Multiple sequence alignment - TraesCS7B01G117500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G117500 chr7B 100.000 3278 0 0 1 3278 137226820 137230097 0.000000e+00 6054.0
1 TraesCS7B01G117500 chr7B 86.834 638 71 12 2648 3278 203131314 203130683 0.000000e+00 701.0
2 TraesCS7B01G117500 chr7B 99.640 278 1 0 3001 3278 526670816 526670539 2.920000e-140 508.0
3 TraesCS7B01G117500 chr7B 90.173 173 13 1 1635 1803 553147581 553147409 4.260000e-54 222.0
4 TraesCS7B01G117500 chr7B 89.773 88 8 1 1522 1609 553150358 553150444 9.610000e-21 111.0
5 TraesCS7B01G117500 chr7A 87.608 2308 211 49 12 2286 173702478 173704743 0.000000e+00 2608.0
6 TraesCS7B01G117500 chr7D 94.209 1675 71 10 627 2291 170866586 170868244 0.000000e+00 2532.0
7 TraesCS7B01G117500 chr7D 94.444 36 0 2 1038 1072 453306599 453306565 2.000000e-03 54.7
8 TraesCS7B01G117500 chr5B 85.420 583 76 8 2654 3233 161565261 161564685 6.050000e-167 597.0
9 TraesCS7B01G117500 chr2D 81.913 669 75 17 1618 2286 442450252 442449630 1.040000e-144 523.0
10 TraesCS7B01G117500 chr2D 87.644 348 42 1 1550 1897 629618678 629618332 1.420000e-108 403.0
11 TraesCS7B01G117500 chr2D 94.444 36 0 2 1038 1072 442450292 442450258 2.000000e-03 54.7
12 TraesCS7B01G117500 chr3B 98.947 285 3 0 2994 3278 777288718 777289002 8.110000e-141 510.0
13 TraesCS7B01G117500 chr3B 95.425 306 10 4 2974 3278 411693198 411692896 4.920000e-133 484.0
14 TraesCS7B01G117500 chr6B 99.286 280 2 0 2999 3278 157441382 157441661 1.050000e-139 507.0
15 TraesCS7B01G117500 chr6B 99.283 279 1 1 3001 3278 402031430 402031152 1.360000e-138 503.0
16 TraesCS7B01G117500 chr6B 97.611 293 5 2 2987 3278 189796937 189796646 4.880000e-138 501.0
17 TraesCS7B01G117500 chr6B 87.887 355 43 0 2647 3001 147674666 147674312 5.060000e-113 418.0
18 TraesCS7B01G117500 chr4B 97.611 293 5 2 2987 3278 474274088 474274379 4.880000e-138 501.0
19 TraesCS7B01G117500 chr4B 88.451 355 39 2 2647 3001 600233699 600233347 8.410000e-116 427.0
20 TraesCS7B01G117500 chr3D 88.333 360 37 4 2642 2998 481677831 481678188 8.410000e-116 427.0
21 TraesCS7B01G117500 chr4D 88.451 355 38 3 2646 2999 98586308 98585956 3.020000e-115 425.0
22 TraesCS7B01G117500 chr4D 87.778 360 40 4 2642 2999 219964507 219964864 5.060000e-113 418.0
23 TraesCS7B01G117500 chr5A 88.319 351 40 1 2646 2996 457072281 457072630 1.410000e-113 420.0
24 TraesCS7B01G117500 chr3A 87.955 357 40 3 2646 3001 365968836 365969190 5.060000e-113 418.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G117500 chr7B 137226820 137230097 3277 False 6054.00 6054 100.0000 1 3278 1 chr7B.!!$F1 3277
1 TraesCS7B01G117500 chr7B 203130683 203131314 631 True 701.00 701 86.8340 2648 3278 1 chr7B.!!$R1 630
2 TraesCS7B01G117500 chr7A 173702478 173704743 2265 False 2608.00 2608 87.6080 12 2286 1 chr7A.!!$F1 2274
3 TraesCS7B01G117500 chr7D 170866586 170868244 1658 False 2532.00 2532 94.2090 627 2291 1 chr7D.!!$F1 1664
4 TraesCS7B01G117500 chr5B 161564685 161565261 576 True 597.00 597 85.4200 2654 3233 1 chr5B.!!$R1 579
5 TraesCS7B01G117500 chr2D 442449630 442450292 662 True 288.85 523 88.1785 1038 2286 2 chr2D.!!$R2 1248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 718 0.041047 CGGCCACGTTCATGCATATG 60.041 55.0 2.24 0.0 33.76 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2504 2552 0.036294 GGAAGGACAAAGGGAGGACG 60.036 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 9.838339 TCTTTTTCTTACCAAATATTTGCCAAA 57.162 25.926 20.67 13.07 36.86 3.28
103 105 7.814264 ACCAAATATTTGCCAAATTTTGTCA 57.186 28.000 20.67 0.00 36.86 3.58
106 108 9.525409 CCAAATATTTGCCAAATTTTGTCAAAA 57.475 25.926 18.74 12.97 36.86 2.44
246 250 6.530887 AGAAACATTTGGCAATTTGTTTTTGC 59.469 30.769 27.88 20.29 46.82 3.68
248 252 6.690194 ACATTTGGCAATTTGTTTTTGCTA 57.310 29.167 0.00 0.00 46.74 3.49
249 253 6.727215 ACATTTGGCAATTTGTTTTTGCTAG 58.273 32.000 0.00 0.00 46.74 3.42
313 318 4.853924 TCTTGAAACTTTCCCAGAATGC 57.146 40.909 0.00 0.00 31.97 3.56
314 319 4.214310 TCTTGAAACTTTCCCAGAATGCA 58.786 39.130 0.00 0.00 31.97 3.96
323 328 6.426587 ACTTTCCCAGAATGCATAGTATTGT 58.573 36.000 0.00 0.00 31.97 2.71
327 332 8.815565 TTCCCAGAATGCATAGTATTGTTTTA 57.184 30.769 0.00 0.00 31.97 1.52
330 335 9.467258 CCCAGAATGCATAGTATTGTTTTATTG 57.533 33.333 0.00 0.00 31.97 1.90
332 337 8.971321 CAGAATGCATAGTATTGTTTTATTGCC 58.029 33.333 0.00 0.00 0.00 4.52
350 355 4.890499 TGCCTTATAGAATTTTCCCCCA 57.110 40.909 0.00 0.00 0.00 4.96
351 356 5.213868 TGCCTTATAGAATTTTCCCCCAA 57.786 39.130 0.00 0.00 0.00 4.12
352 357 5.594777 TGCCTTATAGAATTTTCCCCCAAA 58.405 37.500 0.00 0.00 0.00 3.28
353 358 6.026186 TGCCTTATAGAATTTTCCCCCAAAA 58.974 36.000 0.00 0.00 38.38 2.44
354 359 6.502158 TGCCTTATAGAATTTTCCCCCAAAAA 59.498 34.615 0.00 0.00 37.52 1.94
378 383 7.461182 AATATTGAAACTTCGGATGTTTGGA 57.539 32.000 22.05 12.73 37.70 3.53
382 387 5.967088 TGAAACTTCGGATGTTTGGAAAAA 58.033 33.333 22.05 3.41 37.70 1.94
417 425 3.071874 TCAGAAATCAGATTTGGCGGT 57.928 42.857 13.38 0.00 31.47 5.68
418 426 4.214986 TCAGAAATCAGATTTGGCGGTA 57.785 40.909 13.38 0.00 31.47 4.02
423 431 6.813152 CAGAAATCAGATTTGGCGGTAATTTT 59.187 34.615 13.38 0.00 31.47 1.82
425 433 6.530019 AATCAGATTTGGCGGTAATTTTCT 57.470 33.333 0.00 0.00 0.00 2.52
464 472 5.049828 GGTTGTGAAACTTTCCCAGAATTG 58.950 41.667 0.00 0.00 38.04 2.32
467 475 7.262048 GTTGTGAAACTTTCCCAGAATTGTAA 58.738 34.615 0.00 0.00 38.04 2.41
471 479 8.626526 GTGAAACTTTCCCAGAATTGTAAGTAA 58.373 33.333 0.00 0.00 0.00 2.24
528 539 7.428020 TCTGGAATTCTGAATGTTCACAAAAG 58.572 34.615 3.22 0.00 32.90 2.27
531 542 8.040132 TGGAATTCTGAATGTTCACAAAAGTTT 58.960 29.630 3.22 0.00 32.90 2.66
532 543 8.882736 GGAATTCTGAATGTTCACAAAAGTTTT 58.117 29.630 3.22 0.00 32.90 2.43
553 572 6.422776 TTTTTGGCACGAAATAAAAGCAAA 57.577 29.167 0.00 0.00 0.00 3.68
554 573 6.422776 TTTTGGCACGAAATAAAAGCAAAA 57.577 29.167 0.00 0.00 0.00 2.44
555 574 5.649602 TTGGCACGAAATAAAAGCAAAAG 57.350 34.783 0.00 0.00 0.00 2.27
556 575 4.054671 TGGCACGAAATAAAAGCAAAAGG 58.945 39.130 0.00 0.00 0.00 3.11
557 576 4.202161 TGGCACGAAATAAAAGCAAAAGGA 60.202 37.500 0.00 0.00 0.00 3.36
563 582 6.863126 ACGAAATAAAAGCAAAAGGACATGAG 59.137 34.615 0.00 0.00 0.00 2.90
574 593 3.146104 AGGACATGAGTTTGAGGTTGG 57.854 47.619 0.00 0.00 0.00 3.77
589 620 5.976458 TGAGGTTGGAATATTGCAATTTCC 58.024 37.500 28.31 28.31 40.59 3.13
609 640 2.695359 CACTAATGTGGGTAACGTGCT 58.305 47.619 0.00 0.00 40.33 4.40
611 642 2.565834 ACTAATGTGGGTAACGTGCTCT 59.434 45.455 0.00 0.00 37.60 4.09
615 646 0.389948 GTGGGTAACGTGCTCTCCTG 60.390 60.000 0.00 0.00 37.60 3.86
621 652 1.583054 AACGTGCTCTCCTGAACAAC 58.417 50.000 0.00 0.00 0.00 3.32
623 654 1.134521 ACGTGCTCTCCTGAACAACAA 60.135 47.619 0.00 0.00 0.00 2.83
624 655 1.261619 CGTGCTCTCCTGAACAACAAC 59.738 52.381 0.00 0.00 0.00 3.32
625 656 2.565841 GTGCTCTCCTGAACAACAACT 58.434 47.619 0.00 0.00 0.00 3.16
657 688 9.832445 ATATTAATCGACCAAGAAACATACTGT 57.168 29.630 0.00 0.00 0.00 3.55
659 690 9.832445 ATTAATCGACCAAGAAACATACTGTAT 57.168 29.630 0.00 0.00 0.00 2.29
660 691 7.539712 AATCGACCAAGAAACATACTGTATG 57.460 36.000 22.76 22.76 41.88 2.39
685 716 2.468670 GCGGCCACGTTCATGCATA 61.469 57.895 2.24 0.00 43.45 3.14
686 717 1.785041 GCGGCCACGTTCATGCATAT 61.785 55.000 2.24 0.00 43.45 1.78
687 718 0.041047 CGGCCACGTTCATGCATATG 60.041 55.000 2.24 0.00 33.76 1.78
688 719 0.318107 GGCCACGTTCATGCATATGC 60.318 55.000 21.09 21.09 42.50 3.14
740 781 1.202973 GATCACGCACATCTCGTCCG 61.203 60.000 0.00 0.00 38.19 4.79
802 844 1.079503 GACTTGTCGATGTCAAGGGC 58.920 55.000 16.04 6.47 44.29 5.19
877 919 8.783093 AGAATCGAGATCATACTATGCTATAGC 58.217 37.037 18.18 18.18 42.50 2.97
882 924 7.275888 AGATCATACTATGCTATAGCTCAGC 57.724 40.000 24.61 12.25 42.66 4.26
968 1010 5.091552 AGACTAGAGACCCATAAACACCAA 58.908 41.667 0.00 0.00 0.00 3.67
969 1011 5.726793 AGACTAGAGACCCATAAACACCAAT 59.273 40.000 0.00 0.00 0.00 3.16
970 1012 6.215636 AGACTAGAGACCCATAAACACCAATT 59.784 38.462 0.00 0.00 0.00 2.32
976 1024 4.086457 ACCCATAAACACCAATTCCAGTC 58.914 43.478 0.00 0.00 0.00 3.51
1021 1069 1.120530 GATTCCTTCCCTCGGCACTA 58.879 55.000 0.00 0.00 0.00 2.74
1084 1132 0.249868 CACACCTGTTTCCGCTCTCA 60.250 55.000 0.00 0.00 0.00 3.27
1103 1151 2.364317 TGCCCTCCTCTTCCTCGG 60.364 66.667 0.00 0.00 0.00 4.63
1166 1214 2.279918 GCACACCACCTCGTCGTT 60.280 61.111 0.00 0.00 0.00 3.85
1412 1460 0.457853 CGCTTCTTCCGGATCGTTCA 60.458 55.000 4.15 0.00 0.00 3.18
1575 1623 1.257743 CCGTCTCCTTCTTCTGGACA 58.742 55.000 0.00 0.00 0.00 4.02
1656 1704 3.692406 GGAGAGGTGTTCGCCGGT 61.692 66.667 1.90 0.00 35.98 5.28
1699 1747 4.193334 CCGACGAGCGCTGGATGA 62.193 66.667 26.95 0.00 39.11 2.92
1904 1952 2.434359 GGGCTTCGACGGGTTCAG 60.434 66.667 0.00 0.00 0.00 3.02
1905 1953 3.119096 GGCTTCGACGGGTTCAGC 61.119 66.667 0.00 0.00 0.00 4.26
1944 1992 2.125673 GTGGCACCGACGCACTAT 60.126 61.111 6.29 0.00 0.00 2.12
1995 2043 4.379243 CCGGACACTCAGCCGCTT 62.379 66.667 0.00 0.00 45.93 4.68
2064 2112 2.759795 GCCCAGCTGGAGGAGTTT 59.240 61.111 34.91 0.00 37.39 2.66
2082 2130 2.849096 TTAGAGCGGCGGAGGAGGAA 62.849 60.000 9.78 0.00 0.00 3.36
2239 2287 0.672342 CTTACCCGGACCGATCGATT 59.328 55.000 18.66 2.17 0.00 3.34
2256 2304 1.537202 GATTTGTGGAACGAGCTGCTT 59.463 47.619 2.53 0.00 42.39 3.91
2287 2335 2.401766 GCCGGTTAGACTCGTCGGA 61.402 63.158 1.90 0.00 42.94 4.55
2291 2339 1.669779 CGGTTAGACTCGTCGGATTCT 59.330 52.381 0.00 0.00 36.33 2.40
2292 2340 2.097142 CGGTTAGACTCGTCGGATTCTT 59.903 50.000 0.00 0.00 34.42 2.52
2293 2341 3.436496 GGTTAGACTCGTCGGATTCTTG 58.564 50.000 0.00 0.00 34.42 3.02
2294 2342 2.846039 TAGACTCGTCGGATTCTTGC 57.154 50.000 0.00 0.00 34.42 4.01
2295 2343 0.888619 AGACTCGTCGGATTCTTGCA 59.111 50.000 0.00 0.00 28.62 4.08
2296 2344 1.478510 AGACTCGTCGGATTCTTGCAT 59.521 47.619 0.00 0.00 28.62 3.96
2297 2345 1.590238 GACTCGTCGGATTCTTGCATG 59.410 52.381 0.00 0.00 0.00 4.06
2298 2346 1.204704 ACTCGTCGGATTCTTGCATGA 59.795 47.619 0.00 0.00 0.00 3.07
2299 2347 2.270923 CTCGTCGGATTCTTGCATGAA 58.729 47.619 16.45 16.45 0.00 2.57
2300 2348 2.868583 CTCGTCGGATTCTTGCATGAAT 59.131 45.455 23.57 23.57 39.14 2.57
2301 2349 3.270027 TCGTCGGATTCTTGCATGAATT 58.730 40.909 24.00 11.54 36.86 2.17
2302 2350 3.689161 TCGTCGGATTCTTGCATGAATTT 59.311 39.130 24.00 8.42 36.86 1.82
2303 2351 4.155826 TCGTCGGATTCTTGCATGAATTTT 59.844 37.500 24.00 7.76 36.86 1.82
2304 2352 4.496895 CGTCGGATTCTTGCATGAATTTTC 59.503 41.667 24.00 14.85 36.86 2.29
2305 2353 4.496895 GTCGGATTCTTGCATGAATTTTCG 59.503 41.667 24.00 23.97 36.86 3.46
2306 2354 3.241322 CGGATTCTTGCATGAATTTTCGC 59.759 43.478 24.00 13.42 36.86 4.70
2307 2355 3.553105 GGATTCTTGCATGAATTTTCGCC 59.447 43.478 24.00 17.46 36.86 5.54
2308 2356 3.940209 TTCTTGCATGAATTTTCGCCT 57.060 38.095 10.76 0.00 0.00 5.52
2309 2357 5.450412 GGATTCTTGCATGAATTTTCGCCTA 60.450 40.000 24.00 0.00 36.86 3.93
2310 2358 4.621068 TCTTGCATGAATTTTCGCCTAG 57.379 40.909 0.00 0.00 0.00 3.02
2311 2359 2.849880 TGCATGAATTTTCGCCTAGC 57.150 45.000 0.00 0.00 0.00 3.42
2312 2360 1.405105 TGCATGAATTTTCGCCTAGCC 59.595 47.619 0.00 0.00 0.00 3.93
2313 2361 1.678101 GCATGAATTTTCGCCTAGCCT 59.322 47.619 0.00 0.00 0.00 4.58
2314 2362 2.287248 GCATGAATTTTCGCCTAGCCTC 60.287 50.000 0.00 0.00 0.00 4.70
2315 2363 2.779755 TGAATTTTCGCCTAGCCTCA 57.220 45.000 0.00 0.00 0.00 3.86
2316 2364 2.356135 TGAATTTTCGCCTAGCCTCAC 58.644 47.619 0.00 0.00 0.00 3.51
2317 2365 2.290008 TGAATTTTCGCCTAGCCTCACA 60.290 45.455 0.00 0.00 0.00 3.58
2318 2366 2.717639 ATTTTCGCCTAGCCTCACAT 57.282 45.000 0.00 0.00 0.00 3.21
2319 2367 1.737838 TTTTCGCCTAGCCTCACATG 58.262 50.000 0.00 0.00 0.00 3.21
2320 2368 0.613260 TTTCGCCTAGCCTCACATGT 59.387 50.000 0.00 0.00 0.00 3.21
2321 2369 1.480789 TTCGCCTAGCCTCACATGTA 58.519 50.000 0.00 0.00 0.00 2.29
2322 2370 1.480789 TCGCCTAGCCTCACATGTAA 58.519 50.000 0.00 0.00 0.00 2.41
2323 2371 1.828595 TCGCCTAGCCTCACATGTAAA 59.171 47.619 0.00 0.00 0.00 2.01
2324 2372 2.235155 TCGCCTAGCCTCACATGTAAAA 59.765 45.455 0.00 0.00 0.00 1.52
2325 2373 2.609459 CGCCTAGCCTCACATGTAAAAG 59.391 50.000 0.00 0.00 0.00 2.27
2326 2374 2.945668 GCCTAGCCTCACATGTAAAAGG 59.054 50.000 14.02 14.02 0.00 3.11
2327 2375 3.622455 GCCTAGCCTCACATGTAAAAGGT 60.622 47.826 17.68 8.09 0.00 3.50
2328 2376 4.589908 CCTAGCCTCACATGTAAAAGGTT 58.410 43.478 17.68 15.27 0.00 3.50
2329 2377 4.636206 CCTAGCCTCACATGTAAAAGGTTC 59.364 45.833 17.68 6.73 0.00 3.62
2330 2378 4.373156 AGCCTCACATGTAAAAGGTTCT 57.627 40.909 17.68 8.37 0.00 3.01
2331 2379 4.729868 AGCCTCACATGTAAAAGGTTCTT 58.270 39.130 17.68 4.45 0.00 2.52
2332 2380 4.762251 AGCCTCACATGTAAAAGGTTCTTC 59.238 41.667 17.68 5.68 0.00 2.87
2333 2381 4.518970 GCCTCACATGTAAAAGGTTCTTCA 59.481 41.667 17.68 0.00 0.00 3.02
2334 2382 5.009610 GCCTCACATGTAAAAGGTTCTTCAA 59.990 40.000 17.68 0.00 0.00 2.69
2335 2383 6.294731 GCCTCACATGTAAAAGGTTCTTCAAT 60.295 38.462 17.68 0.00 0.00 2.57
2336 2384 7.661040 CCTCACATGTAAAAGGTTCTTCAATT 58.339 34.615 0.00 0.00 0.00 2.32
2337 2385 8.143835 CCTCACATGTAAAAGGTTCTTCAATTT 58.856 33.333 0.00 0.00 0.00 1.82
2338 2386 9.533253 CTCACATGTAAAAGGTTCTTCAATTTT 57.467 29.630 0.00 0.00 0.00 1.82
2339 2387 9.883142 TCACATGTAAAAGGTTCTTCAATTTTT 57.117 25.926 0.00 0.00 0.00 1.94
2346 2394 8.722480 AAAAGGTTCTTCAATTTTTCTCTTGG 57.278 30.769 0.00 0.00 0.00 3.61
2347 2395 5.847304 AGGTTCTTCAATTTTTCTCTTGGC 58.153 37.500 0.00 0.00 0.00 4.52
2348 2396 5.600069 AGGTTCTTCAATTTTTCTCTTGGCT 59.400 36.000 0.00 0.00 0.00 4.75
2349 2397 5.693555 GGTTCTTCAATTTTTCTCTTGGCTG 59.306 40.000 0.00 0.00 0.00 4.85
2350 2398 6.276091 GTTCTTCAATTTTTCTCTTGGCTGT 58.724 36.000 0.00 0.00 0.00 4.40
2351 2399 5.835257 TCTTCAATTTTTCTCTTGGCTGTG 58.165 37.500 0.00 0.00 0.00 3.66
2352 2400 3.981211 TCAATTTTTCTCTTGGCTGTGC 58.019 40.909 0.00 0.00 0.00 4.57
2353 2401 3.638160 TCAATTTTTCTCTTGGCTGTGCT 59.362 39.130 0.00 0.00 0.00 4.40
2354 2402 4.826733 TCAATTTTTCTCTTGGCTGTGCTA 59.173 37.500 0.00 0.00 0.00 3.49
2355 2403 5.477984 TCAATTTTTCTCTTGGCTGTGCTAT 59.522 36.000 0.00 0.00 0.00 2.97
2356 2404 4.771590 TTTTTCTCTTGGCTGTGCTATG 57.228 40.909 0.00 0.00 0.00 2.23
2357 2405 3.701205 TTTCTCTTGGCTGTGCTATGA 57.299 42.857 0.00 0.00 0.00 2.15
2358 2406 2.975732 TCTCTTGGCTGTGCTATGAG 57.024 50.000 10.85 10.85 40.65 2.90
2359 2407 1.483827 TCTCTTGGCTGTGCTATGAGG 59.516 52.381 14.97 2.46 40.07 3.86
2360 2408 1.209019 CTCTTGGCTGTGCTATGAGGT 59.791 52.381 9.72 0.00 37.55 3.85
2361 2409 1.208052 TCTTGGCTGTGCTATGAGGTC 59.792 52.381 0.00 0.00 0.00 3.85
2362 2410 0.983467 TTGGCTGTGCTATGAGGTCA 59.017 50.000 0.00 0.00 0.00 4.02
2363 2411 0.983467 TGGCTGTGCTATGAGGTCAA 59.017 50.000 0.00 0.00 0.00 3.18
2364 2412 1.339055 TGGCTGTGCTATGAGGTCAAC 60.339 52.381 0.00 0.00 0.00 3.18
2365 2413 1.065854 GGCTGTGCTATGAGGTCAACT 60.066 52.381 0.00 0.00 0.00 3.16
2366 2414 2.275318 GCTGTGCTATGAGGTCAACTC 58.725 52.381 0.00 0.00 46.78 3.01
2367 2415 2.898705 CTGTGCTATGAGGTCAACTCC 58.101 52.381 0.00 0.00 46.01 3.85
2368 2416 2.234661 CTGTGCTATGAGGTCAACTCCA 59.765 50.000 0.00 0.00 46.01 3.86
2369 2417 2.234661 TGTGCTATGAGGTCAACTCCAG 59.765 50.000 0.00 0.00 46.01 3.86
2370 2418 1.208052 TGCTATGAGGTCAACTCCAGC 59.792 52.381 6.48 6.48 46.01 4.85
2371 2419 1.804372 GCTATGAGGTCAACTCCAGCG 60.804 57.143 0.00 0.00 46.01 5.18
2372 2420 0.824109 TATGAGGTCAACTCCAGCGG 59.176 55.000 0.00 0.00 46.01 5.52
2373 2421 0.904865 ATGAGGTCAACTCCAGCGGA 60.905 55.000 0.00 0.00 46.01 5.54
2374 2422 0.904865 TGAGGTCAACTCCAGCGGAT 60.905 55.000 0.00 0.00 46.01 4.18
2375 2423 1.112113 GAGGTCAACTCCAGCGGATA 58.888 55.000 0.00 0.00 40.49 2.59
2376 2424 1.067821 GAGGTCAACTCCAGCGGATAG 59.932 57.143 0.00 0.00 40.49 2.08
2377 2425 1.112113 GGTCAACTCCAGCGGATAGA 58.888 55.000 0.00 0.00 0.00 1.98
2378 2426 1.202428 GGTCAACTCCAGCGGATAGAC 60.202 57.143 11.79 11.79 0.00 2.59
2379 2427 0.738975 TCAACTCCAGCGGATAGACG 59.261 55.000 0.00 0.00 0.00 4.18
2390 2438 1.784856 CGGATAGACGCATTTGGTACG 59.215 52.381 0.00 0.00 0.00 3.67
2391 2439 2.797087 CGGATAGACGCATTTGGTACGT 60.797 50.000 0.00 0.00 43.83 3.57
2392 2440 3.192466 GGATAGACGCATTTGGTACGTT 58.808 45.455 0.00 0.00 40.69 3.99
2393 2441 3.244579 GGATAGACGCATTTGGTACGTTC 59.755 47.826 0.00 0.00 40.69 3.95
2394 2442 1.435577 AGACGCATTTGGTACGTTCC 58.564 50.000 3.92 3.92 40.69 3.62
2395 2443 1.149987 GACGCATTTGGTACGTTCCA 58.850 50.000 10.19 10.19 40.69 3.53
2396 2444 0.869730 ACGCATTTGGTACGTTCCAC 59.130 50.000 14.09 1.43 36.46 4.02
2397 2445 0.869068 CGCATTTGGTACGTTCCACA 59.131 50.000 14.09 8.06 37.20 4.17
2398 2446 1.466950 CGCATTTGGTACGTTCCACAT 59.533 47.619 14.09 10.26 37.20 3.21
2399 2447 2.475519 CGCATTTGGTACGTTCCACATC 60.476 50.000 14.09 6.58 37.20 3.06
2400 2448 2.747446 GCATTTGGTACGTTCCACATCT 59.253 45.455 14.09 0.00 37.20 2.90
2401 2449 3.936453 GCATTTGGTACGTTCCACATCTA 59.064 43.478 14.09 0.00 37.20 1.98
2402 2450 4.574828 GCATTTGGTACGTTCCACATCTAT 59.425 41.667 14.09 0.48 37.20 1.98
2403 2451 5.065988 GCATTTGGTACGTTCCACATCTATT 59.934 40.000 14.09 0.00 37.20 1.73
2404 2452 6.486248 CATTTGGTACGTTCCACATCTATTG 58.514 40.000 14.09 2.36 37.20 1.90
2405 2453 4.131649 TGGTACGTTCCACATCTATTGG 57.868 45.455 10.19 0.00 35.18 3.16
2406 2454 3.516300 TGGTACGTTCCACATCTATTGGT 59.484 43.478 10.19 0.00 35.42 3.67
2407 2455 4.117685 GGTACGTTCCACATCTATTGGTC 58.882 47.826 6.31 0.00 35.42 4.02
2408 2456 3.261981 ACGTTCCACATCTATTGGTCC 57.738 47.619 0.00 0.00 35.42 4.46
2409 2457 2.201732 CGTTCCACATCTATTGGTCCG 58.798 52.381 0.00 0.00 35.42 4.79
2410 2458 1.940613 GTTCCACATCTATTGGTCCGC 59.059 52.381 0.00 0.00 35.42 5.54
2411 2459 1.199615 TCCACATCTATTGGTCCGCA 58.800 50.000 0.00 0.00 35.42 5.69
2412 2460 1.768275 TCCACATCTATTGGTCCGCAT 59.232 47.619 0.00 0.00 35.42 4.73
2413 2461 1.875514 CCACATCTATTGGTCCGCATG 59.124 52.381 0.00 0.00 0.00 4.06
2414 2462 1.875514 CACATCTATTGGTCCGCATGG 59.124 52.381 0.00 0.00 0.00 3.66
2415 2463 1.768275 ACATCTATTGGTCCGCATGGA 59.232 47.619 0.00 0.00 43.88 3.41
2424 2472 3.531821 TCCGCATGGACCAGATAGA 57.468 52.632 0.00 0.00 40.17 1.98
2425 2473 2.015456 TCCGCATGGACCAGATAGAT 57.985 50.000 0.00 0.00 40.17 1.98
2426 2474 1.620323 TCCGCATGGACCAGATAGATG 59.380 52.381 0.00 0.00 40.17 2.90
2427 2475 1.345741 CCGCATGGACCAGATAGATGT 59.654 52.381 0.00 0.00 37.49 3.06
2428 2476 2.224378 CCGCATGGACCAGATAGATGTT 60.224 50.000 0.00 0.00 37.49 2.71
2429 2477 3.062763 CGCATGGACCAGATAGATGTTC 58.937 50.000 0.00 0.00 0.00 3.18
2430 2478 3.062763 GCATGGACCAGATAGATGTTCG 58.937 50.000 0.00 0.00 0.00 3.95
2431 2479 3.493350 GCATGGACCAGATAGATGTTCGT 60.493 47.826 0.00 0.00 0.00 3.85
2432 2480 4.697514 CATGGACCAGATAGATGTTCGTT 58.302 43.478 0.00 0.00 0.00 3.85
2433 2481 4.819105 TGGACCAGATAGATGTTCGTTT 57.181 40.909 0.00 0.00 0.00 3.60
2434 2482 5.160607 TGGACCAGATAGATGTTCGTTTT 57.839 39.130 0.00 0.00 0.00 2.43
2435 2483 5.556915 TGGACCAGATAGATGTTCGTTTTT 58.443 37.500 0.00 0.00 0.00 1.94
2456 2504 3.773418 TTTCCACCGTGACCTATTTCA 57.227 42.857 0.00 0.00 0.00 2.69
2457 2505 3.328382 TTCCACCGTGACCTATTTCAG 57.672 47.619 0.00 0.00 0.00 3.02
2469 2517 4.141233 CCTATTTCAGGCCCAAATTTGG 57.859 45.455 27.46 27.46 40.95 3.28
2480 2528 3.885724 CCAAATTTGGGCCGAGTTTAT 57.114 42.857 26.87 0.00 44.70 1.40
2481 2529 3.520569 CCAAATTTGGGCCGAGTTTATG 58.479 45.455 26.87 4.15 44.70 1.90
2482 2530 3.520569 CAAATTTGGGCCGAGTTTATGG 58.479 45.455 13.36 0.00 0.00 2.74
2483 2531 2.818751 ATTTGGGCCGAGTTTATGGA 57.181 45.000 0.00 0.00 0.00 3.41
2484 2532 2.818751 TTTGGGCCGAGTTTATGGAT 57.181 45.000 0.00 0.00 0.00 3.41
2485 2533 2.051334 TTGGGCCGAGTTTATGGATG 57.949 50.000 0.00 0.00 0.00 3.51
2486 2534 0.182537 TGGGCCGAGTTTATGGATGG 59.817 55.000 0.00 0.00 0.00 3.51
2487 2535 0.537371 GGGCCGAGTTTATGGATGGG 60.537 60.000 0.00 0.00 0.00 4.00
2488 2536 0.182775 GGCCGAGTTTATGGATGGGT 59.817 55.000 0.00 0.00 0.00 4.51
2489 2537 1.594331 GCCGAGTTTATGGATGGGTC 58.406 55.000 0.00 0.00 0.00 4.46
2490 2538 1.865865 CCGAGTTTATGGATGGGTCG 58.134 55.000 0.00 0.00 0.00 4.79
2491 2539 1.138266 CCGAGTTTATGGATGGGTCGT 59.862 52.381 0.00 0.00 0.00 4.34
2492 2540 2.201732 CGAGTTTATGGATGGGTCGTG 58.798 52.381 0.00 0.00 0.00 4.35
2493 2541 2.561569 GAGTTTATGGATGGGTCGTGG 58.438 52.381 0.00 0.00 0.00 4.94
2494 2542 1.211949 AGTTTATGGATGGGTCGTGGG 59.788 52.381 0.00 0.00 0.00 4.61
2495 2543 0.106918 TTTATGGATGGGTCGTGGGC 60.107 55.000 0.00 0.00 0.00 5.36
2496 2544 2.318519 TTATGGATGGGTCGTGGGCG 62.319 60.000 0.00 0.00 39.92 6.13
2514 2562 2.995574 CCCGTGACGTCCTCCCTT 60.996 66.667 14.12 0.00 0.00 3.95
2515 2563 2.580601 CCCGTGACGTCCTCCCTTT 61.581 63.158 14.12 0.00 0.00 3.11
2516 2564 1.374252 CCGTGACGTCCTCCCTTTG 60.374 63.158 14.12 0.00 0.00 2.77
2517 2565 1.366366 CGTGACGTCCTCCCTTTGT 59.634 57.895 14.12 0.00 0.00 2.83
2518 2566 0.666577 CGTGACGTCCTCCCTTTGTC 60.667 60.000 14.12 0.00 0.00 3.18
2519 2567 0.320508 GTGACGTCCTCCCTTTGTCC 60.321 60.000 14.12 0.00 0.00 4.02
2520 2568 0.471211 TGACGTCCTCCCTTTGTCCT 60.471 55.000 14.12 0.00 0.00 3.85
2521 2569 0.685660 GACGTCCTCCCTTTGTCCTT 59.314 55.000 3.51 0.00 0.00 3.36
2522 2570 0.685660 ACGTCCTCCCTTTGTCCTTC 59.314 55.000 0.00 0.00 0.00 3.46
2523 2571 0.036294 CGTCCTCCCTTTGTCCTTCC 60.036 60.000 0.00 0.00 0.00 3.46
2524 2572 0.328592 GTCCTCCCTTTGTCCTTCCC 59.671 60.000 0.00 0.00 0.00 3.97
2525 2573 0.196118 TCCTCCCTTTGTCCTTCCCT 59.804 55.000 0.00 0.00 0.00 4.20
2526 2574 0.329596 CCTCCCTTTGTCCTTCCCTG 59.670 60.000 0.00 0.00 0.00 4.45
2527 2575 0.329596 CTCCCTTTGTCCTTCCCTGG 59.670 60.000 0.00 0.00 0.00 4.45
2528 2576 1.304464 CCCTTTGTCCTTCCCTGGC 60.304 63.158 0.00 0.00 0.00 4.85
2529 2577 1.304464 CCTTTGTCCTTCCCTGGCC 60.304 63.158 0.00 0.00 0.00 5.36
2530 2578 1.304464 CTTTGTCCTTCCCTGGCCC 60.304 63.158 0.00 0.00 0.00 5.80
2531 2579 3.204467 TTTGTCCTTCCCTGGCCCG 62.204 63.158 0.00 0.00 0.00 6.13
2532 2580 4.974438 TGTCCTTCCCTGGCCCGT 62.974 66.667 0.00 0.00 0.00 5.28
2533 2581 4.097361 GTCCTTCCCTGGCCCGTC 62.097 72.222 0.00 0.00 0.00 4.79
2534 2582 4.332543 TCCTTCCCTGGCCCGTCT 62.333 66.667 0.00 0.00 0.00 4.18
2535 2583 4.101448 CCTTCCCTGGCCCGTCTG 62.101 72.222 0.00 0.00 0.00 3.51
2536 2584 4.785453 CTTCCCTGGCCCGTCTGC 62.785 72.222 0.00 0.00 0.00 4.26
2540 2588 4.335647 CCTGGCCCGTCTGCTTGT 62.336 66.667 0.00 0.00 0.00 3.16
2541 2589 3.052082 CTGGCCCGTCTGCTTGTG 61.052 66.667 0.00 0.00 0.00 3.33
2542 2590 3.535629 CTGGCCCGTCTGCTTGTGA 62.536 63.158 0.00 0.00 0.00 3.58
2543 2591 3.050275 GGCCCGTCTGCTTGTGAC 61.050 66.667 0.00 0.00 0.00 3.67
2544 2592 2.280797 GCCCGTCTGCTTGTGACA 60.281 61.111 0.00 0.00 34.37 3.58
2545 2593 2.607892 GCCCGTCTGCTTGTGACAC 61.608 63.158 0.00 0.00 34.37 3.67
2546 2594 1.227527 CCCGTCTGCTTGTGACACA 60.228 57.895 3.56 3.56 34.37 3.72
2547 2595 0.813610 CCCGTCTGCTTGTGACACAA 60.814 55.000 19.55 19.55 36.54 3.33
2548 2596 0.304705 CCGTCTGCTTGTGACACAAC 59.695 55.000 17.02 13.79 33.96 3.32
2549 2597 0.043053 CGTCTGCTTGTGACACAACG 60.043 55.000 17.02 15.06 33.96 4.10
2550 2598 1.286501 GTCTGCTTGTGACACAACGA 58.713 50.000 17.02 10.72 33.96 3.85
2551 2599 1.004927 GTCTGCTTGTGACACAACGAC 60.005 52.381 17.02 17.44 33.96 4.34
2552 2600 0.043053 CTGCTTGTGACACAACGACG 60.043 55.000 17.02 8.72 33.96 5.12
2553 2601 1.367665 GCTTGTGACACAACGACGC 60.368 57.895 17.02 14.58 33.96 5.19
2554 2602 1.275657 CTTGTGACACAACGACGCC 59.724 57.895 17.02 0.00 33.96 5.68
2555 2603 1.425267 CTTGTGACACAACGACGCCA 61.425 55.000 17.02 0.00 33.96 5.69
2556 2604 0.812014 TTGTGACACAACGACGCCAT 60.812 50.000 17.02 0.00 32.34 4.40
2557 2605 0.812014 TGTGACACAACGACGCCATT 60.812 50.000 5.62 0.00 0.00 3.16
2558 2606 0.110823 GTGACACAACGACGCCATTC 60.111 55.000 0.00 0.00 0.00 2.67
2559 2607 1.225376 TGACACAACGACGCCATTCC 61.225 55.000 0.00 0.00 0.00 3.01
2560 2608 1.908066 GACACAACGACGCCATTCCC 61.908 60.000 0.00 0.00 0.00 3.97
2561 2609 1.671054 CACAACGACGCCATTCCCT 60.671 57.895 0.00 0.00 0.00 4.20
2562 2610 1.375523 ACAACGACGCCATTCCCTC 60.376 57.895 0.00 0.00 0.00 4.30
2563 2611 2.106683 CAACGACGCCATTCCCTCC 61.107 63.158 0.00 0.00 0.00 4.30
2564 2612 3.325201 AACGACGCCATTCCCTCCC 62.325 63.158 0.00 0.00 0.00 4.30
2565 2613 3.781307 CGACGCCATTCCCTCCCA 61.781 66.667 0.00 0.00 0.00 4.37
2566 2614 2.674754 GACGCCATTCCCTCCCAA 59.325 61.111 0.00 0.00 0.00 4.12
2567 2615 1.001393 GACGCCATTCCCTCCCAAA 60.001 57.895 0.00 0.00 0.00 3.28
2568 2616 0.610785 GACGCCATTCCCTCCCAAAA 60.611 55.000 0.00 0.00 0.00 2.44
2569 2617 0.898326 ACGCCATTCCCTCCCAAAAC 60.898 55.000 0.00 0.00 0.00 2.43
2570 2618 0.897863 CGCCATTCCCTCCCAAAACA 60.898 55.000 0.00 0.00 0.00 2.83
2571 2619 0.608130 GCCATTCCCTCCCAAAACAC 59.392 55.000 0.00 0.00 0.00 3.32
2572 2620 1.827245 GCCATTCCCTCCCAAAACACT 60.827 52.381 0.00 0.00 0.00 3.55
2573 2621 2.171003 CCATTCCCTCCCAAAACACTC 58.829 52.381 0.00 0.00 0.00 3.51
2574 2622 2.171003 CATTCCCTCCCAAAACACTCC 58.829 52.381 0.00 0.00 0.00 3.85
2575 2623 1.529744 TTCCCTCCCAAAACACTCCT 58.470 50.000 0.00 0.00 0.00 3.69
2576 2624 0.771127 TCCCTCCCAAAACACTCCTG 59.229 55.000 0.00 0.00 0.00 3.86
2577 2625 0.895559 CCCTCCCAAAACACTCCTGC 60.896 60.000 0.00 0.00 0.00 4.85
2578 2626 0.895559 CCTCCCAAAACACTCCTGCC 60.896 60.000 0.00 0.00 0.00 4.85
2579 2627 0.111253 CTCCCAAAACACTCCTGCCT 59.889 55.000 0.00 0.00 0.00 4.75
2580 2628 0.110486 TCCCAAAACACTCCTGCCTC 59.890 55.000 0.00 0.00 0.00 4.70
2581 2629 0.895559 CCCAAAACACTCCTGCCTCC 60.896 60.000 0.00 0.00 0.00 4.30
2582 2630 0.895559 CCAAAACACTCCTGCCTCCC 60.896 60.000 0.00 0.00 0.00 4.30
2583 2631 1.073199 AAAACACTCCTGCCTCCCG 59.927 57.895 0.00 0.00 0.00 5.14
2584 2632 1.705997 AAAACACTCCTGCCTCCCGT 61.706 55.000 0.00 0.00 0.00 5.28
2585 2633 2.397413 AAACACTCCTGCCTCCCGTG 62.397 60.000 0.00 0.00 0.00 4.94
2586 2634 2.997315 CACTCCTGCCTCCCGTGA 60.997 66.667 0.00 0.00 0.00 4.35
2587 2635 2.039624 ACTCCTGCCTCCCGTGAT 59.960 61.111 0.00 0.00 0.00 3.06
2588 2636 2.362369 ACTCCTGCCTCCCGTGATG 61.362 63.158 0.00 0.00 0.00 3.07
2589 2637 3.083349 TCCTGCCTCCCGTGATGG 61.083 66.667 0.00 0.00 37.55 3.51
2590 2638 4.864334 CCTGCCTCCCGTGATGGC 62.864 72.222 0.00 0.00 46.26 4.40
2591 2639 4.864334 CTGCCTCCCGTGATGGCC 62.864 72.222 0.00 0.00 45.56 5.36
2594 2642 4.530857 CCTCCCGTGATGGCCGAC 62.531 72.222 0.00 0.00 35.87 4.79
2595 2643 4.873129 CTCCCGTGATGGCCGACG 62.873 72.222 13.34 13.34 35.87 5.12
2617 2665 4.524318 CAACCCCGTCGCCGCTAT 62.524 66.667 0.00 0.00 0.00 2.97
2618 2666 2.834505 AACCCCGTCGCCGCTATA 60.835 61.111 0.00 0.00 0.00 1.31
2619 2667 2.853290 AACCCCGTCGCCGCTATAG 61.853 63.158 0.00 0.00 0.00 1.31
2620 2668 3.292936 CCCCGTCGCCGCTATAGT 61.293 66.667 0.84 0.00 0.00 2.12
2621 2669 2.254651 CCCGTCGCCGCTATAGTC 59.745 66.667 0.84 0.00 0.00 2.59
2622 2670 2.254651 CCGTCGCCGCTATAGTCC 59.745 66.667 0.84 0.00 0.00 3.85
2623 2671 2.259439 CCGTCGCCGCTATAGTCCT 61.259 63.158 0.84 0.00 0.00 3.85
2624 2672 1.207085 CGTCGCCGCTATAGTCCTC 59.793 63.158 0.84 0.00 0.00 3.71
2625 2673 1.207085 GTCGCCGCTATAGTCCTCG 59.793 63.158 0.84 1.15 0.00 4.63
2626 2674 1.227764 TCGCCGCTATAGTCCTCGT 60.228 57.895 0.84 0.00 0.00 4.18
2627 2675 1.207085 CGCCGCTATAGTCCTCGTC 59.793 63.158 0.84 0.00 0.00 4.20
2628 2676 1.207085 GCCGCTATAGTCCTCGTCG 59.793 63.158 0.84 0.00 0.00 5.12
2629 2677 1.505477 GCCGCTATAGTCCTCGTCGT 61.505 60.000 0.84 0.00 0.00 4.34
2630 2678 0.235144 CCGCTATAGTCCTCGTCGTG 59.765 60.000 0.84 0.00 0.00 4.35
2631 2679 0.235144 CGCTATAGTCCTCGTCGTGG 59.765 60.000 7.02 7.02 0.00 4.94
2632 2680 0.040246 GCTATAGTCCTCGTCGTGGC 60.040 60.000 8.49 4.36 0.00 5.01
2633 2681 1.595466 CTATAGTCCTCGTCGTGGCT 58.405 55.000 8.49 10.96 0.00 4.75
2634 2682 2.763933 CTATAGTCCTCGTCGTGGCTA 58.236 52.381 8.49 12.56 0.00 3.93
2635 2683 1.307097 ATAGTCCTCGTCGTGGCTAC 58.693 55.000 8.49 3.06 0.00 3.58
2636 2684 0.745845 TAGTCCTCGTCGTGGCTACC 60.746 60.000 8.49 0.00 0.00 3.18
2637 2685 2.753043 TCCTCGTCGTGGCTACCC 60.753 66.667 8.49 0.00 0.00 3.69
2638 2686 4.189188 CCTCGTCGTGGCTACCCG 62.189 72.222 0.00 0.00 0.00 5.28
2639 2687 4.849329 CTCGTCGTGGCTACCCGC 62.849 72.222 0.00 0.00 38.29 6.13
2649 2697 2.670251 CTACCCGCGCACCCAAAA 60.670 61.111 8.75 0.00 0.00 2.44
2650 2698 2.203308 TACCCGCGCACCCAAAAA 60.203 55.556 8.75 0.00 0.00 1.94
2651 2699 2.195123 CTACCCGCGCACCCAAAAAG 62.195 60.000 8.75 0.00 0.00 2.27
2652 2700 2.962142 TACCCGCGCACCCAAAAAGT 62.962 55.000 8.75 0.00 0.00 2.66
2667 2715 9.703892 CACCCAAAAAGTGATTACATTGAATAA 57.296 29.630 0.00 0.00 37.42 1.40
2711 2759 9.512435 GGAGAACATTGTATTGAAGATCAAATG 57.488 33.333 0.00 0.00 40.12 2.32
2730 2780 8.138928 TCAAATGGAGAGAAGAAGTCATCTAA 57.861 34.615 0.00 0.00 37.42 2.10
2737 2787 9.398538 GGAGAGAAGAAGTCATCTAACTACTAA 57.601 37.037 0.00 0.00 37.42 2.24
2748 2798 6.713903 TCATCTAACTACTAACTATGGACCCG 59.286 42.308 0.00 0.00 0.00 5.28
2806 2856 2.162408 GGCAGCAAGGTTGATGTAGAAC 59.838 50.000 9.53 0.00 45.71 3.01
2812 2862 3.207044 AGGTTGATGTAGAACCCCTCT 57.793 47.619 0.00 0.00 43.52 3.69
2818 2868 4.104086 TGATGTAGAACCCCTCTGTGATT 58.896 43.478 0.00 0.00 35.41 2.57
2829 2879 2.158696 CCTCTGTGATTGATTCCCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
2830 2880 2.776536 CTCTGTGATTGATTCCCCCTCT 59.223 50.000 0.00 0.00 0.00 3.69
2860 2910 1.697297 GGAAAAGGCCCCCAGATGA 59.303 57.895 0.00 0.00 0.00 2.92
2867 2917 0.473501 GGCCCCCAGATGAGATCTCT 60.474 60.000 22.95 9.13 37.58 3.10
2868 2918 0.975887 GCCCCCAGATGAGATCTCTC 59.024 60.000 22.95 16.70 43.15 3.20
2869 2919 1.255882 CCCCCAGATGAGATCTCTCG 58.744 60.000 22.95 12.95 45.72 4.04
2879 2929 5.528690 AGATGAGATCTCTCGAGAACAGAAG 59.471 44.000 22.95 3.57 45.72 2.85
2880 2930 4.584874 TGAGATCTCTCGAGAACAGAAGT 58.415 43.478 22.95 2.31 45.72 3.01
2884 2934 4.920640 TCTCTCGAGAACAGAAGTTTGT 57.079 40.909 17.36 0.00 38.30 2.83
2887 2937 2.210116 TCGAGAACAGAAGTTTGTGGC 58.790 47.619 0.00 0.00 38.30 5.01
2889 2939 2.210116 GAGAACAGAAGTTTGTGGCGA 58.790 47.619 0.00 0.00 38.30 5.54
2892 2942 1.157870 ACAGAAGTTTGTGGCGACGG 61.158 55.000 0.00 0.00 0.00 4.79
2897 2947 0.661020 AGTTTGTGGCGACGGAAAAG 59.339 50.000 0.00 0.00 0.00 2.27
2899 2949 1.448922 TTTGTGGCGACGGAAAAGGG 61.449 55.000 0.00 0.00 0.00 3.95
2905 2955 1.167781 GCGACGGAAAAGGGGTTTCA 61.168 55.000 0.00 0.00 46.47 2.69
2909 2959 1.776063 ACGGAAAAGGGGTTTCAGGTA 59.224 47.619 4.44 0.00 46.47 3.08
2928 2978 2.403252 AGCTCTATGTTGGTTTCCCG 57.597 50.000 0.00 0.00 0.00 5.14
2950 3000 8.095169 TCCCGATTTTAGAGAATTTATAGAGGC 58.905 37.037 0.00 0.00 0.00 4.70
2951 3001 7.878127 CCCGATTTTAGAGAATTTATAGAGGCA 59.122 37.037 0.00 0.00 0.00 4.75
2971 3021 3.334691 CAGAATTAGGTCAAACGGAGCA 58.665 45.455 0.00 0.00 46.51 4.26
2973 3023 4.215399 CAGAATTAGGTCAAACGGAGCAAA 59.785 41.667 0.00 0.00 46.51 3.68
2976 3026 0.182775 AGGTCAAACGGAGCAAAGGT 59.817 50.000 0.00 0.00 46.51 3.50
2985 3035 2.203684 AGCAAAGGTGGGCCCAAG 60.204 61.111 30.64 15.36 34.66 3.61
2986 3036 3.313524 GCAAAGGTGGGCCCAAGG 61.314 66.667 30.64 15.40 34.66 3.61
3111 3162 3.330720 CCAGGTTCGGGCCCTCTT 61.331 66.667 22.43 3.59 0.00 2.85
3153 3204 6.524734 ACGTCCTGCTTGATTGATATTGATA 58.475 36.000 0.00 0.00 0.00 2.15
3154 3205 7.164122 ACGTCCTGCTTGATTGATATTGATAT 58.836 34.615 0.00 0.00 0.00 1.63
3156 3207 7.961283 CGTCCTGCTTGATTGATATTGATATTG 59.039 37.037 0.00 0.00 0.00 1.90
3160 3211 8.694581 TGCTTGATTGATATTGATATTGTGGA 57.305 30.769 0.00 0.00 0.00 4.02
3162 3213 9.569167 GCTTGATTGATATTGATATTGTGGATG 57.431 33.333 0.00 0.00 0.00 3.51
3233 3284 6.935240 AGCTAGCCTATGGTATGATTGTTA 57.065 37.500 12.13 0.00 0.00 2.41
3235 3286 7.334090 AGCTAGCCTATGGTATGATTGTTATG 58.666 38.462 12.13 0.00 0.00 1.90
3236 3287 6.540189 GCTAGCCTATGGTATGATTGTTATGG 59.460 42.308 2.29 0.00 0.00 2.74
3238 3289 6.852404 AGCCTATGGTATGATTGTTATGGTT 58.148 36.000 0.00 0.00 0.00 3.67
3239 3290 6.716628 AGCCTATGGTATGATTGTTATGGTTG 59.283 38.462 0.00 0.00 0.00 3.77
3240 3291 6.490040 GCCTATGGTATGATTGTTATGGTTGT 59.510 38.462 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 223 9.008289 CAAAAACAAATTGCCAAATGTTTCTAC 57.992 29.630 18.89 0.00 43.16 2.59
220 224 7.699812 GCAAAAACAAATTGCCAAATGTTTCTA 59.300 29.630 18.89 0.00 45.73 2.10
222 226 6.694293 GCAAAAACAAATTGCCAAATGTTTC 58.306 32.000 18.89 8.44 45.73 2.78
223 227 6.644191 GCAAAAACAAATTGCCAAATGTTT 57.356 29.167 15.06 15.06 45.73 2.83
288 293 6.018751 GCATTCTGGGAAAGTTTCAAGAAAAC 60.019 38.462 24.96 19.06 46.36 2.43
304 309 9.467258 CAATAAAACAATACTATGCATTCTGGG 57.533 33.333 3.54 0.00 0.00 4.45
323 328 8.710239 GGGGGAAAATTCTATAAGGCAATAAAA 58.290 33.333 0.00 0.00 0.00 1.52
327 332 5.787327 TGGGGGAAAATTCTATAAGGCAAT 58.213 37.500 0.00 0.00 0.00 3.56
330 335 6.553953 TTTTGGGGGAAAATTCTATAAGGC 57.446 37.500 0.00 0.00 0.00 4.35
351 356 8.987890 CCAAACATCCGAAGTTTCAATATTTTT 58.012 29.630 0.00 0.00 37.10 1.94
352 357 8.364142 TCCAAACATCCGAAGTTTCAATATTTT 58.636 29.630 0.00 0.00 37.10 1.82
353 358 7.891561 TCCAAACATCCGAAGTTTCAATATTT 58.108 30.769 0.00 0.00 37.10 1.40
354 359 7.461182 TCCAAACATCCGAAGTTTCAATATT 57.539 32.000 0.00 0.00 37.10 1.28
355 360 7.461182 TTCCAAACATCCGAAGTTTCAATAT 57.539 32.000 0.00 0.00 37.10 1.28
356 361 6.885952 TTCCAAACATCCGAAGTTTCAATA 57.114 33.333 0.00 0.00 37.10 1.90
357 362 5.782893 TTCCAAACATCCGAAGTTTCAAT 57.217 34.783 0.00 0.00 37.10 2.57
390 395 6.642131 CGCCAAATCTGATTTCTGAAGAAAAA 59.358 34.615 12.50 1.43 45.81 1.94
391 396 6.151691 CGCCAAATCTGATTTCTGAAGAAAA 58.848 36.000 12.50 0.00 45.81 2.29
392 397 5.335897 CCGCCAAATCTGATTTCTGAAGAAA 60.336 40.000 12.50 7.89 46.60 2.52
395 400 3.441572 ACCGCCAAATCTGATTTCTGAAG 59.558 43.478 12.50 2.09 0.00 3.02
397 402 3.071874 ACCGCCAAATCTGATTTCTGA 57.928 42.857 12.50 0.00 0.00 3.27
398 403 4.963276 TTACCGCCAAATCTGATTTCTG 57.037 40.909 12.50 8.38 0.00 3.02
423 431 9.877178 TTCACAACCTTTTGCTTAAAATAAAGA 57.123 25.926 0.00 0.00 36.00 2.52
441 449 4.937201 ATTCTGGGAAAGTTTCACAACC 57.063 40.909 20.62 11.11 43.64 3.77
442 450 5.660460 ACAATTCTGGGAAAGTTTCACAAC 58.340 37.500 20.62 6.90 43.64 3.32
443 451 5.930837 ACAATTCTGGGAAAGTTTCACAA 57.069 34.783 20.62 8.26 43.64 3.33
445 453 7.039313 ACTTACAATTCTGGGAAAGTTTCAC 57.961 36.000 17.16 14.31 0.00 3.18
499 507 8.634335 TGTGAACATTCAGAATTCCAGATTTA 57.366 30.769 0.65 0.00 37.98 1.40
503 514 6.957920 TTTGTGAACATTCAGAATTCCAGA 57.042 33.333 0.65 0.00 39.72 3.86
531 542 6.422776 TTTTGCTTTTATTTCGTGCCAAAA 57.577 29.167 0.00 0.00 0.00 2.44
532 543 5.007136 CCTTTTGCTTTTATTTCGTGCCAAA 59.993 36.000 0.00 0.00 0.00 3.28
539 558 6.863126 ACTCATGTCCTTTTGCTTTTATTTCG 59.137 34.615 0.00 0.00 0.00 3.46
550 569 5.284079 CAACCTCAAACTCATGTCCTTTTG 58.716 41.667 0.00 0.00 0.00 2.44
551 570 4.342092 CCAACCTCAAACTCATGTCCTTTT 59.658 41.667 0.00 0.00 0.00 2.27
552 571 3.891366 CCAACCTCAAACTCATGTCCTTT 59.109 43.478 0.00 0.00 0.00 3.11
553 572 3.138283 TCCAACCTCAAACTCATGTCCTT 59.862 43.478 0.00 0.00 0.00 3.36
554 573 2.711009 TCCAACCTCAAACTCATGTCCT 59.289 45.455 0.00 0.00 0.00 3.85
555 574 3.140325 TCCAACCTCAAACTCATGTCC 57.860 47.619 0.00 0.00 0.00 4.02
556 575 7.253422 CAATATTCCAACCTCAAACTCATGTC 58.747 38.462 0.00 0.00 0.00 3.06
557 576 6.350445 GCAATATTCCAACCTCAAACTCATGT 60.350 38.462 0.00 0.00 0.00 3.21
563 582 7.148423 GGAAATTGCAATATTCCAACCTCAAAC 60.148 37.037 29.16 12.13 41.80 2.93
589 620 2.671396 GAGCACGTTACCCACATTAGTG 59.329 50.000 0.00 0.00 45.47 2.74
650 681 0.233074 CGCTTGCGGCATACAGTATG 59.767 55.000 15.39 15.39 41.63 2.39
685 716 1.302431 TGGGCGCGCTAATATGCAT 60.302 52.632 32.29 3.79 0.00 3.96
686 717 2.110006 TGGGCGCGCTAATATGCA 59.890 55.556 32.29 0.00 0.00 3.96
687 718 1.577328 ATGTGGGCGCGCTAATATGC 61.577 55.000 32.29 12.21 0.00 3.14
688 719 0.166597 CATGTGGGCGCGCTAATATG 59.833 55.000 32.29 25.59 0.00 1.78
691 722 2.901840 CCATGTGGGCGCGCTAAT 60.902 61.111 32.29 16.06 0.00 1.73
692 723 4.402528 ACCATGTGGGCGCGCTAA 62.403 61.111 32.29 16.93 42.05 3.09
693 724 4.830765 GACCATGTGGGCGCGCTA 62.831 66.667 32.29 17.92 42.05 4.26
712 753 2.432456 TGCGTGATCCAGACGTGC 60.432 61.111 0.00 0.00 39.08 5.34
740 781 0.605319 TGGAAGATTGGTGGTCGTGC 60.605 55.000 0.00 0.00 0.00 5.34
802 844 1.746615 CTGTGGGAGGTTGCCATCG 60.747 63.158 0.00 0.00 40.94 3.84
968 1010 4.284490 TCTTCACAAGCAGTAGACTGGAAT 59.716 41.667 11.51 0.00 43.94 3.01
969 1011 3.641436 TCTTCACAAGCAGTAGACTGGAA 59.359 43.478 11.51 5.27 43.94 3.53
970 1012 3.230976 TCTTCACAAGCAGTAGACTGGA 58.769 45.455 11.51 0.00 43.94 3.86
976 1024 2.758736 AGGCTCTTCACAAGCAGTAG 57.241 50.000 0.00 0.00 41.66 2.57
1084 1132 1.684049 CGAGGAAGAGGAGGGCAGT 60.684 63.158 0.00 0.00 0.00 4.40
1166 1214 4.823419 CGTGGGTATTGGCGCCGA 62.823 66.667 21.20 21.20 0.00 5.54
1245 1293 3.931247 TTGGTGTAGTGCGGCCGT 61.931 61.111 28.70 9.89 0.00 5.68
1323 1371 0.329596 ACCTCCACTGCAGGAAATCC 59.670 55.000 19.93 0.00 37.20 3.01
1412 1460 0.250513 GAACAGGATCGACTTGCCCT 59.749 55.000 0.00 0.00 0.00 5.19
1656 1704 4.316823 AGGTGGAGGTCGCTGGGA 62.317 66.667 0.00 0.00 0.00 4.37
1815 1863 4.609018 AGCGCAGTCACGTTGCCT 62.609 61.111 11.47 1.35 38.31 4.75
1891 1939 4.367023 CCCGCTGAACCCGTCGAA 62.367 66.667 0.00 0.00 0.00 3.71
2064 2112 3.354472 TTCCTCCTCCGCCGCTCTA 62.354 63.158 0.00 0.00 0.00 2.43
2082 2130 3.681835 ACGCCGTTCTTCCTCGCT 61.682 61.111 0.00 0.00 0.00 4.93
2154 2202 2.114670 GTGTCCGTACCGATCGGGA 61.115 63.158 35.87 28.16 46.82 5.14
2239 2287 0.106708 AGAAGCAGCTCGTTCCACAA 59.893 50.000 0.00 0.00 0.00 3.33
2256 2304 0.911769 AACCGGCCATGATCTGAAGA 59.088 50.000 0.00 0.00 0.00 2.87
2287 2335 4.460948 AGGCGAAAATTCATGCAAGAAT 57.539 36.364 11.27 11.27 39.81 2.40
2291 2339 2.159254 GGCTAGGCGAAAATTCATGCAA 60.159 45.455 0.00 0.00 0.00 4.08
2292 2340 1.405105 GGCTAGGCGAAAATTCATGCA 59.595 47.619 0.00 0.00 0.00 3.96
2293 2341 1.678101 AGGCTAGGCGAAAATTCATGC 59.322 47.619 11.10 0.00 0.00 4.06
2294 2342 2.945008 TGAGGCTAGGCGAAAATTCATG 59.055 45.455 11.10 0.00 0.00 3.07
2295 2343 2.945668 GTGAGGCTAGGCGAAAATTCAT 59.054 45.455 11.10 0.00 0.00 2.57
2296 2344 2.290008 TGTGAGGCTAGGCGAAAATTCA 60.290 45.455 11.10 5.11 0.00 2.57
2297 2345 2.356135 TGTGAGGCTAGGCGAAAATTC 58.644 47.619 11.10 2.30 0.00 2.17
2298 2346 2.489938 TGTGAGGCTAGGCGAAAATT 57.510 45.000 11.10 0.00 0.00 1.82
2299 2347 2.292267 CATGTGAGGCTAGGCGAAAAT 58.708 47.619 11.10 0.87 0.00 1.82
2300 2348 1.003118 ACATGTGAGGCTAGGCGAAAA 59.997 47.619 11.10 0.00 0.00 2.29
2301 2349 0.613260 ACATGTGAGGCTAGGCGAAA 59.387 50.000 11.10 0.00 0.00 3.46
2302 2350 1.480789 TACATGTGAGGCTAGGCGAA 58.519 50.000 9.11 0.00 0.00 4.70
2303 2351 1.480789 TTACATGTGAGGCTAGGCGA 58.519 50.000 9.11 0.00 0.00 5.54
2304 2352 2.309528 TTTACATGTGAGGCTAGGCG 57.690 50.000 9.11 0.00 0.00 5.52
2305 2353 2.945668 CCTTTTACATGTGAGGCTAGGC 59.054 50.000 9.11 8.55 0.00 3.93
2306 2354 4.222124 ACCTTTTACATGTGAGGCTAGG 57.778 45.455 19.00 13.79 32.42 3.02
2307 2355 5.491982 AGAACCTTTTACATGTGAGGCTAG 58.508 41.667 19.00 5.40 32.42 3.42
2308 2356 5.499004 AGAACCTTTTACATGTGAGGCTA 57.501 39.130 19.00 0.00 32.42 3.93
2309 2357 4.373156 AGAACCTTTTACATGTGAGGCT 57.627 40.909 19.00 10.95 32.42 4.58
2310 2358 4.518970 TGAAGAACCTTTTACATGTGAGGC 59.481 41.667 19.00 8.55 32.42 4.70
2311 2359 6.633500 TTGAAGAACCTTTTACATGTGAGG 57.367 37.500 9.11 14.85 35.39 3.86
2312 2360 9.533253 AAAATTGAAGAACCTTTTACATGTGAG 57.467 29.630 9.11 3.73 0.00 3.51
2313 2361 9.883142 AAAAATTGAAGAACCTTTTACATGTGA 57.117 25.926 9.11 0.00 0.00 3.58
2320 2368 9.816354 CCAAGAGAAAAATTGAAGAACCTTTTA 57.184 29.630 0.00 0.00 0.00 1.52
2321 2369 7.280876 GCCAAGAGAAAAATTGAAGAACCTTTT 59.719 33.333 0.00 0.00 0.00 2.27
2322 2370 6.763135 GCCAAGAGAAAAATTGAAGAACCTTT 59.237 34.615 0.00 0.00 0.00 3.11
2323 2371 6.098838 AGCCAAGAGAAAAATTGAAGAACCTT 59.901 34.615 0.00 0.00 0.00 3.50
2324 2372 5.600069 AGCCAAGAGAAAAATTGAAGAACCT 59.400 36.000 0.00 0.00 0.00 3.50
2325 2373 5.693555 CAGCCAAGAGAAAAATTGAAGAACC 59.306 40.000 0.00 0.00 0.00 3.62
2326 2374 6.199719 CACAGCCAAGAGAAAAATTGAAGAAC 59.800 38.462 0.00 0.00 0.00 3.01
2327 2375 6.275335 CACAGCCAAGAGAAAAATTGAAGAA 58.725 36.000 0.00 0.00 0.00 2.52
2328 2376 5.737063 GCACAGCCAAGAGAAAAATTGAAGA 60.737 40.000 0.00 0.00 0.00 2.87
2329 2377 4.446719 GCACAGCCAAGAGAAAAATTGAAG 59.553 41.667 0.00 0.00 0.00 3.02
2330 2378 4.099881 AGCACAGCCAAGAGAAAAATTGAA 59.900 37.500 0.00 0.00 0.00 2.69
2331 2379 3.638160 AGCACAGCCAAGAGAAAAATTGA 59.362 39.130 0.00 0.00 0.00 2.57
2332 2380 3.986277 AGCACAGCCAAGAGAAAAATTG 58.014 40.909 0.00 0.00 0.00 2.32
2333 2381 5.477984 TCATAGCACAGCCAAGAGAAAAATT 59.522 36.000 0.00 0.00 0.00 1.82
2334 2382 5.012239 TCATAGCACAGCCAAGAGAAAAAT 58.988 37.500 0.00 0.00 0.00 1.82
2335 2383 4.397420 TCATAGCACAGCCAAGAGAAAAA 58.603 39.130 0.00 0.00 0.00 1.94
2336 2384 4.005650 CTCATAGCACAGCCAAGAGAAAA 58.994 43.478 0.00 0.00 0.00 2.29
2337 2385 3.603532 CTCATAGCACAGCCAAGAGAAA 58.396 45.455 0.00 0.00 0.00 2.52
2338 2386 2.093288 CCTCATAGCACAGCCAAGAGAA 60.093 50.000 0.00 0.00 0.00 2.87
2339 2387 1.483827 CCTCATAGCACAGCCAAGAGA 59.516 52.381 0.00 0.00 0.00 3.10
2340 2388 1.209019 ACCTCATAGCACAGCCAAGAG 59.791 52.381 0.00 0.00 0.00 2.85
2341 2389 1.208052 GACCTCATAGCACAGCCAAGA 59.792 52.381 0.00 0.00 0.00 3.02
2342 2390 1.065926 TGACCTCATAGCACAGCCAAG 60.066 52.381 0.00 0.00 0.00 3.61
2343 2391 0.983467 TGACCTCATAGCACAGCCAA 59.017 50.000 0.00 0.00 0.00 4.52
2344 2392 0.983467 TTGACCTCATAGCACAGCCA 59.017 50.000 0.00 0.00 0.00 4.75
2345 2393 1.065854 AGTTGACCTCATAGCACAGCC 60.066 52.381 0.00 0.00 0.00 4.85
2346 2394 2.275318 GAGTTGACCTCATAGCACAGC 58.725 52.381 0.00 0.00 40.17 4.40
2347 2395 2.234661 TGGAGTTGACCTCATAGCACAG 59.765 50.000 0.00 0.00 42.40 3.66
2348 2396 2.234661 CTGGAGTTGACCTCATAGCACA 59.765 50.000 0.00 0.00 42.40 4.57
2349 2397 2.898705 CTGGAGTTGACCTCATAGCAC 58.101 52.381 0.00 0.00 42.40 4.40
2350 2398 1.208052 GCTGGAGTTGACCTCATAGCA 59.792 52.381 10.84 0.00 44.71 3.49
2351 2399 1.804372 CGCTGGAGTTGACCTCATAGC 60.804 57.143 0.00 0.00 43.23 2.97
2352 2400 1.202463 CCGCTGGAGTTGACCTCATAG 60.202 57.143 0.00 0.00 42.40 2.23
2353 2401 0.824109 CCGCTGGAGTTGACCTCATA 59.176 55.000 0.00 0.00 42.40 2.15
2354 2402 0.904865 TCCGCTGGAGTTGACCTCAT 60.905 55.000 0.00 0.00 42.40 2.90
2355 2403 0.904865 ATCCGCTGGAGTTGACCTCA 60.905 55.000 3.76 0.00 42.40 3.86
2356 2404 1.067821 CTATCCGCTGGAGTTGACCTC 59.932 57.143 3.76 0.00 39.67 3.85
2357 2405 1.115467 CTATCCGCTGGAGTTGACCT 58.885 55.000 3.76 0.00 34.05 3.85
2358 2406 1.112113 TCTATCCGCTGGAGTTGACC 58.888 55.000 3.76 0.00 34.05 4.02
2359 2407 1.534175 CGTCTATCCGCTGGAGTTGAC 60.534 57.143 3.76 9.20 34.05 3.18
2360 2408 0.738975 CGTCTATCCGCTGGAGTTGA 59.261 55.000 3.76 0.01 34.05 3.18
2361 2409 3.258225 CGTCTATCCGCTGGAGTTG 57.742 57.895 3.76 0.00 34.05 3.16
2370 2418 1.784856 CGTACCAAATGCGTCTATCCG 59.215 52.381 0.00 0.00 0.00 4.18
2378 2426 0.869068 TGTGGAACGTACCAAATGCG 59.131 50.000 0.00 0.00 42.39 4.73
2379 2427 2.747446 AGATGTGGAACGTACCAAATGC 59.253 45.455 0.00 0.00 42.39 3.56
2380 2428 6.458206 CCAATAGATGTGGAACGTACCAAATG 60.458 42.308 0.00 0.00 42.39 2.32
2381 2429 5.588648 CCAATAGATGTGGAACGTACCAAAT 59.411 40.000 0.00 0.00 42.39 2.32
2382 2430 4.938832 CCAATAGATGTGGAACGTACCAAA 59.061 41.667 0.00 0.00 42.39 3.28
2383 2431 4.020039 ACCAATAGATGTGGAACGTACCAA 60.020 41.667 0.00 0.00 42.39 3.67
2384 2432 3.516300 ACCAATAGATGTGGAACGTACCA 59.484 43.478 0.00 0.00 42.39 3.25
2385 2433 4.117685 GACCAATAGATGTGGAACGTACC 58.882 47.826 0.00 0.00 42.39 3.34
2386 2434 4.117685 GGACCAATAGATGTGGAACGTAC 58.882 47.826 0.00 0.00 42.39 3.67
2387 2435 3.181484 CGGACCAATAGATGTGGAACGTA 60.181 47.826 0.00 0.00 42.39 3.57
2388 2436 2.418197 CGGACCAATAGATGTGGAACGT 60.418 50.000 0.00 0.00 42.39 3.99
2389 2437 2.201732 CGGACCAATAGATGTGGAACG 58.798 52.381 0.00 0.00 42.39 3.95
2390 2438 1.940613 GCGGACCAATAGATGTGGAAC 59.059 52.381 0.00 0.00 39.62 3.62
2391 2439 1.557371 TGCGGACCAATAGATGTGGAA 59.443 47.619 0.00 0.00 39.62 3.53
2392 2440 1.199615 TGCGGACCAATAGATGTGGA 58.800 50.000 0.00 0.00 39.62 4.02
2393 2441 1.875514 CATGCGGACCAATAGATGTGG 59.124 52.381 0.00 0.00 42.28 4.17
2394 2442 1.875514 CCATGCGGACCAATAGATGTG 59.124 52.381 0.00 0.00 0.00 3.21
2395 2443 1.768275 TCCATGCGGACCAATAGATGT 59.232 47.619 0.00 0.00 35.91 3.06
2396 2444 2.549064 TCCATGCGGACCAATAGATG 57.451 50.000 0.00 0.00 35.91 2.90
2406 2454 1.620323 CATCTATCTGGTCCATGCGGA 59.380 52.381 0.00 0.00 39.79 5.54
2407 2455 1.345741 ACATCTATCTGGTCCATGCGG 59.654 52.381 0.00 0.00 0.00 5.69
2408 2456 2.827800 ACATCTATCTGGTCCATGCG 57.172 50.000 0.00 0.00 0.00 4.73
2409 2457 3.062763 CGAACATCTATCTGGTCCATGC 58.937 50.000 0.00 0.00 28.47 4.06
2410 2458 4.327982 ACGAACATCTATCTGGTCCATG 57.672 45.455 0.00 0.00 28.47 3.66
2411 2459 5.359194 AAACGAACATCTATCTGGTCCAT 57.641 39.130 0.00 0.00 28.47 3.41
2412 2460 4.819105 AAACGAACATCTATCTGGTCCA 57.181 40.909 0.00 0.00 28.47 4.02
2434 2482 4.462133 TGAAATAGGTCACGGTGGAAAAA 58.538 39.130 8.50 0.00 0.00 1.94
2435 2483 4.069304 CTGAAATAGGTCACGGTGGAAAA 58.931 43.478 8.50 0.00 0.00 2.29
2436 2484 3.558321 CCTGAAATAGGTCACGGTGGAAA 60.558 47.826 8.50 0.00 42.00 3.13
2437 2485 2.027561 CCTGAAATAGGTCACGGTGGAA 60.028 50.000 8.50 0.00 42.00 3.53
2438 2486 1.553248 CCTGAAATAGGTCACGGTGGA 59.447 52.381 8.50 0.00 42.00 4.02
2439 2487 2.024176 CCTGAAATAGGTCACGGTGG 57.976 55.000 8.50 0.00 42.00 4.61
2447 2495 3.519107 CCAAATTTGGGCCTGAAATAGGT 59.481 43.478 26.87 0.00 43.28 3.08
2448 2496 4.141233 CCAAATTTGGGCCTGAAATAGG 57.859 45.455 26.87 9.64 44.70 2.57
2461 2509 3.194542 TCCATAAACTCGGCCCAAATTTG 59.805 43.478 11.40 11.40 0.00 2.32
2462 2510 3.436243 TCCATAAACTCGGCCCAAATTT 58.564 40.909 0.00 0.00 0.00 1.82
2463 2511 3.094484 TCCATAAACTCGGCCCAAATT 57.906 42.857 0.00 0.00 0.00 1.82
2464 2512 2.818751 TCCATAAACTCGGCCCAAAT 57.181 45.000 0.00 0.00 0.00 2.32
2465 2513 2.374184 CATCCATAAACTCGGCCCAAA 58.626 47.619 0.00 0.00 0.00 3.28
2466 2514 1.409521 CCATCCATAAACTCGGCCCAA 60.410 52.381 0.00 0.00 0.00 4.12
2467 2515 0.182537 CCATCCATAAACTCGGCCCA 59.817 55.000 0.00 0.00 0.00 5.36
2468 2516 0.537371 CCCATCCATAAACTCGGCCC 60.537 60.000 0.00 0.00 0.00 5.80
2469 2517 0.182775 ACCCATCCATAAACTCGGCC 59.817 55.000 0.00 0.00 0.00 6.13
2470 2518 1.594331 GACCCATCCATAAACTCGGC 58.406 55.000 0.00 0.00 0.00 5.54
2471 2519 1.138266 ACGACCCATCCATAAACTCGG 59.862 52.381 0.00 0.00 0.00 4.63
2472 2520 2.201732 CACGACCCATCCATAAACTCG 58.798 52.381 0.00 0.00 0.00 4.18
2473 2521 2.561569 CCACGACCCATCCATAAACTC 58.438 52.381 0.00 0.00 0.00 3.01
2474 2522 1.211949 CCCACGACCCATCCATAAACT 59.788 52.381 0.00 0.00 0.00 2.66
2475 2523 1.675552 CCCACGACCCATCCATAAAC 58.324 55.000 0.00 0.00 0.00 2.01
2476 2524 0.106918 GCCCACGACCCATCCATAAA 60.107 55.000 0.00 0.00 0.00 1.40
2477 2525 1.529796 GCCCACGACCCATCCATAA 59.470 57.895 0.00 0.00 0.00 1.90
2478 2526 2.802724 CGCCCACGACCCATCCATA 61.803 63.158 0.00 0.00 43.93 2.74
2479 2527 4.175337 CGCCCACGACCCATCCAT 62.175 66.667 0.00 0.00 43.93 3.41
2497 2545 2.580601 AAAGGGAGGACGTCACGGG 61.581 63.158 18.91 0.00 31.54 5.28
2498 2546 1.374252 CAAAGGGAGGACGTCACGG 60.374 63.158 18.91 0.00 31.54 4.94
2499 2547 0.666577 GACAAAGGGAGGACGTCACG 60.667 60.000 18.91 0.00 31.54 4.35
2500 2548 0.320508 GGACAAAGGGAGGACGTCAC 60.321 60.000 18.91 10.53 0.00 3.67
2501 2549 0.471211 AGGACAAAGGGAGGACGTCA 60.471 55.000 18.91 0.00 0.00 4.35
2502 2550 0.685660 AAGGACAAAGGGAGGACGTC 59.314 55.000 7.13 7.13 0.00 4.34
2503 2551 0.685660 GAAGGACAAAGGGAGGACGT 59.314 55.000 0.00 0.00 0.00 4.34
2504 2552 0.036294 GGAAGGACAAAGGGAGGACG 60.036 60.000 0.00 0.00 0.00 4.79
2505 2553 0.328592 GGGAAGGACAAAGGGAGGAC 59.671 60.000 0.00 0.00 0.00 3.85
2506 2554 0.196118 AGGGAAGGACAAAGGGAGGA 59.804 55.000 0.00 0.00 0.00 3.71
2507 2555 0.329596 CAGGGAAGGACAAAGGGAGG 59.670 60.000 0.00 0.00 0.00 4.30
2508 2556 0.329596 CCAGGGAAGGACAAAGGGAG 59.670 60.000 0.00 0.00 0.00 4.30
2509 2557 1.789576 GCCAGGGAAGGACAAAGGGA 61.790 60.000 0.00 0.00 0.00 4.20
2510 2558 1.304464 GCCAGGGAAGGACAAAGGG 60.304 63.158 0.00 0.00 0.00 3.95
2511 2559 1.304464 GGCCAGGGAAGGACAAAGG 60.304 63.158 0.00 0.00 36.38 3.11
2512 2560 1.304464 GGGCCAGGGAAGGACAAAG 60.304 63.158 4.39 0.00 38.98 2.77
2513 2561 2.851045 GGGCCAGGGAAGGACAAA 59.149 61.111 4.39 0.00 38.98 2.83
2514 2562 3.646715 CGGGCCAGGGAAGGACAA 61.647 66.667 4.39 0.00 38.98 3.18
2515 2563 4.974438 ACGGGCCAGGGAAGGACA 62.974 66.667 8.08 0.00 38.98 4.02
2516 2564 4.097361 GACGGGCCAGGGAAGGAC 62.097 72.222 8.08 0.00 35.24 3.85
2517 2565 4.332543 AGACGGGCCAGGGAAGGA 62.333 66.667 8.08 0.00 0.00 3.36
2518 2566 4.101448 CAGACGGGCCAGGGAAGG 62.101 72.222 8.08 0.00 0.00 3.46
2519 2567 4.785453 GCAGACGGGCCAGGGAAG 62.785 72.222 8.08 0.00 0.00 3.46
2523 2571 4.335647 ACAAGCAGACGGGCCAGG 62.336 66.667 8.08 0.00 0.00 4.45
2524 2572 3.052082 CACAAGCAGACGGGCCAG 61.052 66.667 4.39 1.85 0.00 4.85
2525 2573 3.555324 TCACAAGCAGACGGGCCA 61.555 61.111 4.39 0.00 0.00 5.36
2526 2574 3.050275 GTCACAAGCAGACGGGCC 61.050 66.667 0.00 0.00 0.00 5.80
2527 2575 2.280797 TGTCACAAGCAGACGGGC 60.281 61.111 0.00 0.00 38.83 6.13
2528 2576 0.813610 TTGTGTCACAAGCAGACGGG 60.814 55.000 14.48 0.00 38.83 5.28
2529 2577 0.304705 GTTGTGTCACAAGCAGACGG 59.695 55.000 18.70 0.00 39.00 4.79
2530 2578 0.043053 CGTTGTGTCACAAGCAGACG 60.043 55.000 18.70 14.69 39.00 4.18
2531 2579 1.004927 GTCGTTGTGTCACAAGCAGAC 60.005 52.381 18.70 20.94 39.00 3.51
2532 2580 1.286501 GTCGTTGTGTCACAAGCAGA 58.713 50.000 18.70 14.73 39.00 4.26
2533 2581 0.043053 CGTCGTTGTGTCACAAGCAG 60.043 55.000 18.70 12.81 39.00 4.24
2534 2582 2.002899 CGTCGTTGTGTCACAAGCA 58.997 52.632 18.70 5.59 39.00 3.91
2535 2583 1.367665 GCGTCGTTGTGTCACAAGC 60.368 57.895 18.70 14.22 39.00 4.01
2536 2584 1.275657 GGCGTCGTTGTGTCACAAG 59.724 57.895 18.70 12.51 39.00 3.16
2537 2585 0.812014 ATGGCGTCGTTGTGTCACAA 60.812 50.000 14.48 14.48 35.42 3.33
2538 2586 0.812014 AATGGCGTCGTTGTGTCACA 60.812 50.000 0.18 0.18 0.00 3.58
2539 2587 0.110823 GAATGGCGTCGTTGTGTCAC 60.111 55.000 0.00 0.00 0.00 3.67
2540 2588 1.225376 GGAATGGCGTCGTTGTGTCA 61.225 55.000 0.00 0.00 0.00 3.58
2541 2589 1.495951 GGAATGGCGTCGTTGTGTC 59.504 57.895 0.00 0.00 0.00 3.67
2542 2590 1.964373 GGGAATGGCGTCGTTGTGT 60.964 57.895 0.00 0.00 0.00 3.72
2543 2591 1.635663 GAGGGAATGGCGTCGTTGTG 61.636 60.000 0.00 0.00 0.00 3.33
2544 2592 1.375523 GAGGGAATGGCGTCGTTGT 60.376 57.895 0.00 0.00 0.00 3.32
2545 2593 2.106683 GGAGGGAATGGCGTCGTTG 61.107 63.158 0.00 0.00 0.00 4.10
2546 2594 2.267961 GGAGGGAATGGCGTCGTT 59.732 61.111 0.00 0.00 0.00 3.85
2547 2595 3.782443 GGGAGGGAATGGCGTCGT 61.782 66.667 0.00 0.00 0.00 4.34
2548 2596 2.813226 TTTGGGAGGGAATGGCGTCG 62.813 60.000 0.00 0.00 0.00 5.12
2549 2597 0.610785 TTTTGGGAGGGAATGGCGTC 60.611 55.000 0.00 0.00 0.00 5.19
2550 2598 0.898326 GTTTTGGGAGGGAATGGCGT 60.898 55.000 0.00 0.00 0.00 5.68
2551 2599 0.897863 TGTTTTGGGAGGGAATGGCG 60.898 55.000 0.00 0.00 0.00 5.69
2552 2600 0.608130 GTGTTTTGGGAGGGAATGGC 59.392 55.000 0.00 0.00 0.00 4.40
2553 2601 2.171003 GAGTGTTTTGGGAGGGAATGG 58.829 52.381 0.00 0.00 0.00 3.16
2554 2602 2.171003 GGAGTGTTTTGGGAGGGAATG 58.829 52.381 0.00 0.00 0.00 2.67
2555 2603 2.073776 AGGAGTGTTTTGGGAGGGAAT 58.926 47.619 0.00 0.00 0.00 3.01
2556 2604 1.144913 CAGGAGTGTTTTGGGAGGGAA 59.855 52.381 0.00 0.00 0.00 3.97
2557 2605 0.771127 CAGGAGTGTTTTGGGAGGGA 59.229 55.000 0.00 0.00 0.00 4.20
2558 2606 0.895559 GCAGGAGTGTTTTGGGAGGG 60.896 60.000 0.00 0.00 0.00 4.30
2559 2607 0.895559 GGCAGGAGTGTTTTGGGAGG 60.896 60.000 0.00 0.00 0.00 4.30
2560 2608 0.111253 AGGCAGGAGTGTTTTGGGAG 59.889 55.000 0.00 0.00 0.00 4.30
2561 2609 0.110486 GAGGCAGGAGTGTTTTGGGA 59.890 55.000 0.00 0.00 0.00 4.37
2562 2610 0.895559 GGAGGCAGGAGTGTTTTGGG 60.896 60.000 0.00 0.00 0.00 4.12
2563 2611 0.895559 GGGAGGCAGGAGTGTTTTGG 60.896 60.000 0.00 0.00 0.00 3.28
2564 2612 1.237285 CGGGAGGCAGGAGTGTTTTG 61.237 60.000 0.00 0.00 0.00 2.44
2565 2613 1.073199 CGGGAGGCAGGAGTGTTTT 59.927 57.895 0.00 0.00 0.00 2.43
2566 2614 2.147387 ACGGGAGGCAGGAGTGTTT 61.147 57.895 0.00 0.00 0.00 2.83
2567 2615 2.526873 ACGGGAGGCAGGAGTGTT 60.527 61.111 0.00 0.00 0.00 3.32
2568 2616 3.314331 CACGGGAGGCAGGAGTGT 61.314 66.667 0.00 0.00 0.00 3.55
2569 2617 2.362369 ATCACGGGAGGCAGGAGTG 61.362 63.158 0.00 0.00 0.00 3.51
2570 2618 2.039624 ATCACGGGAGGCAGGAGT 59.960 61.111 0.00 0.00 0.00 3.85
2571 2619 2.503061 CATCACGGGAGGCAGGAG 59.497 66.667 0.00 0.00 0.00 3.69
2572 2620 3.083349 CCATCACGGGAGGCAGGA 61.083 66.667 0.00 0.00 0.00 3.86
2577 2625 4.530857 GTCGGCCATCACGGGAGG 62.531 72.222 2.24 0.00 34.06 4.30
2578 2626 4.873129 CGTCGGCCATCACGGGAG 62.873 72.222 2.24 0.00 34.06 4.30
2607 2655 1.207085 CGAGGACTATAGCGGCGAC 59.793 63.158 12.98 1.23 0.00 5.19
2608 2656 1.226686 GACGAGGACTATAGCGGCGA 61.227 60.000 12.98 0.00 0.00 5.54
2609 2657 1.207085 GACGAGGACTATAGCGGCG 59.793 63.158 0.51 0.51 0.00 6.46
2610 2658 1.207085 CGACGAGGACTATAGCGGC 59.793 63.158 0.00 0.00 0.00 6.53
2611 2659 0.235144 CACGACGAGGACTATAGCGG 59.765 60.000 0.00 0.00 0.00 5.52
2612 2660 0.235144 CCACGACGAGGACTATAGCG 59.765 60.000 5.25 0.00 0.00 4.26
2613 2661 0.040246 GCCACGACGAGGACTATAGC 60.040 60.000 15.98 0.00 0.00 2.97
2614 2662 1.595466 AGCCACGACGAGGACTATAG 58.405 55.000 15.98 0.00 0.00 1.31
2615 2663 2.487934 GTAGCCACGACGAGGACTATA 58.512 52.381 15.98 0.00 0.00 1.31
2616 2664 1.307097 GTAGCCACGACGAGGACTAT 58.693 55.000 15.98 0.21 0.00 2.12
2617 2665 0.745845 GGTAGCCACGACGAGGACTA 60.746 60.000 15.98 12.35 0.00 2.59
2618 2666 2.045131 GGTAGCCACGACGAGGACT 61.045 63.158 15.98 13.29 0.00 3.85
2619 2667 2.488820 GGTAGCCACGACGAGGAC 59.511 66.667 15.98 5.10 0.00 3.85
2620 2668 2.753043 GGGTAGCCACGACGAGGA 60.753 66.667 15.98 0.00 0.00 3.71
2621 2669 4.189188 CGGGTAGCCACGACGAGG 62.189 72.222 12.31 6.99 0.00 4.63
2622 2670 4.849329 GCGGGTAGCCACGACGAG 62.849 72.222 12.31 0.00 40.81 4.18
2632 2680 2.195123 CTTTTTGGGTGCGCGGGTAG 62.195 60.000 8.83 0.00 0.00 3.18
2633 2681 2.203308 TTTTTGGGTGCGCGGGTA 60.203 55.556 8.83 0.00 0.00 3.69
2634 2682 3.601685 CTTTTTGGGTGCGCGGGT 61.602 61.111 8.83 0.00 0.00 5.28
2635 2683 3.601685 ACTTTTTGGGTGCGCGGG 61.602 61.111 8.83 0.00 0.00 6.13
2636 2684 2.141122 ATCACTTTTTGGGTGCGCGG 62.141 55.000 8.83 0.00 34.97 6.46
2637 2685 0.318614 AATCACTTTTTGGGTGCGCG 60.319 50.000 0.00 0.00 34.97 6.86
2638 2686 2.287909 TGTAATCACTTTTTGGGTGCGC 60.288 45.455 0.00 0.00 34.97 6.09
2639 2687 3.634568 TGTAATCACTTTTTGGGTGCG 57.365 42.857 0.00 0.00 34.97 5.34
2640 2688 5.537188 TCAATGTAATCACTTTTTGGGTGC 58.463 37.500 0.00 0.00 34.97 5.01
2641 2689 9.703892 TTATTCAATGTAATCACTTTTTGGGTG 57.296 29.630 0.00 0.00 36.17 4.61
2667 2715 7.060421 TGTTCTCCTTAATGTTCTTGGAGTTT 58.940 34.615 0.00 0.00 43.34 2.66
2682 2730 9.958180 TTGATCTTCAATACAATGTTCTCCTTA 57.042 29.630 0.00 0.00 30.26 2.69
2683 2731 8.868522 TTGATCTTCAATACAATGTTCTCCTT 57.131 30.769 0.00 0.00 30.26 3.36
2711 2759 7.875327 AGTAGTTAGATGACTTCTTCTCTCC 57.125 40.000 0.00 0.00 35.79 3.71
2730 2780 4.166919 ACCTACGGGTCCATAGTTAGTAGT 59.833 45.833 0.00 0.00 43.38 2.73
2748 2798 5.242393 TGTGAGTAGTTTACCACAGACCTAC 59.758 44.000 0.00 0.00 36.02 3.18
2806 2856 1.133668 GGGGAATCAATCACAGAGGGG 60.134 57.143 0.00 0.00 30.77 4.79
2812 2862 1.565759 CCAGAGGGGGAATCAATCACA 59.434 52.381 0.00 0.00 30.77 3.58
2852 2902 3.138884 TCTCGAGAGATCTCATCTGGG 57.861 52.381 24.39 10.69 43.00 4.45
2860 2910 5.242838 ACAAACTTCTGTTCTCGAGAGATCT 59.757 40.000 15.94 0.00 37.29 2.75
2867 2917 2.210116 GCCACAAACTTCTGTTCTCGA 58.790 47.619 0.00 0.00 34.96 4.04
2868 2918 1.070577 CGCCACAAACTTCTGTTCTCG 60.071 52.381 0.00 0.00 34.96 4.04
2869 2919 2.032808 GTCGCCACAAACTTCTGTTCTC 60.033 50.000 0.00 0.00 34.96 2.87
2879 2929 0.317519 CCTTTTCCGTCGCCACAAAC 60.318 55.000 0.00 0.00 0.00 2.93
2880 2930 1.448922 CCCTTTTCCGTCGCCACAAA 61.449 55.000 0.00 0.00 0.00 2.83
2884 2934 2.627839 AAACCCCTTTTCCGTCGCCA 62.628 55.000 0.00 0.00 0.00 5.69
2887 2937 0.872388 CTGAAACCCCTTTTCCGTCG 59.128 55.000 0.00 0.00 42.80 5.12
2889 2939 0.554305 ACCTGAAACCCCTTTTCCGT 59.446 50.000 0.00 0.00 42.80 4.69
2892 2942 3.082548 GAGCTACCTGAAACCCCTTTTC 58.917 50.000 0.00 0.00 43.63 2.29
2897 2947 2.772515 ACATAGAGCTACCTGAAACCCC 59.227 50.000 0.00 0.00 0.00 4.95
2899 2949 4.192317 CCAACATAGAGCTACCTGAAACC 58.808 47.826 0.00 0.00 0.00 3.27
2905 2955 4.489306 GGAAACCAACATAGAGCTACCT 57.511 45.455 0.00 0.00 0.00 3.08
2950 3000 3.334691 TGCTCCGTTTGACCTAATTCTG 58.665 45.455 0.00 0.00 0.00 3.02
2951 3001 3.695830 TGCTCCGTTTGACCTAATTCT 57.304 42.857 0.00 0.00 0.00 2.40
2971 3021 3.927501 CCCCTTGGGCCCACCTTT 61.928 66.667 28.70 0.00 41.11 3.11
2992 3042 4.602259 ACACCGACACACGCCCTG 62.602 66.667 0.00 0.00 41.07 4.45
3111 3162 3.175594 ACGTAGGGTTTTACCTCCATCA 58.824 45.455 0.00 0.00 42.09 3.07
3153 3204 5.630121 TCCACTCTTGTAAACATCCACAAT 58.370 37.500 0.00 0.00 34.34 2.71
3154 3205 5.042463 TCCACTCTTGTAAACATCCACAA 57.958 39.130 0.00 0.00 33.76 3.33
3156 3207 5.491982 AGATCCACTCTTGTAAACATCCAC 58.508 41.667 0.00 0.00 0.00 4.02
3160 3211 6.620877 TGGTAGATCCACTCTTGTAAACAT 57.379 37.500 0.00 0.00 41.93 2.71
3233 3284 2.875933 CGTAGGACACAACAACAACCAT 59.124 45.455 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.