Multiple sequence alignment - TraesCS7B01G118300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G118300 chr7B 100.000 5355 0 0 1 5355 137792403 137797757 0.000000e+00 9889
1 TraesCS7B01G118300 chr7B 98.261 115 1 1 218 331 22065530 22065644 3.270000e-47 200
2 TraesCS7B01G118300 chr7B 96.721 122 1 3 223 342 450588030 450588150 3.270000e-47 200
3 TraesCS7B01G118300 chr7D 91.410 5122 255 59 329 5355 171310941 171315972 0.000000e+00 6850
4 TraesCS7B01G118300 chr7D 94.828 116 6 0 2 117 171310693 171310808 1.180000e-41 182
5 TraesCS7B01G118300 chr7A 93.412 3294 164 20 672 3935 174202503 174205773 0.000000e+00 4831
6 TraesCS7B01G118300 chr7A 87.938 514 28 12 4394 4887 174206309 174206808 4.650000e-160 575
7 TraesCS7B01G118300 chr7A 94.915 236 11 1 3927 4162 174205947 174206181 8.470000e-98 368
8 TraesCS7B01G118300 chr7A 83.981 206 14 11 5151 5355 174212667 174212854 4.260000e-41 180
9 TraesCS7B01G118300 chr7A 94.048 84 5 0 5017 5100 174206866 174206949 1.570000e-25 128
10 TraesCS7B01G118300 chr6D 77.330 397 63 17 3218 3593 379573524 379573914 5.430000e-50 209
11 TraesCS7B01G118300 chr6D 91.429 140 8 4 221 358 112344373 112344510 7.080000e-44 189
12 TraesCS7B01G118300 chr6D 78.022 182 34 6 604 782 379571289 379571467 5.670000e-20 110
13 TraesCS7B01G118300 chr6A 81.273 267 43 6 3334 3595 521451971 521451707 5.430000e-50 209
14 TraesCS7B01G118300 chr6A 78.571 182 32 6 604 782 521454707 521454530 4.380000e-21 113
15 TraesCS7B01G118300 chr6B 77.193 399 64 17 3218 3595 567398104 567397712 1.950000e-49 207
16 TraesCS7B01G118300 chr6B 78.022 182 34 6 604 782 567400277 567400099 5.670000e-20 110
17 TraesCS7B01G118300 chr5B 99.107 112 1 0 223 334 70910687 70910798 9.090000e-48 202
18 TraesCS7B01G118300 chr3B 97.479 119 2 1 224 341 577429312 577429194 9.090000e-48 202
19 TraesCS7B01G118300 chr5D 96.639 119 3 1 221 339 544700382 544700499 4.230000e-46 196
20 TraesCS7B01G118300 chr2A 95.902 122 4 1 217 337 722814122 722814001 4.230000e-46 196
21 TraesCS7B01G118300 chr4B 93.846 130 4 3 222 349 541921551 541921424 5.470000e-45 193
22 TraesCS7B01G118300 chr4A 92.029 138 6 4 221 353 181949407 181949544 7.080000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G118300 chr7B 137792403 137797757 5354 False 9889.0 9889 100.00000 1 5355 1 chr7B.!!$F2 5354
1 TraesCS7B01G118300 chr7D 171310693 171315972 5279 False 3516.0 6850 93.11900 2 5355 2 chr7D.!!$F1 5353
2 TraesCS7B01G118300 chr7A 174202503 174206949 4446 False 1475.5 4831 92.57825 672 5100 4 chr7A.!!$F2 4428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 467 0.400213 TTGACAGGGCCAGTACCAAG 59.600 55.0 6.18 0.0 0.00 3.61 F
1889 1926 0.238289 CTACACAAACCTGCTTGCCG 59.762 55.0 0.00 0.0 0.00 5.69 F
2275 2318 2.099263 GAGCGAGTGCATAGTACCTTCA 59.901 50.0 0.00 0.0 46.23 3.02 F
3313 3388 0.042431 AGTCCAGCATCCTGAGACCT 59.958 55.0 2.67 0.0 41.77 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2188 0.170561 CTGCTCTTGGTTGCTCATGC 59.829 55.0 0.0 0.0 40.20 4.06 R
3265 3340 0.183492 TGTCCGGTACTATACCCGCT 59.817 55.0 0.0 0.0 46.27 5.52 R
3520 3595 1.056660 ACGTCTGGTCCACTTCCATT 58.943 50.0 0.0 0.0 34.26 3.16 R
5284 5598 0.106569 TCGGCCCAGGTAGACGATTA 60.107 55.0 0.0 0.0 0.00 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 8.421784 TCTCTGAAGTTTGACACACTACTTAAT 58.578 33.333 0.00 0.00 31.41 1.40
117 118 4.241681 TCAACCAACAAACAAGCAAACTC 58.758 39.130 0.00 0.00 0.00 3.01
119 120 4.264460 ACCAACAAACAAGCAAACTCAA 57.736 36.364 0.00 0.00 0.00 3.02
122 123 4.270808 CCAACAAACAAGCAAACTCAATCC 59.729 41.667 0.00 0.00 0.00 3.01
123 124 4.734398 ACAAACAAGCAAACTCAATCCA 57.266 36.364 0.00 0.00 0.00 3.41
124 125 5.280654 ACAAACAAGCAAACTCAATCCAT 57.719 34.783 0.00 0.00 0.00 3.41
125 126 5.051816 ACAAACAAGCAAACTCAATCCATG 58.948 37.500 0.00 0.00 0.00 3.66
127 128 4.510038 ACAAGCAAACTCAATCCATGAC 57.490 40.909 0.00 0.00 33.47 3.06
128 129 4.147321 ACAAGCAAACTCAATCCATGACT 58.853 39.130 0.00 0.00 33.47 3.41
130 131 5.948162 ACAAGCAAACTCAATCCATGACTAT 59.052 36.000 0.00 0.00 33.47 2.12
131 132 6.094603 ACAAGCAAACTCAATCCATGACTATC 59.905 38.462 0.00 0.00 33.47 2.08
132 133 5.999044 AGCAAACTCAATCCATGACTATCT 58.001 37.500 0.00 0.00 33.47 1.98
133 134 6.054295 AGCAAACTCAATCCATGACTATCTC 58.946 40.000 0.00 0.00 33.47 2.75
134 135 5.238214 GCAAACTCAATCCATGACTATCTCC 59.762 44.000 0.00 0.00 33.47 3.71
145 179 8.008513 TCCATGACTATCTCCTTTTACACTAC 57.991 38.462 0.00 0.00 0.00 2.73
153 187 9.930693 CTATCTCCTTTTACACTACAAAGAAGT 57.069 33.333 0.00 0.00 32.56 3.01
155 189 9.628500 ATCTCCTTTTACACTACAAAGAAGTTT 57.372 29.630 0.00 0.00 32.56 2.66
167 201 6.715347 ACAAAGAAGTTTTCTATGGCTGTT 57.285 33.333 0.00 0.00 39.61 3.16
171 205 6.715347 AGAAGTTTTCTATGGCTGTTTTGT 57.285 33.333 0.00 0.00 38.49 2.83
172 206 7.817418 AGAAGTTTTCTATGGCTGTTTTGTA 57.183 32.000 0.00 0.00 38.49 2.41
173 207 8.409358 AGAAGTTTTCTATGGCTGTTTTGTAT 57.591 30.769 0.00 0.00 38.49 2.29
176 210 7.378181 AGTTTTCTATGGCTGTTTTGTATTGG 58.622 34.615 0.00 0.00 0.00 3.16
178 212 5.186256 TCTATGGCTGTTTTGTATTGGGA 57.814 39.130 0.00 0.00 0.00 4.37
179 213 5.575157 TCTATGGCTGTTTTGTATTGGGAA 58.425 37.500 0.00 0.00 0.00 3.97
180 214 4.806640 ATGGCTGTTTTGTATTGGGAAG 57.193 40.909 0.00 0.00 0.00 3.46
181 215 3.571590 TGGCTGTTTTGTATTGGGAAGT 58.428 40.909 0.00 0.00 0.00 3.01
182 216 3.320541 TGGCTGTTTTGTATTGGGAAGTG 59.679 43.478 0.00 0.00 0.00 3.16
183 217 3.306019 GGCTGTTTTGTATTGGGAAGTGG 60.306 47.826 0.00 0.00 0.00 4.00
184 218 3.306019 GCTGTTTTGTATTGGGAAGTGGG 60.306 47.826 0.00 0.00 0.00 4.61
185 219 3.895041 CTGTTTTGTATTGGGAAGTGGGT 59.105 43.478 0.00 0.00 0.00 4.51
189 223 3.992943 TGTATTGGGAAGTGGGTACTG 57.007 47.619 0.00 0.00 37.19 2.74
210 244 5.425539 ACTGGCAGTACTCATATAACCAAGT 59.574 40.000 20.61 0.00 0.00 3.16
228 262 7.981102 ACCAAGTTACTCTTCAAAATACTCC 57.019 36.000 0.00 0.00 33.63 3.85
229 263 6.940867 ACCAAGTTACTCTTCAAAATACTCCC 59.059 38.462 0.00 0.00 33.63 4.30
230 264 7.168905 CCAAGTTACTCTTCAAAATACTCCCT 58.831 38.462 0.00 0.00 33.63 4.20
231 265 7.334671 CCAAGTTACTCTTCAAAATACTCCCTC 59.665 40.741 0.00 0.00 33.63 4.30
232 266 6.948589 AGTTACTCTTCAAAATACTCCCTCC 58.051 40.000 0.00 0.00 0.00 4.30
233 267 4.473477 ACTCTTCAAAATACTCCCTCCG 57.527 45.455 0.00 0.00 0.00 4.63
234 268 3.838903 ACTCTTCAAAATACTCCCTCCGT 59.161 43.478 0.00 0.00 0.00 4.69
235 269 4.286291 ACTCTTCAAAATACTCCCTCCGTT 59.714 41.667 0.00 0.00 0.00 4.44
236 270 4.828829 TCTTCAAAATACTCCCTCCGTTC 58.171 43.478 0.00 0.00 0.00 3.95
237 271 3.241067 TCAAAATACTCCCTCCGTTCG 57.759 47.619 0.00 0.00 0.00 3.95
238 272 2.093869 TCAAAATACTCCCTCCGTTCGG 60.094 50.000 4.74 4.74 0.00 4.30
239 273 1.856629 AAATACTCCCTCCGTTCGGA 58.143 50.000 13.34 13.34 0.00 4.55
240 274 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
241 275 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
242 276 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
243 277 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
244 278 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
245 279 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
246 280 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
247 281 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
248 282 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
249 283 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
250 284 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
251 285 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
252 286 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
253 287 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
254 288 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
255 289 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
256 290 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
257 291 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
258 292 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
259 293 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
260 294 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
261 295 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
262 296 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
263 297 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
264 298 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
265 299 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
266 300 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
267 301 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
268 302 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
269 303 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
270 304 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
271 305 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
272 306 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
273 307 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
274 308 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
275 309 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
276 310 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
277 311 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
304 338 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
305 339 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
306 340 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
307 341 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
308 342 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
309 343 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
310 344 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
311 345 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
312 346 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
313 347 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
314 348 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
315 349 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
316 350 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
317 351 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
318 352 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
319 353 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
320 354 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
321 355 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
322 356 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
323 357 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
324 358 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
325 359 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
326 360 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
327 361 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
328 362 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
329 363 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
330 364 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
331 365 0.967380 TTCCGAACGGAGGGAGTACC 60.967 60.000 15.34 0.00 46.06 3.34
338 372 4.279169 CGAACGGAGGGAGTACCATATAAA 59.721 45.833 0.00 0.00 43.89 1.40
340 374 5.803237 ACGGAGGGAGTACCATATAAAAG 57.197 43.478 0.00 0.00 43.89 2.27
344 378 5.307196 GGAGGGAGTACCATATAAAAGCTCA 59.693 44.000 0.00 0.00 43.89 4.26
411 448 7.975616 GTGACAAATGCATAGTAATTCATGGTT 59.024 33.333 0.00 0.00 0.00 3.67
421 458 1.560505 ATTCATGGTTTGACAGGGCC 58.439 50.000 0.00 0.00 32.84 5.80
430 467 0.400213 TTGACAGGGCCAGTACCAAG 59.600 55.000 6.18 0.00 0.00 3.61
431 468 0.766674 TGACAGGGCCAGTACCAAGT 60.767 55.000 6.18 0.00 0.00 3.16
466 503 3.970842 AGGTTAGAGACTAGACCACAGG 58.029 50.000 0.00 0.00 34.60 4.00
467 504 3.592427 AGGTTAGAGACTAGACCACAGGA 59.408 47.826 0.00 0.00 34.60 3.86
468 505 3.949113 GGTTAGAGACTAGACCACAGGAG 59.051 52.174 0.00 0.00 32.41 3.69
517 554 7.031372 ACAACAGATTCTAAATAGAACGCGTA 58.969 34.615 14.46 0.00 44.30 4.42
525 562 4.842139 AAATAGAACGCGTAAGAAGCAG 57.158 40.909 14.46 0.00 43.02 4.24
528 565 1.137513 GAACGCGTAAGAAGCAGTGT 58.862 50.000 14.46 0.00 43.02 3.55
534 571 3.722082 CGCGTAAGAAGCAGTGTGAATTC 60.722 47.826 0.00 0.00 43.02 2.17
535 572 3.186409 GCGTAAGAAGCAGTGTGAATTCA 59.814 43.478 3.38 3.38 43.02 2.57
542 579 3.564235 GCAGTGTGAATTCATTGCTGA 57.436 42.857 26.58 0.00 44.02 4.26
562 599 6.483385 CTGATTAGCAAATCCTCATAGCTG 57.517 41.667 0.00 0.00 40.78 4.24
563 600 6.178607 TGATTAGCAAATCCTCATAGCTGA 57.821 37.500 0.00 0.00 40.78 4.26
663 700 5.939764 AGAAACTATCTAGTGACATGGCA 57.060 39.130 0.00 0.00 36.32 4.92
795 832 5.123027 GCTTTGGAATCTAACAGAAGACAGG 59.877 44.000 0.00 0.00 0.00 4.00
796 833 4.207891 TGGAATCTAACAGAAGACAGGC 57.792 45.455 0.00 0.00 0.00 4.85
873 910 3.563223 TCCCTCTGTCTCCTTTATACCG 58.437 50.000 0.00 0.00 0.00 4.02
890 927 7.592885 TTATACCGTAATGGCTTCTAGTTCT 57.407 36.000 0.00 0.00 43.94 3.01
994 1031 7.673641 ATATGAGAGTTCTCTTGATCCAAGT 57.326 36.000 10.27 0.00 43.25 3.16
1008 1045 0.251916 CCAAGTAATGCACCTCCGGA 59.748 55.000 2.93 2.93 0.00 5.14
1017 1054 2.016961 CACCTCCGGATTTGCATCG 58.983 57.895 3.57 0.00 0.00 3.84
1032 1069 1.400242 GCATCGGCGGCTATTCAAATC 60.400 52.381 7.21 0.00 0.00 2.17
1071 1108 6.809196 GTCCAAATGTAAAAAGTGAACACACA 59.191 34.615 7.68 3.12 37.04 3.72
1080 1117 3.340814 AGTGAACACACAGATCATCCC 57.659 47.619 7.68 0.00 37.04 3.85
1081 1118 2.639347 AGTGAACACACAGATCATCCCA 59.361 45.455 7.68 0.00 37.04 4.37
1227 1264 4.349503 AGGCATGCCGAGGTGCAA 62.350 61.111 30.50 0.00 45.84 4.08
1396 1433 7.611079 CACCCTACTATTAGTATACTCTGGACC 59.389 44.444 9.12 0.00 29.08 4.46
1453 1490 1.522668 TAGGCAGTGCATGAACACAC 58.477 50.000 18.61 0.00 43.23 3.82
1535 1572 4.698583 AACAGTAGCTACTACCTTCACG 57.301 45.455 25.63 13.22 37.65 4.35
1717 1754 2.102553 GACTCCGCGTACCTCTGC 59.897 66.667 4.92 0.00 0.00 4.26
1762 1799 2.829206 CGCAAACCGTGTGGCTTCA 61.829 57.895 0.00 0.00 39.70 3.02
1792 1829 2.202676 GTGCTTCTCTCCGAGGCG 60.203 66.667 0.00 0.00 46.85 5.52
1889 1926 0.238289 CTACACAAACCTGCTTGCCG 59.762 55.000 0.00 0.00 0.00 5.69
1957 1994 3.766545 TCCAGGTGCTTCTTTATTTGCT 58.233 40.909 0.00 0.00 0.00 3.91
1984 2021 2.936032 GCCACCCCTCCTGTCCTT 60.936 66.667 0.00 0.00 0.00 3.36
1988 2025 3.732849 CCCCTCCTGTCCTTGGCC 61.733 72.222 0.00 0.00 0.00 5.36
2057 2094 7.625469 TGATAACCATAATCACAGTGGTAACA 58.375 34.615 0.00 0.00 45.10 2.41
2137 2180 5.809051 CCTTGTCGGGTACAATTCTTACTAC 59.191 44.000 0.00 0.00 46.81 2.73
2145 2188 5.855395 GGTACAATTCTTACTACGATAGCCG 59.145 44.000 0.00 0.00 45.44 5.52
2151 2194 3.188667 TCTTACTACGATAGCCGCATGAG 59.811 47.826 0.00 0.00 43.32 2.90
2275 2318 2.099263 GAGCGAGTGCATAGTACCTTCA 59.901 50.000 0.00 0.00 46.23 3.02
2293 2336 3.198409 TCACAGTCTGCAATTGTGAGT 57.802 42.857 18.34 6.25 46.22 3.41
2433 2482 7.771183 ACTTTATGGCATTACAACTTACATGG 58.229 34.615 4.78 0.00 0.00 3.66
2450 2499 7.506938 ACTTACATGGCATGCTATAATTTCCTT 59.493 33.333 26.70 5.56 0.00 3.36
2520 2569 6.737720 AATGATAAGATCAGCCAGAGTACA 57.262 37.500 0.00 0.00 43.53 2.90
2669 2718 3.529533 CTGACATAGCCACTCCAAAGAG 58.470 50.000 0.00 0.00 46.36 2.85
2678 2727 3.318017 CCACTCCAAAGAGAAGTACACG 58.682 50.000 0.00 0.00 43.39 4.49
2686 2735 2.526432 AGAGAAGTACACGACCCATGT 58.474 47.619 0.00 0.00 0.00 3.21
2705 2754 5.879223 CCATGTCTAGGCAGATTAATGGATC 59.121 44.000 6.56 0.00 39.33 3.36
2710 2759 6.648725 GTCTAGGCAGATTAATGGATCAGTTC 59.351 42.308 0.00 0.00 32.09 3.01
2711 2760 4.723309 AGGCAGATTAATGGATCAGTTCC 58.277 43.478 0.00 0.00 45.69 3.62
2722 2771 9.667107 TTAATGGATCAGTTCCTGTACTTTTAG 57.333 33.333 0.00 0.00 45.68 1.85
2726 2775 6.590677 GGATCAGTTCCTGTACTTTTAGACAC 59.409 42.308 0.00 0.00 41.78 3.67
2733 2782 6.880484 TCCTGTACTTTTAGACACAGAACAA 58.120 36.000 11.85 0.00 40.67 2.83
2737 2786 7.051623 TGTACTTTTAGACACAGAACAACCAT 58.948 34.615 0.00 0.00 0.00 3.55
2738 2787 6.377327 ACTTTTAGACACAGAACAACCATG 57.623 37.500 0.00 0.00 0.00 3.66
2765 2827 6.426328 CAGCTCTCAATCCATATGTAAACTCC 59.574 42.308 1.24 0.00 0.00 3.85
2776 2838 8.920174 TCCATATGTAAACTCCGAAATTCTCTA 58.080 33.333 1.24 0.00 0.00 2.43
2784 2846 6.600882 ACTCCGAAATTCTCTACCAACTAA 57.399 37.500 0.00 0.00 0.00 2.24
2850 2912 9.965902 AAATGGAATTACTGTCATAGAAACTCT 57.034 29.630 0.00 0.00 33.67 3.24
2867 2929 8.747538 AGAAACTCTAAAGAAAGTTTAGGCAA 57.252 30.769 0.84 0.00 43.76 4.52
2869 2931 9.452065 GAAACTCTAAAGAAAGTTTAGGCAAAG 57.548 33.333 0.84 0.00 43.76 2.77
2895 2961 9.448294 GTAATTGATTAGTCCGTGTACTTCTAG 57.552 37.037 0.00 0.00 0.00 2.43
2946 3021 5.084519 ACTAGAAGGTCACTCCATACACAA 58.915 41.667 0.00 0.00 39.02 3.33
2954 3029 4.926238 GTCACTCCATACACAAACTCTCAG 59.074 45.833 0.00 0.00 0.00 3.35
2958 3033 7.178451 TCACTCCATACACAAACTCTCAGATTA 59.822 37.037 0.00 0.00 0.00 1.75
2963 3038 7.042187 CCATACACAAACTCTCAGATTATCTGC 60.042 40.741 16.72 0.00 43.95 4.26
2967 3042 5.879223 ACAAACTCTCAGATTATCTGCCAAG 59.121 40.000 16.72 14.55 43.95 3.61
2973 3048 7.048629 TCTCAGATTATCTGCCAAGTAGAAG 57.951 40.000 16.72 6.42 43.95 2.85
2993 3068 2.761208 AGCTACGCTCTCTGTTTACCAT 59.239 45.455 0.00 0.00 30.62 3.55
2994 3069 3.195825 AGCTACGCTCTCTGTTTACCATT 59.804 43.478 0.00 0.00 30.62 3.16
2995 3070 3.552294 GCTACGCTCTCTGTTTACCATTC 59.448 47.826 0.00 0.00 0.00 2.67
2997 3072 3.851098 ACGCTCTCTGTTTACCATTCTC 58.149 45.455 0.00 0.00 0.00 2.87
3006 3081 9.647918 TCTCTGTTTACCATTCTCTCTATACAT 57.352 33.333 0.00 0.00 0.00 2.29
3009 3084 9.613957 CTGTTTACCATTCTCTCTATACATACG 57.386 37.037 0.00 0.00 0.00 3.06
3010 3085 8.573885 TGTTTACCATTCTCTCTATACATACGG 58.426 37.037 0.00 0.00 0.00 4.02
3013 3088 7.633193 ACCATTCTCTCTATACATACGGATC 57.367 40.000 0.00 0.00 0.00 3.36
3033 3108 7.869937 ACGGATCACTACATGAAAGAATATGAG 59.130 37.037 0.00 0.00 41.93 2.90
3090 3165 5.724854 AGTGTAGGTTTTATCCCTAAGCAGA 59.275 40.000 0.00 0.00 36.35 4.26
3103 3178 6.875076 TCCCTAAGCAGAGTTTACATAGTTC 58.125 40.000 0.00 0.00 0.00 3.01
3127 3202 8.445361 TCTATAGTCTAAACAGGGAAAAGGTT 57.555 34.615 0.00 0.00 0.00 3.50
3137 3212 8.999905 AAACAGGGAAAAGGTTATACTACAAA 57.000 30.769 0.00 0.00 0.00 2.83
3233 3308 7.475771 TTGCACATTTTAAGTGACCATTTTC 57.524 32.000 0.00 0.00 39.30 2.29
3259 3334 7.035004 CGATTCCATCTCAGATATCTTTCTCC 58.965 42.308 1.33 0.00 0.00 3.71
3265 3340 7.256583 CCATCTCAGATATCTTTCTCCATGGAA 60.257 40.741 17.00 0.00 30.97 3.53
3313 3388 0.042431 AGTCCAGCATCCTGAGACCT 59.958 55.000 2.67 0.00 41.77 3.85
3322 3397 2.183811 CTGAGACCTGCTGGAGCG 59.816 66.667 17.64 0.00 45.83 5.03
3355 3430 3.004839 TCTCAAGTCCTTCACTTCAGACG 59.995 47.826 0.00 0.00 44.14 4.18
3361 3436 1.143305 CTTCACTTCAGACGCCACTG 58.857 55.000 0.00 0.00 39.02 3.66
3365 3440 2.280797 TTCAGACGCCACTGCACC 60.281 61.111 0.00 0.00 37.75 5.01
3493 3568 2.830370 CGGCCAAGGATCAAGGGC 60.830 66.667 2.24 11.17 45.67 5.19
3517 3592 4.983090 GCCAAACGATCAGATGCG 57.017 55.556 0.00 0.00 0.00 4.73
3520 3595 1.368641 CCAAACGATCAGATGCGGAA 58.631 50.000 0.00 0.00 0.00 4.30
3577 3652 6.292923 CCTATCTGACAGTAGCTACAGTACT 58.707 44.000 25.28 3.19 0.00 2.73
3612 3687 4.248058 TGATGAGGCATCGTATTAGCATG 58.752 43.478 0.00 0.00 43.14 4.06
3614 3689 4.864704 TGAGGCATCGTATTAGCATGTA 57.135 40.909 0.00 0.00 0.00 2.29
3642 3717 8.060075 ACTTACCAGAGTGATAAGGTACAGTAT 58.940 37.037 0.00 0.00 35.62 2.12
3657 3732 7.620880 AGGTACAGTATGAGTATTTCAAGCAA 58.379 34.615 0.00 0.00 39.69 3.91
3661 3736 8.565896 ACAGTATGAGTATTTCAAGCAAATCA 57.434 30.769 0.00 0.00 39.69 2.57
3688 3763 7.744733 TGCTCTGAATAATGGTTGGATATGTA 58.255 34.615 0.00 0.00 0.00 2.29
3705 3780 9.502091 TGGATATGTACAACTTAATCATAAGGC 57.498 33.333 0.00 0.00 42.39 4.35
3715 3790 5.823045 ACTTAATCATAAGGCACCTTAGCAC 59.177 40.000 14.20 0.00 42.39 4.40
3720 3795 0.249398 AAGGCACCTTAGCACCTACG 59.751 55.000 0.00 0.00 34.05 3.51
3726 3801 3.395639 CACCTTAGCACCTACGTTTTGA 58.604 45.455 0.00 0.00 0.00 2.69
3775 3850 5.457148 GTGATGTTAGATACTTGCTCAGTCG 59.543 44.000 0.00 0.00 36.88 4.18
3801 3876 5.182487 TCAGTTACAAGTGAACAAAGAGCA 58.818 37.500 0.00 0.00 35.53 4.26
3813 3889 9.372369 AGTGAACAAAGAGCAGTATTAACTATC 57.628 33.333 0.00 0.00 33.48 2.08
3814 3890 9.151471 GTGAACAAAGAGCAGTATTAACTATCA 57.849 33.333 0.00 0.00 33.48 2.15
3867 3943 1.445410 GGGGCGCGTTGGATTTTTC 60.445 57.895 8.43 0.00 0.00 2.29
3869 3945 0.456142 GGGCGCGTTGGATTTTTCTC 60.456 55.000 8.43 0.00 0.00 2.87
3870 3946 0.521735 GGCGCGTTGGATTTTTCTCT 59.478 50.000 8.43 0.00 0.00 3.10
3871 3947 1.465856 GGCGCGTTGGATTTTTCTCTC 60.466 52.381 8.43 0.00 0.00 3.20
3876 3952 4.083802 CGCGTTGGATTTTTCTCTCTTTCT 60.084 41.667 0.00 0.00 0.00 2.52
3884 3960 7.915397 TGGATTTTTCTCTCTTTCTTTTTGACG 59.085 33.333 0.00 0.00 0.00 4.35
3886 3962 9.503427 GATTTTTCTCTCTTTCTTTTTGACGAA 57.497 29.630 0.00 0.00 0.00 3.85
3921 3997 4.888239 AGCTGATTTCATTGATGAAGGGAG 59.112 41.667 6.53 5.47 46.34 4.30
3945 4203 9.135843 GAGGGTAATGTTACAAAGCAAATTTAC 57.864 33.333 5.38 0.00 35.37 2.01
4059 4317 5.186198 GCTTGAATAGGTCTTCCAGCTAAA 58.814 41.667 0.00 0.00 39.54 1.85
4073 4331 4.003648 CCAGCTAAAGATTGAACGGAACT 58.996 43.478 0.00 0.00 0.00 3.01
4078 4336 6.879458 AGCTAAAGATTGAACGGAACTGTAAT 59.121 34.615 0.00 0.00 0.00 1.89
4108 4366 5.535753 ACTCAAGGCTTGTTTTTGCTAAT 57.464 34.783 25.39 0.00 0.00 1.73
4124 4382 3.096092 GCTAATCCCCATCAACCAAACA 58.904 45.455 0.00 0.00 0.00 2.83
4173 4431 8.986929 ACTAGCTTAGATTTAATGGAAGCAAT 57.013 30.769 17.33 5.73 43.94 3.56
4194 4452 6.405065 GCAATGCTTGTTTCCTTATCAGATGA 60.405 38.462 0.00 0.00 0.00 2.92
4233 4491 5.163184 TGGTTGAGTGTGTCCAGGTATTTAA 60.163 40.000 0.00 0.00 0.00 1.52
4237 4495 5.414454 TGAGTGTGTCCAGGTATTTAATTGC 59.586 40.000 0.00 0.00 0.00 3.56
4307 4565 3.265791 GTGATGACATCCTCACCACTTC 58.734 50.000 12.90 0.00 40.08 3.01
4326 4584 0.321387 CTGCTCATCTGCTGGTGTGT 60.321 55.000 3.58 0.00 0.00 3.72
4336 4594 1.210722 TGCTGGTGTGTTTGTAGTCCA 59.789 47.619 0.00 0.00 0.00 4.02
4351 4609 6.636454 TGTAGTCCACAAATTCCTCCTAAT 57.364 37.500 0.00 0.00 32.95 1.73
4353 4611 8.153221 TGTAGTCCACAAATTCCTCCTAATAA 57.847 34.615 0.00 0.00 32.95 1.40
4391 4649 8.999905 ACTAGAGTATAAGAGTTTTAGGAGGG 57.000 38.462 0.00 0.00 0.00 4.30
4416 4675 5.531659 GGAGAACTGTCCGATAGAGATACAA 59.468 44.000 0.00 0.00 39.76 2.41
4429 4688 8.390354 CGATAGAGATACAACATTTTTCTTGCA 58.610 33.333 0.00 0.00 39.76 4.08
4529 4788 7.571244 GCTCTCTCATTCTCAGATAGTTCTACG 60.571 44.444 0.00 0.00 0.00 3.51
4611 4870 2.731572 CAAAGCCAACTCATCCAGGAT 58.268 47.619 0.00 0.00 0.00 3.24
4686 4948 8.662141 TGTTTTTCTAGTGAACTGTAACAAGTC 58.338 33.333 0.00 0.00 31.02 3.01
4794 5078 7.290110 ACCTTCATCGATATTGTACAGATGA 57.710 36.000 16.59 16.59 43.83 2.92
4828 5112 3.871594 CGTACATCATCCTGTTCCTTTCC 59.128 47.826 0.00 0.00 0.00 3.13
4845 5129 6.369629 TCCTTTCCACCTTCAAAATCTACAA 58.630 36.000 0.00 0.00 0.00 2.41
4872 5156 2.420687 GGAGAGGAGCATTGGTTGGTAG 60.421 54.545 0.00 0.00 35.82 3.18
4873 5157 2.237392 GAGAGGAGCATTGGTTGGTAGT 59.763 50.000 0.00 0.00 35.82 2.73
4874 5158 3.450904 AGAGGAGCATTGGTTGGTAGTA 58.549 45.455 0.00 0.00 35.82 1.82
4907 5191 1.536766 CGCTCTGTGAATGGAAGCAAA 59.463 47.619 0.00 0.00 0.00 3.68
4926 5211 1.598869 AAAATAGGGCCCCCGACTTA 58.401 50.000 21.43 2.71 41.95 2.24
4930 5215 2.474133 TAGGGCCCCCGACTTACCAA 62.474 60.000 21.43 0.00 41.95 3.67
4937 5222 0.251916 CCCGACTTACCAAGGCATGA 59.748 55.000 0.00 0.00 35.79 3.07
4941 5226 0.392998 ACTTACCAAGGCATGAGGCG 60.393 55.000 0.00 0.00 46.16 5.52
4944 5229 0.978667 TACCAAGGCATGAGGCGGTA 60.979 55.000 0.00 0.00 46.16 4.02
4967 5252 5.082425 AGAAACCTAGAAACGAAGGAGGTA 58.918 41.667 0.00 0.00 39.65 3.08
4970 5255 3.195182 ACCTAGAAACGAAGGAGGTAAGC 59.805 47.826 0.00 0.00 38.77 3.09
4988 5273 1.135083 AGCTGTATGGAACTTCGTCCG 60.135 52.381 0.00 0.00 40.96 4.79
4996 5281 1.480205 GAACTTCGTCCGTCGTTTCA 58.520 50.000 0.00 0.00 40.80 2.69
4997 5282 2.056577 GAACTTCGTCCGTCGTTTCAT 58.943 47.619 0.00 0.00 40.80 2.57
4998 5283 1.415374 ACTTCGTCCGTCGTTTCATG 58.585 50.000 0.00 0.00 40.80 3.07
4999 5284 0.713883 CTTCGTCCGTCGTTTCATGG 59.286 55.000 0.00 0.00 40.80 3.66
5000 5285 0.314618 TTCGTCCGTCGTTTCATGGA 59.685 50.000 0.00 0.00 40.80 3.41
5001 5286 0.314618 TCGTCCGTCGTTTCATGGAA 59.685 50.000 0.00 0.00 40.80 3.53
5002 5287 0.437295 CGTCCGTCGTTTCATGGAAC 59.563 55.000 6.82 6.82 32.97 3.62
5003 5288 0.794473 GTCCGTCGTTTCATGGAACC 59.206 55.000 11.39 0.00 32.97 3.62
5004 5289 0.393448 TCCGTCGTTTCATGGAACCA 59.607 50.000 11.39 0.00 0.00 3.67
5005 5290 0.796312 CCGTCGTTTCATGGAACCAG 59.204 55.000 11.39 2.96 0.00 4.00
5006 5291 0.165944 CGTCGTTTCATGGAACCAGC 59.834 55.000 11.39 1.14 0.00 4.85
5007 5292 0.165944 GTCGTTTCATGGAACCAGCG 59.834 55.000 11.39 0.00 0.00 5.18
5008 5293 0.953471 TCGTTTCATGGAACCAGCGG 60.953 55.000 11.39 0.00 0.00 5.52
5009 5294 0.953471 CGTTTCATGGAACCAGCGGA 60.953 55.000 11.39 0.00 0.00 5.54
5010 5295 1.243902 GTTTCATGGAACCAGCGGAA 58.756 50.000 5.47 1.24 0.00 4.30
5011 5296 1.068541 GTTTCATGGAACCAGCGGAAC 60.069 52.381 5.47 1.25 0.00 3.62
5012 5297 0.400213 TTCATGGAACCAGCGGAACT 59.600 50.000 0.00 0.00 0.00 3.01
5013 5298 1.271856 TCATGGAACCAGCGGAACTA 58.728 50.000 0.00 0.00 0.00 2.24
5014 5299 1.626321 TCATGGAACCAGCGGAACTAA 59.374 47.619 0.00 0.00 0.00 2.24
5015 5300 2.009774 CATGGAACCAGCGGAACTAAG 58.990 52.381 0.00 0.00 0.00 2.18
5078 5363 1.065251 GCGTACCTCCTAACTTCCTCG 59.935 57.143 0.00 0.00 0.00 4.63
5190 5504 2.169832 TTCTGTTCTTCCAGAAGCGG 57.830 50.000 2.38 0.00 44.39 5.52
5235 5549 2.169327 GGCGACGTTTCGGTTTCG 59.831 61.111 0.00 0.00 45.98 3.46
5236 5550 2.302230 GGCGACGTTTCGGTTTCGA 61.302 57.895 0.00 0.00 45.98 3.71
5246 5560 2.675423 GGTTTCGAAGTGGGGCCC 60.675 66.667 18.17 18.17 0.00 5.80
5269 5583 1.674651 GAGGGAAAACGGGAGGCAC 60.675 63.158 0.00 0.00 0.00 5.01
5289 5603 3.320078 CACGGCGGTCGCTAATCG 61.320 66.667 13.24 11.90 43.89 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 9.434559 GTTGAATTAAGTAGTGTGTCAAACTTC 57.565 33.333 0.00 0.00 34.23 3.01
76 77 7.699566 TGGTTGAATTAAGTAGTGTGTCAAAC 58.300 34.615 0.00 0.00 32.98 2.93
94 95 4.636249 AGTTTGCTTGTTTGTTGGTTGAA 58.364 34.783 0.00 0.00 0.00 2.69
117 118 7.989741 AGTGTAAAAGGAGATAGTCATGGATTG 59.010 37.037 0.00 0.00 0.00 2.67
119 120 7.682787 AGTGTAAAAGGAGATAGTCATGGAT 57.317 36.000 0.00 0.00 0.00 3.41
122 123 9.653287 TTTGTAGTGTAAAAGGAGATAGTCATG 57.347 33.333 0.00 0.00 0.00 3.07
123 124 9.877178 CTTTGTAGTGTAAAAGGAGATAGTCAT 57.123 33.333 0.00 0.00 31.15 3.06
124 125 9.085645 TCTTTGTAGTGTAAAAGGAGATAGTCA 57.914 33.333 0.00 0.00 34.75 3.41
125 126 9.924650 TTCTTTGTAGTGTAAAAGGAGATAGTC 57.075 33.333 0.00 0.00 34.75 2.59
127 128 9.930693 ACTTCTTTGTAGTGTAAAAGGAGATAG 57.069 33.333 9.81 0.00 40.19 2.08
130 131 9.457436 AAAACTTCTTTGTAGTGTAAAAGGAGA 57.543 29.630 9.81 0.00 40.19 3.71
131 132 9.717892 GAAAACTTCTTTGTAGTGTAAAAGGAG 57.282 33.333 2.58 2.58 42.45 3.69
132 133 9.457436 AGAAAACTTCTTTGTAGTGTAAAAGGA 57.543 29.630 0.00 0.00 36.36 3.36
145 179 7.492344 ACAAAACAGCCATAGAAAACTTCTTTG 59.508 33.333 0.00 0.00 41.14 2.77
153 187 6.495181 TCCCAATACAAAACAGCCATAGAAAA 59.505 34.615 0.00 0.00 0.00 2.29
155 189 5.575157 TCCCAATACAAAACAGCCATAGAA 58.425 37.500 0.00 0.00 0.00 2.10
167 201 4.507691 CCAGTACCCACTTCCCAATACAAA 60.508 45.833 0.00 0.00 30.46 2.83
171 205 1.562475 GCCAGTACCCACTTCCCAATA 59.438 52.381 0.00 0.00 30.46 1.90
172 206 0.331616 GCCAGTACCCACTTCCCAAT 59.668 55.000 0.00 0.00 30.46 3.16
173 207 1.063070 TGCCAGTACCCACTTCCCAA 61.063 55.000 0.00 0.00 30.46 4.12
176 210 1.066358 GTACTGCCAGTACCCACTTCC 60.066 57.143 21.83 0.00 43.96 3.46
185 219 6.610020 ACTTGGTTATATGAGTACTGCCAGTA 59.390 38.462 0.00 0.00 0.00 2.74
189 223 7.498443 AGTAACTTGGTTATATGAGTACTGCC 58.502 38.462 0.00 0.00 30.49 4.85
210 244 5.482878 ACGGAGGGAGTATTTTGAAGAGTAA 59.517 40.000 0.00 0.00 0.00 2.24
218 252 2.093869 TCCGAACGGAGGGAGTATTTTG 60.094 50.000 12.04 0.00 39.76 2.44
219 253 2.181975 TCCGAACGGAGGGAGTATTTT 58.818 47.619 12.04 0.00 39.76 1.82
227 261 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
228 262 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
229 263 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
230 264 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
231 265 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
232 266 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
233 267 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
234 268 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
235 269 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
236 270 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
237 271 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
238 272 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
239 273 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
240 274 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
241 275 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
242 276 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
243 277 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
244 278 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
245 279 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
246 280 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
247 281 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
248 282 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
249 283 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
250 284 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
251 285 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
278 312 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
279 313 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
280 314 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
281 315 8.637196 TGTCGTAGAAATGGATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
282 316 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
283 317 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
284 318 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
285 319 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
286 320 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
287 321 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
288 322 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
289 323 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
290 324 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
291 325 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
292 326 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
293 327 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
294 328 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
295 329 6.034256 CGTTCGGAATTACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
296 330 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
297 331 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
298 332 4.406069 CGTTCGGAATTACTTGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
299 333 3.545078 CCGTTCGGAATTACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
300 334 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
301 335 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
302 336 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
303 337 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
304 338 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
305 339 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
306 340 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
307 341 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
308 342 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
309 343 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
310 344 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
311 345 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
312 346 0.967380 GGTACTCCCTCCGTTCGGAA 60.967 60.000 14.79 0.04 33.41 4.30
313 347 1.379044 GGTACTCCCTCCGTTCGGA 60.379 63.158 13.34 13.34 0.00 4.55
314 348 1.041447 ATGGTACTCCCTCCGTTCGG 61.041 60.000 4.74 4.74 0.00 4.30
315 349 1.683943 TATGGTACTCCCTCCGTTCG 58.316 55.000 0.00 0.00 0.00 3.95
316 350 5.796424 TTTATATGGTACTCCCTCCGTTC 57.204 43.478 0.00 0.00 0.00 3.95
317 351 5.454329 GCTTTTATATGGTACTCCCTCCGTT 60.454 44.000 0.00 0.00 0.00 4.44
318 352 4.040095 GCTTTTATATGGTACTCCCTCCGT 59.960 45.833 0.00 0.00 0.00 4.69
319 353 4.283722 AGCTTTTATATGGTACTCCCTCCG 59.716 45.833 0.00 0.00 0.00 4.63
320 354 5.307196 TGAGCTTTTATATGGTACTCCCTCC 59.693 44.000 0.00 0.00 0.00 4.30
321 355 6.420913 TGAGCTTTTATATGGTACTCCCTC 57.579 41.667 0.00 0.00 0.00 4.30
322 356 6.558775 TCATGAGCTTTTATATGGTACTCCCT 59.441 38.462 0.00 0.00 0.00 4.20
323 357 6.769512 TCATGAGCTTTTATATGGTACTCCC 58.230 40.000 0.00 0.00 0.00 4.30
324 358 8.677148 TTTCATGAGCTTTTATATGGTACTCC 57.323 34.615 0.00 0.00 0.00 3.85
368 405 7.575414 TTTGTCACTATGCTTGGTAGAAAAA 57.425 32.000 0.00 0.00 0.00 1.94
377 414 6.127810 ACTATGCATTTGTCACTATGCTTG 57.872 37.500 3.54 10.44 45.66 4.01
387 424 8.810427 CAAACCATGAATTACTATGCATTTGTC 58.190 33.333 3.54 0.00 26.52 3.18
411 448 0.400213 CTTGGTACTGGCCCTGTCAA 59.600 55.000 0.00 0.34 0.00 3.18
421 458 4.820897 TCTGAGTTATGCACTTGGTACTG 58.179 43.478 0.00 0.00 35.01 2.74
430 467 6.311690 GTCTCTAACCTTTCTGAGTTATGCAC 59.688 42.308 0.00 0.00 0.00 4.57
431 468 6.211584 AGTCTCTAACCTTTCTGAGTTATGCA 59.788 38.462 0.00 0.00 0.00 3.96
466 503 5.649782 TCTTTTCAAGGCAAATCCATCTC 57.350 39.130 0.00 0.00 37.29 2.75
467 504 6.423776 TTTCTTTTCAAGGCAAATCCATCT 57.576 33.333 0.00 0.00 37.29 2.90
468 505 7.012232 TGTTTTTCTTTTCAAGGCAAATCCATC 59.988 33.333 0.00 0.00 37.29 3.51
517 554 4.280174 AGCAATGAATTCACACTGCTTCTT 59.720 37.500 25.09 11.66 36.70 2.52
562 599 0.924090 CGGTGCGTCTTGCTTATCTC 59.076 55.000 0.00 0.00 46.63 2.75
563 600 0.246635 ACGGTGCGTCTTGCTTATCT 59.753 50.000 0.00 0.00 46.63 1.98
617 654 6.500684 TTGCTGTCCTATTCATCTGAAAAC 57.499 37.500 0.00 0.00 37.61 2.43
636 673 6.820656 CCATGTCACTAGATAGTTTCTTTGCT 59.179 38.462 0.00 0.00 35.79 3.91
795 832 2.215942 TAGCAAAAGAGAAAGGGGGC 57.784 50.000 0.00 0.00 0.00 5.80
796 833 3.511540 CCTTTAGCAAAAGAGAAAGGGGG 59.488 47.826 4.63 0.00 44.14 5.40
873 910 7.576861 ACTAGAGAGAACTAGAAGCCATTAC 57.423 40.000 9.28 0.00 41.42 1.89
1008 1045 0.593128 GAATAGCCGCCGATGCAAAT 59.407 50.000 0.00 0.00 37.32 2.32
1017 1054 1.002033 CAGCTGATTTGAATAGCCGCC 60.002 52.381 8.42 0.00 38.18 6.13
1032 1069 0.035725 TTGGACTCAGATGCCAGCTG 60.036 55.000 6.78 6.78 32.47 4.24
1396 1433 1.100510 TCAGGAATGTAGGACGTCCG 58.899 55.000 28.26 11.24 42.08 4.79
1453 1490 1.066573 ACCTCTCATGGCTCTTTCGTG 60.067 52.381 0.00 0.00 0.00 4.35
1535 1572 2.736670 AGACCATGCAAGGGGTATTC 57.263 50.000 13.45 0.00 46.47 1.75
1792 1829 0.523072 CCACTGGTGCATGCTTGTAC 59.477 55.000 20.33 11.65 37.70 2.90
1926 1963 2.707849 GCACCTGGAATGGCTGCAG 61.708 63.158 10.11 10.11 42.93 4.41
1927 1964 2.677524 GCACCTGGAATGGCTGCA 60.678 61.111 0.00 0.00 35.63 4.41
1941 1978 3.505836 GCCTCAGCAAATAAAGAAGCAC 58.494 45.455 0.00 0.00 39.53 4.40
1973 2010 4.785453 GCGGCCAAGGACAGGAGG 62.785 72.222 2.24 0.00 0.00 4.30
1984 2021 2.300967 ATCCTCTTCCTTGCGGCCA 61.301 57.895 2.24 0.00 0.00 5.36
1988 2025 0.813210 GAGGCATCCTCTTCCTTGCG 60.813 60.000 5.65 0.00 46.41 4.85
2053 2090 0.818852 TGCTGCTGCTGCTGTTGTTA 60.819 50.000 27.67 7.14 39.81 2.41
2076 2113 4.872691 CCACTTCACCAAAGTATCTGCTAG 59.127 45.833 0.00 0.00 46.69 3.42
2137 2180 1.566563 GTTGCTCATGCGGCTATCG 59.433 57.895 0.00 0.00 43.34 2.92
2145 2188 0.170561 CTGCTCTTGGTTGCTCATGC 59.829 55.000 0.00 0.00 40.20 4.06
2151 2194 2.426522 TCACATACTGCTCTTGGTTGC 58.573 47.619 0.00 0.00 0.00 4.17
2275 2318 3.668447 CCTACTCACAATTGCAGACTGT 58.332 45.455 5.05 2.48 0.00 3.55
2450 2499 6.639563 TGAAGTATGCATGCACTCTAGTTTA 58.360 36.000 25.37 14.19 0.00 2.01
2461 2510 2.042686 TCCACCTGAAGTATGCATGC 57.957 50.000 11.82 11.82 0.00 4.06
2551 2600 9.901172 AAAAGTGAGGAAATACTAAATACCGAT 57.099 29.630 0.00 0.00 0.00 4.18
2610 2659 8.321353 TGGAAATAATCAGCTGAAGTTCTCTAA 58.679 33.333 22.50 5.37 0.00 2.10
2662 2711 2.036733 TGGGTCGTGTACTTCTCTTTGG 59.963 50.000 0.00 0.00 0.00 3.28
2678 2727 4.689612 TTAATCTGCCTAGACATGGGTC 57.310 45.455 0.00 0.00 44.66 4.46
2686 2735 6.753913 AACTGATCCATTAATCTGCCTAGA 57.246 37.500 0.00 0.00 37.35 2.43
2710 2759 6.018180 GGTTGTTCTGTGTCTAAAAGTACAGG 60.018 42.308 0.00 0.00 40.59 4.00
2711 2760 6.537301 TGGTTGTTCTGTGTCTAAAAGTACAG 59.463 38.462 0.00 0.00 41.34 2.74
2722 2771 2.031682 GCTGACATGGTTGTTCTGTGTC 60.032 50.000 0.00 0.00 39.58 3.67
2726 2775 2.740981 GAGAGCTGACATGGTTGTTCTG 59.259 50.000 0.00 0.00 35.79 3.02
2733 2782 1.911357 TGGATTGAGAGCTGACATGGT 59.089 47.619 0.00 0.00 0.00 3.55
2737 2786 6.484364 TTACATATGGATTGAGAGCTGACA 57.516 37.500 7.80 0.00 0.00 3.58
2738 2787 6.989169 AGTTTACATATGGATTGAGAGCTGAC 59.011 38.462 7.80 0.00 0.00 3.51
2765 2827 8.535690 ACTTCTTTAGTTGGTAGAGAATTTCG 57.464 34.615 0.00 0.00 32.76 3.46
2845 2907 8.521170 ACTTTGCCTAAACTTTCTTTAGAGTT 57.479 30.769 2.08 0.00 37.69 3.01
2860 2922 7.065324 CACGGACTAATCAATTACTTTGCCTAA 59.935 37.037 0.00 0.00 35.16 2.69
2867 2929 8.529476 AGAAGTACACGGACTAATCAATTACTT 58.471 33.333 0.00 0.00 31.55 2.24
2869 2931 9.448294 CTAGAAGTACACGGACTAATCAATTAC 57.552 37.037 0.00 0.00 0.00 1.89
2927 2993 4.642429 AGTTTGTGTATGGAGTGACCTTC 58.358 43.478 0.00 0.00 39.86 3.46
2954 3029 5.631512 CGTAGCTTCTACTTGGCAGATAATC 59.368 44.000 0.00 0.00 0.00 1.75
2958 3033 3.444703 CGTAGCTTCTACTTGGCAGAT 57.555 47.619 0.00 0.00 0.00 2.90
2993 3068 8.373220 TGTAGTGATCCGTATGTATAGAGAGAA 58.627 37.037 0.00 0.00 0.00 2.87
2994 3069 7.904205 TGTAGTGATCCGTATGTATAGAGAGA 58.096 38.462 0.00 0.00 0.00 3.10
2995 3070 8.608317 CATGTAGTGATCCGTATGTATAGAGAG 58.392 40.741 0.00 0.00 0.00 3.20
2997 3072 8.494016 TCATGTAGTGATCCGTATGTATAGAG 57.506 38.462 0.00 0.00 0.00 2.43
3006 3081 8.856103 TCATATTCTTTCATGTAGTGATCCGTA 58.144 33.333 0.00 0.00 36.54 4.02
3009 3084 9.941325 ATCTCATATTCTTTCATGTAGTGATCC 57.059 33.333 0.00 0.00 36.54 3.36
3059 3134 9.995594 TTAGGGATAAAACCTACACTAGACTTA 57.004 33.333 0.00 0.00 40.18 2.24
3107 3182 8.215954 AGTATAACCTTTTCCCTGTTTAGACT 57.784 34.615 0.00 0.00 0.00 3.24
3110 3185 9.729281 TTGTAGTATAACCTTTTCCCTGTTTAG 57.271 33.333 0.00 0.00 0.00 1.85
3130 3205 9.748708 TTAGTTGAACGTACATAACTTTGTAGT 57.251 29.630 10.52 0.00 35.26 2.73
3177 3252 2.327200 TGCAGCTGAGATCCTTCATG 57.673 50.000 20.43 0.00 0.00 3.07
3259 3334 2.352421 CGGTACTATACCCGCTTCCATG 60.352 54.545 0.00 0.00 46.27 3.66
3265 3340 0.183492 TGTCCGGTACTATACCCGCT 59.817 55.000 0.00 0.00 46.27 5.52
3313 3388 2.755876 AGACCGATCGCTCCAGCA 60.756 61.111 10.32 0.00 42.21 4.41
3322 3397 3.020984 AGGACTTGAGAAGAGACCGATC 58.979 50.000 0.00 0.00 0.00 3.69
3355 3430 2.745492 GAGCTGAGGTGCAGTGGC 60.745 66.667 0.00 0.00 46.62 5.01
3361 3436 1.078567 CTCCTTGGAGCTGAGGTGC 60.079 63.158 3.51 0.00 34.57 5.01
3365 3440 2.026641 CTCTCTCTCCTTGGAGCTGAG 58.973 57.143 21.77 21.77 33.70 3.35
3506 3581 1.869774 TCCATTTCCGCATCTGATCG 58.130 50.000 0.00 0.00 0.00 3.69
3517 3592 2.437413 GTCTGGTCCACTTCCATTTCC 58.563 52.381 0.00 0.00 34.26 3.13
3520 3595 1.056660 ACGTCTGGTCCACTTCCATT 58.943 50.000 0.00 0.00 34.26 3.16
3577 3652 2.618816 GCCTCATCAGAACCAATGGACA 60.619 50.000 6.16 0.00 0.00 4.02
3582 3657 2.092753 ACGATGCCTCATCAGAACCAAT 60.093 45.455 7.47 0.00 40.54 3.16
3583 3658 1.278985 ACGATGCCTCATCAGAACCAA 59.721 47.619 7.47 0.00 40.54 3.67
3612 3687 7.555554 TGTACCTTATCACTCTGGTAAGTCTAC 59.444 40.741 2.41 2.68 38.95 2.59
3614 3689 6.491383 TGTACCTTATCACTCTGGTAAGTCT 58.509 40.000 2.41 0.00 38.95 3.24
3657 3732 6.608405 TCCAACCATTATTCAGAGCATTGATT 59.392 34.615 0.00 0.00 0.00 2.57
3661 3736 7.727186 ACATATCCAACCATTATTCAGAGCATT 59.273 33.333 0.00 0.00 0.00 3.56
3688 3763 6.318900 GCTAAGGTGCCTTATGATTAAGTTGT 59.681 38.462 10.74 0.00 37.81 3.32
3705 3780 3.395639 TCAAAACGTAGGTGCTAAGGTG 58.604 45.455 0.00 0.00 0.00 4.00
3726 3801 9.982651 ACATACGTGCTATCTGAAACTATAAAT 57.017 29.630 0.00 0.00 0.00 1.40
3775 3850 6.119144 TCTTTGTTCACTTGTAACTGAAGC 57.881 37.500 0.00 0.00 0.00 3.86
3813 3889 6.254480 TGTGCACGCTACATTACATATTTTG 58.746 36.000 13.13 0.00 0.00 2.44
3814 3890 6.429791 TGTGCACGCTACATTACATATTTT 57.570 33.333 13.13 0.00 0.00 1.82
3818 3894 6.079424 TCTATGTGCACGCTACATTACATA 57.921 37.500 13.13 0.00 39.36 2.29
3855 3931 8.534778 CAAAAAGAAAGAGAGAAAAATCCAACG 58.465 33.333 0.00 0.00 0.00 4.10
3876 3952 3.066064 TGCTAGCTGCTTTTCGTCAAAAA 59.934 39.130 17.23 0.00 43.37 1.94
3896 3972 4.360563 CCTTCATCAATGAAATCAGCTGC 58.639 43.478 9.47 0.00 45.26 5.25
3921 3997 8.819643 TGTAAATTTGCTTTGTAACATTACCC 57.180 30.769 7.80 0.00 32.72 3.69
3961 4219 1.173043 CCGCACCCTTTTCAGCATTA 58.827 50.000 0.00 0.00 0.00 1.90
4059 4317 6.231211 AGTGAATTACAGTTCCGTTCAATCT 58.769 36.000 0.00 0.00 31.38 2.40
4073 4331 4.973168 AGCCTTGAGTTGAGTGAATTACA 58.027 39.130 0.00 0.00 0.00 2.41
4078 4336 3.281727 ACAAGCCTTGAGTTGAGTGAA 57.718 42.857 12.25 0.00 0.00 3.18
4108 4366 1.219213 ACCTTGTTTGGTTGATGGGGA 59.781 47.619 0.00 0.00 36.89 4.81
4173 4431 5.559770 TGTCATCTGATAAGGAAACAAGCA 58.440 37.500 0.00 0.00 0.00 3.91
4194 4452 7.066645 CACACTCAACCATGATCTTTCATATGT 59.933 37.037 1.90 0.00 40.70 2.29
4259 4517 2.185004 ACGGTGAAACTCCAATCAGG 57.815 50.000 0.00 0.00 36.74 3.86
4292 4550 1.277557 GAGCAGAAGTGGTGAGGATGT 59.722 52.381 0.00 0.00 33.41 3.06
4307 4565 0.321387 ACACACCAGCAGATGAGCAG 60.321 55.000 0.00 0.00 36.85 4.24
4365 4623 9.423964 CCCTCCTAAAACTCTTATACTCTAGTT 57.576 37.037 0.00 0.00 33.72 2.24
4366 4624 8.005976 CCCCTCCTAAAACTCTTATACTCTAGT 58.994 40.741 0.00 0.00 0.00 2.57
4367 4625 7.452189 CCCCCTCCTAAAACTCTTATACTCTAG 59.548 44.444 0.00 0.00 0.00 2.43
4368 4626 7.131542 TCCCCCTCCTAAAACTCTTATACTCTA 59.868 40.741 0.00 0.00 0.00 2.43
4369 4627 6.067781 TCCCCCTCCTAAAACTCTTATACTCT 60.068 42.308 0.00 0.00 0.00 3.24
4370 4628 6.141790 TCCCCCTCCTAAAACTCTTATACTC 58.858 44.000 0.00 0.00 0.00 2.59
4371 4629 6.067781 TCTCCCCCTCCTAAAACTCTTATACT 60.068 42.308 0.00 0.00 0.00 2.12
4372 4630 6.141790 TCTCCCCCTCCTAAAACTCTTATAC 58.858 44.000 0.00 0.00 0.00 1.47
4373 4631 6.365609 TCTCCCCCTCCTAAAACTCTTATA 57.634 41.667 0.00 0.00 0.00 0.98
4374 4632 5.236425 TCTCCCCCTCCTAAAACTCTTAT 57.764 43.478 0.00 0.00 0.00 1.73
4375 4633 4.704872 TCTCCCCCTCCTAAAACTCTTA 57.295 45.455 0.00 0.00 0.00 2.10
4376 4634 3.579742 TCTCCCCCTCCTAAAACTCTT 57.420 47.619 0.00 0.00 0.00 2.85
4377 4635 3.181394 AGTTCTCCCCCTCCTAAAACTCT 60.181 47.826 0.00 0.00 0.00 3.24
4388 4646 0.635009 TATCGGACAGTTCTCCCCCT 59.365 55.000 0.00 0.00 0.00 4.79
4391 4649 2.933573 TCTCTATCGGACAGTTCTCCC 58.066 52.381 0.00 0.00 0.00 4.30
4416 4675 3.554752 CGTTGGGGATGCAAGAAAAATGT 60.555 43.478 0.00 0.00 0.00 2.71
4429 4688 2.596046 TTTGTGCGCGTTGGGGAT 60.596 55.556 8.43 0.00 0.00 3.85
4488 4747 4.189231 GAGAGAGCGCCTTTTGGTTTATA 58.811 43.478 2.29 0.00 42.99 0.98
4489 4748 3.010420 GAGAGAGCGCCTTTTGGTTTAT 58.990 45.455 2.29 0.00 42.99 1.40
4490 4749 2.224426 TGAGAGAGCGCCTTTTGGTTTA 60.224 45.455 2.29 0.00 42.99 2.01
4686 4948 3.760151 TCTTTGAAGGATGCATCTGTTGG 59.240 43.478 25.28 10.50 0.00 3.77
4743 5025 3.181443 CCCCTACCGCCTTTATCAGAATT 60.181 47.826 0.00 0.00 0.00 2.17
4794 5078 4.279671 GGATGATGTACGGAGATTCAGAGT 59.720 45.833 0.00 0.00 0.00 3.24
4810 5094 3.019564 GGTGGAAAGGAACAGGATGATG 58.980 50.000 0.00 0.00 39.69 3.07
4828 5112 7.940850 TCCTCTTTTTGTAGATTTTGAAGGTG 58.059 34.615 0.00 0.00 0.00 4.00
4845 5129 2.646798 ACCAATGCTCCTCTCCTCTTTT 59.353 45.455 0.00 0.00 0.00 2.27
4872 5156 0.110192 GAGCGTTGCCTGTTGCTTAC 60.110 55.000 0.00 0.00 42.00 2.34
4873 5157 0.250295 AGAGCGTTGCCTGTTGCTTA 60.250 50.000 0.00 0.00 42.00 3.09
4874 5158 1.526917 AGAGCGTTGCCTGTTGCTT 60.527 52.632 0.00 0.00 42.00 3.91
4907 5191 1.213678 GTAAGTCGGGGGCCCTATTTT 59.786 52.381 24.38 14.48 0.00 1.82
4914 5198 2.271173 CTTGGTAAGTCGGGGGCC 59.729 66.667 0.00 0.00 0.00 5.80
4922 5207 0.392998 CGCCTCATGCCTTGGTAAGT 60.393 55.000 0.00 0.00 36.24 2.24
4926 5211 2.257409 CTACCGCCTCATGCCTTGGT 62.257 60.000 5.15 5.15 35.65 3.67
4930 5215 0.107654 GTTTCTACCGCCTCATGCCT 60.108 55.000 0.00 0.00 36.24 4.75
4941 5226 5.397142 TCCTTCGTTTCTAGGTTTCTACC 57.603 43.478 0.00 0.00 45.39 3.18
4944 5229 3.902467 ACCTCCTTCGTTTCTAGGTTTCT 59.098 43.478 0.00 0.00 37.25 2.52
4988 5273 0.165944 CGCTGGTTCCATGAAACGAC 59.834 55.000 0.00 0.00 30.91 4.34
4996 5281 1.906574 TCTTAGTTCCGCTGGTTCCAT 59.093 47.619 0.00 0.00 0.00 3.41
4997 5282 1.344065 TCTTAGTTCCGCTGGTTCCA 58.656 50.000 0.00 0.00 0.00 3.53
4998 5283 2.093658 TCATCTTAGTTCCGCTGGTTCC 60.094 50.000 0.00 0.00 0.00 3.62
4999 5284 3.247006 TCATCTTAGTTCCGCTGGTTC 57.753 47.619 0.00 0.00 0.00 3.62
5000 5285 3.244422 TGTTCATCTTAGTTCCGCTGGTT 60.244 43.478 0.00 0.00 0.00 3.67
5001 5286 2.301870 TGTTCATCTTAGTTCCGCTGGT 59.698 45.455 0.00 0.00 0.00 4.00
5002 5287 2.673368 GTGTTCATCTTAGTTCCGCTGG 59.327 50.000 0.00 0.00 0.00 4.85
5003 5288 2.345641 CGTGTTCATCTTAGTTCCGCTG 59.654 50.000 0.00 0.00 0.00 5.18
5004 5289 2.607187 CGTGTTCATCTTAGTTCCGCT 58.393 47.619 0.00 0.00 0.00 5.52
5005 5290 1.060698 GCGTGTTCATCTTAGTTCCGC 59.939 52.381 0.00 0.00 0.00 5.54
5006 5291 2.333926 TGCGTGTTCATCTTAGTTCCG 58.666 47.619 0.00 0.00 0.00 4.30
5007 5292 4.391830 TGATTGCGTGTTCATCTTAGTTCC 59.608 41.667 0.00 0.00 0.00 3.62
5008 5293 5.120830 ACTGATTGCGTGTTCATCTTAGTTC 59.879 40.000 0.00 0.00 0.00 3.01
5009 5294 4.997395 ACTGATTGCGTGTTCATCTTAGTT 59.003 37.500 0.00 0.00 0.00 2.24
5010 5295 4.389992 CACTGATTGCGTGTTCATCTTAGT 59.610 41.667 0.00 0.00 0.00 2.24
5011 5296 4.726021 GCACTGATTGCGTGTTCATCTTAG 60.726 45.833 0.00 0.00 42.79 2.18
5012 5297 3.125146 GCACTGATTGCGTGTTCATCTTA 59.875 43.478 0.00 0.00 42.79 2.10
5013 5298 2.095567 GCACTGATTGCGTGTTCATCTT 60.096 45.455 0.00 0.00 42.79 2.40
5014 5299 1.466167 GCACTGATTGCGTGTTCATCT 59.534 47.619 0.00 0.00 42.79 2.90
5015 5300 1.887320 GCACTGATTGCGTGTTCATC 58.113 50.000 0.00 0.00 42.79 2.92
5059 5344 1.674962 CCGAGGAAGTTAGGAGGTACG 59.325 57.143 0.00 0.00 0.00 3.67
5094 5379 4.821589 CAGTTCGCTCCCCCTCGC 62.822 72.222 0.00 0.00 0.00 5.03
5101 5386 4.821589 CTCCCGCCAGTTCGCTCC 62.822 72.222 0.00 0.00 0.00 4.70
5102 5387 3.760035 TCTCCCGCCAGTTCGCTC 61.760 66.667 0.00 0.00 0.00 5.03
5103 5388 4.070552 GTCTCCCGCCAGTTCGCT 62.071 66.667 0.00 0.00 0.00 4.93
5216 5530 3.899064 GAAACCGAAACGTCGCCGC 62.899 63.158 0.00 0.00 46.28 6.53
5222 5536 0.932399 CCACTTCGAAACCGAAACGT 59.068 50.000 0.00 0.00 44.25 3.99
5223 5537 0.233848 CCCACTTCGAAACCGAAACG 59.766 55.000 0.00 0.00 44.25 3.60
5226 5540 1.598685 GCCCCACTTCGAAACCGAA 60.599 57.895 0.00 0.00 42.95 4.30
5227 5541 2.031465 GCCCCACTTCGAAACCGA 59.969 61.111 0.00 0.00 0.00 4.69
5228 5542 3.053896 GGCCCCACTTCGAAACCG 61.054 66.667 0.00 0.00 0.00 4.44
5229 5543 2.675423 GGGCCCCACTTCGAAACC 60.675 66.667 12.23 0.00 0.00 3.27
5230 5544 2.675423 GGGGCCCCACTTCGAAAC 60.675 66.667 37.61 3.27 35.81 2.78
5231 5545 2.856988 AGGGGCCCCACTTCGAAA 60.857 61.111 42.48 0.00 38.92 3.46
5232 5546 3.646715 CAGGGGCCCCACTTCGAA 61.647 66.667 42.48 0.00 38.92 3.71
5233 5547 4.974438 ACAGGGGCCCCACTTCGA 62.974 66.667 42.48 0.00 38.92 3.71
5234 5548 4.722700 CACAGGGGCCCCACTTCG 62.723 72.222 42.48 25.47 38.92 3.79
5235 5549 3.256960 TCACAGGGGCCCCACTTC 61.257 66.667 42.48 15.96 38.92 3.01
5236 5550 3.260100 CTCACAGGGGCCCCACTT 61.260 66.667 42.48 23.25 38.92 3.16
5246 5560 0.321653 CTCCCGTTTTCCCTCACAGG 60.322 60.000 0.00 0.00 34.30 4.00
5280 5594 1.315690 CCCAGGTAGACGATTAGCGA 58.684 55.000 0.00 0.00 44.57 4.93
5284 5598 0.106569 TCGGCCCAGGTAGACGATTA 60.107 55.000 0.00 0.00 0.00 1.75
5285 5599 1.380785 TCGGCCCAGGTAGACGATT 60.381 57.895 0.00 0.00 0.00 3.34
5289 5603 1.833787 TTTGGTCGGCCCAGGTAGAC 61.834 60.000 2.12 0.00 46.31 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.