA 58.501 32.000 0.00 0.00 41.40 2.44
2684 5494 6.066054 TCAACTTCGCATATTGTGAACAAA 57.934 33.333 0.00 0.00 41.40 2.83
2685 5495 5.681337 TCAACTTCGCATATTGTGAACAA 57.319 34.783 0.00 0.00 41.40 2.83
2686 5496 5.878332 ATCAACTTCGCATATTGTGAACA 57.122 34.783 0.00 0.00 41.40 3.18
2700 5510 9.581099 TGGTTTCTTCAGTTTAAAATCAACTTC 57.419 29.630 0.00 0.00 31.83 3.01
2725 5535 6.305877 GTCTGCTATTCGATATTCGTACCTTG 59.694 42.308 0.00 0.00 41.35 3.61
2732 5542 3.610242 GCCTGTCTGCTATTCGATATTCG 59.390 47.826 0.00 0.00 42.10 3.34
2733 5543 3.929610 GGCCTGTCTGCTATTCGATATTC 59.070 47.826 0.00 0.00 0.00 1.75
2734 5544 3.324846 TGGCCTGTCTGCTATTCGATATT 59.675 43.478 3.32 0.00 0.00 1.28
2735 5545 2.899900 TGGCCTGTCTGCTATTCGATAT 59.100 45.455 3.32 0.00 0.00 1.63
2736 5546 2.316108 TGGCCTGTCTGCTATTCGATA 58.684 47.619 3.32 0.00 0.00 2.92
2737 5547 1.123077 TGGCCTGTCTGCTATTCGAT 58.877 50.000 3.32 0.00 0.00 3.59
2738 5548 1.123077 ATGGCCTGTCTGCTATTCGA 58.877 50.000 3.32 0.00 0.00 3.71
2871 5683 0.037590 AACTTTGGGACCGCATAGCA 59.962 50.000 4.88 0.00 0.00 3.49
2884 5696 6.154363 TGGCCAAAAGGAGGATTATAACTTTG 59.846 38.462 0.61 0.00 32.27 2.77
2891 5703 5.246883 GCATTATGGCCAAAAGGAGGATTAT 59.753 40.000 10.96 0.00 0.00 1.28
2900 5712 4.567971 TCAGTTTGCATTATGGCCAAAAG 58.432 39.130 10.96 3.99 0.00 2.27
2912 5724 0.675633 GGCCACAGTTCAGTTTGCAT 59.324 50.000 0.00 0.00 0.00 3.96
2963 5775 4.447389 ATTGCAAAAAGTGGAATTGCGTAC 59.553 37.500 1.71 0.00 45.20 3.67
3040 5852 6.346096 ACTTTACCGAAATTGAGCTATGCTA 58.654 36.000 0.00 0.00 39.88 3.49
3092 5904 8.601845 AAACCAAACATTTAATACAGGAAAGC 57.398 30.769 0.00 0.00 0.00 3.51
3167 5980 9.118300 AGCATAATCTGTAGAAGAAATTTCAGG 57.882 33.333 19.99 0.00 38.79 3.86
3182 5995 4.959596 CTTGTCTGCAAGCATAATCTGT 57.040 40.909 0.00 0.00 44.54 3.41
3283 6096 8.543774 CGAATGAACTTATCTCAAACTCCATAC 58.456 37.037 0.00 0.00 0.00 2.39
3425 6238 7.049754 AGAAGGTTTACGACAAAAGGTAAAGA 58.950 34.615 0.00 0.00 38.77 2.52
3492 6305 9.953565 TTTGCAGAAAATTAGTAGTACAGGTAT 57.046 29.630 2.52 0.00 0.00 2.73
3493 6306 9.781633 TTTTGCAGAAAATTAGTAGTACAGGTA 57.218 29.630 2.52 0.00 0.00 3.08
3494 6307 8.685838 TTTTGCAGAAAATTAGTAGTACAGGT 57.314 30.769 2.52 0.00 0.00 4.00
3495 6308 8.999431 TCTTTTGCAGAAAATTAGTAGTACAGG 58.001 33.333 2.52 0.00 30.59 4.00
3553 6376 7.119262 AGAGTACCATACATTTTACACAGTTGC 59.881 37.037 0.00 0.00 0.00 4.17
3619 6442 9.866655 AGCTAATTCCATTGTAGAATCCAAATA 57.133 29.630 0.00 0.00 32.80 1.40
3623 6446 8.271458 TGTTAGCTAATTCCATTGTAGAATCCA 58.729 33.333 9.88 0.00 32.80 3.41
3642 6465 9.627123 TTATGTTGATAGCCTAAATTGTTAGCT 57.373 29.630 0.00 0.00 36.19 3.32
3682 6505 7.120579 CAGGCCGCATTATTAACATATCCTAAA 59.879 37.037 0.00 0.00 0.00 1.85
3683 6506 6.597672 CAGGCCGCATTATTAACATATCCTAA 59.402 38.462 0.00 0.00 0.00 2.69
3714 6537 3.564053 TCATAGTGATCTTGCATGGCA 57.436 42.857 0.00 0.00 36.47 4.92
3746 6569 9.974980 TCTCAGTTTTACTTTTGTTGAAGTTTT 57.025 25.926 0.00 0.00 40.24 2.43
3800 6624 5.754778 AGCAACGTTTGATGGTTAGTTAAC 58.245 37.500 0.00 0.00 35.50 2.01
4026 6850 4.027674 ACATACACTACAATTGGCACCA 57.972 40.909 10.83 0.00 0.00 4.17
4064 6888 7.219484 AGCCCACAATTATAATTACATCAGC 57.781 36.000 10.34 8.99 0.00 4.26
4206 7030 6.731292 ACAGCCAAAGTTTTCCTTCTAATT 57.269 33.333 0.00 0.00 31.27 1.40
4252 7076 5.350504 AATCACACTAGATAGCAGCACTT 57.649 39.130 0.00 0.00 0.00 3.16
4285 7109 3.341823 CCTGGAGATTCAACCAAGTCTG 58.658 50.000 0.00 0.00 35.67 3.51
4311 7135 5.404466 TGCCATAAAAACTAGCAGCAATT 57.596 34.783 0.00 0.00 0.00 2.32
4322 7146 8.567104 AGTTCAAAATTCCAATGCCATAAAAAC 58.433 29.630 0.00 0.00 0.00 2.43
4323 7147 8.566260 CAGTTCAAAATTCCAATGCCATAAAAA 58.434 29.630 0.00 0.00 0.00 1.94
4331 7155 6.595794 CATCAACAGTTCAAAATTCCAATGC 58.404 36.000 0.00 0.00 0.00 3.56
4332 7156 6.203145 TGCATCAACAGTTCAAAATTCCAATG 59.797 34.615 0.00 0.00 0.00 2.82
4350 7175 9.995003 AACATAATAAAAAGAAAGGTGCATCAA 57.005 25.926 0.00 0.00 0.00 2.57
4372 7197 9.661563 ATTGCAGAAATATGACAATTCAAACAT 57.338 25.926 0.00 0.00 34.61 2.71
4373 7198 9.142515 GATTGCAGAAATATGACAATTCAAACA 57.857 29.630 0.00 0.00 34.61 2.83
4374 7199 9.142515 TGATTGCAGAAATATGACAATTCAAAC 57.857 29.630 0.00 0.00 34.61 2.93
4392 7217 4.201881 ACATCATCATGAACGTGATTGCAG 60.202 41.667 7.43 0.94 36.72 4.41
4403 7228 8.938906 CATTATACGATTCCACATCATCATGAA 58.061 33.333 0.00 0.00 33.72 2.57
4405 7230 8.260270 ACATTATACGATTCCACATCATCATG 57.740 34.615 0.00 0.00 35.92 3.07
4406 7231 8.096414 TGACATTATACGATTCCACATCATCAT 58.904 33.333 0.00 0.00 0.00 2.45
4407 7232 7.441017 TGACATTATACGATTCCACATCATCA 58.559 34.615 0.00 0.00 0.00 3.07
4408 7233 7.889589 TGACATTATACGATTCCACATCATC 57.110 36.000 0.00 0.00 0.00 2.92
4409 7234 8.316946 AGATGACATTATACGATTCCACATCAT 58.683 33.333 0.00 0.00 34.73 2.45
4422 7248 7.776933 TGCAGTTCTTCAGATGACATTATAC 57.223 36.000 0.00 0.00 0.00 1.47
4423 7249 8.969260 ATTGCAGTTCTTCAGATGACATTATA 57.031 30.769 0.00 0.00 0.00 0.98
4445 7271 9.325198 TGTCACTATAATGCACCTACTTAATTG 57.675 33.333 0.00 0.00 0.00 2.32
4448 7274 8.315482 TGTTGTCACTATAATGCACCTACTTAA 58.685 33.333 0.00 0.00 0.00 1.85
4449 7275 7.842982 TGTTGTCACTATAATGCACCTACTTA 58.157 34.615 0.00 0.00 0.00 2.24
4455 7281 9.801873 AAATTATTGTTGTCACTATAATGCACC 57.198 29.630 0.00 0.00 39.17 5.01
4488 7314 0.318441 CGTCTTCACAAGCTCCTCCA 59.682 55.000 0.00 0.00 0.00 3.86
4495 7321 1.477105 GTTTTGGCGTCTTCACAAGC 58.523 50.000 0.00 0.00 0.00 4.01
4504 7330 2.010582 TTGCAGGTGGTTTTGGCGTC 62.011 55.000 0.00 0.00 0.00 5.19
4507 7333 1.591327 CGTTGCAGGTGGTTTTGGC 60.591 57.895 0.00 0.00 0.00 4.52
4508 7334 0.457851 TTCGTTGCAGGTGGTTTTGG 59.542 50.000 0.00 0.00 0.00 3.28
4518 7344 6.414408 ACTCTTCTAATGATTTCGTTGCAG 57.586 37.500 0.00 0.00 0.00 4.41
4528 7354 6.477053 TCTAGCTGCAACTCTTCTAATGAT 57.523 37.500 1.02 0.00 0.00 2.45
4532 7358 5.921962 TGATCTAGCTGCAACTCTTCTAA 57.078 39.130 1.02 0.00 0.00 2.10
4538 7364 4.928615 GTGGATATGATCTAGCTGCAACTC 59.071 45.833 1.02 0.00 0.00 3.01
4577 7426 4.568072 TTAAGAGCATGCTTTGGGAGTA 57.432 40.909 23.61 1.82 0.00 2.59
4607 7456 3.736433 CGTTTGTTTGGGCAATTGTGAGA 60.736 43.478 7.40 0.00 0.00 3.27
4615 7464 0.526662 AACGACGTTTGTTTGGGCAA 59.473 45.000 7.57 0.00 0.00 4.52
4649 7499 2.629656 GCTGTGTTTGCTGGGCGAT 61.630 57.895 0.00 0.00 0.00 4.58
4704 7564 3.764434 GGCGAATCCATCCAGATACTAGA 59.236 47.826 0.00 0.00 34.01 2.43
4727 7587 4.012374 GGAATGGTATCATCGCATCCATT 58.988 43.478 7.34 7.34 46.99 3.16
4729 7589 2.639347 AGGAATGGTATCATCGCATCCA 59.361 45.455 7.10 0.00 31.93 3.41
4745 7605 7.613585 TCACAATTGCATCATTTACAAGGAAT 58.386 30.769 5.05 0.00 0.00 3.01
4854 7716 8.658609 CGAATTAAGTTGAATTGGCATTTGAAT 58.341 29.630 0.00 0.00 0.00 2.57
4893 7755 1.504359 ACGAGCATTTTCCGTTCGAA 58.496 45.000 0.00 0.00 39.14 3.71
4895 7757 3.443054 TTAACGAGCATTTTCCGTTCG 57.557 42.857 0.00 0.00 44.10 3.95
4900 7762 3.673338 GCAAGGTTTAACGAGCATTTTCC 59.327 43.478 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.