Multiple sequence alignment - TraesCS7B01G118400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G118400 | chr7B | 100.000 | 4756 | 0 | 0 | 1 | 4756 | 137803140 | 137798385 | 0.000000e+00 | 8783.0 |
1 | TraesCS7B01G118400 | chr7B | 92.308 | 65 | 5 | 0 | 771 | 835 | 630554955 | 630555019 | 5.070000e-15 | 93.5 |
2 | TraesCS7B01G118400 | chr7A | 91.021 | 2272 | 104 | 30 | 1984 | 4181 | 174215620 | 174213375 | 0.000000e+00 | 2974.0 |
3 | TraesCS7B01G118400 | chr7A | 91.467 | 750 | 33 | 8 | 834 | 1567 | 174216949 | 174216215 | 0.000000e+00 | 1002.0 |
4 | TraesCS7B01G118400 | chr7A | 92.124 | 419 | 32 | 1 | 1 | 419 | 636698083 | 636697666 | 1.470000e-164 | 590.0 |
5 | TraesCS7B01G118400 | chr7A | 91.732 | 254 | 17 | 2 | 1712 | 1965 | 174215996 | 174215747 | 2.720000e-92 | 350.0 |
6 | TraesCS7B01G118400 | chr7A | 87.500 | 192 | 23 | 1 | 644 | 834 | 636697652 | 636697461 | 2.230000e-53 | 220.0 |
7 | TraesCS7B01G118400 | chr7A | 94.318 | 88 | 3 | 2 | 4669 | 4756 | 596329366 | 596329451 | 2.990000e-27 | 134.0 |
8 | TraesCS7B01G118400 | chr7A | 93.976 | 83 | 4 | 1 | 4666 | 4748 | 14498142 | 14498061 | 1.800000e-24 | 124.0 |
9 | TraesCS7B01G118400 | chr7D | 92.912 | 1820 | 74 | 15 | 2042 | 3816 | 171321172 | 171319363 | 0.000000e+00 | 2595.0 |
10 | TraesCS7B01G118400 | chr7D | 90.534 | 824 | 45 | 18 | 11 | 834 | 162153320 | 162154110 | 0.000000e+00 | 1059.0 |
11 | TraesCS7B01G118400 | chr7D | 93.700 | 619 | 27 | 2 | 943 | 1561 | 171322276 | 171321670 | 0.000000e+00 | 917.0 |
12 | TraesCS7B01G118400 | chr7D | 88.934 | 488 | 38 | 9 | 4184 | 4665 | 171316972 | 171316495 | 5.300000e-164 | 588.0 |
13 | TraesCS7B01G118400 | chr7D | 90.060 | 332 | 26 | 5 | 3856 | 4181 | 171317575 | 171317245 | 1.580000e-114 | 424.0 |
14 | TraesCS7B01G118400 | chr7D | 94.096 | 271 | 11 | 2 | 1712 | 1981 | 171321441 | 171321175 | 1.590000e-109 | 407.0 |
15 | TraesCS7B01G118400 | chr7D | 84.277 | 159 | 9 | 5 | 1562 | 1716 | 171321632 | 171321486 | 1.780000e-29 | 141.0 |
16 | TraesCS7B01G118400 | chr4B | 95.569 | 835 | 20 | 4 | 1 | 835 | 37873138 | 37873955 | 0.000000e+00 | 1321.0 |
17 | TraesCS7B01G118400 | chr4B | 85.484 | 124 | 18 | 0 | 709 | 832 | 615381887 | 615382010 | 3.860000e-26 | 130.0 |
18 | TraesCS7B01G118400 | chr6D | 91.024 | 791 | 49 | 7 | 11 | 780 | 11346007 | 11346796 | 0.000000e+00 | 1048.0 |
19 | TraesCS7B01G118400 | chr6B | 92.580 | 593 | 23 | 11 | 223 | 795 | 18113109 | 18113700 | 0.000000e+00 | 832.0 |
20 | TraesCS7B01G118400 | chr6B | 96.438 | 365 | 12 | 1 | 11 | 375 | 93643678 | 93643315 | 6.810000e-168 | 601.0 |
21 | TraesCS7B01G118400 | chr6A | 89.932 | 586 | 34 | 5 | 11 | 593 | 12617536 | 12618099 | 0.000000e+00 | 732.0 |
22 | TraesCS7B01G118400 | chr6A | 90.494 | 263 | 25 | 0 | 571 | 833 | 12618039 | 12618301 | 9.800000e-92 | 348.0 |
23 | TraesCS7B01G118400 | chr6A | 84.158 | 101 | 7 | 6 | 1965 | 2056 | 108214637 | 108214737 | 6.560000e-14 | 89.8 |
24 | TraesCS7B01G118400 | chr2B | 96.438 | 365 | 13 | 0 | 11 | 375 | 734456165 | 734456529 | 1.890000e-168 | 603.0 |
25 | TraesCS7B01G118400 | chr2B | 90.385 | 260 | 25 | 0 | 2068 | 2327 | 64070439 | 64070698 | 4.560000e-90 | 342.0 |
26 | TraesCS7B01G118400 | chr2B | 90.000 | 260 | 26 | 0 | 2068 | 2327 | 64206757 | 64206498 | 2.120000e-88 | 337.0 |
27 | TraesCS7B01G118400 | chr2B | 89.231 | 260 | 28 | 0 | 2068 | 2327 | 63855040 | 63855299 | 4.590000e-85 | 326.0 |
28 | TraesCS7B01G118400 | chr2B | 83.529 | 340 | 41 | 3 | 993 | 1317 | 63849337 | 63849676 | 2.150000e-78 | 303.0 |
29 | TraesCS7B01G118400 | chr2B | 87.037 | 270 | 33 | 2 | 2059 | 2327 | 64230241 | 64229973 | 2.150000e-78 | 303.0 |
30 | TraesCS7B01G118400 | chr2B | 83.333 | 342 | 42 | 3 | 995 | 1321 | 64212615 | 64212274 | 7.740000e-78 | 302.0 |
31 | TraesCS7B01G118400 | chr2B | 89.815 | 216 | 22 | 0 | 2404 | 2619 | 63845675 | 63845890 | 1.300000e-70 | 278.0 |
32 | TraesCS7B01G118400 | chr2B | 85.130 | 269 | 40 | 0 | 997 | 1265 | 64764558 | 64764290 | 4.690000e-70 | 276.0 |
33 | TraesCS7B01G118400 | chr2B | 87.215 | 219 | 28 | 0 | 2404 | 2622 | 64229861 | 64229643 | 2.840000e-62 | 250.0 |
34 | TraesCS7B01G118400 | chr2B | 83.271 | 269 | 41 | 1 | 997 | 1265 | 63820474 | 63820738 | 1.320000e-60 | 244.0 |
35 | TraesCS7B01G118400 | chr2B | 85.517 | 145 | 19 | 2 | 2491 | 2634 | 64625736 | 64625593 | 2.960000e-32 | 150.0 |
36 | TraesCS7B01G118400 | chr2B | 85.517 | 145 | 19 | 2 | 2491 | 2634 | 64708632 | 64708489 | 2.960000e-32 | 150.0 |
37 | TraesCS7B01G118400 | chr2B | 94.505 | 91 | 4 | 1 | 4666 | 4756 | 67894078 | 67894167 | 6.420000e-29 | 139.0 |
38 | TraesCS7B01G118400 | chr2B | 90.909 | 66 | 6 | 0 | 1982 | 2047 | 447491731 | 447491666 | 6.560000e-14 | 89.8 |
39 | TraesCS7B01G118400 | chr3B | 96.164 | 365 | 13 | 1 | 11 | 375 | 451343160 | 451342797 | 3.170000e-166 | 595.0 |
40 | TraesCS7B01G118400 | chr3B | 94.915 | 59 | 3 | 0 | 1993 | 2051 | 608359247 | 608359305 | 5.070000e-15 | 93.5 |
41 | TraesCS7B01G118400 | chr3B | 92.063 | 63 | 5 | 0 | 1994 | 2056 | 40688457 | 40688519 | 6.560000e-14 | 89.8 |
42 | TraesCS7B01G118400 | chr3B | 93.333 | 60 | 4 | 0 | 1997 | 2056 | 389017095 | 389017036 | 6.560000e-14 | 89.8 |
43 | TraesCS7B01G118400 | chr1B | 80.774 | 801 | 103 | 31 | 27 | 816 | 54920736 | 54921496 | 3.190000e-161 | 579.0 |
44 | TraesCS7B01G118400 | chr1B | 80.400 | 801 | 106 | 31 | 27 | 816 | 54937686 | 54938446 | 3.210000e-156 | 562.0 |
45 | TraesCS7B01G118400 | chr1B | 92.188 | 64 | 5 | 0 | 1993 | 2056 | 177513380 | 177513317 | 1.820000e-14 | 91.6 |
46 | TraesCS7B01G118400 | chr1B | 89.706 | 68 | 3 | 4 | 767 | 832 | 7370621 | 7370686 | 3.050000e-12 | 84.2 |
47 | TraesCS7B01G118400 | chr3D | 83.516 | 546 | 62 | 9 | 45 | 588 | 489410988 | 489410469 | 7.160000e-133 | 484.0 |
48 | TraesCS7B01G118400 | chr3D | 94.444 | 90 | 4 | 1 | 4665 | 4754 | 58397537 | 58397625 | 2.310000e-28 | 137.0 |
49 | TraesCS7B01G118400 | chr2D | 84.270 | 356 | 39 | 7 | 995 | 1334 | 37028168 | 37027814 | 9.870000e-87 | 331.0 |
50 | TraesCS7B01G118400 | chr2D | 82.738 | 336 | 43 | 5 | 997 | 1317 | 37041169 | 37040834 | 7.790000e-73 | 285.0 |
51 | TraesCS7B01G118400 | chr2D | 88.584 | 219 | 25 | 0 | 2404 | 2622 | 37031012 | 37030794 | 2.820000e-67 | 267.0 |
52 | TraesCS7B01G118400 | chr2D | 86.147 | 231 | 30 | 2 | 2391 | 2620 | 37045425 | 37045196 | 1.020000e-61 | 248.0 |
53 | TraesCS7B01G118400 | chr2A | 88.846 | 260 | 29 | 0 | 2068 | 2327 | 41644182 | 41643923 | 2.140000e-83 | 320.0 |
54 | TraesCS7B01G118400 | chr2A | 86.066 | 244 | 34 | 0 | 2391 | 2634 | 41653926 | 41653683 | 3.650000e-66 | 263.0 |
55 | TraesCS7B01G118400 | chr2A | 94.505 | 91 | 4 | 1 | 4666 | 4756 | 44757375 | 44757464 | 6.420000e-29 | 139.0 |
56 | TraesCS7B01G118400 | chr5D | 81.462 | 383 | 42 | 15 | 468 | 821 | 377976261 | 377976643 | 2.170000e-73 | 287.0 |
57 | TraesCS7B01G118400 | chr5D | 94.505 | 91 | 3 | 2 | 4666 | 4756 | 375197784 | 375197872 | 6.420000e-29 | 139.0 |
58 | TraesCS7B01G118400 | chr1D | 96.667 | 90 | 2 | 1 | 4666 | 4755 | 39864704 | 39864616 | 1.070000e-31 | 148.0 |
59 | TraesCS7B01G118400 | chrUn | 93.976 | 83 | 4 | 1 | 4666 | 4748 | 81417157 | 81417238 | 1.800000e-24 | 124.0 |
60 | TraesCS7B01G118400 | chr3A | 87.356 | 87 | 6 | 3 | 4666 | 4752 | 175363188 | 175363269 | 1.410000e-15 | 95.3 |
61 | TraesCS7B01G118400 | chr1A | 94.737 | 57 | 3 | 0 | 1998 | 2054 | 243863940 | 243863996 | 6.560000e-14 | 89.8 |
62 | TraesCS7B01G118400 | chr1A | 94.118 | 51 | 3 | 0 | 2006 | 2056 | 5494121 | 5494171 | 1.420000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G118400 | chr7B | 137798385 | 137803140 | 4755 | True | 8783.000000 | 8783 | 100.000000 | 1 | 4756 | 1 | chr7B.!!$R1 | 4755 |
1 | TraesCS7B01G118400 | chr7A | 174213375 | 174216949 | 3574 | True | 1442.000000 | 2974 | 91.406667 | 834 | 4181 | 3 | chr7A.!!$R2 | 3347 |
2 | TraesCS7B01G118400 | chr7A | 636697461 | 636698083 | 622 | True | 405.000000 | 590 | 89.812000 | 1 | 834 | 2 | chr7A.!!$R3 | 833 |
3 | TraesCS7B01G118400 | chr7D | 162153320 | 162154110 | 790 | False | 1059.000000 | 1059 | 90.534000 | 11 | 834 | 1 | chr7D.!!$F1 | 823 |
4 | TraesCS7B01G118400 | chr7D | 171316495 | 171322276 | 5781 | True | 845.333333 | 2595 | 90.663167 | 943 | 4665 | 6 | chr7D.!!$R1 | 3722 |
5 | TraesCS7B01G118400 | chr4B | 37873138 | 37873955 | 817 | False | 1321.000000 | 1321 | 95.569000 | 1 | 835 | 1 | chr4B.!!$F1 | 834 |
6 | TraesCS7B01G118400 | chr6D | 11346007 | 11346796 | 789 | False | 1048.000000 | 1048 | 91.024000 | 11 | 780 | 1 | chr6D.!!$F1 | 769 |
7 | TraesCS7B01G118400 | chr6B | 18113109 | 18113700 | 591 | False | 832.000000 | 832 | 92.580000 | 223 | 795 | 1 | chr6B.!!$F1 | 572 |
8 | TraesCS7B01G118400 | chr6A | 12617536 | 12618301 | 765 | False | 540.000000 | 732 | 90.213000 | 11 | 833 | 2 | chr6A.!!$F2 | 822 |
9 | TraesCS7B01G118400 | chr2B | 63845675 | 63849676 | 4001 | False | 290.500000 | 303 | 86.672000 | 993 | 2619 | 2 | chr2B.!!$F6 | 1626 |
10 | TraesCS7B01G118400 | chr2B | 64229643 | 64230241 | 598 | True | 276.500000 | 303 | 87.126000 | 2059 | 2622 | 2 | chr2B.!!$R7 | 563 |
11 | TraesCS7B01G118400 | chr1B | 54920736 | 54921496 | 760 | False | 579.000000 | 579 | 80.774000 | 27 | 816 | 1 | chr1B.!!$F2 | 789 |
12 | TraesCS7B01G118400 | chr1B | 54937686 | 54938446 | 760 | False | 562.000000 | 562 | 80.400000 | 27 | 816 | 1 | chr1B.!!$F3 | 789 |
13 | TraesCS7B01G118400 | chr3D | 489410469 | 489410988 | 519 | True | 484.000000 | 484 | 83.516000 | 45 | 588 | 1 | chr3D.!!$R1 | 543 |
14 | TraesCS7B01G118400 | chr2D | 37027814 | 37031012 | 3198 | True | 299.000000 | 331 | 86.427000 | 995 | 2622 | 2 | chr2D.!!$R3 | 1627 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
931 | 991 | 0.243907 | AGACGTCAGACCCATCAACG | 59.756 | 55.0 | 19.50 | 0.00 | 40.29 | 4.10 | F |
1464 | 1536 | 0.240145 | TCTGCAGTAGTCGACGTTGG | 59.760 | 55.0 | 14.67 | 2.96 | 0.00 | 3.77 | F |
1523 | 1602 | 0.767446 | CCCCATCCAGCATCTCCTCT | 60.767 | 60.0 | 0.00 | 0.00 | 0.00 | 3.69 | F |
2317 | 2596 | 0.319083 | ACGTGTACGGAGATGGCAAA | 59.681 | 50.0 | 9.40 | 0.00 | 44.95 | 3.68 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2203 | 2482 | 1.448985 | CGGAAACATAGGTGTGTGGG | 58.551 | 55.000 | 0.00 | 0.00 | 38.92 | 4.61 | R |
2288 | 2567 | 3.067180 | TCTCCGTACACGTGAACTTTCTT | 59.933 | 43.478 | 25.01 | 0.00 | 37.74 | 2.52 | R |
2535 | 2871 | 3.424703 | CTGAGAGCTTTTCCCATTTGGA | 58.575 | 45.455 | 0.00 | 0.00 | 43.18 | 3.53 | R |
4267 | 9359 | 1.066716 | CCCACATTCCAATTGCAGTGG | 60.067 | 52.381 | 20.65 | 20.65 | 44.58 | 4.00 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
549 | 557 | 1.599518 | AACCGGCAAGCAACGATGA | 60.600 | 52.632 | 0.00 | 0.00 | 0.00 | 2.92 |
847 | 894 | 6.474140 | TCATCGCCCTTGTAGAAAAGTATA | 57.526 | 37.500 | 0.00 | 0.00 | 0.00 | 1.47 |
877 | 926 | 1.197721 | CTGCTTTTTGTAGGAGGCACG | 59.802 | 52.381 | 0.00 | 0.00 | 30.71 | 5.34 |
897 | 957 | 6.320171 | GCACGTCTCTAACTGAATACTACAA | 58.680 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
916 | 976 | 0.875728 | ACGAAGAGTCCACTCAGACG | 59.124 | 55.000 | 9.39 | 12.28 | 45.21 | 4.18 |
917 | 977 | 0.875728 | CGAAGAGTCCACTCAGACGT | 59.124 | 55.000 | 9.39 | 0.00 | 45.21 | 4.34 |
918 | 978 | 1.135916 | CGAAGAGTCCACTCAGACGTC | 60.136 | 57.143 | 7.70 | 7.70 | 45.21 | 4.34 |
919 | 979 | 1.880675 | GAAGAGTCCACTCAGACGTCA | 59.119 | 52.381 | 19.50 | 0.00 | 45.21 | 4.35 |
920 | 980 | 1.529226 | AGAGTCCACTCAGACGTCAG | 58.471 | 55.000 | 19.50 | 10.43 | 45.21 | 3.51 |
921 | 981 | 1.072489 | AGAGTCCACTCAGACGTCAGA | 59.928 | 52.381 | 19.50 | 14.75 | 45.21 | 3.27 |
922 | 982 | 1.198178 | GAGTCCACTCAGACGTCAGAC | 59.802 | 57.143 | 19.50 | 13.27 | 42.42 | 3.51 |
931 | 991 | 0.243907 | AGACGTCAGACCCATCAACG | 59.756 | 55.000 | 19.50 | 0.00 | 40.29 | 4.10 |
957 | 1017 | 3.414269 | ACTTTTGTACCCACATAACCCG | 58.586 | 45.455 | 0.00 | 0.00 | 33.76 | 5.28 |
1343 | 1403 | 3.091417 | GCTTAATTAACTCGCGCAACTG | 58.909 | 45.455 | 8.75 | 0.00 | 0.00 | 3.16 |
1421 | 1481 | 4.307432 | TGAGATCTTGAGAACACGGAAAC | 58.693 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
1450 | 1510 | 0.322975 | GAAGAAGCCACCTCTCTGCA | 59.677 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1459 | 1531 | 1.131504 | CACCTCTCTGCAGTAGTCGAC | 59.868 | 57.143 | 14.67 | 7.70 | 0.00 | 4.20 |
1460 | 1532 | 0.375454 | CCTCTCTGCAGTAGTCGACG | 59.625 | 60.000 | 14.67 | 0.00 | 0.00 | 5.12 |
1461 | 1533 | 1.080298 | CTCTCTGCAGTAGTCGACGT | 58.920 | 55.000 | 14.67 | 1.19 | 0.00 | 4.34 |
1462 | 1534 | 1.465387 | CTCTCTGCAGTAGTCGACGTT | 59.535 | 52.381 | 14.67 | 0.00 | 0.00 | 3.99 |
1463 | 1535 | 1.197036 | TCTCTGCAGTAGTCGACGTTG | 59.803 | 52.381 | 14.67 | 10.87 | 0.00 | 4.10 |
1464 | 1536 | 0.240145 | TCTGCAGTAGTCGACGTTGG | 59.760 | 55.000 | 14.67 | 2.96 | 0.00 | 3.77 |
1465 | 1537 | 1.344942 | CTGCAGTAGTCGACGTTGGC | 61.345 | 60.000 | 10.46 | 13.39 | 0.00 | 4.52 |
1466 | 1538 | 2.434134 | GCAGTAGTCGACGTTGGCG | 61.434 | 63.158 | 10.46 | 0.00 | 44.93 | 5.69 |
1467 | 1539 | 1.208358 | CAGTAGTCGACGTTGGCGA | 59.792 | 57.895 | 10.46 | 0.00 | 42.00 | 5.54 |
1523 | 1602 | 0.767446 | CCCCATCCAGCATCTCCTCT | 60.767 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1548 | 1627 | 2.036346 | ACAAATTCCCTGAAGCAACTGC | 59.964 | 45.455 | 0.00 | 0.00 | 42.49 | 4.40 |
1596 | 1712 | 2.357327 | TCACATGTTTCCGGTACTCG | 57.643 | 50.000 | 0.00 | 0.00 | 38.88 | 4.18 |
1612 | 1728 | 1.546476 | ACTCGGCAGGTTCAGACTAAG | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 2.18 |
1676 | 1792 | 4.036380 | AGTTGCCAAGTTGCTTTAGTACAC | 59.964 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1688 | 1804 | 6.727215 | TGCTTTAGTACACCCGTTTAAAAAG | 58.273 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
1729 | 1896 | 1.302033 | CATCATGGCTACCGAGGGC | 60.302 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
1764 | 1931 | 0.868406 | CTCGTTGTCAGGTTTGAGGC | 59.132 | 55.000 | 0.00 | 0.00 | 32.98 | 4.70 |
1856 | 2023 | 5.461032 | TGAGAGGAAGAGAGAAAGTGAAC | 57.539 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1861 | 2028 | 4.835615 | AGGAAGAGAGAAAGTGAACTGCTA | 59.164 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
1862 | 2029 | 5.047377 | AGGAAGAGAGAAAGTGAACTGCTAG | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 3.42 |
1863 | 2030 | 4.799564 | AGAGAGAAAGTGAACTGCTAGG | 57.200 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2016 | 2295 | 7.821595 | CACATTTTAGTGTTAGATACGTCCA | 57.178 | 36.000 | 0.00 | 0.00 | 34.83 | 4.02 |
2040 | 2319 | 9.703892 | CCATATCTAGACAAATCTAAGACAAGG | 57.296 | 37.037 | 0.00 | 0.00 | 36.98 | 3.61 |
2203 | 2482 | 4.400567 | AGGGCAATAGAAGAAGCAAACATC | 59.599 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2287 | 2566 | 3.330720 | ACCCTTCTCCCGCCCAAG | 61.331 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
2288 | 2567 | 3.009115 | CCCTTCTCCCGCCCAAGA | 61.009 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2317 | 2596 | 0.319083 | ACGTGTACGGAGATGGCAAA | 59.681 | 50.000 | 9.40 | 0.00 | 44.95 | 3.68 |
2535 | 2871 | 7.395489 | ACATCCTTAGTCAAAATGAGCTGATTT | 59.605 | 33.333 | 5.21 | 5.21 | 0.00 | 2.17 |
2635 | 2971 | 9.163899 | GGAAGGTAAGAAAGAATCGTCTATTTT | 57.836 | 33.333 | 0.00 | 0.00 | 32.16 | 1.82 |
2775 | 3136 | 2.350772 | GGTACAATGGCATTATGAGCGC | 60.351 | 50.000 | 13.23 | 0.00 | 0.00 | 5.92 |
2790 | 3151 | 3.896122 | TGAGCGCTCAATTGTTTTTACC | 58.104 | 40.909 | 36.62 | 6.84 | 36.53 | 2.85 |
2900 | 3302 | 5.887754 | AGGAATGCTCTTTTACCACCTAAA | 58.112 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
3022 | 3514 | 5.739161 | CAGCGCTAACATGAAAAGATAAACC | 59.261 | 40.000 | 10.99 | 0.00 | 0.00 | 3.27 |
3215 | 3716 | 4.578516 | TGTGTAGTCAAACTTCACCATTGG | 59.421 | 41.667 | 12.42 | 0.00 | 43.22 | 3.16 |
3220 | 3721 | 7.604927 | TGTAGTCAAACTTCACCATTGGTATAC | 59.395 | 37.037 | 8.31 | 0.00 | 32.11 | 1.47 |
3221 | 3722 | 6.539173 | AGTCAAACTTCACCATTGGTATACA | 58.461 | 36.000 | 8.31 | 0.00 | 32.11 | 2.29 |
3563 | 4307 | 8.196771 | AGTTTACTCAATTGACAAGCAAATTCA | 58.803 | 29.630 | 3.38 | 0.00 | 40.48 | 2.57 |
3641 | 4420 | 1.416030 | GGGCACTTCCACCACATTTTT | 59.584 | 47.619 | 0.00 | 0.00 | 36.21 | 1.94 |
3660 | 4439 | 5.452078 | TTTTTATGAGGGTTGCTCAACAG | 57.548 | 39.130 | 13.89 | 0.00 | 42.85 | 3.16 |
3793 | 4575 | 4.203654 | ACCTTAACTGCCTTACTAGCAC | 57.796 | 45.455 | 0.00 | 0.00 | 36.01 | 4.40 |
3986 | 8806 | 8.575649 | AGTGGTTTTATATTCGTGAGGAAAAT | 57.424 | 30.769 | 0.00 | 0.00 | 38.36 | 1.82 |
4001 | 8822 | 6.148976 | GTGAGGAAAATAAGGGTTCACTACAC | 59.851 | 42.308 | 0.00 | 0.00 | 32.79 | 2.90 |
4173 | 8995 | 3.191669 | TGTGTTGTACTTGTCTTGTCCG | 58.808 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
4181 | 9003 | 1.665679 | CTTGTCTTGTCCGCGCATATT | 59.334 | 47.619 | 8.75 | 0.00 | 0.00 | 1.28 |
4182 | 9004 | 1.006086 | TGTCTTGTCCGCGCATATTG | 58.994 | 50.000 | 8.75 | 0.00 | 0.00 | 1.90 |
4232 | 9324 | 2.364324 | TGTACTTGTATCATCTCCGGGC | 59.636 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4235 | 9327 | 0.758734 | TTGTATCATCTCCGGGCTGG | 59.241 | 55.000 | 5.83 | 5.83 | 40.09 | 4.85 |
4246 | 9338 | 3.935818 | TCCGGGCTGGAAAATGTAATA | 57.064 | 42.857 | 14.03 | 0.00 | 46.38 | 0.98 |
4253 | 9345 | 7.138736 | CGGGCTGGAAAATGTAATAACTAATG | 58.861 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
4278 | 9370 | 7.446319 | TGATAGATAGATTTCCCACTGCAATTG | 59.554 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
4285 | 9377 | 1.894466 | TCCCACTGCAATTGGAATGTG | 59.106 | 47.619 | 14.46 | 9.54 | 36.02 | 3.21 |
4296 | 9388 | 1.904287 | TGGAATGTGGGTTGCAGTAC | 58.096 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4303 | 9395 | 2.969950 | TGTGGGTTGCAGTACTTAGAGT | 59.030 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
4305 | 9397 | 4.775780 | TGTGGGTTGCAGTACTTAGAGTAT | 59.224 | 41.667 | 0.00 | 0.00 | 32.65 | 2.12 |
4336 | 9429 | 1.681229 | TCCCTAAATCCACCAAGCCT | 58.319 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
4340 | 9433 | 4.044825 | TCCCTAAATCCACCAAGCCTTTAA | 59.955 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
4347 | 9440 | 3.639561 | TCCACCAAGCCTTTAAGAAAACC | 59.360 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
4349 | 9442 | 2.035449 | ACCAAGCCTTTAAGAAAACCGC | 59.965 | 45.455 | 0.00 | 0.00 | 0.00 | 5.68 |
4409 | 9506 | 7.176589 | ACCATCAAACTAAGTCAACCAAAAA | 57.823 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
4438 | 9535 | 3.305064 | GGCAGATCTAACTGACCTCGATC | 60.305 | 52.174 | 0.00 | 0.00 | 39.76 | 3.69 |
4450 | 9547 | 3.772572 | TGACCTCGATCATTAAACCAGGA | 59.227 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
4454 | 9551 | 4.332819 | CCTCGATCATTAAACCAGGACAAC | 59.667 | 45.833 | 0.00 | 0.00 | 0.00 | 3.32 |
4458 | 9555 | 3.492337 | TCATTAAACCAGGACAACCCAC | 58.508 | 45.455 | 0.00 | 0.00 | 37.41 | 4.61 |
4478 | 9575 | 3.502211 | CACCGACCTAAATTGCTTCAGTT | 59.498 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
4479 | 9576 | 3.751698 | ACCGACCTAAATTGCTTCAGTTC | 59.248 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
4480 | 9577 | 3.751175 | CCGACCTAAATTGCTTCAGTTCA | 59.249 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
4481 | 9578 | 4.142816 | CCGACCTAAATTGCTTCAGTTCAG | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
4482 | 9579 | 4.452455 | CGACCTAAATTGCTTCAGTTCAGT | 59.548 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4484 | 9581 | 4.520492 | ACCTAAATTGCTTCAGTTCAGTGG | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
4485 | 9582 | 4.520492 | CCTAAATTGCTTCAGTTCAGTGGT | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
4486 | 9583 | 3.996150 | AATTGCTTCAGTTCAGTGGTG | 57.004 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
4487 | 9584 | 2.708216 | TTGCTTCAGTTCAGTGGTGA | 57.292 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4488 | 9585 | 2.245159 | TGCTTCAGTTCAGTGGTGAG | 57.755 | 50.000 | 0.00 | 0.00 | 32.98 | 3.51 |
4489 | 9586 | 1.486310 | TGCTTCAGTTCAGTGGTGAGT | 59.514 | 47.619 | 0.00 | 0.00 | 32.98 | 3.41 |
4508 | 9605 | 6.968904 | GGTGAGTGCTCAACATATTTAATGTG | 59.031 | 38.462 | 11.94 | 0.13 | 46.18 | 3.21 |
4553 | 9650 | 6.838198 | TTACCGTCAATGCTAATCACATAC | 57.162 | 37.500 | 0.00 | 0.00 | 0.00 | 2.39 |
4555 | 9652 | 6.156748 | ACCGTCAATGCTAATCACATACTA | 57.843 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
4650 | 9748 | 6.473778 | GCACGCACATATCTCATATACCTAAG | 59.526 | 42.308 | 0.00 | 0.00 | 0.00 | 2.18 |
4662 | 9760 | 8.059461 | TCTCATATACCTAAGAAGTTCACCTCA | 58.941 | 37.037 | 5.50 | 0.00 | 0.00 | 3.86 |
4663 | 9761 | 8.008513 | TCATATACCTAAGAAGTTCACCTCAC | 57.991 | 38.462 | 5.50 | 0.00 | 0.00 | 3.51 |
4664 | 9762 | 5.678955 | ATACCTAAGAAGTTCACCTCACC | 57.321 | 43.478 | 5.50 | 0.00 | 0.00 | 4.02 |
4665 | 9763 | 2.299297 | ACCTAAGAAGTTCACCTCACCG | 59.701 | 50.000 | 5.50 | 0.00 | 0.00 | 4.94 |
4666 | 9764 | 2.353803 | CCTAAGAAGTTCACCTCACCGG | 60.354 | 54.545 | 0.00 | 0.00 | 39.35 | 5.28 |
4667 | 9765 | 0.396811 | AAGAAGTTCACCTCACCGGG | 59.603 | 55.000 | 6.32 | 0.00 | 36.97 | 5.73 |
4668 | 9766 | 0.471211 | AGAAGTTCACCTCACCGGGA | 60.471 | 55.000 | 6.32 | 0.00 | 36.97 | 5.14 |
4669 | 9767 | 0.037232 | GAAGTTCACCTCACCGGGAG | 60.037 | 60.000 | 6.32 | 9.77 | 43.65 | 4.30 |
4681 | 9779 | 3.603365 | CGGGAGGACCATTTTGGC | 58.397 | 61.111 | 0.00 | 0.00 | 42.67 | 4.52 |
4682 | 9780 | 1.000896 | CGGGAGGACCATTTTGGCT | 60.001 | 57.895 | 0.00 | 0.00 | 42.67 | 4.75 |
4683 | 9781 | 1.032114 | CGGGAGGACCATTTTGGCTC | 61.032 | 60.000 | 0.00 | 0.00 | 42.67 | 4.70 |
4684 | 9782 | 0.332972 | GGGAGGACCATTTTGGCTCT | 59.667 | 55.000 | 0.00 | 0.00 | 42.67 | 4.09 |
4685 | 9783 | 1.272704 | GGGAGGACCATTTTGGCTCTT | 60.273 | 52.381 | 0.00 | 0.00 | 42.67 | 2.85 |
4686 | 9784 | 2.529632 | GGAGGACCATTTTGGCTCTTT | 58.470 | 47.619 | 0.00 | 0.00 | 42.67 | 2.52 |
4687 | 9785 | 2.232208 | GGAGGACCATTTTGGCTCTTTG | 59.768 | 50.000 | 0.00 | 0.00 | 42.67 | 2.77 |
4688 | 9786 | 2.232208 | GAGGACCATTTTGGCTCTTTGG | 59.768 | 50.000 | 0.00 | 0.00 | 42.67 | 3.28 |
4689 | 9787 | 1.276138 | GGACCATTTTGGCTCTTTGGG | 59.724 | 52.381 | 0.00 | 0.00 | 42.67 | 4.12 |
4690 | 9788 | 1.970640 | GACCATTTTGGCTCTTTGGGT | 59.029 | 47.619 | 0.00 | 0.00 | 42.67 | 4.51 |
4691 | 9789 | 1.693606 | ACCATTTTGGCTCTTTGGGTG | 59.306 | 47.619 | 0.00 | 0.00 | 42.67 | 4.61 |
4692 | 9790 | 1.608801 | CCATTTTGGCTCTTTGGGTGC | 60.609 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
4693 | 9791 | 1.070445 | CATTTTGGCTCTTTGGGTGCA | 59.930 | 47.619 | 0.00 | 0.00 | 36.29 | 4.57 |
4694 | 9792 | 1.422531 | TTTTGGCTCTTTGGGTGCAT | 58.577 | 45.000 | 0.00 | 0.00 | 36.29 | 3.96 |
4695 | 9793 | 2.300956 | TTTGGCTCTTTGGGTGCATA | 57.699 | 45.000 | 0.00 | 0.00 | 36.29 | 3.14 |
4696 | 9794 | 2.530460 | TTGGCTCTTTGGGTGCATAT | 57.470 | 45.000 | 0.00 | 0.00 | 36.29 | 1.78 |
4697 | 9795 | 1.766494 | TGGCTCTTTGGGTGCATATG | 58.234 | 50.000 | 0.00 | 0.00 | 36.29 | 1.78 |
4698 | 9796 | 0.386838 | GGCTCTTTGGGTGCATATGC | 59.613 | 55.000 | 21.09 | 21.09 | 42.50 | 3.14 |
4699 | 9797 | 1.396653 | GCTCTTTGGGTGCATATGCT | 58.603 | 50.000 | 27.13 | 0.00 | 42.66 | 3.79 |
4700 | 9798 | 1.336125 | GCTCTTTGGGTGCATATGCTC | 59.664 | 52.381 | 27.13 | 23.05 | 42.66 | 4.26 |
4708 | 9806 | 3.423539 | GGTGCATATGCTCCCTAATGA | 57.576 | 47.619 | 30.27 | 6.05 | 46.01 | 2.57 |
4709 | 9807 | 3.754965 | GGTGCATATGCTCCCTAATGAA | 58.245 | 45.455 | 30.27 | 5.34 | 46.01 | 2.57 |
4710 | 9808 | 3.503748 | GGTGCATATGCTCCCTAATGAAC | 59.496 | 47.826 | 30.27 | 15.84 | 46.01 | 3.18 |
4711 | 9809 | 4.136796 | GTGCATATGCTCCCTAATGAACA | 58.863 | 43.478 | 27.13 | 0.26 | 42.66 | 3.18 |
4712 | 9810 | 4.214971 | GTGCATATGCTCCCTAATGAACAG | 59.785 | 45.833 | 27.13 | 0.00 | 42.66 | 3.16 |
4713 | 9811 | 4.141413 | TGCATATGCTCCCTAATGAACAGT | 60.141 | 41.667 | 27.13 | 0.00 | 42.66 | 3.55 |
4714 | 9812 | 5.071653 | TGCATATGCTCCCTAATGAACAGTA | 59.928 | 40.000 | 27.13 | 0.00 | 42.66 | 2.74 |
4715 | 9813 | 5.997746 | GCATATGCTCCCTAATGAACAGTAA | 59.002 | 40.000 | 20.64 | 0.00 | 38.21 | 2.24 |
4716 | 9814 | 6.486657 | GCATATGCTCCCTAATGAACAGTAAA | 59.513 | 38.462 | 20.64 | 0.00 | 38.21 | 2.01 |
4717 | 9815 | 7.175641 | GCATATGCTCCCTAATGAACAGTAAAT | 59.824 | 37.037 | 20.64 | 0.00 | 38.21 | 1.40 |
4718 | 9816 | 9.071276 | CATATGCTCCCTAATGAACAGTAAATT | 57.929 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4719 | 9817 | 7.573968 | ATGCTCCCTAATGAACAGTAAATTC | 57.426 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4720 | 9818 | 6.480763 | TGCTCCCTAATGAACAGTAAATTCA | 58.519 | 36.000 | 0.00 | 0.00 | 40.25 | 2.57 |
4721 | 9819 | 6.945435 | TGCTCCCTAATGAACAGTAAATTCAA | 59.055 | 34.615 | 0.00 | 0.00 | 39.43 | 2.69 |
4722 | 9820 | 7.450014 | TGCTCCCTAATGAACAGTAAATTCAAA | 59.550 | 33.333 | 0.00 | 0.00 | 39.43 | 2.69 |
4723 | 9821 | 8.303876 | GCTCCCTAATGAACAGTAAATTCAAAA | 58.696 | 33.333 | 0.00 | 0.00 | 39.43 | 2.44 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
490 | 497 | 2.506061 | CGCTCCTCCCTATGCAGCT | 61.506 | 63.158 | 0.00 | 0.00 | 0.00 | 4.24 |
637 | 683 | 1.004440 | GGAGAGCTTGAAGCACCGT | 60.004 | 57.895 | 20.45 | 0.00 | 45.56 | 4.83 |
847 | 894 | 7.288810 | TCCTACAAAAAGCAGACATGAAAAT | 57.711 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
866 | 915 | 2.097791 | CAGTTAGAGACGTGCCTCCTAC | 59.902 | 54.545 | 0.00 | 0.00 | 33.76 | 3.18 |
877 | 926 | 8.449397 | TCTTCGTTGTAGTATTCAGTTAGAGAC | 58.551 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
897 | 957 | 0.875728 | CGTCTGAGTGGACTCTTCGT | 59.124 | 55.000 | 8.24 | 0.00 | 43.25 | 3.85 |
916 | 976 | 2.163818 | TCAACGTTGATGGGTCTGAC | 57.836 | 50.000 | 26.53 | 0.00 | 31.01 | 3.51 |
917 | 977 | 2.104111 | AGTTCAACGTTGATGGGTCTGA | 59.896 | 45.455 | 30.10 | 11.18 | 37.00 | 3.27 |
918 | 978 | 2.494059 | AGTTCAACGTTGATGGGTCTG | 58.506 | 47.619 | 30.10 | 1.41 | 37.00 | 3.51 |
919 | 979 | 2.930826 | AGTTCAACGTTGATGGGTCT | 57.069 | 45.000 | 30.10 | 19.07 | 37.00 | 3.85 |
920 | 980 | 3.982576 | AAAGTTCAACGTTGATGGGTC | 57.017 | 42.857 | 30.10 | 17.43 | 37.00 | 4.46 |
921 | 981 | 3.445805 | ACAAAAGTTCAACGTTGATGGGT | 59.554 | 39.130 | 30.10 | 18.72 | 37.00 | 4.51 |
922 | 982 | 4.040445 | ACAAAAGTTCAACGTTGATGGG | 57.960 | 40.909 | 30.10 | 18.15 | 37.00 | 4.00 |
931 | 991 | 6.210796 | GGTTATGTGGGTACAAAAGTTCAAC | 58.789 | 40.000 | 0.00 | 0.00 | 40.84 | 3.18 |
1143 | 1203 | 1.061799 | CATGCGCTTTGAACGACAGC | 61.062 | 55.000 | 9.73 | 0.00 | 0.00 | 4.40 |
1421 | 1481 | 0.250234 | TGGCTTCTTCCCAGTCGATG | 59.750 | 55.000 | 0.00 | 0.00 | 0.00 | 3.84 |
1450 | 1510 | 3.659334 | TCGCCAACGTCGACTACT | 58.341 | 55.556 | 14.70 | 0.00 | 41.18 | 2.57 |
1460 | 1532 | 4.364409 | GACGCCGTTGTCGCCAAC | 62.364 | 66.667 | 0.00 | 0.00 | 46.09 | 3.77 |
1461 | 1533 | 4.893601 | TGACGCCGTTGTCGCCAA | 62.894 | 61.111 | 0.00 | 0.00 | 41.87 | 4.52 |
1465 | 1537 | 3.103911 | GAGGTGACGCCGTTGTCG | 61.104 | 66.667 | 0.00 | 0.00 | 41.87 | 4.35 |
1466 | 1538 | 2.022129 | CAGAGGTGACGCCGTTGTC | 61.022 | 63.158 | 0.00 | 0.00 | 43.70 | 3.18 |
1467 | 1539 | 1.457823 | TACAGAGGTGACGCCGTTGT | 61.458 | 55.000 | 17.64 | 17.64 | 43.70 | 3.32 |
1468 | 1540 | 0.108804 | ATACAGAGGTGACGCCGTTG | 60.109 | 55.000 | 0.00 | 4.94 | 43.70 | 4.10 |
1469 | 1541 | 0.172803 | GATACAGAGGTGACGCCGTT | 59.827 | 55.000 | 0.00 | 0.00 | 43.70 | 4.44 |
1476 | 1548 | 3.033909 | CCATGGAGTGATACAGAGGTGA | 58.966 | 50.000 | 5.56 | 0.00 | 0.00 | 4.02 |
1507 | 1586 | 3.133542 | TGTTACAGAGGAGATGCTGGATG | 59.866 | 47.826 | 0.00 | 0.00 | 36.47 | 3.51 |
1508 | 1587 | 3.378512 | TGTTACAGAGGAGATGCTGGAT | 58.621 | 45.455 | 0.00 | 0.00 | 36.47 | 3.41 |
1509 | 1588 | 2.820178 | TGTTACAGAGGAGATGCTGGA | 58.180 | 47.619 | 0.00 | 0.00 | 36.47 | 3.86 |
1510 | 1589 | 3.616956 | TTGTTACAGAGGAGATGCTGG | 57.383 | 47.619 | 0.00 | 0.00 | 36.47 | 4.85 |
1511 | 1590 | 5.065731 | GGAATTTGTTACAGAGGAGATGCTG | 59.934 | 44.000 | 0.00 | 0.00 | 38.10 | 4.41 |
1512 | 1591 | 5.189180 | GGAATTTGTTACAGAGGAGATGCT | 58.811 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
1513 | 1592 | 4.336713 | GGGAATTTGTTACAGAGGAGATGC | 59.663 | 45.833 | 0.00 | 0.00 | 0.00 | 3.91 |
1514 | 1593 | 5.587844 | CAGGGAATTTGTTACAGAGGAGATG | 59.412 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1523 | 1602 | 4.892934 | AGTTGCTTCAGGGAATTTGTTACA | 59.107 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
1548 | 1627 | 9.512588 | AATCAGTGCCAGATATCTTAATAAAGG | 57.487 | 33.333 | 1.33 | 0.40 | 33.22 | 3.11 |
1596 | 1712 | 3.263261 | GCTTACTTAGTCTGAACCTGCC | 58.737 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1633 | 1749 | 8.773645 | GGCAACTTTATTCTTGCATTTTTAGTT | 58.226 | 29.630 | 4.87 | 0.00 | 43.89 | 2.24 |
1634 | 1750 | 7.930865 | TGGCAACTTTATTCTTGCATTTTTAGT | 59.069 | 29.630 | 4.87 | 0.00 | 43.89 | 2.24 |
1635 | 1751 | 8.309163 | TGGCAACTTTATTCTTGCATTTTTAG | 57.691 | 30.769 | 4.87 | 0.00 | 43.89 | 1.85 |
1676 | 1792 | 8.481641 | CGAAATTCTTTAACCTTTTTAAACGGG | 58.518 | 33.333 | 5.24 | 6.03 | 0.00 | 5.28 |
1729 | 1896 | 3.121738 | ACGAGGTTTTCTTGGGTACAG | 57.878 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
1764 | 1931 | 8.494016 | ACTTTTAAGGTCTCCGAATGAATAAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
1808 | 1975 | 6.058183 | GTCCTGACACCAAATTCAGCTATAT | 58.942 | 40.000 | 0.00 | 0.00 | 38.36 | 0.86 |
1813 | 1980 | 2.229792 | TGTCCTGACACCAAATTCAGC | 58.770 | 47.619 | 0.00 | 0.00 | 38.36 | 4.26 |
1856 | 2023 | 5.598830 | TCCAAACTTATAGTCCTCCTAGCAG | 59.401 | 44.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1861 | 2028 | 7.757242 | AAGAATCCAAACTTATAGTCCTCCT | 57.243 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1862 | 2029 | 8.268605 | AGAAAGAATCCAAACTTATAGTCCTCC | 58.731 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1863 | 2030 | 9.674068 | AAGAAAGAATCCAAACTTATAGTCCTC | 57.326 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
2005 | 2284 | 9.961264 | AGATTTGTCTAGATATGGACGTATCTA | 57.039 | 33.333 | 16.39 | 16.39 | 40.79 | 1.98 |
2014 | 2293 | 9.703892 | CCTTGTCTTAGATTTGTCTAGATATGG | 57.296 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2030 | 2309 | 3.689649 | CCGTCCCAAATTCCTTGTCTTAG | 59.310 | 47.826 | 0.00 | 0.00 | 32.65 | 2.18 |
2039 | 2318 | 2.793288 | TTACCTCCGTCCCAAATTCC | 57.207 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2040 | 2319 | 9.901172 | ATATTATATTACCTCCGTCCCAAATTC | 57.099 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2045 | 2324 | 8.898303 | TGTAATATTATATTACCTCCGTCCCA | 57.102 | 34.615 | 24.08 | 7.14 | 34.51 | 4.37 |
2203 | 2482 | 1.448985 | CGGAAACATAGGTGTGTGGG | 58.551 | 55.000 | 0.00 | 0.00 | 38.92 | 4.61 |
2287 | 2566 | 3.374745 | TCCGTACACGTGAACTTTCTTC | 58.625 | 45.455 | 25.01 | 0.00 | 37.74 | 2.87 |
2288 | 2567 | 3.067180 | TCTCCGTACACGTGAACTTTCTT | 59.933 | 43.478 | 25.01 | 0.00 | 37.74 | 2.52 |
2317 | 2596 | 9.520515 | AAATGTTCATAGTTATGACCTTTGACT | 57.479 | 29.630 | 1.41 | 0.00 | 42.00 | 3.41 |
2402 | 2738 | 5.852827 | TCGTCCATGAATATCACTGCATAA | 58.147 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
2535 | 2871 | 3.424703 | CTGAGAGCTTTTCCCATTTGGA | 58.575 | 45.455 | 0.00 | 0.00 | 43.18 | 3.53 |
2746 | 3107 | 9.507329 | CTCATAATGCCATTGTACCTACTAATT | 57.493 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2775 | 3136 | 9.528018 | ACTTTGTACATGGTAAAAACAATTGAG | 57.472 | 29.630 | 13.59 | 0.00 | 30.76 | 3.02 |
2852 | 3213 | 6.472016 | TCAAGAGAAGTGTAACATAATGCCA | 58.528 | 36.000 | 0.00 | 0.00 | 41.43 | 4.92 |
2900 | 3302 | 5.473504 | GTGGACAAGAGGATAACATGTGTTT | 59.526 | 40.000 | 0.00 | 0.00 | 39.31 | 2.83 |
3259 | 3921 | 5.622770 | GGTCATGACCGATTTAGTTTTGT | 57.377 | 39.130 | 28.52 | 0.00 | 42.29 | 2.83 |
3563 | 4307 | 8.803235 | TCATACAAGTAGAATAGTGTCAACTGT | 58.197 | 33.333 | 0.00 | 0.00 | 37.19 | 3.55 |
3660 | 4439 | 6.951198 | TCTCCATCCTCCTCTATATCAAAGTC | 59.049 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
3793 | 4575 | 2.161855 | ACATATGTGGTGTGCAAGGTG | 58.838 | 47.619 | 7.78 | 0.00 | 0.00 | 4.00 |
3922 | 8738 | 1.542915 | GACACATGTGGCAAGCAATCT | 59.457 | 47.619 | 27.13 | 2.08 | 38.82 | 2.40 |
3956 | 8776 | 7.881232 | TCCTCACGAATATAAAACCACTTCTTT | 59.119 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3986 | 8806 | 5.104693 | CCATATGTGGTGTAGTGAACCCTTA | 60.105 | 44.000 | 0.00 | 0.00 | 40.83 | 2.69 |
4171 | 8993 | 5.211454 | TCATTACAAATTCAATATGCGCGG | 58.789 | 37.500 | 8.83 | 0.00 | 0.00 | 6.46 |
4173 | 8995 | 6.346040 | GGCTTCATTACAAATTCAATATGCGC | 60.346 | 38.462 | 0.00 | 0.00 | 0.00 | 6.09 |
4181 | 9003 | 9.368674 | CATACAATTGGCTTCATTACAAATTCA | 57.631 | 29.630 | 10.83 | 0.00 | 0.00 | 2.57 |
4182 | 9004 | 9.369904 | ACATACAATTGGCTTCATTACAAATTC | 57.630 | 29.630 | 10.83 | 0.00 | 0.00 | 2.17 |
4253 | 9345 | 7.094463 | CCAATTGCAGTGGGAAATCTATCTATC | 60.094 | 40.741 | 10.05 | 0.00 | 32.03 | 2.08 |
4267 | 9359 | 1.066716 | CCCACATTCCAATTGCAGTGG | 60.067 | 52.381 | 20.65 | 20.65 | 44.58 | 4.00 |
4278 | 9370 | 2.200373 | AGTACTGCAACCCACATTCC | 57.800 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4285 | 9377 | 5.221283 | GGAGATACTCTAAGTACTGCAACCC | 60.221 | 48.000 | 0.00 | 0.00 | 32.84 | 4.11 |
4296 | 9388 | 8.893563 | AGGGAATCTATTGGAGATACTCTAAG | 57.106 | 38.462 | 0.00 | 0.00 | 44.68 | 2.18 |
4303 | 9395 | 8.826765 | GTGGATTTAGGGAATCTATTGGAGATA | 58.173 | 37.037 | 0.00 | 0.00 | 44.68 | 1.98 |
4305 | 9397 | 6.044404 | GGTGGATTTAGGGAATCTATTGGAGA | 59.956 | 42.308 | 0.00 | 0.00 | 43.08 | 3.71 |
4309 | 9402 | 6.015940 | GCTTGGTGGATTTAGGGAATCTATTG | 60.016 | 42.308 | 0.00 | 0.00 | 43.08 | 1.90 |
4336 | 9429 | 7.858879 | GTCTTTATGTTGAGCGGTTTTCTTAAA | 59.141 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
4340 | 9433 | 5.063880 | AGTCTTTATGTTGAGCGGTTTTCT | 58.936 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
4347 | 9440 | 3.865745 | CACCCTAGTCTTTATGTTGAGCG | 59.134 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
4349 | 9442 | 4.832248 | TGCACCCTAGTCTTTATGTTGAG | 58.168 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
4409 | 9506 | 5.013599 | AGGTCAGTTAGATCTGCCTCTTTTT | 59.986 | 40.000 | 5.18 | 0.00 | 35.99 | 1.94 |
4427 | 9524 | 4.122776 | CCTGGTTTAATGATCGAGGTCAG | 58.877 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
4438 | 9535 | 2.560981 | GGTGGGTTGTCCTGGTTTAATG | 59.439 | 50.000 | 0.00 | 0.00 | 36.20 | 1.90 |
4450 | 9547 | 2.510613 | CAATTTAGGTCGGTGGGTTGT | 58.489 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
4454 | 9551 | 1.743394 | GAAGCAATTTAGGTCGGTGGG | 59.257 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
4458 | 9555 | 3.751175 | TGAACTGAAGCAATTTAGGTCGG | 59.249 | 43.478 | 0.00 | 0.00 | 29.55 | 4.79 |
4478 | 9575 | 0.829990 | TGTTGAGCACTCACCACTGA | 59.170 | 50.000 | 0.00 | 0.00 | 39.66 | 3.41 |
4479 | 9576 | 1.888215 | ATGTTGAGCACTCACCACTG | 58.112 | 50.000 | 0.00 | 0.00 | 39.66 | 3.66 |
4480 | 9577 | 3.988976 | ATATGTTGAGCACTCACCACT | 57.011 | 42.857 | 0.00 | 0.00 | 39.66 | 4.00 |
4481 | 9578 | 6.494893 | TTAAATATGTTGAGCACTCACCAC | 57.505 | 37.500 | 0.00 | 0.00 | 39.66 | 4.16 |
4482 | 9579 | 6.658816 | ACATTAAATATGTTGAGCACTCACCA | 59.341 | 34.615 | 0.00 | 0.00 | 39.66 | 4.17 |
4484 | 9581 | 6.470235 | GCACATTAAATATGTTGAGCACTCAC | 59.530 | 38.462 | 0.00 | 0.00 | 39.66 | 3.51 |
4485 | 9582 | 6.150809 | TGCACATTAAATATGTTGAGCACTCA | 59.849 | 34.615 | 0.00 | 0.00 | 37.91 | 3.41 |
4486 | 9583 | 6.554419 | TGCACATTAAATATGTTGAGCACTC | 58.446 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4487 | 9584 | 6.513806 | TGCACATTAAATATGTTGAGCACT | 57.486 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
4488 | 9585 | 7.760131 | ATTGCACATTAAATATGTTGAGCAC | 57.240 | 32.000 | 0.00 | 0.00 | 31.27 | 4.40 |
4489 | 9586 | 9.866798 | TTAATTGCACATTAAATATGTTGAGCA | 57.133 | 25.926 | 9.96 | 0.00 | 30.15 | 4.26 |
4531 | 9628 | 6.156748 | AGTATGTGATTAGCATTGACGGTA | 57.843 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
4533 | 9630 | 7.658179 | ATTAGTATGTGATTAGCATTGACGG | 57.342 | 36.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4603 | 9701 | 7.446001 | TGCAACACACATTGATAATAGACAA | 57.554 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4650 | 9748 | 0.037232 | CTCCCGGTGAGGTGAACTTC | 60.037 | 60.000 | 11.05 | 0.00 | 37.45 | 3.01 |
4660 | 9758 | 0.037590 | CAAAATGGTCCTCCCGGTGA | 59.962 | 55.000 | 0.00 | 0.00 | 35.15 | 4.02 |
4662 | 9760 | 1.382629 | CCAAAATGGTCCTCCCGGT | 59.617 | 57.895 | 0.00 | 0.00 | 35.15 | 5.28 |
4663 | 9761 | 2.052104 | GCCAAAATGGTCCTCCCGG | 61.052 | 63.158 | 0.00 | 0.00 | 40.46 | 5.73 |
4664 | 9762 | 1.000896 | AGCCAAAATGGTCCTCCCG | 60.001 | 57.895 | 0.00 | 0.00 | 40.46 | 5.14 |
4665 | 9763 | 0.332972 | AGAGCCAAAATGGTCCTCCC | 59.667 | 55.000 | 0.00 | 0.00 | 40.46 | 4.30 |
4666 | 9764 | 2.222227 | AAGAGCCAAAATGGTCCTCC | 57.778 | 50.000 | 0.00 | 0.00 | 40.46 | 4.30 |
4667 | 9765 | 2.232208 | CCAAAGAGCCAAAATGGTCCTC | 59.768 | 50.000 | 0.00 | 0.00 | 40.46 | 3.71 |
4668 | 9766 | 2.250924 | CCAAAGAGCCAAAATGGTCCT | 58.749 | 47.619 | 0.00 | 0.00 | 40.46 | 3.85 |
4669 | 9767 | 1.276138 | CCCAAAGAGCCAAAATGGTCC | 59.724 | 52.381 | 0.00 | 0.00 | 40.46 | 4.46 |
4670 | 9768 | 1.970640 | ACCCAAAGAGCCAAAATGGTC | 59.029 | 47.619 | 0.00 | 0.00 | 40.46 | 4.02 |
4671 | 9769 | 1.693606 | CACCCAAAGAGCCAAAATGGT | 59.306 | 47.619 | 0.00 | 0.00 | 40.46 | 3.55 |
4672 | 9770 | 1.608801 | GCACCCAAAGAGCCAAAATGG | 60.609 | 52.381 | 0.00 | 0.00 | 41.55 | 3.16 |
4673 | 9771 | 1.070445 | TGCACCCAAAGAGCCAAAATG | 59.930 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
4674 | 9772 | 1.422531 | TGCACCCAAAGAGCCAAAAT | 58.577 | 45.000 | 0.00 | 0.00 | 0.00 | 1.82 |
4675 | 9773 | 1.422531 | ATGCACCCAAAGAGCCAAAA | 58.577 | 45.000 | 0.00 | 0.00 | 0.00 | 2.44 |
4676 | 9774 | 2.300956 | TATGCACCCAAAGAGCCAAA | 57.699 | 45.000 | 0.00 | 0.00 | 0.00 | 3.28 |
4677 | 9775 | 2.101783 | CATATGCACCCAAAGAGCCAA | 58.898 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
4678 | 9776 | 1.766494 | CATATGCACCCAAAGAGCCA | 58.234 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
4679 | 9777 | 0.386838 | GCATATGCACCCAAAGAGCC | 59.613 | 55.000 | 22.84 | 0.00 | 41.59 | 4.70 |
4680 | 9778 | 1.336125 | GAGCATATGCACCCAAAGAGC | 59.664 | 52.381 | 28.62 | 0.00 | 45.16 | 4.09 |
4681 | 9779 | 1.952296 | GGAGCATATGCACCCAAAGAG | 59.048 | 52.381 | 28.15 | 0.00 | 44.49 | 2.85 |
4682 | 9780 | 2.057137 | GGAGCATATGCACCCAAAGA | 57.943 | 50.000 | 28.15 | 0.00 | 44.49 | 2.52 |
4689 | 9787 | 4.136796 | TGTTCATTAGGGAGCATATGCAC | 58.863 | 43.478 | 28.62 | 22.27 | 45.16 | 4.57 |
4690 | 9788 | 4.141413 | ACTGTTCATTAGGGAGCATATGCA | 60.141 | 41.667 | 28.62 | 8.05 | 45.16 | 3.96 |
4691 | 9789 | 4.392940 | ACTGTTCATTAGGGAGCATATGC | 58.607 | 43.478 | 20.36 | 20.36 | 42.49 | 3.14 |
4692 | 9790 | 8.627208 | ATTTACTGTTCATTAGGGAGCATATG | 57.373 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
4693 | 9791 | 9.289782 | GAATTTACTGTTCATTAGGGAGCATAT | 57.710 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
4694 | 9792 | 8.271458 | TGAATTTACTGTTCATTAGGGAGCATA | 58.729 | 33.333 | 0.00 | 0.00 | 31.07 | 3.14 |
4695 | 9793 | 7.118723 | TGAATTTACTGTTCATTAGGGAGCAT | 58.881 | 34.615 | 0.00 | 0.00 | 31.07 | 3.79 |
4696 | 9794 | 6.480763 | TGAATTTACTGTTCATTAGGGAGCA | 58.519 | 36.000 | 0.00 | 0.00 | 31.07 | 4.26 |
4697 | 9795 | 7.391148 | TTGAATTTACTGTTCATTAGGGAGC | 57.609 | 36.000 | 0.00 | 0.00 | 35.68 | 4.70 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.