Multiple sequence alignment - TraesCS7B01G118400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G118400 chr7B 100.000 4756 0 0 1 4756 137803140 137798385 0.000000e+00 8783.0
1 TraesCS7B01G118400 chr7B 92.308 65 5 0 771 835 630554955 630555019 5.070000e-15 93.5
2 TraesCS7B01G118400 chr7A 91.021 2272 104 30 1984 4181 174215620 174213375 0.000000e+00 2974.0
3 TraesCS7B01G118400 chr7A 91.467 750 33 8 834 1567 174216949 174216215 0.000000e+00 1002.0
4 TraesCS7B01G118400 chr7A 92.124 419 32 1 1 419 636698083 636697666 1.470000e-164 590.0
5 TraesCS7B01G118400 chr7A 91.732 254 17 2 1712 1965 174215996 174215747 2.720000e-92 350.0
6 TraesCS7B01G118400 chr7A 87.500 192 23 1 644 834 636697652 636697461 2.230000e-53 220.0
7 TraesCS7B01G118400 chr7A 94.318 88 3 2 4669 4756 596329366 596329451 2.990000e-27 134.0
8 TraesCS7B01G118400 chr7A 93.976 83 4 1 4666 4748 14498142 14498061 1.800000e-24 124.0
9 TraesCS7B01G118400 chr7D 92.912 1820 74 15 2042 3816 171321172 171319363 0.000000e+00 2595.0
10 TraesCS7B01G118400 chr7D 90.534 824 45 18 11 834 162153320 162154110 0.000000e+00 1059.0
11 TraesCS7B01G118400 chr7D 93.700 619 27 2 943 1561 171322276 171321670 0.000000e+00 917.0
12 TraesCS7B01G118400 chr7D 88.934 488 38 9 4184 4665 171316972 171316495 5.300000e-164 588.0
13 TraesCS7B01G118400 chr7D 90.060 332 26 5 3856 4181 171317575 171317245 1.580000e-114 424.0
14 TraesCS7B01G118400 chr7D 94.096 271 11 2 1712 1981 171321441 171321175 1.590000e-109 407.0
15 TraesCS7B01G118400 chr7D 84.277 159 9 5 1562 1716 171321632 171321486 1.780000e-29 141.0
16 TraesCS7B01G118400 chr4B 95.569 835 20 4 1 835 37873138 37873955 0.000000e+00 1321.0
17 TraesCS7B01G118400 chr4B 85.484 124 18 0 709 832 615381887 615382010 3.860000e-26 130.0
18 TraesCS7B01G118400 chr6D 91.024 791 49 7 11 780 11346007 11346796 0.000000e+00 1048.0
19 TraesCS7B01G118400 chr6B 92.580 593 23 11 223 795 18113109 18113700 0.000000e+00 832.0
20 TraesCS7B01G118400 chr6B 96.438 365 12 1 11 375 93643678 93643315 6.810000e-168 601.0
21 TraesCS7B01G118400 chr6A 89.932 586 34 5 11 593 12617536 12618099 0.000000e+00 732.0
22 TraesCS7B01G118400 chr6A 90.494 263 25 0 571 833 12618039 12618301 9.800000e-92 348.0
23 TraesCS7B01G118400 chr6A 84.158 101 7 6 1965 2056 108214637 108214737 6.560000e-14 89.8
24 TraesCS7B01G118400 chr2B 96.438 365 13 0 11 375 734456165 734456529 1.890000e-168 603.0
25 TraesCS7B01G118400 chr2B 90.385 260 25 0 2068 2327 64070439 64070698 4.560000e-90 342.0
26 TraesCS7B01G118400 chr2B 90.000 260 26 0 2068 2327 64206757 64206498 2.120000e-88 337.0
27 TraesCS7B01G118400 chr2B 89.231 260 28 0 2068 2327 63855040 63855299 4.590000e-85 326.0
28 TraesCS7B01G118400 chr2B 83.529 340 41 3 993 1317 63849337 63849676 2.150000e-78 303.0
29 TraesCS7B01G118400 chr2B 87.037 270 33 2 2059 2327 64230241 64229973 2.150000e-78 303.0
30 TraesCS7B01G118400 chr2B 83.333 342 42 3 995 1321 64212615 64212274 7.740000e-78 302.0
31 TraesCS7B01G118400 chr2B 89.815 216 22 0 2404 2619 63845675 63845890 1.300000e-70 278.0
32 TraesCS7B01G118400 chr2B 85.130 269 40 0 997 1265 64764558 64764290 4.690000e-70 276.0
33 TraesCS7B01G118400 chr2B 87.215 219 28 0 2404 2622 64229861 64229643 2.840000e-62 250.0
34 TraesCS7B01G118400 chr2B 83.271 269 41 1 997 1265 63820474 63820738 1.320000e-60 244.0
35 TraesCS7B01G118400 chr2B 85.517 145 19 2 2491 2634 64625736 64625593 2.960000e-32 150.0
36 TraesCS7B01G118400 chr2B 85.517 145 19 2 2491 2634 64708632 64708489 2.960000e-32 150.0
37 TraesCS7B01G118400 chr2B 94.505 91 4 1 4666 4756 67894078 67894167 6.420000e-29 139.0
38 TraesCS7B01G118400 chr2B 90.909 66 6 0 1982 2047 447491731 447491666 6.560000e-14 89.8
39 TraesCS7B01G118400 chr3B 96.164 365 13 1 11 375 451343160 451342797 3.170000e-166 595.0
40 TraesCS7B01G118400 chr3B 94.915 59 3 0 1993 2051 608359247 608359305 5.070000e-15 93.5
41 TraesCS7B01G118400 chr3B 92.063 63 5 0 1994 2056 40688457 40688519 6.560000e-14 89.8
42 TraesCS7B01G118400 chr3B 93.333 60 4 0 1997 2056 389017095 389017036 6.560000e-14 89.8
43 TraesCS7B01G118400 chr1B 80.774 801 103 31 27 816 54920736 54921496 3.190000e-161 579.0
44 TraesCS7B01G118400 chr1B 80.400 801 106 31 27 816 54937686 54938446 3.210000e-156 562.0
45 TraesCS7B01G118400 chr1B 92.188 64 5 0 1993 2056 177513380 177513317 1.820000e-14 91.6
46 TraesCS7B01G118400 chr1B 89.706 68 3 4 767 832 7370621 7370686 3.050000e-12 84.2
47 TraesCS7B01G118400 chr3D 83.516 546 62 9 45 588 489410988 489410469 7.160000e-133 484.0
48 TraesCS7B01G118400 chr3D 94.444 90 4 1 4665 4754 58397537 58397625 2.310000e-28 137.0
49 TraesCS7B01G118400 chr2D 84.270 356 39 7 995 1334 37028168 37027814 9.870000e-87 331.0
50 TraesCS7B01G118400 chr2D 82.738 336 43 5 997 1317 37041169 37040834 7.790000e-73 285.0
51 TraesCS7B01G118400 chr2D 88.584 219 25 0 2404 2622 37031012 37030794 2.820000e-67 267.0
52 TraesCS7B01G118400 chr2D 86.147 231 30 2 2391 2620 37045425 37045196 1.020000e-61 248.0
53 TraesCS7B01G118400 chr2A 88.846 260 29 0 2068 2327 41644182 41643923 2.140000e-83 320.0
54 TraesCS7B01G118400 chr2A 86.066 244 34 0 2391 2634 41653926 41653683 3.650000e-66 263.0
55 TraesCS7B01G118400 chr2A 94.505 91 4 1 4666 4756 44757375 44757464 6.420000e-29 139.0
56 TraesCS7B01G118400 chr5D 81.462 383 42 15 468 821 377976261 377976643 2.170000e-73 287.0
57 TraesCS7B01G118400 chr5D 94.505 91 3 2 4666 4756 375197784 375197872 6.420000e-29 139.0
58 TraesCS7B01G118400 chr1D 96.667 90 2 1 4666 4755 39864704 39864616 1.070000e-31 148.0
59 TraesCS7B01G118400 chrUn 93.976 83 4 1 4666 4748 81417157 81417238 1.800000e-24 124.0
60 TraesCS7B01G118400 chr3A 87.356 87 6 3 4666 4752 175363188 175363269 1.410000e-15 95.3
61 TraesCS7B01G118400 chr1A 94.737 57 3 0 1998 2054 243863940 243863996 6.560000e-14 89.8
62 TraesCS7B01G118400 chr1A 94.118 51 3 0 2006 2056 5494121 5494171 1.420000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G118400 chr7B 137798385 137803140 4755 True 8783.000000 8783 100.000000 1 4756 1 chr7B.!!$R1 4755
1 TraesCS7B01G118400 chr7A 174213375 174216949 3574 True 1442.000000 2974 91.406667 834 4181 3 chr7A.!!$R2 3347
2 TraesCS7B01G118400 chr7A 636697461 636698083 622 True 405.000000 590 89.812000 1 834 2 chr7A.!!$R3 833
3 TraesCS7B01G118400 chr7D 162153320 162154110 790 False 1059.000000 1059 90.534000 11 834 1 chr7D.!!$F1 823
4 TraesCS7B01G118400 chr7D 171316495 171322276 5781 True 845.333333 2595 90.663167 943 4665 6 chr7D.!!$R1 3722
5 TraesCS7B01G118400 chr4B 37873138 37873955 817 False 1321.000000 1321 95.569000 1 835 1 chr4B.!!$F1 834
6 TraesCS7B01G118400 chr6D 11346007 11346796 789 False 1048.000000 1048 91.024000 11 780 1 chr6D.!!$F1 769
7 TraesCS7B01G118400 chr6B 18113109 18113700 591 False 832.000000 832 92.580000 223 795 1 chr6B.!!$F1 572
8 TraesCS7B01G118400 chr6A 12617536 12618301 765 False 540.000000 732 90.213000 11 833 2 chr6A.!!$F2 822
9 TraesCS7B01G118400 chr2B 63845675 63849676 4001 False 290.500000 303 86.672000 993 2619 2 chr2B.!!$F6 1626
10 TraesCS7B01G118400 chr2B 64229643 64230241 598 True 276.500000 303 87.126000 2059 2622 2 chr2B.!!$R7 563
11 TraesCS7B01G118400 chr1B 54920736 54921496 760 False 579.000000 579 80.774000 27 816 1 chr1B.!!$F2 789
12 TraesCS7B01G118400 chr1B 54937686 54938446 760 False 562.000000 562 80.400000 27 816 1 chr1B.!!$F3 789
13 TraesCS7B01G118400 chr3D 489410469 489410988 519 True 484.000000 484 83.516000 45 588 1 chr3D.!!$R1 543
14 TraesCS7B01G118400 chr2D 37027814 37031012 3198 True 299.000000 331 86.427000 995 2622 2 chr2D.!!$R3 1627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 991 0.243907 AGACGTCAGACCCATCAACG 59.756 55.0 19.50 0.00 40.29 4.10 F
1464 1536 0.240145 TCTGCAGTAGTCGACGTTGG 59.760 55.0 14.67 2.96 0.00 3.77 F
1523 1602 0.767446 CCCCATCCAGCATCTCCTCT 60.767 60.0 0.00 0.00 0.00 3.69 F
2317 2596 0.319083 ACGTGTACGGAGATGGCAAA 59.681 50.0 9.40 0.00 44.95 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2203 2482 1.448985 CGGAAACATAGGTGTGTGGG 58.551 55.000 0.00 0.00 38.92 4.61 R
2288 2567 3.067180 TCTCCGTACACGTGAACTTTCTT 59.933 43.478 25.01 0.00 37.74 2.52 R
2535 2871 3.424703 CTGAGAGCTTTTCCCATTTGGA 58.575 45.455 0.00 0.00 43.18 3.53 R
4267 9359 1.066716 CCCACATTCCAATTGCAGTGG 60.067 52.381 20.65 20.65 44.58 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
549 557 1.599518 AACCGGCAAGCAACGATGA 60.600 52.632 0.00 0.00 0.00 2.92
847 894 6.474140 TCATCGCCCTTGTAGAAAAGTATA 57.526 37.500 0.00 0.00 0.00 1.47
877 926 1.197721 CTGCTTTTTGTAGGAGGCACG 59.802 52.381 0.00 0.00 30.71 5.34
897 957 6.320171 GCACGTCTCTAACTGAATACTACAA 58.680 40.000 0.00 0.00 0.00 2.41
916 976 0.875728 ACGAAGAGTCCACTCAGACG 59.124 55.000 9.39 12.28 45.21 4.18
917 977 0.875728 CGAAGAGTCCACTCAGACGT 59.124 55.000 9.39 0.00 45.21 4.34
918 978 1.135916 CGAAGAGTCCACTCAGACGTC 60.136 57.143 7.70 7.70 45.21 4.34
919 979 1.880675 GAAGAGTCCACTCAGACGTCA 59.119 52.381 19.50 0.00 45.21 4.35
920 980 1.529226 AGAGTCCACTCAGACGTCAG 58.471 55.000 19.50 10.43 45.21 3.51
921 981 1.072489 AGAGTCCACTCAGACGTCAGA 59.928 52.381 19.50 14.75 45.21 3.27
922 982 1.198178 GAGTCCACTCAGACGTCAGAC 59.802 57.143 19.50 13.27 42.42 3.51
931 991 0.243907 AGACGTCAGACCCATCAACG 59.756 55.000 19.50 0.00 40.29 4.10
957 1017 3.414269 ACTTTTGTACCCACATAACCCG 58.586 45.455 0.00 0.00 33.76 5.28
1343 1403 3.091417 GCTTAATTAACTCGCGCAACTG 58.909 45.455 8.75 0.00 0.00 3.16
1421 1481 4.307432 TGAGATCTTGAGAACACGGAAAC 58.693 43.478 0.00 0.00 0.00 2.78
1450 1510 0.322975 GAAGAAGCCACCTCTCTGCA 59.677 55.000 0.00 0.00 0.00 4.41
1459 1531 1.131504 CACCTCTCTGCAGTAGTCGAC 59.868 57.143 14.67 7.70 0.00 4.20
1460 1532 0.375454 CCTCTCTGCAGTAGTCGACG 59.625 60.000 14.67 0.00 0.00 5.12
1461 1533 1.080298 CTCTCTGCAGTAGTCGACGT 58.920 55.000 14.67 1.19 0.00 4.34
1462 1534 1.465387 CTCTCTGCAGTAGTCGACGTT 59.535 52.381 14.67 0.00 0.00 3.99
1463 1535 1.197036 TCTCTGCAGTAGTCGACGTTG 59.803 52.381 14.67 10.87 0.00 4.10
1464 1536 0.240145 TCTGCAGTAGTCGACGTTGG 59.760 55.000 14.67 2.96 0.00 3.77
1465 1537 1.344942 CTGCAGTAGTCGACGTTGGC 61.345 60.000 10.46 13.39 0.00 4.52
1466 1538 2.434134 GCAGTAGTCGACGTTGGCG 61.434 63.158 10.46 0.00 44.93 5.69
1467 1539 1.208358 CAGTAGTCGACGTTGGCGA 59.792 57.895 10.46 0.00 42.00 5.54
1523 1602 0.767446 CCCCATCCAGCATCTCCTCT 60.767 60.000 0.00 0.00 0.00 3.69
1548 1627 2.036346 ACAAATTCCCTGAAGCAACTGC 59.964 45.455 0.00 0.00 42.49 4.40
1596 1712 2.357327 TCACATGTTTCCGGTACTCG 57.643 50.000 0.00 0.00 38.88 4.18
1612 1728 1.546476 ACTCGGCAGGTTCAGACTAAG 59.454 52.381 0.00 0.00 0.00 2.18
1676 1792 4.036380 AGTTGCCAAGTTGCTTTAGTACAC 59.964 41.667 0.00 0.00 0.00 2.90
1688 1804 6.727215 TGCTTTAGTACACCCGTTTAAAAAG 58.273 36.000 0.00 0.00 0.00 2.27
1729 1896 1.302033 CATCATGGCTACCGAGGGC 60.302 63.158 0.00 0.00 0.00 5.19
1764 1931 0.868406 CTCGTTGTCAGGTTTGAGGC 59.132 55.000 0.00 0.00 32.98 4.70
1856 2023 5.461032 TGAGAGGAAGAGAGAAAGTGAAC 57.539 43.478 0.00 0.00 0.00 3.18
1861 2028 4.835615 AGGAAGAGAGAAAGTGAACTGCTA 59.164 41.667 0.00 0.00 0.00 3.49
1862 2029 5.047377 AGGAAGAGAGAAAGTGAACTGCTAG 60.047 44.000 0.00 0.00 0.00 3.42
1863 2030 4.799564 AGAGAGAAAGTGAACTGCTAGG 57.200 45.455 0.00 0.00 0.00 3.02
2016 2295 7.821595 CACATTTTAGTGTTAGATACGTCCA 57.178 36.000 0.00 0.00 34.83 4.02
2040 2319 9.703892 CCATATCTAGACAAATCTAAGACAAGG 57.296 37.037 0.00 0.00 36.98 3.61
2203 2482 4.400567 AGGGCAATAGAAGAAGCAAACATC 59.599 41.667 0.00 0.00 0.00 3.06
2287 2566 3.330720 ACCCTTCTCCCGCCCAAG 61.331 66.667 0.00 0.00 0.00 3.61
2288 2567 3.009115 CCCTTCTCCCGCCCAAGA 61.009 66.667 0.00 0.00 0.00 3.02
2317 2596 0.319083 ACGTGTACGGAGATGGCAAA 59.681 50.000 9.40 0.00 44.95 3.68
2535 2871 7.395489 ACATCCTTAGTCAAAATGAGCTGATTT 59.605 33.333 5.21 5.21 0.00 2.17
2635 2971 9.163899 GGAAGGTAAGAAAGAATCGTCTATTTT 57.836 33.333 0.00 0.00 32.16 1.82
2775 3136 2.350772 GGTACAATGGCATTATGAGCGC 60.351 50.000 13.23 0.00 0.00 5.92
2790 3151 3.896122 TGAGCGCTCAATTGTTTTTACC 58.104 40.909 36.62 6.84 36.53 2.85
2900 3302 5.887754 AGGAATGCTCTTTTACCACCTAAA 58.112 37.500 0.00 0.00 0.00 1.85
3022 3514 5.739161 CAGCGCTAACATGAAAAGATAAACC 59.261 40.000 10.99 0.00 0.00 3.27
3215 3716 4.578516 TGTGTAGTCAAACTTCACCATTGG 59.421 41.667 12.42 0.00 43.22 3.16
3220 3721 7.604927 TGTAGTCAAACTTCACCATTGGTATAC 59.395 37.037 8.31 0.00 32.11 1.47
3221 3722 6.539173 AGTCAAACTTCACCATTGGTATACA 58.461 36.000 8.31 0.00 32.11 2.29
3563 4307 8.196771 AGTTTACTCAATTGACAAGCAAATTCA 58.803 29.630 3.38 0.00 40.48 2.57
3641 4420 1.416030 GGGCACTTCCACCACATTTTT 59.584 47.619 0.00 0.00 36.21 1.94
3660 4439 5.452078 TTTTTATGAGGGTTGCTCAACAG 57.548 39.130 13.89 0.00 42.85 3.16
3793 4575 4.203654 ACCTTAACTGCCTTACTAGCAC 57.796 45.455 0.00 0.00 36.01 4.40
3986 8806 8.575649 AGTGGTTTTATATTCGTGAGGAAAAT 57.424 30.769 0.00 0.00 38.36 1.82
4001 8822 6.148976 GTGAGGAAAATAAGGGTTCACTACAC 59.851 42.308 0.00 0.00 32.79 2.90
4173 8995 3.191669 TGTGTTGTACTTGTCTTGTCCG 58.808 45.455 0.00 0.00 0.00 4.79
4181 9003 1.665679 CTTGTCTTGTCCGCGCATATT 59.334 47.619 8.75 0.00 0.00 1.28
4182 9004 1.006086 TGTCTTGTCCGCGCATATTG 58.994 50.000 8.75 0.00 0.00 1.90
4232 9324 2.364324 TGTACTTGTATCATCTCCGGGC 59.636 50.000 0.00 0.00 0.00 6.13
4235 9327 0.758734 TTGTATCATCTCCGGGCTGG 59.241 55.000 5.83 5.83 40.09 4.85
4246 9338 3.935818 TCCGGGCTGGAAAATGTAATA 57.064 42.857 14.03 0.00 46.38 0.98
4253 9345 7.138736 CGGGCTGGAAAATGTAATAACTAATG 58.861 38.462 0.00 0.00 0.00 1.90
4278 9370 7.446319 TGATAGATAGATTTCCCACTGCAATTG 59.554 37.037 0.00 0.00 0.00 2.32
4285 9377 1.894466 TCCCACTGCAATTGGAATGTG 59.106 47.619 14.46 9.54 36.02 3.21
4296 9388 1.904287 TGGAATGTGGGTTGCAGTAC 58.096 50.000 0.00 0.00 0.00 2.73
4303 9395 2.969950 TGTGGGTTGCAGTACTTAGAGT 59.030 45.455 0.00 0.00 0.00 3.24
4305 9397 4.775780 TGTGGGTTGCAGTACTTAGAGTAT 59.224 41.667 0.00 0.00 32.65 2.12
4336 9429 1.681229 TCCCTAAATCCACCAAGCCT 58.319 50.000 0.00 0.00 0.00 4.58
4340 9433 4.044825 TCCCTAAATCCACCAAGCCTTTAA 59.955 41.667 0.00 0.00 0.00 1.52
4347 9440 3.639561 TCCACCAAGCCTTTAAGAAAACC 59.360 43.478 0.00 0.00 0.00 3.27
4349 9442 2.035449 ACCAAGCCTTTAAGAAAACCGC 59.965 45.455 0.00 0.00 0.00 5.68
4409 9506 7.176589 ACCATCAAACTAAGTCAACCAAAAA 57.823 32.000 0.00 0.00 0.00 1.94
4438 9535 3.305064 GGCAGATCTAACTGACCTCGATC 60.305 52.174 0.00 0.00 39.76 3.69
4450 9547 3.772572 TGACCTCGATCATTAAACCAGGA 59.227 43.478 0.00 0.00 0.00 3.86
4454 9551 4.332819 CCTCGATCATTAAACCAGGACAAC 59.667 45.833 0.00 0.00 0.00 3.32
4458 9555 3.492337 TCATTAAACCAGGACAACCCAC 58.508 45.455 0.00 0.00 37.41 4.61
4478 9575 3.502211 CACCGACCTAAATTGCTTCAGTT 59.498 43.478 0.00 0.00 0.00 3.16
4479 9576 3.751698 ACCGACCTAAATTGCTTCAGTTC 59.248 43.478 0.00 0.00 0.00 3.01
4480 9577 3.751175 CCGACCTAAATTGCTTCAGTTCA 59.249 43.478 0.00 0.00 0.00 3.18
4481 9578 4.142816 CCGACCTAAATTGCTTCAGTTCAG 60.143 45.833 0.00 0.00 0.00 3.02
4482 9579 4.452455 CGACCTAAATTGCTTCAGTTCAGT 59.548 41.667 0.00 0.00 0.00 3.41
4484 9581 4.520492 ACCTAAATTGCTTCAGTTCAGTGG 59.480 41.667 0.00 0.00 0.00 4.00
4485 9582 4.520492 CCTAAATTGCTTCAGTTCAGTGGT 59.480 41.667 0.00 0.00 0.00 4.16
4486 9583 3.996150 AATTGCTTCAGTTCAGTGGTG 57.004 42.857 0.00 0.00 0.00 4.17
4487 9584 2.708216 TTGCTTCAGTTCAGTGGTGA 57.292 45.000 0.00 0.00 0.00 4.02
4488 9585 2.245159 TGCTTCAGTTCAGTGGTGAG 57.755 50.000 0.00 0.00 32.98 3.51
4489 9586 1.486310 TGCTTCAGTTCAGTGGTGAGT 59.514 47.619 0.00 0.00 32.98 3.41
4508 9605 6.968904 GGTGAGTGCTCAACATATTTAATGTG 59.031 38.462 11.94 0.13 46.18 3.21
4553 9650 6.838198 TTACCGTCAATGCTAATCACATAC 57.162 37.500 0.00 0.00 0.00 2.39
4555 9652 6.156748 ACCGTCAATGCTAATCACATACTA 57.843 37.500 0.00 0.00 0.00 1.82
4650 9748 6.473778 GCACGCACATATCTCATATACCTAAG 59.526 42.308 0.00 0.00 0.00 2.18
4662 9760 8.059461 TCTCATATACCTAAGAAGTTCACCTCA 58.941 37.037 5.50 0.00 0.00 3.86
4663 9761 8.008513 TCATATACCTAAGAAGTTCACCTCAC 57.991 38.462 5.50 0.00 0.00 3.51
4664 9762 5.678955 ATACCTAAGAAGTTCACCTCACC 57.321 43.478 5.50 0.00 0.00 4.02
4665 9763 2.299297 ACCTAAGAAGTTCACCTCACCG 59.701 50.000 5.50 0.00 0.00 4.94
4666 9764 2.353803 CCTAAGAAGTTCACCTCACCGG 60.354 54.545 0.00 0.00 39.35 5.28
4667 9765 0.396811 AAGAAGTTCACCTCACCGGG 59.603 55.000 6.32 0.00 36.97 5.73
4668 9766 0.471211 AGAAGTTCACCTCACCGGGA 60.471 55.000 6.32 0.00 36.97 5.14
4669 9767 0.037232 GAAGTTCACCTCACCGGGAG 60.037 60.000 6.32 9.77 43.65 4.30
4681 9779 3.603365 CGGGAGGACCATTTTGGC 58.397 61.111 0.00 0.00 42.67 4.52
4682 9780 1.000896 CGGGAGGACCATTTTGGCT 60.001 57.895 0.00 0.00 42.67 4.75
4683 9781 1.032114 CGGGAGGACCATTTTGGCTC 61.032 60.000 0.00 0.00 42.67 4.70
4684 9782 0.332972 GGGAGGACCATTTTGGCTCT 59.667 55.000 0.00 0.00 42.67 4.09
4685 9783 1.272704 GGGAGGACCATTTTGGCTCTT 60.273 52.381 0.00 0.00 42.67 2.85
4686 9784 2.529632 GGAGGACCATTTTGGCTCTTT 58.470 47.619 0.00 0.00 42.67 2.52
4687 9785 2.232208 GGAGGACCATTTTGGCTCTTTG 59.768 50.000 0.00 0.00 42.67 2.77
4688 9786 2.232208 GAGGACCATTTTGGCTCTTTGG 59.768 50.000 0.00 0.00 42.67 3.28
4689 9787 1.276138 GGACCATTTTGGCTCTTTGGG 59.724 52.381 0.00 0.00 42.67 4.12
4690 9788 1.970640 GACCATTTTGGCTCTTTGGGT 59.029 47.619 0.00 0.00 42.67 4.51
4691 9789 1.693606 ACCATTTTGGCTCTTTGGGTG 59.306 47.619 0.00 0.00 42.67 4.61
4692 9790 1.608801 CCATTTTGGCTCTTTGGGTGC 60.609 52.381 0.00 0.00 0.00 5.01
4693 9791 1.070445 CATTTTGGCTCTTTGGGTGCA 59.930 47.619 0.00 0.00 36.29 4.57
4694 9792 1.422531 TTTTGGCTCTTTGGGTGCAT 58.577 45.000 0.00 0.00 36.29 3.96
4695 9793 2.300956 TTTGGCTCTTTGGGTGCATA 57.699 45.000 0.00 0.00 36.29 3.14
4696 9794 2.530460 TTGGCTCTTTGGGTGCATAT 57.470 45.000 0.00 0.00 36.29 1.78
4697 9795 1.766494 TGGCTCTTTGGGTGCATATG 58.234 50.000 0.00 0.00 36.29 1.78
4698 9796 0.386838 GGCTCTTTGGGTGCATATGC 59.613 55.000 21.09 21.09 42.50 3.14
4699 9797 1.396653 GCTCTTTGGGTGCATATGCT 58.603 50.000 27.13 0.00 42.66 3.79
4700 9798 1.336125 GCTCTTTGGGTGCATATGCTC 59.664 52.381 27.13 23.05 42.66 4.26
4708 9806 3.423539 GGTGCATATGCTCCCTAATGA 57.576 47.619 30.27 6.05 46.01 2.57
4709 9807 3.754965 GGTGCATATGCTCCCTAATGAA 58.245 45.455 30.27 5.34 46.01 2.57
4710 9808 3.503748 GGTGCATATGCTCCCTAATGAAC 59.496 47.826 30.27 15.84 46.01 3.18
4711 9809 4.136796 GTGCATATGCTCCCTAATGAACA 58.863 43.478 27.13 0.26 42.66 3.18
4712 9810 4.214971 GTGCATATGCTCCCTAATGAACAG 59.785 45.833 27.13 0.00 42.66 3.16
4713 9811 4.141413 TGCATATGCTCCCTAATGAACAGT 60.141 41.667 27.13 0.00 42.66 3.55
4714 9812 5.071653 TGCATATGCTCCCTAATGAACAGTA 59.928 40.000 27.13 0.00 42.66 2.74
4715 9813 5.997746 GCATATGCTCCCTAATGAACAGTAA 59.002 40.000 20.64 0.00 38.21 2.24
4716 9814 6.486657 GCATATGCTCCCTAATGAACAGTAAA 59.513 38.462 20.64 0.00 38.21 2.01
4717 9815 7.175641 GCATATGCTCCCTAATGAACAGTAAAT 59.824 37.037 20.64 0.00 38.21 1.40
4718 9816 9.071276 CATATGCTCCCTAATGAACAGTAAATT 57.929 33.333 0.00 0.00 0.00 1.82
4719 9817 7.573968 ATGCTCCCTAATGAACAGTAAATTC 57.426 36.000 0.00 0.00 0.00 2.17
4720 9818 6.480763 TGCTCCCTAATGAACAGTAAATTCA 58.519 36.000 0.00 0.00 40.25 2.57
4721 9819 6.945435 TGCTCCCTAATGAACAGTAAATTCAA 59.055 34.615 0.00 0.00 39.43 2.69
4722 9820 7.450014 TGCTCCCTAATGAACAGTAAATTCAAA 59.550 33.333 0.00 0.00 39.43 2.69
4723 9821 8.303876 GCTCCCTAATGAACAGTAAATTCAAAA 58.696 33.333 0.00 0.00 39.43 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
490 497 2.506061 CGCTCCTCCCTATGCAGCT 61.506 63.158 0.00 0.00 0.00 4.24
637 683 1.004440 GGAGAGCTTGAAGCACCGT 60.004 57.895 20.45 0.00 45.56 4.83
847 894 7.288810 TCCTACAAAAAGCAGACATGAAAAT 57.711 32.000 0.00 0.00 0.00 1.82
866 915 2.097791 CAGTTAGAGACGTGCCTCCTAC 59.902 54.545 0.00 0.00 33.76 3.18
877 926 8.449397 TCTTCGTTGTAGTATTCAGTTAGAGAC 58.551 37.037 0.00 0.00 0.00 3.36
897 957 0.875728 CGTCTGAGTGGACTCTTCGT 59.124 55.000 8.24 0.00 43.25 3.85
916 976 2.163818 TCAACGTTGATGGGTCTGAC 57.836 50.000 26.53 0.00 31.01 3.51
917 977 2.104111 AGTTCAACGTTGATGGGTCTGA 59.896 45.455 30.10 11.18 37.00 3.27
918 978 2.494059 AGTTCAACGTTGATGGGTCTG 58.506 47.619 30.10 1.41 37.00 3.51
919 979 2.930826 AGTTCAACGTTGATGGGTCT 57.069 45.000 30.10 19.07 37.00 3.85
920 980 3.982576 AAAGTTCAACGTTGATGGGTC 57.017 42.857 30.10 17.43 37.00 4.46
921 981 3.445805 ACAAAAGTTCAACGTTGATGGGT 59.554 39.130 30.10 18.72 37.00 4.51
922 982 4.040445 ACAAAAGTTCAACGTTGATGGG 57.960 40.909 30.10 18.15 37.00 4.00
931 991 6.210796 GGTTATGTGGGTACAAAAGTTCAAC 58.789 40.000 0.00 0.00 40.84 3.18
1143 1203 1.061799 CATGCGCTTTGAACGACAGC 61.062 55.000 9.73 0.00 0.00 4.40
1421 1481 0.250234 TGGCTTCTTCCCAGTCGATG 59.750 55.000 0.00 0.00 0.00 3.84
1450 1510 3.659334 TCGCCAACGTCGACTACT 58.341 55.556 14.70 0.00 41.18 2.57
1460 1532 4.364409 GACGCCGTTGTCGCCAAC 62.364 66.667 0.00 0.00 46.09 3.77
1461 1533 4.893601 TGACGCCGTTGTCGCCAA 62.894 61.111 0.00 0.00 41.87 4.52
1465 1537 3.103911 GAGGTGACGCCGTTGTCG 61.104 66.667 0.00 0.00 41.87 4.35
1466 1538 2.022129 CAGAGGTGACGCCGTTGTC 61.022 63.158 0.00 0.00 43.70 3.18
1467 1539 1.457823 TACAGAGGTGACGCCGTTGT 61.458 55.000 17.64 17.64 43.70 3.32
1468 1540 0.108804 ATACAGAGGTGACGCCGTTG 60.109 55.000 0.00 4.94 43.70 4.10
1469 1541 0.172803 GATACAGAGGTGACGCCGTT 59.827 55.000 0.00 0.00 43.70 4.44
1476 1548 3.033909 CCATGGAGTGATACAGAGGTGA 58.966 50.000 5.56 0.00 0.00 4.02
1507 1586 3.133542 TGTTACAGAGGAGATGCTGGATG 59.866 47.826 0.00 0.00 36.47 3.51
1508 1587 3.378512 TGTTACAGAGGAGATGCTGGAT 58.621 45.455 0.00 0.00 36.47 3.41
1509 1588 2.820178 TGTTACAGAGGAGATGCTGGA 58.180 47.619 0.00 0.00 36.47 3.86
1510 1589 3.616956 TTGTTACAGAGGAGATGCTGG 57.383 47.619 0.00 0.00 36.47 4.85
1511 1590 5.065731 GGAATTTGTTACAGAGGAGATGCTG 59.934 44.000 0.00 0.00 38.10 4.41
1512 1591 5.189180 GGAATTTGTTACAGAGGAGATGCT 58.811 41.667 0.00 0.00 0.00 3.79
1513 1592 4.336713 GGGAATTTGTTACAGAGGAGATGC 59.663 45.833 0.00 0.00 0.00 3.91
1514 1593 5.587844 CAGGGAATTTGTTACAGAGGAGATG 59.412 44.000 0.00 0.00 0.00 2.90
1523 1602 4.892934 AGTTGCTTCAGGGAATTTGTTACA 59.107 37.500 0.00 0.00 0.00 2.41
1548 1627 9.512588 AATCAGTGCCAGATATCTTAATAAAGG 57.487 33.333 1.33 0.40 33.22 3.11
1596 1712 3.263261 GCTTACTTAGTCTGAACCTGCC 58.737 50.000 0.00 0.00 0.00 4.85
1633 1749 8.773645 GGCAACTTTATTCTTGCATTTTTAGTT 58.226 29.630 4.87 0.00 43.89 2.24
1634 1750 7.930865 TGGCAACTTTATTCTTGCATTTTTAGT 59.069 29.630 4.87 0.00 43.89 2.24
1635 1751 8.309163 TGGCAACTTTATTCTTGCATTTTTAG 57.691 30.769 4.87 0.00 43.89 1.85
1676 1792 8.481641 CGAAATTCTTTAACCTTTTTAAACGGG 58.518 33.333 5.24 6.03 0.00 5.28
1729 1896 3.121738 ACGAGGTTTTCTTGGGTACAG 57.878 47.619 0.00 0.00 0.00 2.74
1764 1931 8.494016 ACTTTTAAGGTCTCCGAATGAATAAG 57.506 34.615 0.00 0.00 0.00 1.73
1808 1975 6.058183 GTCCTGACACCAAATTCAGCTATAT 58.942 40.000 0.00 0.00 38.36 0.86
1813 1980 2.229792 TGTCCTGACACCAAATTCAGC 58.770 47.619 0.00 0.00 38.36 4.26
1856 2023 5.598830 TCCAAACTTATAGTCCTCCTAGCAG 59.401 44.000 0.00 0.00 0.00 4.24
1861 2028 7.757242 AAGAATCCAAACTTATAGTCCTCCT 57.243 36.000 0.00 0.00 0.00 3.69
1862 2029 8.268605 AGAAAGAATCCAAACTTATAGTCCTCC 58.731 37.037 0.00 0.00 0.00 4.30
1863 2030 9.674068 AAGAAAGAATCCAAACTTATAGTCCTC 57.326 33.333 0.00 0.00 0.00 3.71
2005 2284 9.961264 AGATTTGTCTAGATATGGACGTATCTA 57.039 33.333 16.39 16.39 40.79 1.98
2014 2293 9.703892 CCTTGTCTTAGATTTGTCTAGATATGG 57.296 37.037 0.00 0.00 0.00 2.74
2030 2309 3.689649 CCGTCCCAAATTCCTTGTCTTAG 59.310 47.826 0.00 0.00 32.65 2.18
2039 2318 2.793288 TTACCTCCGTCCCAAATTCC 57.207 50.000 0.00 0.00 0.00 3.01
2040 2319 9.901172 ATATTATATTACCTCCGTCCCAAATTC 57.099 33.333 0.00 0.00 0.00 2.17
2045 2324 8.898303 TGTAATATTATATTACCTCCGTCCCA 57.102 34.615 24.08 7.14 34.51 4.37
2203 2482 1.448985 CGGAAACATAGGTGTGTGGG 58.551 55.000 0.00 0.00 38.92 4.61
2287 2566 3.374745 TCCGTACACGTGAACTTTCTTC 58.625 45.455 25.01 0.00 37.74 2.87
2288 2567 3.067180 TCTCCGTACACGTGAACTTTCTT 59.933 43.478 25.01 0.00 37.74 2.52
2317 2596 9.520515 AAATGTTCATAGTTATGACCTTTGACT 57.479 29.630 1.41 0.00 42.00 3.41
2402 2738 5.852827 TCGTCCATGAATATCACTGCATAA 58.147 37.500 0.00 0.00 0.00 1.90
2535 2871 3.424703 CTGAGAGCTTTTCCCATTTGGA 58.575 45.455 0.00 0.00 43.18 3.53
2746 3107 9.507329 CTCATAATGCCATTGTACCTACTAATT 57.493 33.333 0.00 0.00 0.00 1.40
2775 3136 9.528018 ACTTTGTACATGGTAAAAACAATTGAG 57.472 29.630 13.59 0.00 30.76 3.02
2852 3213 6.472016 TCAAGAGAAGTGTAACATAATGCCA 58.528 36.000 0.00 0.00 41.43 4.92
2900 3302 5.473504 GTGGACAAGAGGATAACATGTGTTT 59.526 40.000 0.00 0.00 39.31 2.83
3259 3921 5.622770 GGTCATGACCGATTTAGTTTTGT 57.377 39.130 28.52 0.00 42.29 2.83
3563 4307 8.803235 TCATACAAGTAGAATAGTGTCAACTGT 58.197 33.333 0.00 0.00 37.19 3.55
3660 4439 6.951198 TCTCCATCCTCCTCTATATCAAAGTC 59.049 42.308 0.00 0.00 0.00 3.01
3793 4575 2.161855 ACATATGTGGTGTGCAAGGTG 58.838 47.619 7.78 0.00 0.00 4.00
3922 8738 1.542915 GACACATGTGGCAAGCAATCT 59.457 47.619 27.13 2.08 38.82 2.40
3956 8776 7.881232 TCCTCACGAATATAAAACCACTTCTTT 59.119 33.333 0.00 0.00 0.00 2.52
3986 8806 5.104693 CCATATGTGGTGTAGTGAACCCTTA 60.105 44.000 0.00 0.00 40.83 2.69
4171 8993 5.211454 TCATTACAAATTCAATATGCGCGG 58.789 37.500 8.83 0.00 0.00 6.46
4173 8995 6.346040 GGCTTCATTACAAATTCAATATGCGC 60.346 38.462 0.00 0.00 0.00 6.09
4181 9003 9.368674 CATACAATTGGCTTCATTACAAATTCA 57.631 29.630 10.83 0.00 0.00 2.57
4182 9004 9.369904 ACATACAATTGGCTTCATTACAAATTC 57.630 29.630 10.83 0.00 0.00 2.17
4253 9345 7.094463 CCAATTGCAGTGGGAAATCTATCTATC 60.094 40.741 10.05 0.00 32.03 2.08
4267 9359 1.066716 CCCACATTCCAATTGCAGTGG 60.067 52.381 20.65 20.65 44.58 4.00
4278 9370 2.200373 AGTACTGCAACCCACATTCC 57.800 50.000 0.00 0.00 0.00 3.01
4285 9377 5.221283 GGAGATACTCTAAGTACTGCAACCC 60.221 48.000 0.00 0.00 32.84 4.11
4296 9388 8.893563 AGGGAATCTATTGGAGATACTCTAAG 57.106 38.462 0.00 0.00 44.68 2.18
4303 9395 8.826765 GTGGATTTAGGGAATCTATTGGAGATA 58.173 37.037 0.00 0.00 44.68 1.98
4305 9397 6.044404 GGTGGATTTAGGGAATCTATTGGAGA 59.956 42.308 0.00 0.00 43.08 3.71
4309 9402 6.015940 GCTTGGTGGATTTAGGGAATCTATTG 60.016 42.308 0.00 0.00 43.08 1.90
4336 9429 7.858879 GTCTTTATGTTGAGCGGTTTTCTTAAA 59.141 33.333 0.00 0.00 0.00 1.52
4340 9433 5.063880 AGTCTTTATGTTGAGCGGTTTTCT 58.936 37.500 0.00 0.00 0.00 2.52
4347 9440 3.865745 CACCCTAGTCTTTATGTTGAGCG 59.134 47.826 0.00 0.00 0.00 5.03
4349 9442 4.832248 TGCACCCTAGTCTTTATGTTGAG 58.168 43.478 0.00 0.00 0.00 3.02
4409 9506 5.013599 AGGTCAGTTAGATCTGCCTCTTTTT 59.986 40.000 5.18 0.00 35.99 1.94
4427 9524 4.122776 CCTGGTTTAATGATCGAGGTCAG 58.877 47.826 0.00 0.00 0.00 3.51
4438 9535 2.560981 GGTGGGTTGTCCTGGTTTAATG 59.439 50.000 0.00 0.00 36.20 1.90
4450 9547 2.510613 CAATTTAGGTCGGTGGGTTGT 58.489 47.619 0.00 0.00 0.00 3.32
4454 9551 1.743394 GAAGCAATTTAGGTCGGTGGG 59.257 52.381 0.00 0.00 0.00 4.61
4458 9555 3.751175 TGAACTGAAGCAATTTAGGTCGG 59.249 43.478 0.00 0.00 29.55 4.79
4478 9575 0.829990 TGTTGAGCACTCACCACTGA 59.170 50.000 0.00 0.00 39.66 3.41
4479 9576 1.888215 ATGTTGAGCACTCACCACTG 58.112 50.000 0.00 0.00 39.66 3.66
4480 9577 3.988976 ATATGTTGAGCACTCACCACT 57.011 42.857 0.00 0.00 39.66 4.00
4481 9578 6.494893 TTAAATATGTTGAGCACTCACCAC 57.505 37.500 0.00 0.00 39.66 4.16
4482 9579 6.658816 ACATTAAATATGTTGAGCACTCACCA 59.341 34.615 0.00 0.00 39.66 4.17
4484 9581 6.470235 GCACATTAAATATGTTGAGCACTCAC 59.530 38.462 0.00 0.00 39.66 3.51
4485 9582 6.150809 TGCACATTAAATATGTTGAGCACTCA 59.849 34.615 0.00 0.00 37.91 3.41
4486 9583 6.554419 TGCACATTAAATATGTTGAGCACTC 58.446 36.000 0.00 0.00 0.00 3.51
4487 9584 6.513806 TGCACATTAAATATGTTGAGCACT 57.486 33.333 0.00 0.00 0.00 4.40
4488 9585 7.760131 ATTGCACATTAAATATGTTGAGCAC 57.240 32.000 0.00 0.00 31.27 4.40
4489 9586 9.866798 TTAATTGCACATTAAATATGTTGAGCA 57.133 25.926 9.96 0.00 30.15 4.26
4531 9628 6.156748 AGTATGTGATTAGCATTGACGGTA 57.843 37.500 0.00 0.00 0.00 4.02
4533 9630 7.658179 ATTAGTATGTGATTAGCATTGACGG 57.342 36.000 0.00 0.00 0.00 4.79
4603 9701 7.446001 TGCAACACACATTGATAATAGACAA 57.554 32.000 0.00 0.00 0.00 3.18
4650 9748 0.037232 CTCCCGGTGAGGTGAACTTC 60.037 60.000 11.05 0.00 37.45 3.01
4660 9758 0.037590 CAAAATGGTCCTCCCGGTGA 59.962 55.000 0.00 0.00 35.15 4.02
4662 9760 1.382629 CCAAAATGGTCCTCCCGGT 59.617 57.895 0.00 0.00 35.15 5.28
4663 9761 2.052104 GCCAAAATGGTCCTCCCGG 61.052 63.158 0.00 0.00 40.46 5.73
4664 9762 1.000896 AGCCAAAATGGTCCTCCCG 60.001 57.895 0.00 0.00 40.46 5.14
4665 9763 0.332972 AGAGCCAAAATGGTCCTCCC 59.667 55.000 0.00 0.00 40.46 4.30
4666 9764 2.222227 AAGAGCCAAAATGGTCCTCC 57.778 50.000 0.00 0.00 40.46 4.30
4667 9765 2.232208 CCAAAGAGCCAAAATGGTCCTC 59.768 50.000 0.00 0.00 40.46 3.71
4668 9766 2.250924 CCAAAGAGCCAAAATGGTCCT 58.749 47.619 0.00 0.00 40.46 3.85
4669 9767 1.276138 CCCAAAGAGCCAAAATGGTCC 59.724 52.381 0.00 0.00 40.46 4.46
4670 9768 1.970640 ACCCAAAGAGCCAAAATGGTC 59.029 47.619 0.00 0.00 40.46 4.02
4671 9769 1.693606 CACCCAAAGAGCCAAAATGGT 59.306 47.619 0.00 0.00 40.46 3.55
4672 9770 1.608801 GCACCCAAAGAGCCAAAATGG 60.609 52.381 0.00 0.00 41.55 3.16
4673 9771 1.070445 TGCACCCAAAGAGCCAAAATG 59.930 47.619 0.00 0.00 0.00 2.32
4674 9772 1.422531 TGCACCCAAAGAGCCAAAAT 58.577 45.000 0.00 0.00 0.00 1.82
4675 9773 1.422531 ATGCACCCAAAGAGCCAAAA 58.577 45.000 0.00 0.00 0.00 2.44
4676 9774 2.300956 TATGCACCCAAAGAGCCAAA 57.699 45.000 0.00 0.00 0.00 3.28
4677 9775 2.101783 CATATGCACCCAAAGAGCCAA 58.898 47.619 0.00 0.00 0.00 4.52
4678 9776 1.766494 CATATGCACCCAAAGAGCCA 58.234 50.000 0.00 0.00 0.00 4.75
4679 9777 0.386838 GCATATGCACCCAAAGAGCC 59.613 55.000 22.84 0.00 41.59 4.70
4680 9778 1.336125 GAGCATATGCACCCAAAGAGC 59.664 52.381 28.62 0.00 45.16 4.09
4681 9779 1.952296 GGAGCATATGCACCCAAAGAG 59.048 52.381 28.15 0.00 44.49 2.85
4682 9780 2.057137 GGAGCATATGCACCCAAAGA 57.943 50.000 28.15 0.00 44.49 2.52
4689 9787 4.136796 TGTTCATTAGGGAGCATATGCAC 58.863 43.478 28.62 22.27 45.16 4.57
4690 9788 4.141413 ACTGTTCATTAGGGAGCATATGCA 60.141 41.667 28.62 8.05 45.16 3.96
4691 9789 4.392940 ACTGTTCATTAGGGAGCATATGC 58.607 43.478 20.36 20.36 42.49 3.14
4692 9790 8.627208 ATTTACTGTTCATTAGGGAGCATATG 57.373 34.615 0.00 0.00 0.00 1.78
4693 9791 9.289782 GAATTTACTGTTCATTAGGGAGCATAT 57.710 33.333 0.00 0.00 0.00 1.78
4694 9792 8.271458 TGAATTTACTGTTCATTAGGGAGCATA 58.729 33.333 0.00 0.00 31.07 3.14
4695 9793 7.118723 TGAATTTACTGTTCATTAGGGAGCAT 58.881 34.615 0.00 0.00 31.07 3.79
4696 9794 6.480763 TGAATTTACTGTTCATTAGGGAGCA 58.519 36.000 0.00 0.00 31.07 4.26
4697 9795 7.391148 TTGAATTTACTGTTCATTAGGGAGC 57.609 36.000 0.00 0.00 35.68 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.