Multiple sequence alignment - TraesCS7B01G118500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G118500 chr7B 100.000 2555 0 0 1 2555 137881671 137879117 0.000000e+00 4719.0
1 TraesCS7B01G118500 chr7B 90.449 178 16 1 1705 1881 692934978 692934801 1.530000e-57 233.0
2 TraesCS7B01G118500 chr7D 92.816 1754 57 21 1 1716 171373687 171371965 0.000000e+00 2477.0
3 TraesCS7B01G118500 chr7D 93.529 340 16 4 1886 2223 171371963 171371628 3.800000e-138 501.0
4 TraesCS7B01G118500 chr7D 92.357 157 12 0 2399 2555 95940986 95941142 9.200000e-55 224.0
5 TraesCS7B01G118500 chr7D 92.405 158 11 1 2399 2555 175910460 175910617 9.200000e-55 224.0
6 TraesCS7B01G118500 chr7D 92.357 157 12 0 2399 2555 563360739 563360895 9.200000e-55 224.0
7 TraesCS7B01G118500 chr7D 84.821 224 25 7 1716 1931 50710242 50710464 1.540000e-52 217.0
8 TraesCS7B01G118500 chr7D 87.302 126 13 2 871 993 171371097 171371222 9.530000e-30 141.0
9 TraesCS7B01G118500 chr7A 91.827 1248 62 15 488 1708 174274655 174273421 0.000000e+00 1703.0
10 TraesCS7B01G118500 chr7A 92.734 523 15 4 1 505 174275189 174274672 0.000000e+00 734.0
11 TraesCS7B01G118500 chr7A 91.065 291 19 5 1886 2170 174273415 174273126 1.110000e-103 387.0
12 TraesCS7B01G118500 chr7A 84.772 197 20 6 871 1062 174221790 174221981 3.360000e-44 189.0
13 TraesCS7B01G118500 chr1A 93.333 165 11 0 1717 1881 592559187 592559351 7.060000e-61 244.0
14 TraesCS7B01G118500 chr6B 86.222 225 30 1 1246 1469 566535486 566535710 2.540000e-60 243.0
15 TraesCS7B01G118500 chr5B 91.908 173 14 0 1710 1882 50349995 50349823 2.540000e-60 243.0
16 TraesCS7B01G118500 chr5B 92.308 169 13 0 1713 1881 427931198 427931366 9.130000e-60 241.0
17 TraesCS7B01G118500 chr5B 91.720 157 13 0 2399 2555 505579581 505579425 4.280000e-53 219.0
18 TraesCS7B01G118500 chr5B 91.139 158 13 1 2399 2555 429432772 429432615 1.990000e-51 213.0
19 TraesCS7B01G118500 chr3D 91.765 170 13 1 1713 1882 217587727 217587559 4.250000e-58 235.0
20 TraesCS7B01G118500 chr3D 91.667 156 13 0 2399 2554 113579908 113579753 1.540000e-52 217.0
21 TraesCS7B01G118500 chr3D 91.139 158 12 2 2399 2555 398535721 398535565 1.990000e-51 213.0
22 TraesCS7B01G118500 chr5D 90.395 177 17 0 1713 1889 464930363 464930187 1.530000e-57 233.0
23 TraesCS7B01G118500 chr6A 88.830 188 20 1 1706 1892 297678614 297678801 1.980000e-56 230.0
24 TraesCS7B01G118500 chr5A 88.830 188 18 3 1706 1893 651496813 651496997 7.110000e-56 228.0
25 TraesCS7B01G118500 chr4D 91.772 158 12 1 2399 2555 205031010 205031167 4.280000e-53 219.0
26 TraesCS7B01G118500 chr4B 91.720 157 13 0 2399 2555 648575013 648574857 4.280000e-53 219.0
27 TraesCS7B01G118500 chr2B 78.571 210 34 9 1716 1921 659017050 659017252 7.420000e-26 128.0
28 TraesCS7B01G118500 chr3A 78.621 145 27 3 1770 1914 19470966 19471106 2.710000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G118500 chr7B 137879117 137881671 2554 True 4719.000000 4719 100.000000 1 2555 1 chr7B.!!$R1 2554
1 TraesCS7B01G118500 chr7D 171371628 171373687 2059 True 1489.000000 2477 93.172500 1 2223 2 chr7D.!!$R1 2222
2 TraesCS7B01G118500 chr7A 174273126 174275189 2063 True 941.333333 1703 91.875333 1 2170 3 chr7A.!!$R1 2169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 1003 0.602905 CCGTTCACAAGACTCCCCAC 60.603 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2392 0.035458 CGGCATAATCCAGGAGTCCC 59.965 60.0 5.25 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
252 275 0.952010 GCGTTAGCCCGGTGAGAAAA 60.952 55.000 0.00 0.00 37.42 2.29
253 276 1.515081 CGTTAGCCCGGTGAGAAAAA 58.485 50.000 0.00 0.00 0.00 1.94
394 422 2.587956 CATCATGAAACGCAACCACAG 58.412 47.619 0.00 0.00 0.00 3.66
420 463 6.119240 AGGACATGTAAATGGATGATCGAT 57.881 37.500 0.00 0.00 0.00 3.59
421 464 6.169094 AGGACATGTAAATGGATGATCGATC 58.831 40.000 18.72 18.72 0.00 3.69
422 465 5.062683 GGACATGTAAATGGATGATCGATCG 59.937 44.000 20.03 9.36 30.87 3.69
423 466 4.389992 ACATGTAAATGGATGATCGATCGC 59.610 41.667 20.03 14.13 30.87 4.58
424 467 4.257267 TGTAAATGGATGATCGATCGCT 57.743 40.909 20.03 10.26 30.87 4.93
425 468 4.631131 TGTAAATGGATGATCGATCGCTT 58.369 39.130 20.03 7.89 30.87 4.68
426 469 4.686091 TGTAAATGGATGATCGATCGCTTC 59.314 41.667 20.03 15.52 30.87 3.86
427 470 3.391506 AATGGATGATCGATCGCTTCA 57.608 42.857 20.03 18.65 30.87 3.02
428 471 2.428888 TGGATGATCGATCGCTTCAG 57.571 50.000 20.03 0.00 30.87 3.02
429 472 1.066914 GGATGATCGATCGCTTCAGC 58.933 55.000 20.03 20.74 37.78 4.26
479 522 5.999205 ACTAGTACTATCCTAGCTAGCGA 57.001 43.478 15.74 13.85 36.23 4.93
481 524 6.576185 ACTAGTACTATCCTAGCTAGCGATC 58.424 44.000 21.09 11.57 36.23 3.69
484 527 2.010497 CTATCCTAGCTAGCGATCGCA 58.990 52.381 38.60 23.98 44.88 5.10
525 602 1.439644 CCAACCTCCGAGCTAGAGC 59.560 63.158 7.58 0.00 42.49 4.09
564 648 4.031129 CCCACCTCTGCTGCAGCT 62.031 66.667 36.61 16.02 42.66 4.24
565 649 2.663075 CCCACCTCTGCTGCAGCTA 61.663 63.158 36.61 24.15 42.66 3.32
566 650 1.153409 CCACCTCTGCTGCAGCTAG 60.153 63.158 36.61 30.46 42.66 3.42
567 651 1.814586 CACCTCTGCTGCAGCTAGC 60.815 63.158 36.61 14.62 43.95 3.42
822 915 1.633774 TCTTCAGGTGTCTGGACTCC 58.366 55.000 12.32 12.32 43.36 3.85
840 933 1.215173 TCCGGATCATGGAGCCAATTT 59.785 47.619 0.00 0.00 38.11 1.82
846 940 1.291637 TCATGGAGCCAATTTCCCCAT 59.708 47.619 0.00 0.00 38.07 4.00
855 949 3.181462 GCCAATTTCCCCATGATCCTTTC 60.181 47.826 0.00 0.00 0.00 2.62
875 969 1.420138 CCCGGCTATAAATCCACCACT 59.580 52.381 0.00 0.00 0.00 4.00
886 980 2.223803 TCCACCACTCCTCTCTCTTC 57.776 55.000 0.00 0.00 0.00 2.87
897 991 2.094442 CCTCTCTCTTCCTTCCGTTCAC 60.094 54.545 0.00 0.00 0.00 3.18
908 1002 0.761323 TCCGTTCACAAGACTCCCCA 60.761 55.000 0.00 0.00 0.00 4.96
909 1003 0.602905 CCGTTCACAAGACTCCCCAC 60.603 60.000 0.00 0.00 0.00 4.61
910 1004 0.602905 CGTTCACAAGACTCCCCACC 60.603 60.000 0.00 0.00 0.00 4.61
912 1006 1.764571 TTCACAAGACTCCCCACCCG 61.765 60.000 0.00 0.00 0.00 5.28
914 1008 2.214920 ACAAGACTCCCCACCCGTC 61.215 63.158 0.00 0.00 0.00 4.79
915 1009 2.606826 AAGACTCCCCACCCGTCC 60.607 66.667 0.00 0.00 0.00 4.79
924 1020 1.597461 CCACCCGTCCTCTCTTTCC 59.403 63.158 0.00 0.00 0.00 3.13
926 1022 0.905337 CACCCGTCCTCTCTTTCCCT 60.905 60.000 0.00 0.00 0.00 4.20
935 1031 2.499693 CCTCTCTTTCCCTTCTCCACTC 59.500 54.545 0.00 0.00 0.00 3.51
947 1043 4.445162 CCTTCTCCACTCCGACTATACTCT 60.445 50.000 0.00 0.00 0.00 3.24
948 1044 4.074627 TCTCCACTCCGACTATACTCTG 57.925 50.000 0.00 0.00 0.00 3.35
962 1067 8.832521 CGACTATACTCTGTTATTTCTCTGTCT 58.167 37.037 0.00 0.00 0.00 3.41
975 1080 3.016031 TCTCTGTCTTCTAGCTCAGCTG 58.984 50.000 10.31 7.63 40.10 4.24
981 1086 1.403679 CTTCTAGCTCAGCTGCGTACT 59.596 52.381 10.31 5.87 40.10 2.73
983 1088 1.941294 TCTAGCTCAGCTGCGTACTAC 59.059 52.381 10.31 0.00 40.10 2.73
1011 1116 1.676746 CAAGCAGCATGTATCCAGCT 58.323 50.000 0.00 0.00 39.31 4.24
1020 1125 0.983467 TGTATCCAGCTGAGGTTGCA 59.017 50.000 17.39 1.31 0.00 4.08
1057 1162 2.813908 CGTACTTGCCGCCACCTC 60.814 66.667 0.00 0.00 0.00 3.85
1268 1376 2.440430 CGCCGAGGAGAGGAGGAA 60.440 66.667 0.00 0.00 0.00 3.36
1540 1648 1.635663 CGCCGTTGGTGAAGATGACC 61.636 60.000 0.00 0.00 34.74 4.02
1711 1819 7.441157 TCTTTGCTCCATGTACCGATTAAATAG 59.559 37.037 0.00 0.00 0.00 1.73
1712 1820 6.169557 TGCTCCATGTACCGATTAAATAGT 57.830 37.500 0.00 0.00 0.00 2.12
1713 1821 7.292713 TGCTCCATGTACCGATTAAATAGTA 57.707 36.000 0.00 0.00 0.00 1.82
1714 1822 7.903145 TGCTCCATGTACCGATTAAATAGTAT 58.097 34.615 0.00 0.00 0.00 2.12
1715 1823 9.027202 TGCTCCATGTACCGATTAAATAGTATA 57.973 33.333 0.00 0.00 0.00 1.47
1725 1833 9.418839 ACCGATTAAATAGTATATACTCCCTCC 57.581 37.037 18.68 3.75 37.73 4.30
1726 1834 8.566260 CCGATTAAATAGTATATACTCCCTCCG 58.434 40.741 18.68 13.48 37.73 4.63
1727 1835 8.566260 CGATTAAATAGTATATACTCCCTCCGG 58.434 40.741 18.68 0.00 37.73 5.14
1728 1836 9.418839 GATTAAATAGTATATACTCCCTCCGGT 57.581 37.037 18.68 0.77 37.73 5.28
1729 1837 8.814038 TTAAATAGTATATACTCCCTCCGGTC 57.186 38.462 18.68 0.00 37.73 4.79
1730 1838 3.735720 AGTATATACTCCCTCCGGTCC 57.264 52.381 9.71 0.00 0.00 4.46
1731 1839 2.991713 AGTATATACTCCCTCCGGTCCA 59.008 50.000 9.71 0.00 0.00 4.02
1732 1840 3.400322 AGTATATACTCCCTCCGGTCCAA 59.600 47.826 9.71 0.00 0.00 3.53
1733 1841 2.852714 TATACTCCCTCCGGTCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
1734 1842 1.961133 ATACTCCCTCCGGTCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1735 1843 1.961133 TACTCCCTCCGGTCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1736 1844 1.961133 ACTCCCTCCGGTCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1737 1845 2.488836 ACTCCCTCCGGTCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
1738 1846 2.850568 ACTCCCTCCGGTCCAAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
1739 1847 3.268595 ACTCCCTCCGGTCCAAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
1740 1848 3.626930 TCCCTCCGGTCCAAAATATTTG 58.373 45.455 0.00 0.00 0.00 2.32
1741 1849 3.010808 TCCCTCCGGTCCAAAATATTTGT 59.989 43.478 0.00 0.00 0.00 2.83
1742 1850 3.380320 CCCTCCGGTCCAAAATATTTGTC 59.620 47.826 0.00 0.00 0.00 3.18
1743 1851 4.270008 CCTCCGGTCCAAAATATTTGTCT 58.730 43.478 0.00 0.00 0.00 3.41
1744 1852 4.705023 CCTCCGGTCCAAAATATTTGTCTT 59.295 41.667 0.00 0.00 0.00 3.01
1745 1853 5.185056 CCTCCGGTCCAAAATATTTGTCTTT 59.815 40.000 0.00 0.00 0.00 2.52
1746 1854 6.295067 CCTCCGGTCCAAAATATTTGTCTTTT 60.295 38.462 0.00 0.00 0.00 2.27
1747 1855 7.056844 TCCGGTCCAAAATATTTGTCTTTTT 57.943 32.000 0.00 0.00 0.00 1.94
1748 1856 8.179509 TCCGGTCCAAAATATTTGTCTTTTTA 57.820 30.769 0.00 0.00 0.00 1.52
1749 1857 8.301002 TCCGGTCCAAAATATTTGTCTTTTTAG 58.699 33.333 0.00 0.00 0.00 1.85
1750 1858 8.301002 CCGGTCCAAAATATTTGTCTTTTTAGA 58.699 33.333 0.39 0.00 0.00 2.10
1751 1859 9.855021 CGGTCCAAAATATTTGTCTTTTTAGAT 57.145 29.630 0.39 0.00 0.00 1.98
1777 1885 8.731275 ATTTCAAATGAACTATCACATACGGA 57.269 30.769 0.00 0.00 38.69 4.69
1778 1886 7.534085 TTCAAATGAACTATCACATACGGAC 57.466 36.000 0.00 0.00 38.69 4.79
1779 1887 5.746721 TCAAATGAACTATCACATACGGACG 59.253 40.000 0.00 0.00 38.69 4.79
1780 1888 4.913335 ATGAACTATCACATACGGACGT 57.087 40.909 1.98 1.98 38.69 4.34
1781 1889 6.381481 AATGAACTATCACATACGGACGTA 57.619 37.500 7.05 7.05 38.69 3.57
1782 1890 6.570672 ATGAACTATCACATACGGACGTAT 57.429 37.500 11.25 11.25 38.69 3.06
1783 1891 7.677454 ATGAACTATCACATACGGACGTATA 57.323 36.000 15.98 3.05 37.69 1.47
1784 1892 7.677454 TGAACTATCACATACGGACGTATAT 57.323 36.000 15.98 9.68 39.07 0.86
1785 1893 8.776376 TGAACTATCACATACGGACGTATATA 57.224 34.615 15.98 10.22 39.07 0.86
1786 1894 9.218440 TGAACTATCACATACGGACGTATATAA 57.782 33.333 15.98 6.02 39.07 0.98
1787 1895 9.483062 GAACTATCACATACGGACGTATATAAC 57.517 37.037 15.98 4.11 39.07 1.89
1788 1896 7.978982 ACTATCACATACGGACGTATATAACC 58.021 38.462 15.98 0.00 39.07 2.85
1789 1897 6.822667 ATCACATACGGACGTATATAACCA 57.177 37.500 15.98 0.29 39.07 3.67
1790 1898 6.822667 TCACATACGGACGTATATAACCAT 57.177 37.500 15.98 0.00 39.07 3.55
1791 1899 7.920160 TCACATACGGACGTATATAACCATA 57.080 36.000 15.98 0.00 39.07 2.74
1792 1900 8.510243 TCACATACGGACGTATATAACCATAT 57.490 34.615 15.98 0.00 39.07 1.78
1793 1901 8.959548 TCACATACGGACGTATATAACCATATT 58.040 33.333 15.98 0.00 39.07 1.28
1794 1902 9.577110 CACATACGGACGTATATAACCATATTT 57.423 33.333 15.98 0.00 39.07 1.40
1823 1931 8.206325 AGTGTAGATTCACTCATTTTGCTATG 57.794 34.615 0.00 0.00 44.07 2.23
1824 1932 7.826252 AGTGTAGATTCACTCATTTTGCTATGT 59.174 33.333 0.00 0.00 44.07 2.29
1825 1933 9.098355 GTGTAGATTCACTCATTTTGCTATGTA 57.902 33.333 0.00 0.00 35.68 2.29
1826 1934 9.836864 TGTAGATTCACTCATTTTGCTATGTAT 57.163 29.630 0.00 0.00 0.00 2.29
1835 1943 9.712305 ACTCATTTTGCTATGTATATAGTCACC 57.288 33.333 8.15 0.00 38.81 4.02
1836 1944 9.935241 CTCATTTTGCTATGTATATAGTCACCT 57.065 33.333 8.15 0.00 38.81 4.00
1837 1945 9.710900 TCATTTTGCTATGTATATAGTCACCTG 57.289 33.333 8.15 2.60 38.81 4.00
1838 1946 9.494271 CATTTTGCTATGTATATAGTCACCTGT 57.506 33.333 8.15 0.00 38.81 4.00
1840 1948 8.887036 TTTGCTATGTATATAGTCACCTGTTG 57.113 34.615 8.15 0.00 38.81 3.33
1841 1949 7.833285 TGCTATGTATATAGTCACCTGTTGA 57.167 36.000 8.15 0.00 38.81 3.18
1842 1950 8.245195 TGCTATGTATATAGTCACCTGTTGAA 57.755 34.615 8.15 0.00 38.81 2.69
1843 1951 8.700973 TGCTATGTATATAGTCACCTGTTGAAA 58.299 33.333 8.15 0.00 38.81 2.69
1844 1952 9.712305 GCTATGTATATAGTCACCTGTTGAAAT 57.288 33.333 8.15 0.00 38.81 2.17
1847 1955 9.988815 ATGTATATAGTCACCTGTTGAAATCTC 57.011 33.333 0.00 0.00 35.39 2.75
1848 1956 9.201989 TGTATATAGTCACCTGTTGAAATCTCT 57.798 33.333 0.00 0.00 35.39 3.10
1851 1959 7.962995 ATAGTCACCTGTTGAAATCTCTAGA 57.037 36.000 0.00 0.00 35.39 2.43
1852 1960 6.672266 AGTCACCTGTTGAAATCTCTAGAA 57.328 37.500 0.00 0.00 35.39 2.10
1853 1961 7.067496 AGTCACCTGTTGAAATCTCTAGAAA 57.933 36.000 0.00 0.00 35.39 2.52
1854 1962 7.158021 AGTCACCTGTTGAAATCTCTAGAAAG 58.842 38.462 0.00 0.00 35.39 2.62
1855 1963 7.015682 AGTCACCTGTTGAAATCTCTAGAAAGA 59.984 37.037 0.00 0.00 35.39 2.52
1856 1964 7.117092 GTCACCTGTTGAAATCTCTAGAAAGAC 59.883 40.741 0.00 0.00 35.39 3.01
1857 1965 6.931281 CACCTGTTGAAATCTCTAGAAAGACA 59.069 38.462 0.00 0.00 0.00 3.41
1858 1966 7.442364 CACCTGTTGAAATCTCTAGAAAGACAA 59.558 37.037 0.00 0.00 0.00 3.18
1859 1967 7.993183 ACCTGTTGAAATCTCTAGAAAGACAAA 59.007 33.333 0.00 0.00 0.00 2.83
1860 1968 9.007901 CCTGTTGAAATCTCTAGAAAGACAAAT 57.992 33.333 0.00 0.00 0.00 2.32
1875 1983 9.908152 AGAAAGACAAATATTTAAAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
1876 1984 9.902196 GAAAGACAAATATTTAAAAACGGAGGA 57.098 29.630 0.00 0.00 0.00 3.71
1878 1986 9.908152 AAGACAAATATTTAAAAACGGAGGAAG 57.092 29.630 0.00 0.00 0.00 3.46
1879 1987 9.074576 AGACAAATATTTAAAAACGGAGGAAGT 57.925 29.630 0.00 0.00 0.00 3.01
2016 2129 3.586470 TTTCTAAGTGGCTTTGGTGGA 57.414 42.857 0.00 0.00 0.00 4.02
2026 2139 2.229784 GGCTTTGGTGGAGAAGTTGATG 59.770 50.000 0.00 0.00 0.00 3.07
2174 2289 4.141937 CCTCAGAATTGTCGTATCAAGGGA 60.142 45.833 0.00 0.00 0.00 4.20
2175 2290 5.453903 CCTCAGAATTGTCGTATCAAGGGAT 60.454 44.000 0.00 0.00 37.55 3.85
2176 2291 6.239317 CCTCAGAATTGTCGTATCAAGGGATA 60.239 42.308 0.00 0.00 34.89 2.59
2177 2292 6.749139 TCAGAATTGTCGTATCAAGGGATAG 58.251 40.000 0.00 0.00 36.69 2.08
2208 2324 6.696441 AGACTTAACATCCTACTTCGGTAG 57.304 41.667 0.00 0.00 45.42 3.18
2223 2339 2.617308 TCGGTAGTGCTAGCATAGACAC 59.383 50.000 22.51 13.52 42.77 3.67
2224 2340 2.357952 CGGTAGTGCTAGCATAGACACA 59.642 50.000 22.51 0.00 42.77 3.72
2225 2341 3.549019 CGGTAGTGCTAGCATAGACACAG 60.549 52.174 22.51 10.98 42.77 3.66
2226 2342 3.243569 GGTAGTGCTAGCATAGACACAGG 60.244 52.174 22.51 0.00 42.77 4.00
2227 2343 1.137872 AGTGCTAGCATAGACACAGGC 59.862 52.381 22.51 3.45 42.77 4.85
2228 2344 1.137872 GTGCTAGCATAGACACAGGCT 59.862 52.381 22.51 0.00 42.77 4.58
2229 2345 2.362397 GTGCTAGCATAGACACAGGCTA 59.638 50.000 22.51 0.00 42.77 3.93
2230 2346 3.031013 TGCTAGCATAGACACAGGCTAA 58.969 45.455 14.93 0.00 42.77 3.09
2231 2347 3.181475 TGCTAGCATAGACACAGGCTAAC 60.181 47.826 14.93 0.00 42.77 2.34
2232 2348 3.181475 GCTAGCATAGACACAGGCTAACA 60.181 47.826 10.63 0.00 42.77 2.41
2233 2349 3.981071 AGCATAGACACAGGCTAACAA 57.019 42.857 0.00 0.00 34.25 2.83
2234 2350 3.600388 AGCATAGACACAGGCTAACAAC 58.400 45.455 0.00 0.00 34.25 3.32
2235 2351 2.678336 GCATAGACACAGGCTAACAACC 59.322 50.000 0.00 0.00 0.00 3.77
2236 2352 3.270877 CATAGACACAGGCTAACAACCC 58.729 50.000 0.00 0.00 0.00 4.11
2237 2353 0.400594 AGACACAGGCTAACAACCCC 59.599 55.000 0.00 0.00 0.00 4.95
2238 2354 0.608308 GACACAGGCTAACAACCCCC 60.608 60.000 0.00 0.00 0.00 5.40
2239 2355 1.674322 CACAGGCTAACAACCCCCG 60.674 63.158 0.00 0.00 0.00 5.73
2240 2356 2.750237 CAGGCTAACAACCCCCGC 60.750 66.667 0.00 0.00 0.00 6.13
2241 2357 4.043100 AGGCTAACAACCCCCGCC 62.043 66.667 0.00 0.00 0.00 6.13
2244 2360 4.435970 CTAACAACCCCCGCCCCC 62.436 72.222 0.00 0.00 0.00 5.40
2246 2362 3.576078 TAACAACCCCCGCCCCCTA 62.576 63.158 0.00 0.00 0.00 3.53
2248 2364 4.123545 CAACCCCCGCCCCCTAAG 62.124 72.222 0.00 0.00 0.00 2.18
2249 2365 4.358181 AACCCCCGCCCCCTAAGA 62.358 66.667 0.00 0.00 0.00 2.10
2253 2369 3.846430 CCCGCCCCCTAAGACGAC 61.846 72.222 0.00 0.00 0.00 4.34
2254 2370 3.072468 CCGCCCCCTAAGACGACA 61.072 66.667 0.00 0.00 0.00 4.35
2255 2371 2.652095 CCGCCCCCTAAGACGACAA 61.652 63.158 0.00 0.00 0.00 3.18
2256 2372 1.294138 CGCCCCCTAAGACGACAAA 59.706 57.895 0.00 0.00 0.00 2.83
2257 2373 0.739813 CGCCCCCTAAGACGACAAAG 60.740 60.000 0.00 0.00 0.00 2.77
2258 2374 0.323957 GCCCCCTAAGACGACAAAGT 59.676 55.000 0.00 0.00 0.00 2.66
2259 2375 1.675116 GCCCCCTAAGACGACAAAGTC 60.675 57.143 0.00 0.00 41.23 3.01
2260 2376 1.621814 CCCCCTAAGACGACAAAGTCA 59.378 52.381 0.00 0.00 43.24 3.41
2261 2377 2.353803 CCCCCTAAGACGACAAAGTCAG 60.354 54.545 0.00 0.00 43.24 3.51
2262 2378 2.561419 CCCCTAAGACGACAAAGTCAGA 59.439 50.000 0.00 0.00 43.24 3.27
2263 2379 3.195825 CCCCTAAGACGACAAAGTCAGAT 59.804 47.826 0.00 0.00 43.24 2.90
2264 2380 4.177026 CCCTAAGACGACAAAGTCAGATG 58.823 47.826 0.00 0.00 43.24 2.90
2265 2381 4.177026 CCTAAGACGACAAAGTCAGATGG 58.823 47.826 0.00 0.00 43.24 3.51
2266 2382 2.751166 AGACGACAAAGTCAGATGGG 57.249 50.000 0.00 0.00 43.24 4.00
2267 2383 1.276421 AGACGACAAAGTCAGATGGGG 59.724 52.381 0.00 0.00 43.24 4.96
2268 2384 0.321653 ACGACAAAGTCAGATGGGGC 60.322 55.000 0.00 0.00 32.09 5.80
2269 2385 1.361668 CGACAAAGTCAGATGGGGCG 61.362 60.000 0.00 0.00 32.09 6.13
2270 2386 1.002134 ACAAAGTCAGATGGGGCGG 60.002 57.895 0.00 0.00 0.00 6.13
2271 2387 1.750399 CAAAGTCAGATGGGGCGGG 60.750 63.158 0.00 0.00 0.00 6.13
2272 2388 2.983879 AAAGTCAGATGGGGCGGGG 61.984 63.158 0.00 0.00 0.00 5.73
2289 2405 3.090532 GCGGGGGACTCCTGGATT 61.091 66.667 1.31 0.00 42.30 3.01
2290 2406 1.764854 GCGGGGGACTCCTGGATTA 60.765 63.158 1.31 0.00 42.30 1.75
2291 2407 1.128188 GCGGGGGACTCCTGGATTAT 61.128 60.000 1.31 0.00 42.30 1.28
2292 2408 0.687354 CGGGGGACTCCTGGATTATG 59.313 60.000 0.00 0.00 38.27 1.90
2293 2409 0.402121 GGGGGACTCCTGGATTATGC 59.598 60.000 0.00 0.00 35.33 3.14
2294 2410 0.402121 GGGGACTCCTGGATTATGCC 59.598 60.000 0.00 0.62 0.00 4.40
2295 2411 0.035458 GGGACTCCTGGATTATGCCG 59.965 60.000 0.00 0.00 0.00 5.69
2296 2412 0.603975 GGACTCCTGGATTATGCCGC 60.604 60.000 0.00 0.00 0.00 6.53
2297 2413 0.603975 GACTCCTGGATTATGCCGCC 60.604 60.000 0.00 0.00 0.00 6.13
2298 2414 1.344953 ACTCCTGGATTATGCCGCCA 61.345 55.000 0.00 0.00 0.00 5.69
2299 2415 0.604780 CTCCTGGATTATGCCGCCAG 60.605 60.000 0.00 0.00 46.83 4.85
2300 2416 2.263741 CCTGGATTATGCCGCCAGC 61.264 63.158 0.00 0.00 46.11 4.85
2301 2417 2.203337 TGGATTATGCCGCCAGCC 60.203 61.111 0.00 0.00 42.71 4.85
2302 2418 2.203337 GGATTATGCCGCCAGCCA 60.203 61.111 0.00 0.00 42.71 4.75
2303 2419 2.555547 GGATTATGCCGCCAGCCAC 61.556 63.158 0.00 0.00 42.71 5.01
2304 2420 1.823470 GATTATGCCGCCAGCCACA 60.823 57.895 0.00 0.00 42.71 4.17
2305 2421 1.152694 ATTATGCCGCCAGCCACAT 60.153 52.632 0.00 0.00 42.71 3.21
2306 2422 0.756442 ATTATGCCGCCAGCCACATT 60.756 50.000 0.00 0.00 42.71 2.71
2307 2423 1.665264 TTATGCCGCCAGCCACATTG 61.665 55.000 0.00 0.00 42.71 2.82
2308 2424 2.549169 TATGCCGCCAGCCACATTGA 62.549 55.000 0.00 0.00 42.71 2.57
2309 2425 3.818787 GCCGCCAGCCACATTGAG 61.819 66.667 0.00 0.00 34.35 3.02
2310 2426 2.360350 CCGCCAGCCACATTGAGT 60.360 61.111 0.00 0.00 0.00 3.41
2311 2427 1.078497 CCGCCAGCCACATTGAGTA 60.078 57.895 0.00 0.00 0.00 2.59
2312 2428 0.676466 CCGCCAGCCACATTGAGTAA 60.676 55.000 0.00 0.00 0.00 2.24
2313 2429 1.164411 CGCCAGCCACATTGAGTAAA 58.836 50.000 0.00 0.00 0.00 2.01
2314 2430 1.539388 CGCCAGCCACATTGAGTAAAA 59.461 47.619 0.00 0.00 0.00 1.52
2315 2431 2.164219 CGCCAGCCACATTGAGTAAAAT 59.836 45.455 0.00 0.00 0.00 1.82
2316 2432 3.731867 CGCCAGCCACATTGAGTAAAATC 60.732 47.826 0.00 0.00 0.00 2.17
2317 2433 3.731867 GCCAGCCACATTGAGTAAAATCG 60.732 47.826 0.00 0.00 0.00 3.34
2318 2434 3.440173 CCAGCCACATTGAGTAAAATCGT 59.560 43.478 0.00 0.00 0.00 3.73
2319 2435 4.437390 CCAGCCACATTGAGTAAAATCGTC 60.437 45.833 0.00 0.00 0.00 4.20
2320 2436 4.154015 CAGCCACATTGAGTAAAATCGTCA 59.846 41.667 0.00 0.00 0.00 4.35
2321 2437 4.154195 AGCCACATTGAGTAAAATCGTCAC 59.846 41.667 0.00 0.00 0.00 3.67
2322 2438 4.671766 GCCACATTGAGTAAAATCGTCACC 60.672 45.833 0.00 0.00 0.00 4.02
2323 2439 4.435518 CCACATTGAGTAAAATCGTCACCG 60.436 45.833 0.00 0.00 0.00 4.94
2324 2440 3.682858 ACATTGAGTAAAATCGTCACCGG 59.317 43.478 0.00 0.00 33.95 5.28
2325 2441 3.389925 TTGAGTAAAATCGTCACCGGT 57.610 42.857 0.00 0.00 33.95 5.28
2326 2442 2.950433 TGAGTAAAATCGTCACCGGTC 58.050 47.619 2.59 0.00 33.95 4.79
2327 2443 2.559668 TGAGTAAAATCGTCACCGGTCT 59.440 45.455 2.59 0.00 33.95 3.85
2328 2444 3.006110 TGAGTAAAATCGTCACCGGTCTT 59.994 43.478 2.59 0.00 33.95 3.01
2329 2445 3.582780 AGTAAAATCGTCACCGGTCTTC 58.417 45.455 2.59 0.00 33.95 2.87
2330 2446 2.833631 AAAATCGTCACCGGTCTTCT 57.166 45.000 2.59 0.00 33.95 2.85
2331 2447 3.947910 AAAATCGTCACCGGTCTTCTA 57.052 42.857 2.59 0.00 33.95 2.10
2332 2448 2.935481 AATCGTCACCGGTCTTCTAC 57.065 50.000 2.59 0.00 33.95 2.59
2333 2449 2.125773 ATCGTCACCGGTCTTCTACT 57.874 50.000 2.59 0.00 33.95 2.57
2334 2450 1.446907 TCGTCACCGGTCTTCTACTC 58.553 55.000 2.59 0.00 33.95 2.59
2335 2451 1.162698 CGTCACCGGTCTTCTACTCA 58.837 55.000 2.59 0.00 0.00 3.41
2336 2452 1.538512 CGTCACCGGTCTTCTACTCAA 59.461 52.381 2.59 0.00 0.00 3.02
2337 2453 2.667724 CGTCACCGGTCTTCTACTCAAC 60.668 54.545 2.59 0.00 0.00 3.18
2338 2454 1.891150 TCACCGGTCTTCTACTCAACC 59.109 52.381 2.59 0.00 0.00 3.77
2339 2455 1.893801 CACCGGTCTTCTACTCAACCT 59.106 52.381 2.59 0.00 0.00 3.50
2340 2456 1.893801 ACCGGTCTTCTACTCAACCTG 59.106 52.381 0.00 0.00 0.00 4.00
2341 2457 1.404315 CCGGTCTTCTACTCAACCTGC 60.404 57.143 0.00 0.00 0.00 4.85
2342 2458 1.272490 CGGTCTTCTACTCAACCTGCA 59.728 52.381 0.00 0.00 0.00 4.41
2343 2459 2.093973 CGGTCTTCTACTCAACCTGCAT 60.094 50.000 0.00 0.00 0.00 3.96
2344 2460 3.130516 CGGTCTTCTACTCAACCTGCATA 59.869 47.826 0.00 0.00 0.00 3.14
2345 2461 4.434520 GGTCTTCTACTCAACCTGCATAC 58.565 47.826 0.00 0.00 0.00 2.39
2346 2462 4.081642 GGTCTTCTACTCAACCTGCATACA 60.082 45.833 0.00 0.00 0.00 2.29
2347 2463 5.395768 GGTCTTCTACTCAACCTGCATACAT 60.396 44.000 0.00 0.00 0.00 2.29
2348 2464 5.521735 GTCTTCTACTCAACCTGCATACATG 59.478 44.000 0.00 0.00 0.00 3.21
2365 2481 7.734924 CATACATGCCAACATCTATAGTTGT 57.265 36.000 10.14 10.14 43.61 3.32
2366 2482 7.800767 CATACATGCCAACATCTATAGTTGTC 58.199 38.462 15.21 5.77 43.61 3.18
2367 2483 4.811024 ACATGCCAACATCTATAGTTGTCG 59.189 41.667 15.21 6.01 43.61 4.35
2368 2484 3.792401 TGCCAACATCTATAGTTGTCGG 58.208 45.455 14.30 14.30 43.61 4.79
2369 2485 3.196901 TGCCAACATCTATAGTTGTCGGT 59.803 43.478 18.12 2.79 43.61 4.69
2370 2486 3.555956 GCCAACATCTATAGTTGTCGGTG 59.444 47.826 18.12 12.41 43.61 4.94
2371 2487 3.555956 CCAACATCTATAGTTGTCGGTGC 59.444 47.826 15.21 0.00 43.61 5.01
2372 2488 4.433615 CAACATCTATAGTTGTCGGTGCT 58.566 43.478 15.21 0.00 41.00 4.40
2373 2489 4.308899 ACATCTATAGTTGTCGGTGCTC 57.691 45.455 10.14 0.00 0.00 4.26
2374 2490 3.699538 ACATCTATAGTTGTCGGTGCTCA 59.300 43.478 10.14 0.00 0.00 4.26
2375 2491 4.202060 ACATCTATAGTTGTCGGTGCTCAG 60.202 45.833 10.14 0.00 0.00 3.35
2376 2492 3.353557 TCTATAGTTGTCGGTGCTCAGT 58.646 45.455 0.00 0.00 0.00 3.41
2377 2493 2.656560 ATAGTTGTCGGTGCTCAGTC 57.343 50.000 0.00 0.00 0.00 3.51
2378 2494 0.240145 TAGTTGTCGGTGCTCAGTCG 59.760 55.000 0.00 0.00 0.00 4.18
2379 2495 1.299926 GTTGTCGGTGCTCAGTCGT 60.300 57.895 0.00 0.00 0.00 4.34
2380 2496 0.039798 GTTGTCGGTGCTCAGTCGTA 60.040 55.000 0.00 0.00 0.00 3.43
2381 2497 0.240145 TTGTCGGTGCTCAGTCGTAG 59.760 55.000 0.00 0.00 0.00 3.51
2382 2498 0.887836 TGTCGGTGCTCAGTCGTAGT 60.888 55.000 0.00 0.00 0.00 2.73
2383 2499 1.081892 GTCGGTGCTCAGTCGTAGTA 58.918 55.000 0.00 0.00 0.00 1.82
2384 2500 1.062294 GTCGGTGCTCAGTCGTAGTAG 59.938 57.143 0.00 0.00 0.00 2.57
2385 2501 1.066645 TCGGTGCTCAGTCGTAGTAGA 60.067 52.381 0.00 0.00 0.00 2.59
2386 2502 1.736126 CGGTGCTCAGTCGTAGTAGAA 59.264 52.381 0.00 0.00 0.00 2.10
2387 2503 2.355132 CGGTGCTCAGTCGTAGTAGAAT 59.645 50.000 0.00 0.00 0.00 2.40
2388 2504 3.696898 GGTGCTCAGTCGTAGTAGAATG 58.303 50.000 0.00 0.00 37.54 2.67
2389 2505 3.377485 GGTGCTCAGTCGTAGTAGAATGA 59.623 47.826 0.00 0.00 42.02 2.57
2390 2506 4.142447 GGTGCTCAGTCGTAGTAGAATGAA 60.142 45.833 0.00 0.00 43.32 2.57
2391 2507 5.450688 GGTGCTCAGTCGTAGTAGAATGAAT 60.451 44.000 0.00 0.00 43.32 2.57
2392 2508 6.238676 GGTGCTCAGTCGTAGTAGAATGAATA 60.239 42.308 0.00 0.00 43.32 1.75
2393 2509 7.364200 GTGCTCAGTCGTAGTAGAATGAATAT 58.636 38.462 0.00 0.00 43.32 1.28
2394 2510 8.504815 GTGCTCAGTCGTAGTAGAATGAATATA 58.495 37.037 0.00 0.00 43.32 0.86
2395 2511 9.063615 TGCTCAGTCGTAGTAGAATGAATATAA 57.936 33.333 0.00 0.00 43.32 0.98
2396 2512 9.894783 GCTCAGTCGTAGTAGAATGAATATAAA 57.105 33.333 0.00 0.00 43.32 1.40
2401 2517 9.367444 GTCGTAGTAGAATGAATATAAATGGGG 57.633 37.037 0.00 0.00 0.00 4.96
2402 2518 8.038944 TCGTAGTAGAATGAATATAAATGGGGC 58.961 37.037 0.00 0.00 0.00 5.80
2403 2519 8.041323 CGTAGTAGAATGAATATAAATGGGGCT 58.959 37.037 0.00 0.00 0.00 5.19
2404 2520 9.167311 GTAGTAGAATGAATATAAATGGGGCTG 57.833 37.037 0.00 0.00 0.00 4.85
2405 2521 7.759607 AGTAGAATGAATATAAATGGGGCTGT 58.240 34.615 0.00 0.00 0.00 4.40
2406 2522 8.227507 AGTAGAATGAATATAAATGGGGCTGTT 58.772 33.333 0.00 0.00 0.00 3.16
2407 2523 7.294017 AGAATGAATATAAATGGGGCTGTTG 57.706 36.000 0.00 0.00 0.00 3.33
2408 2524 7.068702 AGAATGAATATAAATGGGGCTGTTGA 58.931 34.615 0.00 0.00 0.00 3.18
2409 2525 6.906157 ATGAATATAAATGGGGCTGTTGAG 57.094 37.500 0.00 0.00 0.00 3.02
2410 2526 5.765510 TGAATATAAATGGGGCTGTTGAGT 58.234 37.500 0.00 0.00 0.00 3.41
2411 2527 6.905736 TGAATATAAATGGGGCTGTTGAGTA 58.094 36.000 0.00 0.00 0.00 2.59
2412 2528 7.526041 TGAATATAAATGGGGCTGTTGAGTAT 58.474 34.615 0.00 0.00 0.00 2.12
2413 2529 7.448161 TGAATATAAATGGGGCTGTTGAGTATG 59.552 37.037 0.00 0.00 0.00 2.39
2414 2530 3.456380 AAATGGGGCTGTTGAGTATGT 57.544 42.857 0.00 0.00 0.00 2.29
2415 2531 4.584638 AAATGGGGCTGTTGAGTATGTA 57.415 40.909 0.00 0.00 0.00 2.29
2416 2532 4.796110 AATGGGGCTGTTGAGTATGTAT 57.204 40.909 0.00 0.00 0.00 2.29
2417 2533 4.796110 ATGGGGCTGTTGAGTATGTATT 57.204 40.909 0.00 0.00 0.00 1.89
2418 2534 4.584638 TGGGGCTGTTGAGTATGTATTT 57.415 40.909 0.00 0.00 0.00 1.40
2419 2535 4.929479 TGGGGCTGTTGAGTATGTATTTT 58.071 39.130 0.00 0.00 0.00 1.82
2420 2536 6.068461 TGGGGCTGTTGAGTATGTATTTTA 57.932 37.500 0.00 0.00 0.00 1.52
2421 2537 6.668645 TGGGGCTGTTGAGTATGTATTTTAT 58.331 36.000 0.00 0.00 0.00 1.40
2422 2538 7.807198 TGGGGCTGTTGAGTATGTATTTTATA 58.193 34.615 0.00 0.00 0.00 0.98
2423 2539 7.717875 TGGGGCTGTTGAGTATGTATTTTATAC 59.282 37.037 0.00 0.00 0.00 1.47
2424 2540 7.937394 GGGGCTGTTGAGTATGTATTTTATACT 59.063 37.037 0.00 0.00 42.43 2.12
2425 2541 8.774586 GGGCTGTTGAGTATGTATTTTATACTG 58.225 37.037 2.67 0.00 40.46 2.74
2426 2542 8.283291 GGCTGTTGAGTATGTATTTTATACTGC 58.717 37.037 2.67 0.00 40.46 4.40
2427 2543 8.826710 GCTGTTGAGTATGTATTTTATACTGCA 58.173 33.333 2.67 0.00 40.46 4.41
2429 2545 8.813282 TGTTGAGTATGTATTTTATACTGCACG 58.187 33.333 2.67 0.00 40.46 5.34
2430 2546 8.814235 GTTGAGTATGTATTTTATACTGCACGT 58.186 33.333 2.67 0.00 40.46 4.49
2431 2547 8.347729 TGAGTATGTATTTTATACTGCACGTG 57.652 34.615 12.28 12.28 40.46 4.49
2432 2548 7.977293 TGAGTATGTATTTTATACTGCACGTGT 59.023 33.333 18.38 0.00 40.46 4.49
2433 2549 9.454585 GAGTATGTATTTTATACTGCACGTGTA 57.545 33.333 18.38 12.42 40.46 2.90
2434 2550 9.976511 AGTATGTATTTTATACTGCACGTGTAT 57.023 29.630 18.38 9.73 39.28 2.29
2437 2553 7.911343 TGTATTTTATACTGCACGTGTATTGG 58.089 34.615 18.38 3.48 33.32 3.16
2438 2554 7.764901 TGTATTTTATACTGCACGTGTATTGGA 59.235 33.333 18.38 0.00 33.32 3.53
2439 2555 6.656314 TTTTATACTGCACGTGTATTGGAG 57.344 37.500 18.38 3.50 38.33 3.86
2440 2556 3.887621 ATACTGCACGTGTATTGGAGT 57.112 42.857 18.38 9.81 46.26 3.85
2441 2557 2.543777 ACTGCACGTGTATTGGAGTT 57.456 45.000 18.38 0.00 42.43 3.01
2442 2558 3.671008 ACTGCACGTGTATTGGAGTTA 57.329 42.857 18.38 0.00 42.43 2.24
2443 2559 4.202245 ACTGCACGTGTATTGGAGTTAT 57.798 40.909 18.38 0.00 42.43 1.89
2444 2560 3.932710 ACTGCACGTGTATTGGAGTTATG 59.067 43.478 18.38 0.00 42.43 1.90
2445 2561 3.266636 TGCACGTGTATTGGAGTTATGG 58.733 45.455 18.38 0.00 0.00 2.74
2446 2562 3.267483 GCACGTGTATTGGAGTTATGGT 58.733 45.455 18.38 0.00 0.00 3.55
2447 2563 4.081586 TGCACGTGTATTGGAGTTATGGTA 60.082 41.667 18.38 0.00 0.00 3.25
2448 2564 4.269363 GCACGTGTATTGGAGTTATGGTAC 59.731 45.833 18.38 0.00 0.00 3.34
2463 2579 3.537795 TGGTACACCTCCTAGTCTTGT 57.462 47.619 0.00 0.00 36.82 3.16
2464 2580 4.662966 TGGTACACCTCCTAGTCTTGTA 57.337 45.455 0.00 0.00 36.82 2.41
2465 2581 5.202746 TGGTACACCTCCTAGTCTTGTAT 57.797 43.478 0.00 0.00 36.82 2.29
2466 2582 6.331577 TGGTACACCTCCTAGTCTTGTATA 57.668 41.667 0.00 0.00 36.82 1.47
2467 2583 6.363065 TGGTACACCTCCTAGTCTTGTATAG 58.637 44.000 0.00 0.00 36.82 1.31
2468 2584 6.069206 TGGTACACCTCCTAGTCTTGTATAGT 60.069 42.308 0.00 0.00 36.82 2.12
2469 2585 6.832900 GGTACACCTCCTAGTCTTGTATAGTT 59.167 42.308 0.00 0.00 0.00 2.24
2470 2586 6.777213 ACACCTCCTAGTCTTGTATAGTTG 57.223 41.667 0.00 0.00 0.00 3.16
2471 2587 6.491383 ACACCTCCTAGTCTTGTATAGTTGA 58.509 40.000 0.00 0.00 0.00 3.18
2472 2588 6.603997 ACACCTCCTAGTCTTGTATAGTTGAG 59.396 42.308 0.00 0.00 0.00 3.02
2473 2589 6.829298 CACCTCCTAGTCTTGTATAGTTGAGA 59.171 42.308 0.00 0.00 0.00 3.27
2474 2590 7.504238 CACCTCCTAGTCTTGTATAGTTGAGAT 59.496 40.741 0.00 0.00 0.00 2.75
2475 2591 8.725256 ACCTCCTAGTCTTGTATAGTTGAGATA 58.275 37.037 0.00 0.00 0.00 1.98
2476 2592 9.226606 CCTCCTAGTCTTGTATAGTTGAGATAG 57.773 40.741 0.00 0.00 0.00 2.08
2479 2595 9.226606 CCTAGTCTTGTATAGTTGAGATAGAGG 57.773 40.741 0.00 0.00 0.00 3.69
2480 2596 9.787435 CTAGTCTTGTATAGTTGAGATAGAGGT 57.213 37.037 0.00 0.00 0.00 3.85
2481 2597 8.685838 AGTCTTGTATAGTTGAGATAGAGGTC 57.314 38.462 0.00 0.00 0.00 3.85
2482 2598 8.499406 AGTCTTGTATAGTTGAGATAGAGGTCT 58.501 37.037 0.00 0.00 0.00 3.85
2483 2599 9.127277 GTCTTGTATAGTTGAGATAGAGGTCTT 57.873 37.037 0.00 0.00 0.00 3.01
2484 2600 9.344772 TCTTGTATAGTTGAGATAGAGGTCTTC 57.655 37.037 0.00 0.00 0.00 2.87
2485 2601 8.466617 TTGTATAGTTGAGATAGAGGTCTTCC 57.533 38.462 0.00 0.00 0.00 3.46
2486 2602 7.005296 TGTATAGTTGAGATAGAGGTCTTCCC 58.995 42.308 0.00 0.00 0.00 3.97
2488 2604 4.954089 AGTTGAGATAGAGGTCTTCCCTT 58.046 43.478 0.00 0.00 46.51 3.95
2489 2605 4.714308 AGTTGAGATAGAGGTCTTCCCTTG 59.286 45.833 0.00 0.00 46.51 3.61
2490 2606 4.338795 TGAGATAGAGGTCTTCCCTTGT 57.661 45.455 0.00 0.00 46.51 3.16
2491 2607 5.467668 TGAGATAGAGGTCTTCCCTTGTA 57.532 43.478 0.00 0.00 46.51 2.41
2492 2608 6.031964 TGAGATAGAGGTCTTCCCTTGTAT 57.968 41.667 0.00 0.00 46.51 2.29
2493 2609 6.444704 TGAGATAGAGGTCTTCCCTTGTATT 58.555 40.000 0.00 0.00 46.51 1.89
2494 2610 7.592736 TGAGATAGAGGTCTTCCCTTGTATTA 58.407 38.462 0.00 0.00 46.51 0.98
2495 2611 8.235230 TGAGATAGAGGTCTTCCCTTGTATTAT 58.765 37.037 0.00 0.00 46.51 1.28
2496 2612 9.756571 GAGATAGAGGTCTTCCCTTGTATTATA 57.243 37.037 0.00 0.00 46.51 0.98
2501 2617 8.763601 AGAGGTCTTCCCTTGTATTATATATGC 58.236 37.037 0.00 0.00 46.51 3.14
2502 2618 7.556844 AGGTCTTCCCTTGTATTATATATGCG 58.443 38.462 0.00 0.00 42.73 4.73
2503 2619 7.180408 AGGTCTTCCCTTGTATTATATATGCGT 59.820 37.037 0.00 0.00 42.73 5.24
2504 2620 7.277981 GGTCTTCCCTTGTATTATATATGCGTG 59.722 40.741 0.00 0.00 0.00 5.34
2505 2621 6.816640 TCTTCCCTTGTATTATATATGCGTGC 59.183 38.462 0.00 0.00 0.00 5.34
2506 2622 6.043854 TCCCTTGTATTATATATGCGTGCA 57.956 37.500 0.00 0.00 0.00 4.57
2507 2623 5.872617 TCCCTTGTATTATATATGCGTGCAC 59.127 40.000 6.82 6.82 0.00 4.57
2508 2624 5.064707 CCCTTGTATTATATATGCGTGCACC 59.935 44.000 12.15 4.74 0.00 5.01
2509 2625 5.641636 CCTTGTATTATATATGCGTGCACCA 59.358 40.000 12.15 10.86 0.00 4.17
2510 2626 6.183360 CCTTGTATTATATATGCGTGCACCAG 60.183 42.308 12.15 0.00 0.00 4.00
2511 2627 4.629634 TGTATTATATATGCGTGCACCAGC 59.370 41.667 12.15 10.66 42.57 4.85
2521 2637 3.776158 GCACCAGCACCCAAATCA 58.224 55.556 0.00 0.00 41.58 2.57
2522 2638 2.048601 GCACCAGCACCCAAATCAA 58.951 52.632 0.00 0.00 41.58 2.57
2523 2639 0.392336 GCACCAGCACCCAAATCAAA 59.608 50.000 0.00 0.00 41.58 2.69
2524 2640 1.606224 GCACCAGCACCCAAATCAAAG 60.606 52.381 0.00 0.00 41.58 2.77
2525 2641 0.681175 ACCAGCACCCAAATCAAAGC 59.319 50.000 0.00 0.00 0.00 3.51
2526 2642 0.680618 CCAGCACCCAAATCAAAGCA 59.319 50.000 0.00 0.00 0.00 3.91
2527 2643 1.070445 CCAGCACCCAAATCAAAGCAA 59.930 47.619 0.00 0.00 0.00 3.91
2528 2644 2.289819 CCAGCACCCAAATCAAAGCAAT 60.290 45.455 0.00 0.00 0.00 3.56
2529 2645 2.739913 CAGCACCCAAATCAAAGCAATG 59.260 45.455 0.00 0.00 0.00 2.82
2530 2646 2.633967 AGCACCCAAATCAAAGCAATGA 59.366 40.909 0.00 0.00 0.00 2.57
2531 2647 2.997986 GCACCCAAATCAAAGCAATGAG 59.002 45.455 0.00 0.00 31.76 2.90
2532 2648 3.555586 GCACCCAAATCAAAGCAATGAGT 60.556 43.478 0.00 0.00 31.76 3.41
2533 2649 4.321899 GCACCCAAATCAAAGCAATGAGTA 60.322 41.667 0.00 0.00 31.76 2.59
2534 2650 5.625197 GCACCCAAATCAAAGCAATGAGTAT 60.625 40.000 0.00 0.00 31.76 2.12
2535 2651 6.400568 CACCCAAATCAAAGCAATGAGTATT 58.599 36.000 0.00 0.00 31.76 1.89
2536 2652 6.311935 CACCCAAATCAAAGCAATGAGTATTG 59.688 38.462 0.00 0.00 45.17 1.90
2537 2653 6.014327 ACCCAAATCAAAGCAATGAGTATTGT 60.014 34.615 0.00 0.00 44.41 2.71
2538 2654 7.178274 ACCCAAATCAAAGCAATGAGTATTGTA 59.822 33.333 0.00 0.00 44.41 2.41
2539 2655 8.199449 CCCAAATCAAAGCAATGAGTATTGTAT 58.801 33.333 0.00 0.00 44.41 2.29
2540 2656 9.590451 CCAAATCAAAGCAATGAGTATTGTATT 57.410 29.630 0.00 0.00 44.41 1.89
2551 2667 9.577110 CAATGAGTATTGTATTGCAAAACATCT 57.423 29.630 1.71 0.00 40.91 2.90
2552 2668 9.793252 AATGAGTATTGTATTGCAAAACATCTC 57.207 29.630 1.71 6.82 40.91 2.75
2553 2669 8.565896 TGAGTATTGTATTGCAAAACATCTCT 57.434 30.769 1.71 0.00 40.91 3.10
2554 2670 8.668353 TGAGTATTGTATTGCAAAACATCTCTC 58.332 33.333 1.71 8.17 40.91 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 112 2.789917 CGTGCAAGCAGAGATGCC 59.210 61.111 0.00 0.00 41.87 4.40
252 275 1.004292 CGGTCGACGCTTTCACTTTTT 60.004 47.619 9.92 0.00 34.82 1.94
253 276 0.580104 CGGTCGACGCTTTCACTTTT 59.420 50.000 9.92 0.00 34.82 2.27
286 309 0.942252 GTCTCCACGGCGTTTTCTTT 59.058 50.000 11.19 0.00 0.00 2.52
298 321 1.505353 CACTACGGTCGGTCTCCAC 59.495 63.158 0.00 0.00 0.00 4.02
394 422 5.180117 CGATCATCCATTTACATGTCCTTCC 59.820 44.000 0.00 0.00 0.00 3.46
422 465 0.027716 TCGTAGATCGACGCTGAAGC 59.972 55.000 21.71 0.00 44.01 3.86
432 475 2.109463 CAACCGTGTGATCGTAGATCG 58.891 52.381 5.68 0.00 45.12 3.69
433 476 3.416119 TCAACCGTGTGATCGTAGATC 57.584 47.619 3.26 3.26 45.12 2.75
434 477 3.966154 GATCAACCGTGTGATCGTAGAT 58.034 45.455 9.14 0.00 43.27 1.98
479 522 1.338674 TGACGAACCATTTCCTGCGAT 60.339 47.619 0.00 0.00 0.00 4.58
481 524 0.165944 GTGACGAACCATTTCCTGCG 59.834 55.000 0.00 0.00 0.00 5.18
484 527 2.930826 ACAGTGACGAACCATTTCCT 57.069 45.000 0.00 0.00 0.00 3.36
564 648 1.596203 GCGAGCCATCATGCAGCTA 60.596 57.895 0.00 0.00 36.87 3.32
565 649 2.900838 GCGAGCCATCATGCAGCT 60.901 61.111 0.00 0.00 40.24 4.24
566 650 2.663630 CTTGCGAGCCATCATGCAGC 62.664 60.000 0.00 0.00 38.75 5.25
567 651 1.093496 TCTTGCGAGCCATCATGCAG 61.093 55.000 0.00 0.00 38.75 4.41
604 688 2.919856 ACAGACAGCAGCCTCGGT 60.920 61.111 0.00 0.00 0.00 4.69
605 689 2.125753 GACAGACAGCAGCCTCGG 60.126 66.667 0.00 0.00 0.00 4.63
612 696 4.007644 CCGGGCAGACAGACAGCA 62.008 66.667 0.00 0.00 32.56 4.41
630 714 3.544167 CTAGCCTGTCGATCCGCGG 62.544 68.421 22.12 22.12 41.33 6.46
674 758 2.036428 AATTCTACGTAGCGGCCCCC 62.036 60.000 18.00 0.00 0.00 5.40
675 759 0.179065 AAATTCTACGTAGCGGCCCC 60.179 55.000 18.00 0.00 0.00 5.80
822 915 1.610522 GGAAATTGGCTCCATGATCCG 59.389 52.381 0.00 0.00 32.77 4.18
840 933 1.352622 CCGGGAAAGGATCATGGGGA 61.353 60.000 0.00 0.00 0.00 4.81
846 940 4.263331 GGATTTATAGCCGGGAAAGGATCA 60.263 45.833 2.18 0.00 0.00 2.92
855 949 1.420138 AGTGGTGGATTTATAGCCGGG 59.580 52.381 2.18 0.00 30.32 5.73
875 969 2.225041 TGAACGGAAGGAAGAGAGAGGA 60.225 50.000 0.00 0.00 0.00 3.71
886 980 1.608283 GGGAGTCTTGTGAACGGAAGG 60.608 57.143 0.00 0.00 0.00 3.46
897 991 2.663196 GACGGGTGGGGAGTCTTG 59.337 66.667 0.00 0.00 0.00 3.02
908 1002 0.178900 AAGGGAAAGAGAGGACGGGT 60.179 55.000 0.00 0.00 0.00 5.28
909 1003 0.537653 GAAGGGAAAGAGAGGACGGG 59.462 60.000 0.00 0.00 0.00 5.28
910 1004 1.478916 GAGAAGGGAAAGAGAGGACGG 59.521 57.143 0.00 0.00 0.00 4.79
912 1006 2.235155 GTGGAGAAGGGAAAGAGAGGAC 59.765 54.545 0.00 0.00 0.00 3.85
914 1008 2.499693 GAGTGGAGAAGGGAAAGAGAGG 59.500 54.545 0.00 0.00 0.00 3.69
915 1009 2.499693 GGAGTGGAGAAGGGAAAGAGAG 59.500 54.545 0.00 0.00 0.00 3.20
924 1020 3.816523 GAGTATAGTCGGAGTGGAGAAGG 59.183 52.174 0.00 0.00 0.00 3.46
926 1022 4.080469 ACAGAGTATAGTCGGAGTGGAGAA 60.080 45.833 13.80 0.00 0.00 2.87
935 1031 7.932335 ACAGAGAAATAACAGAGTATAGTCGG 58.068 38.462 6.20 6.20 0.00 4.79
947 1043 7.468141 TGAGCTAGAAGACAGAGAAATAACA 57.532 36.000 0.00 0.00 0.00 2.41
948 1044 6.475402 GCTGAGCTAGAAGACAGAGAAATAAC 59.525 42.308 0.00 0.00 32.90 1.89
962 1067 1.464734 AGTACGCAGCTGAGCTAGAA 58.535 50.000 20.43 0.00 36.40 2.10
966 1071 0.888619 TTGTAGTACGCAGCTGAGCT 59.111 50.000 20.43 10.39 40.77 4.09
975 1080 2.839474 CTTGCTTTGCTTGTAGTACGC 58.161 47.619 0.00 0.00 0.00 4.42
981 1086 1.031235 TGCTGCTTGCTTTGCTTGTA 58.969 45.000 0.00 0.00 43.37 2.41
983 1088 0.790207 CATGCTGCTTGCTTTGCTTG 59.210 50.000 0.00 1.84 43.37 4.01
1011 1116 1.490490 AGAAGAACACCTGCAACCTCA 59.510 47.619 0.00 0.00 0.00 3.86
1020 1125 2.943978 CGCGGGGAGAAGAACACCT 61.944 63.158 0.00 0.00 0.00 4.00
1057 1162 1.207593 CGAAAGAGGCTGCGTTTGG 59.792 57.895 0.00 0.00 0.00 3.28
1254 1362 1.106944 GCCTCTTCCTCCTCTCCTCG 61.107 65.000 0.00 0.00 0.00 4.63
1540 1648 4.707448 ACAACCATCCTAGACTGTAGACTG 59.293 45.833 0.00 0.00 0.00 3.51
1604 1712 1.877443 GCTAGACATCCTCGGTCTCTC 59.123 57.143 0.00 0.00 44.14 3.20
1605 1713 1.213182 TGCTAGACATCCTCGGTCTCT 59.787 52.381 0.00 0.00 44.14 3.10
1668 1776 4.702392 CAAAGATTCGACGAACAGAAAGG 58.298 43.478 13.38 0.00 0.00 3.11
1720 1828 9.145645 AAAAGACAAATATTTTGGACCGGAGGG 62.146 40.741 9.46 0.00 38.97 4.30
1721 1829 6.295067 AAAAGACAAATATTTTGGACCGGAGG 60.295 38.462 9.46 0.00 39.95 4.30
1722 1830 5.897377 AAGACAAATATTTTGGACCGGAG 57.103 39.130 9.46 0.00 0.00 4.63
1723 1831 6.658188 AAAAGACAAATATTTTGGACCGGA 57.342 33.333 9.46 0.00 28.15 5.14
1724 1832 8.301002 TCTAAAAAGACAAATATTTTGGACCGG 58.699 33.333 0.00 0.00 31.38 5.28
1725 1833 9.855021 ATCTAAAAAGACAAATATTTTGGACCG 57.145 29.630 0.00 0.00 36.69 4.79
1751 1859 9.825109 TCCGTATGTGATAGTTCATTTGAAATA 57.175 29.630 3.28 3.28 38.67 1.40
1752 1860 8.612619 GTCCGTATGTGATAGTTCATTTGAAAT 58.387 33.333 0.00 0.00 35.58 2.17
1753 1861 7.201487 CGTCCGTATGTGATAGTTCATTTGAAA 60.201 37.037 0.00 0.00 35.58 2.69
1754 1862 6.254804 CGTCCGTATGTGATAGTTCATTTGAA 59.745 38.462 0.00 0.00 33.56 2.69
1755 1863 5.746721 CGTCCGTATGTGATAGTTCATTTGA 59.253 40.000 0.00 0.00 33.56 2.69
1756 1864 5.518847 ACGTCCGTATGTGATAGTTCATTTG 59.481 40.000 0.00 0.00 33.56 2.32
1757 1865 5.657474 ACGTCCGTATGTGATAGTTCATTT 58.343 37.500 0.00 0.00 33.56 2.32
1758 1866 5.258456 ACGTCCGTATGTGATAGTTCATT 57.742 39.130 0.00 0.00 33.56 2.57
1759 1867 4.913335 ACGTCCGTATGTGATAGTTCAT 57.087 40.909 0.00 0.00 33.56 2.57
1760 1868 7.677454 ATATACGTCCGTATGTGATAGTTCA 57.323 36.000 19.58 0.00 40.98 3.18
1761 1869 9.483062 GTTATATACGTCCGTATGTGATAGTTC 57.517 37.037 19.58 4.52 40.98 3.01
1762 1870 8.454106 GGTTATATACGTCCGTATGTGATAGTT 58.546 37.037 19.58 0.00 40.98 2.24
1763 1871 7.607607 TGGTTATATACGTCCGTATGTGATAGT 59.392 37.037 19.58 0.00 40.98 2.12
1764 1872 7.977904 TGGTTATATACGTCCGTATGTGATAG 58.022 38.462 19.58 0.00 40.98 2.08
1765 1873 7.920160 TGGTTATATACGTCCGTATGTGATA 57.080 36.000 19.58 8.95 40.98 2.15
1766 1874 6.822667 TGGTTATATACGTCCGTATGTGAT 57.177 37.500 19.58 9.78 40.98 3.06
1767 1875 6.822667 ATGGTTATATACGTCCGTATGTGA 57.177 37.500 19.58 9.23 40.98 3.58
1768 1876 9.577110 AAATATGGTTATATACGTCCGTATGTG 57.423 33.333 19.58 0.00 40.98 3.21
1799 1907 7.978982 ACATAGCAAAATGAGTGAATCTACAC 58.021 34.615 0.00 0.00 40.60 2.90
1800 1908 9.836864 ATACATAGCAAAATGAGTGAATCTACA 57.163 29.630 1.26 0.00 0.00 2.74
1809 1917 9.712305 GGTGACTATATACATAGCAAAATGAGT 57.288 33.333 1.26 0.00 38.17 3.41
1810 1918 9.935241 AGGTGACTATATACATAGCAAAATGAG 57.065 33.333 1.26 0.00 40.61 2.90
1811 1919 9.710900 CAGGTGACTATATACATAGCAAAATGA 57.289 33.333 1.26 0.00 40.21 2.57
1812 1920 9.494271 ACAGGTGACTATATACATAGCAAAATG 57.506 33.333 0.00 0.00 40.21 2.32
1814 1922 9.325198 CAACAGGTGACTATATACATAGCAAAA 57.675 33.333 0.00 0.00 40.21 2.44
1815 1923 8.700973 TCAACAGGTGACTATATACATAGCAAA 58.299 33.333 0.00 0.00 40.21 3.68
1816 1924 8.245195 TCAACAGGTGACTATATACATAGCAA 57.755 34.615 0.00 0.00 40.21 3.91
1817 1925 7.833285 TCAACAGGTGACTATATACATAGCA 57.167 36.000 0.00 0.00 40.21 3.49
1818 1926 9.712305 ATTTCAACAGGTGACTATATACATAGC 57.288 33.333 0.00 0.00 40.21 2.97
1821 1929 9.988815 GAGATTTCAACAGGTGACTATATACAT 57.011 33.333 0.00 0.00 40.21 2.29
1822 1930 9.201989 AGAGATTTCAACAGGTGACTATATACA 57.798 33.333 0.00 0.00 40.21 2.29
1825 1933 9.647918 TCTAGAGATTTCAACAGGTGACTATAT 57.352 33.333 0.00 0.00 40.21 0.86
1826 1934 9.475620 TTCTAGAGATTTCAACAGGTGACTATA 57.524 33.333 0.00 0.00 40.21 1.31
1827 1935 7.962995 TCTAGAGATTTCAACAGGTGACTAT 57.037 36.000 0.00 0.00 40.21 2.12
1828 1936 7.776618 TTCTAGAGATTTCAACAGGTGACTA 57.223 36.000 0.00 0.00 40.21 2.59
1829 1937 6.672266 TTCTAGAGATTTCAACAGGTGACT 57.328 37.500 0.00 0.00 46.44 3.41
1830 1938 7.117092 GTCTTTCTAGAGATTTCAACAGGTGAC 59.883 40.741 0.00 0.00 35.39 3.67
1831 1939 7.155328 GTCTTTCTAGAGATTTCAACAGGTGA 58.845 38.462 0.00 0.00 0.00 4.02
1832 1940 6.931281 TGTCTTTCTAGAGATTTCAACAGGTG 59.069 38.462 0.00 0.00 0.00 4.00
1833 1941 7.067496 TGTCTTTCTAGAGATTTCAACAGGT 57.933 36.000 0.00 0.00 0.00 4.00
1834 1942 7.969536 TTGTCTTTCTAGAGATTTCAACAGG 57.030 36.000 0.00 0.00 0.00 4.00
1849 1957 9.908152 CCTCCGTTTTTAAATATTTGTCTTTCT 57.092 29.630 11.05 0.00 0.00 2.52
1850 1958 9.902196 TCCTCCGTTTTTAAATATTTGTCTTTC 57.098 29.630 11.05 0.00 0.00 2.62
1852 1960 9.908152 CTTCCTCCGTTTTTAAATATTTGTCTT 57.092 29.630 11.05 0.00 0.00 3.01
1853 1961 9.074576 ACTTCCTCCGTTTTTAAATATTTGTCT 57.925 29.630 11.05 0.00 0.00 3.41
1950 2059 1.445582 GTGGTGGTCGGAACTAGCG 60.446 63.158 0.00 0.00 37.20 4.26
1986 2099 4.775236 AGCCACTTAGAAAATGCTCCTAG 58.225 43.478 0.00 0.00 0.00 3.02
2208 2324 1.137872 AGCCTGTGTCTATGCTAGCAC 59.862 52.381 22.07 7.93 35.13 4.40
2223 2339 2.750237 GCGGGGGTTGTTAGCCTG 60.750 66.667 0.00 0.00 41.80 4.85
2224 2340 4.043100 GGCGGGGGTTGTTAGCCT 62.043 66.667 0.00 0.00 44.06 4.58
2227 2343 4.435970 GGGGGCGGGGGTTGTTAG 62.436 72.222 0.00 0.00 0.00 2.34
2228 2344 3.576078 TAGGGGGCGGGGGTTGTTA 62.576 63.158 0.00 0.00 0.00 2.41
2231 2347 4.123545 CTTAGGGGGCGGGGGTTG 62.124 72.222 0.00 0.00 0.00 3.77
2232 2348 4.358181 TCTTAGGGGGCGGGGGTT 62.358 66.667 0.00 0.00 0.00 4.11
2236 2352 3.846430 GTCGTCTTAGGGGGCGGG 61.846 72.222 0.00 0.00 0.00 6.13
2237 2353 2.175035 TTTGTCGTCTTAGGGGGCGG 62.175 60.000 0.00 0.00 0.00 6.13
2238 2354 0.739813 CTTTGTCGTCTTAGGGGGCG 60.740 60.000 0.00 0.00 0.00 6.13
2239 2355 0.323957 ACTTTGTCGTCTTAGGGGGC 59.676 55.000 0.00 0.00 0.00 5.80
2240 2356 1.621814 TGACTTTGTCGTCTTAGGGGG 59.378 52.381 0.00 0.00 34.95 5.40
2241 2357 2.561419 TCTGACTTTGTCGTCTTAGGGG 59.439 50.000 0.00 0.00 34.95 4.79
2242 2358 3.936372 TCTGACTTTGTCGTCTTAGGG 57.064 47.619 0.00 0.00 34.95 3.53
2243 2359 4.177026 CCATCTGACTTTGTCGTCTTAGG 58.823 47.826 0.00 0.00 34.95 2.69
2244 2360 4.177026 CCCATCTGACTTTGTCGTCTTAG 58.823 47.826 0.00 0.00 34.95 2.18
2245 2361 3.056107 CCCCATCTGACTTTGTCGTCTTA 60.056 47.826 0.00 0.00 34.95 2.10
2246 2362 2.289694 CCCCATCTGACTTTGTCGTCTT 60.290 50.000 0.00 0.00 34.95 3.01
2247 2363 1.276421 CCCCATCTGACTTTGTCGTCT 59.724 52.381 0.00 0.00 34.95 4.18
2248 2364 1.726853 CCCCATCTGACTTTGTCGTC 58.273 55.000 0.00 0.00 34.95 4.20
2249 2365 0.321653 GCCCCATCTGACTTTGTCGT 60.322 55.000 0.00 0.00 34.95 4.34
2250 2366 1.361668 CGCCCCATCTGACTTTGTCG 61.362 60.000 0.00 0.00 34.95 4.35
2251 2367 1.026718 CCGCCCCATCTGACTTTGTC 61.027 60.000 0.00 0.00 0.00 3.18
2252 2368 1.002134 CCGCCCCATCTGACTTTGT 60.002 57.895 0.00 0.00 0.00 2.83
2253 2369 1.750399 CCCGCCCCATCTGACTTTG 60.750 63.158 0.00 0.00 0.00 2.77
2254 2370 2.677228 CCCGCCCCATCTGACTTT 59.323 61.111 0.00 0.00 0.00 2.66
2255 2371 3.411517 CCCCGCCCCATCTGACTT 61.412 66.667 0.00 0.00 0.00 3.01
2272 2388 1.128188 ATAATCCAGGAGTCCCCCGC 61.128 60.000 5.25 0.00 34.66 6.13
2273 2389 0.687354 CATAATCCAGGAGTCCCCCG 59.313 60.000 5.25 0.00 34.66 5.73
2274 2390 0.402121 GCATAATCCAGGAGTCCCCC 59.598 60.000 5.25 0.00 34.66 5.40
2275 2391 0.402121 GGCATAATCCAGGAGTCCCC 59.598 60.000 5.25 0.00 0.00 4.81
2276 2392 0.035458 CGGCATAATCCAGGAGTCCC 59.965 60.000 5.25 0.00 0.00 4.46
2277 2393 0.603975 GCGGCATAATCCAGGAGTCC 60.604 60.000 0.00 0.00 0.00 3.85
2278 2394 0.603975 GGCGGCATAATCCAGGAGTC 60.604 60.000 3.07 0.00 0.00 3.36
2279 2395 1.344953 TGGCGGCATAATCCAGGAGT 61.345 55.000 7.97 0.00 0.00 3.85
2280 2396 0.604780 CTGGCGGCATAATCCAGGAG 60.605 60.000 13.85 0.00 42.70 3.69
2281 2397 1.451504 CTGGCGGCATAATCCAGGA 59.548 57.895 13.85 0.00 42.70 3.86
2282 2398 2.263741 GCTGGCGGCATAATCCAGG 61.264 63.158 13.85 0.00 45.63 4.45
2284 2400 2.203337 GGCTGGCGGCATAATCCA 60.203 61.111 21.68 0.00 44.01 3.41
2285 2401 2.203337 TGGCTGGCGGCATAATCC 60.203 61.111 21.68 12.09 44.01 3.01
2291 2407 4.657408 TCAATGTGGCTGGCGGCA 62.657 61.111 21.68 12.58 44.01 5.69
2292 2408 3.818787 CTCAATGTGGCTGGCGGC 61.819 66.667 10.59 10.59 40.90 6.53
2293 2409 0.676466 TTACTCAATGTGGCTGGCGG 60.676 55.000 0.00 0.00 0.00 6.13
2294 2410 1.164411 TTTACTCAATGTGGCTGGCG 58.836 50.000 0.00 0.00 0.00 5.69
2295 2411 3.731867 CGATTTTACTCAATGTGGCTGGC 60.732 47.826 0.00 0.00 0.00 4.85
2296 2412 3.440173 ACGATTTTACTCAATGTGGCTGG 59.560 43.478 0.00 0.00 0.00 4.85
2297 2413 4.154015 TGACGATTTTACTCAATGTGGCTG 59.846 41.667 0.00 0.00 0.00 4.85
2298 2414 4.154195 GTGACGATTTTACTCAATGTGGCT 59.846 41.667 0.00 0.00 0.00 4.75
2299 2415 4.403453 GTGACGATTTTACTCAATGTGGC 58.597 43.478 0.00 0.00 0.00 5.01
2300 2416 4.969816 GGTGACGATTTTACTCAATGTGG 58.030 43.478 0.00 0.00 0.00 4.17
2317 2433 2.352519 GGTTGAGTAGAAGACCGGTGAC 60.353 54.545 14.63 0.00 0.00 3.67
2318 2434 1.891150 GGTTGAGTAGAAGACCGGTGA 59.109 52.381 14.63 0.00 0.00 4.02
2319 2435 1.893801 AGGTTGAGTAGAAGACCGGTG 59.106 52.381 14.63 0.00 37.26 4.94
2320 2436 1.893801 CAGGTTGAGTAGAAGACCGGT 59.106 52.381 6.92 6.92 37.26 5.28
2321 2437 1.404315 GCAGGTTGAGTAGAAGACCGG 60.404 57.143 0.00 0.00 37.26 5.28
2322 2438 1.272490 TGCAGGTTGAGTAGAAGACCG 59.728 52.381 0.00 0.00 37.26 4.79
2323 2439 3.618690 ATGCAGGTTGAGTAGAAGACC 57.381 47.619 0.00 0.00 0.00 3.85
2324 2440 5.073311 TGTATGCAGGTTGAGTAGAAGAC 57.927 43.478 0.00 0.00 0.00 3.01
2325 2441 5.664457 CATGTATGCAGGTTGAGTAGAAGA 58.336 41.667 0.00 0.00 0.00 2.87
2326 2442 5.980698 CATGTATGCAGGTTGAGTAGAAG 57.019 43.478 0.00 0.00 0.00 2.85
2341 2457 7.734924 ACAACTATAGATGTTGGCATGTATG 57.265 36.000 9.69 0.00 46.28 2.39
2351 2467 4.159693 TGAGCACCGACAACTATAGATGTT 59.840 41.667 15.91 0.33 30.95 2.71
2352 2468 3.699538 TGAGCACCGACAACTATAGATGT 59.300 43.478 14.87 14.87 33.59 3.06
2353 2469 4.202060 ACTGAGCACCGACAACTATAGATG 60.202 45.833 6.78 7.68 0.00 2.90
2354 2470 3.954904 ACTGAGCACCGACAACTATAGAT 59.045 43.478 6.78 0.00 0.00 1.98
2355 2471 3.353557 ACTGAGCACCGACAACTATAGA 58.646 45.455 6.78 0.00 0.00 1.98
2356 2472 3.696898 GACTGAGCACCGACAACTATAG 58.303 50.000 0.00 0.00 0.00 1.31
2357 2473 2.096980 CGACTGAGCACCGACAACTATA 59.903 50.000 0.00 0.00 0.00 1.31
2358 2474 1.135373 CGACTGAGCACCGACAACTAT 60.135 52.381 0.00 0.00 0.00 2.12
2359 2475 0.240145 CGACTGAGCACCGACAACTA 59.760 55.000 0.00 0.00 0.00 2.24
2360 2476 1.007271 CGACTGAGCACCGACAACT 60.007 57.895 0.00 0.00 0.00 3.16
2361 2477 0.039798 TACGACTGAGCACCGACAAC 60.040 55.000 0.00 0.00 0.00 3.32
2362 2478 0.240145 CTACGACTGAGCACCGACAA 59.760 55.000 0.00 0.00 0.00 3.18
2363 2479 0.887836 ACTACGACTGAGCACCGACA 60.888 55.000 0.00 0.00 0.00 4.35
2364 2480 1.062294 CTACTACGACTGAGCACCGAC 59.938 57.143 0.00 0.00 0.00 4.79
2365 2481 1.066645 TCTACTACGACTGAGCACCGA 60.067 52.381 0.00 0.00 0.00 4.69
2366 2482 1.366679 TCTACTACGACTGAGCACCG 58.633 55.000 0.00 0.00 0.00 4.94
2367 2483 3.377485 TCATTCTACTACGACTGAGCACC 59.623 47.826 0.00 0.00 0.00 5.01
2368 2484 4.617808 TCATTCTACTACGACTGAGCAC 57.382 45.455 0.00 0.00 0.00 4.40
2369 2485 5.836821 ATTCATTCTACTACGACTGAGCA 57.163 39.130 0.00 0.00 0.00 4.26
2370 2486 9.894783 TTTATATTCATTCTACTACGACTGAGC 57.105 33.333 0.00 0.00 0.00 4.26
2375 2491 9.367444 CCCCATTTATATTCATTCTACTACGAC 57.633 37.037 0.00 0.00 0.00 4.34
2376 2492 8.038944 GCCCCATTTATATTCATTCTACTACGA 58.961 37.037 0.00 0.00 0.00 3.43
2377 2493 8.041323 AGCCCCATTTATATTCATTCTACTACG 58.959 37.037 0.00 0.00 0.00 3.51
2378 2494 9.167311 CAGCCCCATTTATATTCATTCTACTAC 57.833 37.037 0.00 0.00 0.00 2.73
2379 2495 8.890472 ACAGCCCCATTTATATTCATTCTACTA 58.110 33.333 0.00 0.00 0.00 1.82
2380 2496 7.759607 ACAGCCCCATTTATATTCATTCTACT 58.240 34.615 0.00 0.00 0.00 2.57
2381 2497 8.299570 CAACAGCCCCATTTATATTCATTCTAC 58.700 37.037 0.00 0.00 0.00 2.59
2382 2498 8.224025 TCAACAGCCCCATTTATATTCATTCTA 58.776 33.333 0.00 0.00 0.00 2.10
2383 2499 7.068702 TCAACAGCCCCATTTATATTCATTCT 58.931 34.615 0.00 0.00 0.00 2.40
2384 2500 7.014615 ACTCAACAGCCCCATTTATATTCATTC 59.985 37.037 0.00 0.00 0.00 2.67
2385 2501 6.840705 ACTCAACAGCCCCATTTATATTCATT 59.159 34.615 0.00 0.00 0.00 2.57
2386 2502 6.376248 ACTCAACAGCCCCATTTATATTCAT 58.624 36.000 0.00 0.00 0.00 2.57
2387 2503 5.765510 ACTCAACAGCCCCATTTATATTCA 58.234 37.500 0.00 0.00 0.00 2.57
2388 2504 7.448469 ACATACTCAACAGCCCCATTTATATTC 59.552 37.037 0.00 0.00 0.00 1.75
2389 2505 7.297614 ACATACTCAACAGCCCCATTTATATT 58.702 34.615 0.00 0.00 0.00 1.28
2390 2506 6.852404 ACATACTCAACAGCCCCATTTATAT 58.148 36.000 0.00 0.00 0.00 0.86
2391 2507 6.260700 ACATACTCAACAGCCCCATTTATA 57.739 37.500 0.00 0.00 0.00 0.98
2392 2508 5.129368 ACATACTCAACAGCCCCATTTAT 57.871 39.130 0.00 0.00 0.00 1.40
2393 2509 4.584638 ACATACTCAACAGCCCCATTTA 57.415 40.909 0.00 0.00 0.00 1.40
2394 2510 3.456380 ACATACTCAACAGCCCCATTT 57.544 42.857 0.00 0.00 0.00 2.32
2395 2511 4.796110 ATACATACTCAACAGCCCCATT 57.204 40.909 0.00 0.00 0.00 3.16
2396 2512 4.796110 AATACATACTCAACAGCCCCAT 57.204 40.909 0.00 0.00 0.00 4.00
2397 2513 4.584638 AAATACATACTCAACAGCCCCA 57.415 40.909 0.00 0.00 0.00 4.96
2398 2514 7.937394 AGTATAAAATACATACTCAACAGCCCC 59.063 37.037 0.33 0.00 34.80 5.80
2399 2515 8.774586 CAGTATAAAATACATACTCAACAGCCC 58.225 37.037 0.33 0.00 37.15 5.19
2400 2516 8.283291 GCAGTATAAAATACATACTCAACAGCC 58.717 37.037 0.33 0.00 37.15 4.85
2401 2517 8.826710 TGCAGTATAAAATACATACTCAACAGC 58.173 33.333 0.33 0.00 37.15 4.40
2403 2519 8.813282 CGTGCAGTATAAAATACATACTCAACA 58.187 33.333 0.00 0.00 37.15 3.33
2404 2520 8.814235 ACGTGCAGTATAAAATACATACTCAAC 58.186 33.333 0.00 0.00 37.15 3.18
2405 2521 8.813282 CACGTGCAGTATAAAATACATACTCAA 58.187 33.333 0.82 0.00 37.15 3.02
2406 2522 7.977293 ACACGTGCAGTATAAAATACATACTCA 59.023 33.333 17.22 0.00 37.15 3.41
2407 2523 8.348983 ACACGTGCAGTATAAAATACATACTC 57.651 34.615 17.22 0.00 37.15 2.59
2408 2524 9.976511 ATACACGTGCAGTATAAAATACATACT 57.023 29.630 17.22 0.00 39.29 2.12
2411 2527 8.556194 CCAATACACGTGCAGTATAAAATACAT 58.444 33.333 17.22 0.00 32.19 2.29
2412 2528 7.764901 TCCAATACACGTGCAGTATAAAATACA 59.235 33.333 17.22 0.00 32.19 2.29
2413 2529 8.133754 TCCAATACACGTGCAGTATAAAATAC 57.866 34.615 17.22 0.00 32.19 1.89
2414 2530 7.982919 ACTCCAATACACGTGCAGTATAAAATA 59.017 33.333 17.22 0.00 32.19 1.40
2415 2531 6.821665 ACTCCAATACACGTGCAGTATAAAAT 59.178 34.615 17.22 0.00 32.19 1.82
2416 2532 6.167685 ACTCCAATACACGTGCAGTATAAAA 58.832 36.000 17.22 0.00 32.19 1.52
2417 2533 5.726397 ACTCCAATACACGTGCAGTATAAA 58.274 37.500 17.22 0.00 32.19 1.40
2418 2534 5.333299 ACTCCAATACACGTGCAGTATAA 57.667 39.130 17.22 0.00 32.19 0.98
2419 2535 4.994907 ACTCCAATACACGTGCAGTATA 57.005 40.909 17.22 0.00 32.19 1.47
2420 2536 3.887621 ACTCCAATACACGTGCAGTAT 57.112 42.857 17.22 3.16 33.79 2.12
2421 2537 3.671008 AACTCCAATACACGTGCAGTA 57.329 42.857 17.22 0.36 0.00 2.74
2422 2538 2.543777 AACTCCAATACACGTGCAGT 57.456 45.000 17.22 0.00 0.00 4.40
2423 2539 3.309682 CCATAACTCCAATACACGTGCAG 59.690 47.826 17.22 4.66 0.00 4.41
2424 2540 3.266636 CCATAACTCCAATACACGTGCA 58.733 45.455 17.22 2.06 0.00 4.57
2425 2541 3.267483 ACCATAACTCCAATACACGTGC 58.733 45.455 17.22 0.00 0.00 5.34
2426 2542 5.290158 GTGTACCATAACTCCAATACACGTG 59.710 44.000 15.48 15.48 34.80 4.49
2427 2543 5.413499 GTGTACCATAACTCCAATACACGT 58.587 41.667 0.00 0.00 34.80 4.49
2428 2544 4.807304 GGTGTACCATAACTCCAATACACG 59.193 45.833 0.00 0.00 42.03 4.49
2429 2545 5.985911 AGGTGTACCATAACTCCAATACAC 58.014 41.667 3.56 0.00 40.95 2.90
2430 2546 5.129815 GGAGGTGTACCATAACTCCAATACA 59.870 44.000 10.22 0.00 45.45 2.29
2431 2547 5.608449 GGAGGTGTACCATAACTCCAATAC 58.392 45.833 10.22 0.00 45.45 1.89
2432 2548 5.881923 GGAGGTGTACCATAACTCCAATA 57.118 43.478 10.22 0.00 45.45 1.90
2433 2549 4.772886 GGAGGTGTACCATAACTCCAAT 57.227 45.455 10.22 0.00 45.45 3.16
2436 2552 4.544683 ACTAGGAGGTGTACCATAACTCC 58.455 47.826 7.54 7.54 46.27 3.85
2437 2553 5.447757 AGACTAGGAGGTGTACCATAACTC 58.552 45.833 3.56 0.00 38.89 3.01
2438 2554 5.469210 AGACTAGGAGGTGTACCATAACT 57.531 43.478 3.56 0.00 38.89 2.24
2439 2555 5.421374 ACAAGACTAGGAGGTGTACCATAAC 59.579 44.000 3.56 0.00 38.89 1.89
2440 2556 5.586877 ACAAGACTAGGAGGTGTACCATAA 58.413 41.667 3.56 0.00 38.89 1.90
2441 2557 5.202746 ACAAGACTAGGAGGTGTACCATA 57.797 43.478 3.56 0.00 38.89 2.74
2442 2558 4.062490 ACAAGACTAGGAGGTGTACCAT 57.938 45.455 3.56 0.00 38.89 3.55
2443 2559 3.537795 ACAAGACTAGGAGGTGTACCA 57.462 47.619 3.56 0.00 38.89 3.25
2444 2560 6.363882 ACTATACAAGACTAGGAGGTGTACC 58.636 44.000 0.00 0.00 0.00 3.34
2445 2561 7.555554 TCAACTATACAAGACTAGGAGGTGTAC 59.444 40.741 0.00 0.00 0.00 2.90
2446 2562 7.636579 TCAACTATACAAGACTAGGAGGTGTA 58.363 38.462 0.00 0.00 0.00 2.90
2447 2563 6.491383 TCAACTATACAAGACTAGGAGGTGT 58.509 40.000 0.00 0.00 0.00 4.16
2448 2564 6.829298 TCTCAACTATACAAGACTAGGAGGTG 59.171 42.308 0.00 0.00 0.00 4.00
2449 2565 6.971340 TCTCAACTATACAAGACTAGGAGGT 58.029 40.000 0.00 0.00 0.00 3.85
2450 2566 9.226606 CTATCTCAACTATACAAGACTAGGAGG 57.773 40.741 0.00 0.00 0.00 4.30
2453 2569 9.226606 CCTCTATCTCAACTATACAAGACTAGG 57.773 40.741 0.00 0.00 0.00 3.02
2454 2570 9.787435 ACCTCTATCTCAACTATACAAGACTAG 57.213 37.037 0.00 0.00 0.00 2.57
2455 2571 9.781633 GACCTCTATCTCAACTATACAAGACTA 57.218 37.037 0.00 0.00 0.00 2.59
2456 2572 8.499406 AGACCTCTATCTCAACTATACAAGACT 58.501 37.037 0.00 0.00 0.00 3.24
2457 2573 8.685838 AGACCTCTATCTCAACTATACAAGAC 57.314 38.462 0.00 0.00 0.00 3.01
2458 2574 9.344772 GAAGACCTCTATCTCAACTATACAAGA 57.655 37.037 0.00 0.00 0.00 3.02
2459 2575 8.573035 GGAAGACCTCTATCTCAACTATACAAG 58.427 40.741 0.00 0.00 0.00 3.16
2460 2576 7.506261 GGGAAGACCTCTATCTCAACTATACAA 59.494 40.741 0.00 0.00 35.85 2.41
2461 2577 7.005296 GGGAAGACCTCTATCTCAACTATACA 58.995 42.308 0.00 0.00 35.85 2.29
2462 2578 7.457024 GGGAAGACCTCTATCTCAACTATAC 57.543 44.000 0.00 0.00 35.85 1.47
2478 2594 7.277981 CACGCATATATAATACAAGGGAAGACC 59.722 40.741 0.00 0.00 40.67 3.85
2479 2595 7.201530 GCACGCATATATAATACAAGGGAAGAC 60.202 40.741 0.00 0.00 0.00 3.01
2480 2596 6.816640 GCACGCATATATAATACAAGGGAAGA 59.183 38.462 0.00 0.00 0.00 2.87
2481 2597 6.593770 TGCACGCATATATAATACAAGGGAAG 59.406 38.462 0.00 0.00 0.00 3.46
2482 2598 6.370442 GTGCACGCATATATAATACAAGGGAA 59.630 38.462 0.00 0.00 0.00 3.97
2483 2599 5.872617 GTGCACGCATATATAATACAAGGGA 59.127 40.000 0.00 0.00 0.00 4.20
2484 2600 5.064707 GGTGCACGCATATATAATACAAGGG 59.935 44.000 11.45 0.00 0.00 3.95
2485 2601 5.641636 TGGTGCACGCATATATAATACAAGG 59.358 40.000 11.45 0.00 0.00 3.61
2486 2602 6.673076 GCTGGTGCACGCATATATAATACAAG 60.673 42.308 11.45 0.00 39.41 3.16
2487 2603 5.121611 GCTGGTGCACGCATATATAATACAA 59.878 40.000 11.45 0.00 39.41 2.41
2488 2604 4.629634 GCTGGTGCACGCATATATAATACA 59.370 41.667 11.45 0.00 39.41 2.29
2489 2605 4.629634 TGCTGGTGCACGCATATATAATAC 59.370 41.667 14.43 0.00 45.31 1.89
2490 2606 4.826556 TGCTGGTGCACGCATATATAATA 58.173 39.130 14.43 0.00 45.31 0.98
2491 2607 3.673902 TGCTGGTGCACGCATATATAAT 58.326 40.909 14.43 0.00 45.31 1.28
2492 2608 3.118905 TGCTGGTGCACGCATATATAA 57.881 42.857 14.43 0.00 45.31 0.98
2493 2609 2.829741 TGCTGGTGCACGCATATATA 57.170 45.000 14.43 0.00 45.31 0.86
2494 2610 3.704100 TGCTGGTGCACGCATATAT 57.296 47.368 14.43 0.00 45.31 0.86
2504 2620 0.392336 TTTGATTTGGGTGCTGGTGC 59.608 50.000 0.00 0.00 40.20 5.01
2505 2621 1.606224 GCTTTGATTTGGGTGCTGGTG 60.606 52.381 0.00 0.00 0.00 4.17
2506 2622 0.681175 GCTTTGATTTGGGTGCTGGT 59.319 50.000 0.00 0.00 0.00 4.00
2507 2623 0.680618 TGCTTTGATTTGGGTGCTGG 59.319 50.000 0.00 0.00 0.00 4.85
2508 2624 2.529780 TTGCTTTGATTTGGGTGCTG 57.470 45.000 0.00 0.00 0.00 4.41
2509 2625 2.633967 TCATTGCTTTGATTTGGGTGCT 59.366 40.909 0.00 0.00 0.00 4.40
2510 2626 2.997986 CTCATTGCTTTGATTTGGGTGC 59.002 45.455 0.00 0.00 0.00 5.01
2511 2627 4.261578 ACTCATTGCTTTGATTTGGGTG 57.738 40.909 0.00 0.00 0.00 4.61
2512 2628 6.014327 ACAATACTCATTGCTTTGATTTGGGT 60.014 34.615 0.00 0.00 44.62 4.51
2513 2629 6.400568 ACAATACTCATTGCTTTGATTTGGG 58.599 36.000 0.00 0.00 44.62 4.12
2514 2630 9.590451 AATACAATACTCATTGCTTTGATTTGG 57.410 29.630 0.00 0.00 44.62 3.28
2516 2632 9.090692 GCAATACAATACTCATTGCTTTGATTT 57.909 29.630 10.43 0.00 46.97 2.17
2517 2633 8.638685 GCAATACAATACTCATTGCTTTGATT 57.361 30.769 10.43 0.00 46.97 2.57
2525 2641 9.577110 AGATGTTTTGCAATACAATACTCATTG 57.423 29.630 23.53 0.00 45.94 2.82
2526 2642 9.793252 GAGATGTTTTGCAATACAATACTCATT 57.207 29.630 27.72 14.53 39.93 2.57
2527 2643 9.182214 AGAGATGTTTTGCAATACAATACTCAT 57.818 29.630 30.44 21.91 39.93 2.90
2528 2644 8.565896 AGAGATGTTTTGCAATACAATACTCA 57.434 30.769 30.44 13.29 39.93 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.