AutoCloner

Multiple sequence alignment - TraesCS7B01G119900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G119900	chr7B	100.000	3260	0	0	1	3260	139432754	139429495	0.000000e+00	6021.0
1	TraesCS7B01G119900	chr7B	89.305	1281	134	1	990	2267	570919119	570920399	0.000000e+00	1604.0
2	TraesCS7B01G119900	chr7D	94.639	1772	72	13	867	2616	174794692	174792922	0.000000e+00	2724.0
3	TraesCS7B01G119900	chr7D	86.637	666	55	21	2609	3260	174792091	174791446	0.000000e+00	706.0
4	TraesCS7B01G119900	chr7D	88.710	186	10	4	838	1021	174794868	174794692	1.970000e-52	217.0
5	TraesCS7B01G119900	chr7A	88.417	1295	146	4	990	2282	611346749	611348041	0.000000e+00	1557.0
6	TraesCS7B01G119900	chr5A	80.937	1259	208	16	1019	2255	535880924	535879676	0.000000e+00	966.0
7	TraesCS7B01G119900	chr5B	80.125	1278	216	13	1015	2264	509483754	509482487	0.000000e+00	918.0
8	TraesCS7B01G119900	chr5B	83.704	810	111	13	7	799	17311196	17310391	0.000000e+00	745.0
9	TraesCS7B01G119900	chr5B	83.580	810	113	12	7	799	16998882	16998076	0.000000e+00	741.0
10	TraesCS7B01G119900	chr5B	83.933	778	77	20	1	749	229144771	229145529	0.000000e+00	701.0
11	TraesCS7B01G119900	chr5B	81.464	847	97	27	1	805	71286111	71285283	9.860000e-180	640.0
12	TraesCS7B01G119900	chr3D	86.047	817	80	13	1	803	560652317	560653113	0.000000e+00	846.0
13	TraesCS7B01G119900	chr3D	84.926	816	83	20	1	801	611882894	611883684	0.000000e+00	789.0
14	TraesCS7B01G119900	chr3D	81.111	180	26	8	631	805	370616554	370616378	1.580000e-28	137.0
15	TraesCS7B01G119900	chr1B	84.401	827	94	12	1	801	670876469	670875652	0.000000e+00	780.0
16	TraesCS7B01G119900	chr1B	83.433	839	72	39	1	802	606684943	606684135	0.000000e+00	717.0
17	TraesCS7B01G119900	chr1D	84.039	827	99	13	1	799	435464161	435464982	0.000000e+00	765.0
18	TraesCS7B01G119900	chr5D	83.952	835	94	19	1	799	249878219	249879049	0.000000e+00	763.0
19	TraesCS7B01G119900	chr3B	83.171	820	116	16	1	802	581093591	581094406	0.000000e+00	730.0
20	TraesCS7B01G119900	chr3B	85.757	674	78	10	134	801	819863911	819863250	0.000000e+00	697.0
21	TraesCS7B01G119900	chr6A	82.529	601	60	22	244	801	57890780	57891378	1.360000e-133	486.0
22	TraesCS7B01G119900	chr6D	81.272	566	57	24	277	799	168210006	168210565	2.340000e-111	412.0
23	TraesCS7B01G119900	chr2B	76.483	472	95	11	1	467	684751075	684751535	3.250000e-60	243.0
24	TraesCS7B01G119900	chr4D	87.432	183	17	6	1648	1827	16418347	16418168	4.260000e-49	206.0
25	TraesCS7B01G119900	chr4D	80.932	236	41	4	1829	2062	16413143	16412910	2.000000e-42	183.0
26	TraesCS7B01G119900	chrUn	77.483	151	25	8	1664	1810	49379907	49380052	7.500000e-12	82.4
27	TraesCS7B01G119900	chr4A	77.465	142	28	4	1664	1803	662625510	662625371	7.500000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G119900	chr7B	139429495	139432754	3259	True	6021.000000	6021	100.000000	1	3260	1	chr7B.!!$R1	3259
1	TraesCS7B01G119900	chr7B	570919119	570920399	1280	False	1604.000000	1604	89.305000	990	2267	1	chr7B.!!$F1	1277
2	TraesCS7B01G119900	chr7D	174791446	174794868	3422	True	1215.666667	2724	89.995333	838	3260	3	chr7D.!!$R1	2422
3	TraesCS7B01G119900	chr7A	611346749	611348041	1292	False	1557.000000	1557	88.417000	990	2282	1	chr7A.!!$F1	1292
4	TraesCS7B01G119900	chr5A	535879676	535880924	1248	True	966.000000	966	80.937000	1019	2255	1	chr5A.!!$R1	1236
5	TraesCS7B01G119900	chr5B	509482487	509483754	1267	True	918.000000	918	80.125000	1015	2264	1	chr5B.!!$R4	1249
6	TraesCS7B01G119900	chr5B	17310391	17311196	805	True	745.000000	745	83.704000	7	799	1	chr5B.!!$R2	792
7	TraesCS7B01G119900	chr5B	16998076	16998882	806	True	741.000000	741	83.580000	7	799	1	chr5B.!!$R1	792
8	TraesCS7B01G119900	chr5B	229144771	229145529	758	False	701.000000	701	83.933000	1	749	1	chr5B.!!$F1	748
9	TraesCS7B01G119900	chr5B	71285283	71286111	828	True	640.000000	640	81.464000	1	805	1	chr5B.!!$R3	804
10	TraesCS7B01G119900	chr3D	560652317	560653113	796	False	846.000000	846	86.047000	1	803	1	chr3D.!!$F1	802
11	TraesCS7B01G119900	chr3D	611882894	611883684	790	False	789.000000	789	84.926000	1	801	1	chr3D.!!$F2	800
12	TraesCS7B01G119900	chr1B	670875652	670876469	817	True	780.000000	780	84.401000	1	801	1	chr1B.!!$R2	800
13	TraesCS7B01G119900	chr1B	606684135	606684943	808	True	717.000000	717	83.433000	1	802	1	chr1B.!!$R1	801
14	TraesCS7B01G119900	chr1D	435464161	435464982	821	False	765.000000	765	84.039000	1	799	1	chr1D.!!$F1	798
15	TraesCS7B01G119900	chr5D	249878219	249879049	830	False	763.000000	763	83.952000	1	799	1	chr5D.!!$F1	798
16	TraesCS7B01G119900	chr3B	581093591	581094406	815	False	730.000000	730	83.171000	1	802	1	chr3B.!!$F1	801
17	TraesCS7B01G119900	chr3B	819863250	819863911	661	True	697.000000	697	85.757000	134	801	1	chr3B.!!$R1	667
18	TraesCS7B01G119900	chr6A	57890780	57891378	598	False	486.000000	486	82.529000	244	801	1	chr6A.!!$F1	557
19	TraesCS7B01G119900	chr6D	168210006	168210565	559	False	412.000000	412	81.272000	277	799	1	chr6D.!!$F1	522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
807	890	0.034616	GGAGATGCTCTTAGCGCCAT	59.965	55.0	2.29	0.0	46.26	4.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2327	2607	0.392193	CCAGACCAGACAGTGATGCC	60.392	60.0	0.0	0.0	0.0	4.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
68	72	2.038007	TCCGGCAAGCTCTCCTCT	59.962	61.111	0.00	0.00	0.00	3.69
98	102	3.710722	CTCTGCCCCGTCAAGCCT	61.711	66.667	0.00	0.00	0.00	4.58
106	110	2.345244	CGTCAAGCCTGAGCCAGT	59.655	61.111	0.00	0.00	41.25	4.00
429	436	4.404098	GACCGTCCAACGCCCCAT	62.404	66.667	0.00	0.00	40.91	4.00
582	622	1.067142	CAGTGGCTAGGCGTAGTTTGA	60.067	52.381	14.52	0.00	0.00	2.69
642	694	4.619336	TCAATAAAATTTCGCCGAGTTTGC	59.381	37.500	0.00	0.00	0.00	3.68
658	731	5.108780	CGAGTTTGCACAAATTTGTACGAAG	60.109	40.000	22.87	11.75	39.91	3.79
683	756	0.595053	CGAGCTCGCGTGATATTGGT	60.595	55.000	25.07	0.00	0.00	3.67
805	888	1.663074	CGGAGATGCTCTTAGCGCC	60.663	63.158	2.29	0.00	46.26	6.53
806	889	1.443407	GGAGATGCTCTTAGCGCCA	59.557	57.895	2.29	0.00	46.26	5.69
807	890	0.034616	GGAGATGCTCTTAGCGCCAT	59.965	55.000	2.29	0.00	46.26	4.40
808	891	1.427435	GAGATGCTCTTAGCGCCATC	58.573	55.000	2.29	8.97	46.26	3.51
809	892	0.755079	AGATGCTCTTAGCGCCATCA	59.245	50.000	19.60	5.16	46.26	3.07
810	893	1.139654	AGATGCTCTTAGCGCCATCAA	59.860	47.619	19.60	3.60	46.26	2.57
811	894	1.262683	GATGCTCTTAGCGCCATCAAC	59.737	52.381	14.63	0.00	46.26	3.18
812	895	0.036483	TGCTCTTAGCGCCATCAACA	60.036	50.000	2.29	0.00	46.26	3.33
813	896	0.375106	GCTCTTAGCGCCATCAACAC	59.625	55.000	2.29	0.00	0.00	3.32
814	897	1.009829	CTCTTAGCGCCATCAACACC	58.990	55.000	2.29	0.00	0.00	4.16
815	898	0.323302	TCTTAGCGCCATCAACACCA	59.677	50.000	2.29	0.00	0.00	4.17
816	899	1.164411	CTTAGCGCCATCAACACCAA	58.836	50.000	2.29	0.00	0.00	3.67
817	900	1.539388	CTTAGCGCCATCAACACCAAA	59.461	47.619	2.29	0.00	0.00	3.28
818	901	1.610363	TAGCGCCATCAACACCAAAA	58.390	45.000	2.29	0.00	0.00	2.44
819	902	0.749649	AGCGCCATCAACACCAAAAA	59.250	45.000	2.29	0.00	0.00	1.94
820	903	1.139163	GCGCCATCAACACCAAAAAG	58.861	50.000	0.00	0.00	0.00	2.27
821	904	1.782044	CGCCATCAACACCAAAAAGG	58.218	50.000	0.00	0.00	45.67	3.11
894	977	8.788325	ATCTAACCACATTTTTAGTAGGTGAC	57.212	34.615	0.00	0.00	0.00	3.67
898	981	4.378046	CCACATTTTTAGTAGGTGACGTGC	60.378	45.833	0.00	0.00	0.00	5.34
902	985	1.237533	TTAGTAGGTGACGTGCGTGA	58.762	50.000	0.67	0.00	0.00	4.35
967	1215	0.936764	CGCGCTACTGTATGCTCCTG	60.937	60.000	5.56	0.00	0.00	3.86
973	1221	1.200760	ACTGTATGCTCCTGTGGCCA	61.201	55.000	0.00	0.00	0.00	5.36
995	1244	1.920325	TTGACCCAGGAGCCAGGAG	60.920	63.158	0.00	0.00	0.00	3.69
1071	1320	2.100631	GTTCGGTCACATGCTCCCG	61.101	63.158	10.37	10.37	41.75	5.14
1272	1530	1.671901	GCGAGCTCCTACAGAAGGCT	61.672	60.000	8.47	0.00	46.10	4.58
1305	1563	2.915869	GGGCCATTCTCCGCCTTA	59.084	61.111	4.39	0.00	45.01	2.69
1312	1570	2.036089	CCATTCTCCGCCTTACTAGACC	59.964	54.545	0.00	0.00	0.00	3.85
1457	1715	2.663478	GCGTTCCGTGCATGTCGAA	61.663	57.895	15.81	6.56	0.00	3.71
1646	1922	2.636412	CGCTGAGGTCCAACGGAGA	61.636	63.158	0.00	0.00	31.22	3.71
1851	2130	4.016706	CCGGGTTTCCAGGAGCGT	62.017	66.667	0.00	0.00	0.00	5.07
1857	2136	1.543871	GGTTTCCAGGAGCGTACCAAA	60.544	52.381	7.07	0.00	0.00	3.28
1872	2151	3.993584	AAACACCGCGGGCTCGTA	61.994	61.111	31.76	0.00	38.89	3.43
1881	2160	1.219664	CGGGCTCGTAACAATGGGA	59.780	57.895	0.00	0.00	0.00	4.37
1886	2165	1.065551	GCTCGTAACAATGGGAATGGC	59.934	52.381	0.00	0.00	0.00	4.40
2091	2370	2.483013	CGGCAAGGATGGATCGTCTTTA	60.483	50.000	0.00	0.00	0.00	1.85
2181	2460	1.481871	CCAATGCCAAGAAGCTCCAT	58.518	50.000	0.00	0.00	0.00	3.41
2209	2488	0.670239	CGCGGATACTGCATGCCATA	60.670	55.000	16.68	7.89	36.17	2.74
2213	2492	3.603532	CGGATACTGCATGCCATAAGAT	58.396	45.455	16.68	0.00	0.00	2.40
2346	2626	0.392193	GGCATCACTGTCTGGTCTGG	60.392	60.000	0.00	0.00	0.00	3.86
2353	2633	3.135712	TCACTGTCTGGTCTGGCTAAAAA	59.864	43.478	0.00	0.00	0.00	1.94
2462	2746	4.383850	TTGCGGGAAAATGTATCATTGG	57.616	40.909	0.00	0.00	0.00	3.16
2490	2774	6.316140	TCCTATGATTTTCACTTGATGGTTCG	59.684	38.462	0.00	0.00	0.00	3.95
2496	2780	9.825109	TGATTTTCACTTGATGGTTCGTATATA	57.175	29.630	0.00	0.00	0.00	0.86
2538	2822	3.060736	TCTGTTAAATGCGCCAACCTA	57.939	42.857	4.18	0.00	0.00	3.08
2556	2840	8.914011	GCCAACCTATGAAAATAGAGGTAAAAT	58.086	33.333	0.00	0.00	41.21	1.82
2590	2874	8.840321	TCAACTTCAGAAAAGTCCTAAAGAATG	58.160	33.333	0.00	0.00	0.00	2.67
2626	3748	7.793927	AAGTATTTCCTAAGAGCTTATGTGC	57.206	36.000	0.00	0.00	0.00	4.57
2627	3749	5.986135	AGTATTTCCTAAGAGCTTATGTGCG	59.014	40.000	0.00	0.00	38.13	5.34
2640	3762	2.798834	ATGTGCGGATTTTAACGACG	57.201	45.000	0.00	0.00	0.00	5.12
2641	3763	1.780806	TGTGCGGATTTTAACGACGA	58.219	45.000	0.00	0.00	0.00	4.20
2710	3833	1.439679	GCCGAACGTCCTCAATTTCT	58.560	50.000	0.00	0.00	0.00	2.52
2807	3937	6.272318	ACTGTTCATCGAGCATTTTGAAAAA	58.728	32.000	0.00	0.00	30.51	1.94
2816	3946	8.351495	TCGAGCATTTTGAAAAATATTATGGC	57.649	30.769	0.00	0.64	36.52	4.40
2820	3950	7.771826	AGCATTTTGAAAAATATTATGGCAGCT	59.228	29.630	0.00	0.86	36.52	4.24
2859	3989	7.962918	CCTCGTCTTTATTGGAAATGTTTGTAG	59.037	37.037	0.00	0.00	0.00	2.74
2886	4016	7.563888	TTCAAGAAATCTATCTGGCATTCAG	57.436	36.000	0.00	0.00	44.68	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
57	61	2.720134	GCGAGCCAGAGGAGAGCTT	61.720	63.158	0.00	0.00	36.87	3.74
58	62	3.146913	GCGAGCCAGAGGAGAGCT	61.147	66.667	0.00	0.00	40.24	4.09
84	88	4.020617	CTCAGGCTTGACGGGGCA	62.021	66.667	0.00	0.00	0.00	5.36
98	102	2.574018	CGGTGTCTCCACTGGCTCA	61.574	63.158	0.00	0.00	43.09	4.26
239	243	4.028490	GGGGCCACCATGTCGACA	62.028	66.667	22.48	22.48	39.85	4.35
274	280	0.970427	ATCCGCCTTCGCCCATTTTT	60.970	50.000	0.00	0.00	0.00	1.94
293	299	1.153647	CACCTGCTCGCGGATGTAA	60.154	57.895	6.13	0.00	0.00	2.41
325	331	4.221422	GGAGCTCCGCGTATGCCA	62.221	66.667	19.06	0.00	38.08	4.92
582	622	6.569179	AAGGATAAAACATGCAAACTACGT	57.431	33.333	0.00	0.00	0.00	3.57
642	694	3.662186	GGCGAACTTCGTACAAATTTGTG	59.338	43.478	29.72	16.45	42.81	3.33
973	1221	2.397413	CTGGCTCCTGGGTCAACGTT	62.397	60.000	0.00	0.00	0.00	3.99
1030	1279	2.572284	CCACGGGAAGAGGACGAC	59.428	66.667	0.00	0.00	31.73	4.34
1105	1354	2.649034	GAAGGAGACGCGGTGACA	59.351	61.111	12.47	0.00	0.00	3.58
1194	1443	4.778143	GGAAGGCCATCCACGCGT	62.778	66.667	22.26	5.58	39.42	6.01
1305	1563	0.109226	GCTTCTTGTCGCGGTCTAGT	60.109	55.000	6.13	0.00	0.00	2.57
1312	1570	3.479269	GTCCGGCTTCTTGTCGCG	61.479	66.667	0.00	0.00	43.31	5.87
1392	1650	2.079158	CAAGTGGCGAACATCACAGAT	58.921	47.619	0.00	0.00	36.43	2.90
1395	1653	1.948508	GCAAGTGGCGAACATCACA	59.051	52.632	0.00	0.00	36.43	3.58
1447	1705	3.064207	GGTTAACAGTCTTCGACATGCA	58.936	45.455	8.10	0.00	34.60	3.96
1457	1715	2.100989	CTAGCTCCGGGTTAACAGTCT	58.899	52.381	8.10	1.40	0.00	3.24
1461	1719	0.979187	CCCCTAGCTCCGGGTTAACA	60.979	60.000	17.29	0.00	40.24	2.41
1680	1959	3.618774	GTAGACGACGGATTTCGCT	57.381	52.632	0.00	0.00	43.06	4.93
1851	2130	3.887335	GAGCCCGCGGTGTTTGGTA	62.887	63.158	26.12	0.00	0.00	3.25
1857	2136	4.729856	GTTACGAGCCCGCGGTGT	62.730	66.667	26.12	18.45	39.95	4.16
1881	2160	4.431131	CTGGTCTGCGGGGCCATT	62.431	66.667	4.39	0.00	0.00	3.16
2091	2370	4.117661	GCGACGCCTTCTCGGTCT	62.118	66.667	9.14	0.00	34.25	3.85
2128	2407	2.904434	GTCTACCTTCTTCCTCCACCAA	59.096	50.000	0.00	0.00	0.00	3.67
2181	2460	1.536072	GCAGTATCCGCGACAATCTGA	60.536	52.381	8.23	0.00	0.00	3.27
2209	2488	7.537715	TGAACGAAATTATCAATGCACATCTT	58.462	30.769	0.00	0.00	0.00	2.40
2213	2492	5.094812	GCTGAACGAAATTATCAATGCACA	58.905	37.500	0.00	0.00	0.00	4.57
2285	2564	2.871096	TTAGGCCCTACCACACAAAG	57.129	50.000	0.00	0.00	43.14	2.77
2321	2601	2.037136	AGACAGTGATGCCTTGCGC	61.037	57.895	0.00	0.00	38.31	6.09
2326	2606	0.612229	CAGACCAGACAGTGATGCCT	59.388	55.000	0.00	0.00	0.00	4.75
2327	2607	0.392193	CCAGACCAGACAGTGATGCC	60.392	60.000	0.00	0.00	0.00	4.40
2443	2725	3.130340	ACACCAATGATACATTTTCCCGC	59.870	43.478	0.00	0.00	0.00	6.13
2444	2726	4.202010	GGACACCAATGATACATTTTCCCG	60.202	45.833	0.00	0.00	0.00	5.14
2462	2746	6.375455	ACCATCAAGTGAAAATCATAGGACAC	59.625	38.462	0.00	0.00	0.00	3.67
2556	2840	8.437575	AGGACTTTTCTGAAGTTGAAATACCTA	58.562	33.333	0.00	0.00	33.52	3.08
2590	2874	9.444600	TCTTAGGAAATACTTTGTACAATGGAC	57.555	33.333	21.54	5.61	0.00	4.02
2621	3743	2.339418	TCGTCGTTAAAATCCGCACAT	58.661	42.857	0.00	0.00	0.00	3.21
2626	3748	6.663480	AAACATTTTCGTCGTTAAAATCCG	57.337	33.333	2.58	0.00	35.00	4.18
2627	3749	9.768125	GTTTAAACATTTTCGTCGTTAAAATCC	57.232	29.630	13.51	0.00	35.00	3.01
2640	3762	8.655651	TCTTCAACCCATGTTTAAACATTTTC	57.344	30.769	27.33	0.00	46.95	2.29
2641	3763	9.108284	CTTCTTCAACCCATGTTTAAACATTTT	57.892	29.630	27.33	18.37	46.95	1.82
2710	3833	1.845664	TGCCTCTGCCCCAGTACAA	60.846	57.895	0.00	0.00	36.33	2.41
2776	3906	6.801539	AATGCTCGATGAACAGTTAAAGAA	57.198	33.333	0.00	0.00	0.00	2.52
2778	3908	7.077605	TCAAAATGCTCGATGAACAGTTAAAG	58.922	34.615	0.00	0.00	0.00	1.85
2783	3913	5.437289	TTTCAAAATGCTCGATGAACAGT	57.563	34.783	0.00	0.00	31.96	3.55
2784	3914	6.752335	TTTTTCAAAATGCTCGATGAACAG	57.248	33.333	0.00	0.00	31.96	3.16
2792	3922	8.129161	TGCCATAATATTTTTCAAAATGCTCG	57.871	30.769	7.63	0.00	38.90	5.03
2828	3958	8.575649	ACATTTCCAATAAAGACGAGGTAATT	57.424	30.769	0.00	0.00	0.00	1.40
2829	3959	8.575649	AACATTTCCAATAAAGACGAGGTAAT	57.424	30.769	0.00	0.00	0.00	1.89
2830	3960	7.989416	AACATTTCCAATAAAGACGAGGTAA	57.011	32.000	0.00	0.00	0.00	2.85
2831	3961	7.446013	ACAAACATTTCCAATAAAGACGAGGTA	59.554	33.333	0.00	0.00	0.00	3.08
2832	3962	6.264518	ACAAACATTTCCAATAAAGACGAGGT	59.735	34.615	0.00	0.00	0.00	3.85
2833	3963	6.677913	ACAAACATTTCCAATAAAGACGAGG	58.322	36.000	0.00	0.00	0.00	4.63
2859	3989	5.762825	TGCCAGATAGATTTCTTGAATGC	57.237	39.130	0.00	0.00	0.00	3.56
2897	4027	9.872721	ATGTCACATATATTGTTTTGAAATGCA	57.127	25.926	0.00	0.00	36.00	3.96
3070	4203	8.947055	TGAAACCGGTTAATAAACTATCCTAC	57.053	34.615	22.60	0.00	35.81	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.