Multiple sequence alignment - TraesCS7B01G117300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G117300 chr7B 100.000 3366 0 0 1 3366 137028273 137024908 0.000000e+00 6216
1 TraesCS7B01G117300 chr7B 89.450 218 19 4 2646 2860 88338290 88338506 4.280000e-69 272
2 TraesCS7B01G117300 chr7D 94.411 1843 62 20 687 2491 170731400 170729561 0.000000e+00 2795
3 TraesCS7B01G117300 chr7D 91.709 398 29 3 2646 3041 99933203 99932808 1.770000e-152 549
4 TraesCS7B01G117300 chr7D 93.865 326 13 1 3041 3366 495878497 495878815 5.050000e-133 484
5 TraesCS7B01G117300 chr7D 83.784 407 41 15 281 672 170731779 170731383 2.470000e-96 363
6 TraesCS7B01G117300 chr7A 93.826 1717 69 19 790 2471 173639286 173637572 0.000000e+00 2549
7 TraesCS7B01G117300 chr7A 94.558 294 15 1 3074 3366 239763329 239763622 1.420000e-123 453
8 TraesCS7B01G117300 chr7A 89.057 265 17 4 261 519 173640143 173639885 5.420000e-83 318
9 TraesCS7B01G117300 chr7A 89.286 168 7 7 506 672 173639476 173639319 2.050000e-47 200
10 TraesCS7B01G117300 chr7A 100.000 53 0 0 687 739 173639336 173639284 7.690000e-17 99
11 TraesCS7B01G117300 chr5B 95.574 723 28 3 2646 3366 417342708 417341988 0.000000e+00 1155
12 TraesCS7B01G117300 chr5B 88.987 227 21 4 2641 2864 524222967 524222742 9.200000e-71 278
13 TraesCS7B01G117300 chr5B 91.908 173 8 5 2871 3038 278448006 278448177 1.560000e-58 237
14 TraesCS7B01G117300 chr6B 95.436 723 29 3 2646 3366 668978665 668977945 0.000000e+00 1149
15 TraesCS7B01G117300 chr6B 78.333 240 37 11 1208 1441 213467043 213467273 1.260000e-29 141
16 TraesCS7B01G117300 chr2A 90.524 401 34 3 2642 3041 277334659 277334262 8.270000e-146 527
17 TraesCS7B01G117300 chr2A 91.692 325 25 2 3041 3365 222277659 222277981 1.840000e-122 449
18 TraesCS7B01G117300 chr2A 91.411 326 26 2 3041 3366 656325473 656325150 2.380000e-121 446
19 TraesCS7B01G117300 chr3D 89.169 397 41 2 2646 3041 528822317 528821922 8.390000e-136 494
20 TraesCS7B01G117300 chr3D 79.371 286 45 14 1196 1474 327575784 327575506 4.430000e-44 189
21 TraesCS7B01G117300 chr2B 94.539 293 11 2 3074 3366 30249914 30249627 6.620000e-122 448
22 TraesCS7B01G117300 chr3A 91.385 325 25 3 3042 3366 391190910 391191231 3.080000e-120 442
23 TraesCS7B01G117300 chr3A 79.298 285 47 12 1196 1474 441570899 441570621 4.430000e-44 189
24 TraesCS7B01G117300 chr5A 90.184 326 23 5 3041 3366 381610567 381610251 1.870000e-112 416
25 TraesCS7B01G117300 chr5A 90.000 90 6 2 2874 2963 329225102 329225188 2.740000e-21 113
26 TraesCS7B01G117300 chr6A 88.938 226 21 4 2642 2864 535423103 535422879 3.310000e-70 276
27 TraesCS7B01G117300 chr6A 77.500 240 42 8 1208 1441 162310589 162310356 2.110000e-27 134
28 TraesCS7B01G117300 chr1B 88.496 226 21 5 2643 2864 443490108 443489884 5.540000e-68 268
29 TraesCS7B01G117300 chr3B 78.596 285 49 12 1196 1474 422157534 422157812 9.600000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G117300 chr7B 137024908 137028273 3365 True 6216.0 6216 100.00000 1 3366 1 chr7B.!!$R1 3365
1 TraesCS7B01G117300 chr7D 170729561 170731779 2218 True 1579.0 2795 89.09750 281 2491 2 chr7D.!!$R2 2210
2 TraesCS7B01G117300 chr7A 173637572 173640143 2571 True 791.5 2549 93.04225 261 2471 4 chr7A.!!$R1 2210
3 TraesCS7B01G117300 chr5B 417341988 417342708 720 True 1155.0 1155 95.57400 2646 3366 1 chr5B.!!$R1 720
4 TraesCS7B01G117300 chr6B 668977945 668978665 720 True 1149.0 1149 95.43600 2646 3366 1 chr6B.!!$R1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.104487 TAACACGAAACTCGGCCACA 59.896 50.0 2.24 0.0 45.59 4.17 F
740 1194 0.170339 GCGCCACAGACAATTAACCC 59.830 55.0 0.00 0.0 0.00 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1185 1655 0.039618 AAATGTCGCATCCCTTGGGT 59.96 50.0 5.51 0.0 39.25 4.51 R
2591 3101 0.319813 GGCGCATTGGAGTTGCTTTT 60.32 50.0 10.83 0.0 37.96 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.107029 CGGCGGTAGGATCCCATA 57.893 61.111 8.55 0.00 0.00 2.74
18 19 2.358039 CGGCGGTAGGATCCCATAA 58.642 57.895 8.55 0.00 0.00 1.90
19 20 0.902531 CGGCGGTAGGATCCCATAAT 59.097 55.000 8.55 0.00 0.00 1.28
20 21 1.134788 CGGCGGTAGGATCCCATAATC 60.135 57.143 8.55 0.00 0.00 1.75
21 22 2.188817 GGCGGTAGGATCCCATAATCT 58.811 52.381 8.55 0.00 0.00 2.40
22 23 3.371965 GGCGGTAGGATCCCATAATCTA 58.628 50.000 8.55 0.00 0.00 1.98
23 24 3.132467 GGCGGTAGGATCCCATAATCTAC 59.868 52.174 8.55 2.19 0.00 2.59
24 25 3.132467 GCGGTAGGATCCCATAATCTACC 59.868 52.174 8.55 10.83 32.20 3.18
25 26 3.380637 CGGTAGGATCCCATAATCTACCG 59.619 52.174 23.90 23.90 41.22 4.02
26 27 3.132467 GGTAGGATCCCATAATCTACCGC 59.868 52.174 8.55 0.00 0.00 5.68
27 28 2.188817 AGGATCCCATAATCTACCGCC 58.811 52.381 8.55 0.00 0.00 6.13
28 29 1.906574 GGATCCCATAATCTACCGCCA 59.093 52.381 0.00 0.00 0.00 5.69
29 30 2.505819 GGATCCCATAATCTACCGCCAT 59.494 50.000 0.00 0.00 0.00 4.40
30 31 3.535561 GATCCCATAATCTACCGCCATG 58.464 50.000 0.00 0.00 0.00 3.66
31 32 2.615391 TCCCATAATCTACCGCCATGA 58.385 47.619 0.00 0.00 0.00 3.07
32 33 2.301870 TCCCATAATCTACCGCCATGAC 59.698 50.000 0.00 0.00 0.00 3.06
33 34 2.615493 CCCATAATCTACCGCCATGACC 60.615 54.545 0.00 0.00 0.00 4.02
34 35 2.615493 CCATAATCTACCGCCATGACCC 60.615 54.545 0.00 0.00 0.00 4.46
35 36 2.097110 TAATCTACCGCCATGACCCT 57.903 50.000 0.00 0.00 0.00 4.34
36 37 1.213296 AATCTACCGCCATGACCCTT 58.787 50.000 0.00 0.00 0.00 3.95
37 38 0.469917 ATCTACCGCCATGACCCTTG 59.530 55.000 0.00 0.00 0.00 3.61
38 39 1.153168 CTACCGCCATGACCCTTGG 60.153 63.158 0.00 0.00 37.31 3.61
43 44 2.994699 CCATGACCCTTGGCGGTA 59.005 61.111 0.00 0.00 35.79 4.02
44 45 1.301623 CCATGACCCTTGGCGGTAA 59.698 57.895 0.00 0.00 35.79 2.85
45 46 0.748005 CCATGACCCTTGGCGGTAAG 60.748 60.000 0.00 0.00 35.79 2.34
55 56 3.876300 GCGGTAAGCTGAGGTGTG 58.124 61.111 0.00 0.00 44.04 3.82
56 57 2.391389 GCGGTAAGCTGAGGTGTGC 61.391 63.158 0.00 0.00 44.04 4.57
57 58 1.293498 CGGTAAGCTGAGGTGTGCT 59.707 57.895 0.00 0.00 41.82 4.40
58 59 1.016130 CGGTAAGCTGAGGTGTGCTG 61.016 60.000 0.00 0.00 39.71 4.41
59 60 0.674895 GGTAAGCTGAGGTGTGCTGG 60.675 60.000 0.00 0.00 39.71 4.85
60 61 0.321671 GTAAGCTGAGGTGTGCTGGA 59.678 55.000 0.00 0.00 39.71 3.86
61 62 0.321671 TAAGCTGAGGTGTGCTGGAC 59.678 55.000 0.00 0.00 39.71 4.02
62 63 2.721971 AAGCTGAGGTGTGCTGGACG 62.722 60.000 0.00 0.00 39.71 4.79
63 64 2.737180 CTGAGGTGTGCTGGACGT 59.263 61.111 0.00 0.00 0.00 4.34
64 65 1.069765 CTGAGGTGTGCTGGACGTT 59.930 57.895 0.00 0.00 0.00 3.99
65 66 0.317160 CTGAGGTGTGCTGGACGTTA 59.683 55.000 0.00 0.00 0.00 3.18
66 67 0.317160 TGAGGTGTGCTGGACGTTAG 59.683 55.000 0.00 0.00 0.00 2.34
67 68 0.317479 GAGGTGTGCTGGACGTTAGT 59.683 55.000 0.00 0.00 0.00 2.24
68 69 0.756903 AGGTGTGCTGGACGTTAGTT 59.243 50.000 0.00 0.00 0.00 2.24
69 70 0.865769 GGTGTGCTGGACGTTAGTTG 59.134 55.000 0.00 0.00 0.00 3.16
70 71 1.539496 GGTGTGCTGGACGTTAGTTGA 60.539 52.381 0.00 0.00 0.00 3.18
71 72 1.525619 GTGTGCTGGACGTTAGTTGAC 59.474 52.381 0.00 0.00 0.00 3.18
73 74 0.319211 TGCTGGACGTTAGTTGACGG 60.319 55.000 0.00 0.00 46.77 4.79
74 75 0.319297 GCTGGACGTTAGTTGACGGT 60.319 55.000 0.00 0.00 46.77 4.83
75 76 1.870993 GCTGGACGTTAGTTGACGGTT 60.871 52.381 0.00 0.00 46.77 4.44
76 77 1.790623 CTGGACGTTAGTTGACGGTTG 59.209 52.381 0.00 0.00 46.77 3.77
77 78 1.136695 TGGACGTTAGTTGACGGTTGT 59.863 47.619 0.00 0.00 46.77 3.32
78 79 1.523934 GGACGTTAGTTGACGGTTGTG 59.476 52.381 0.00 0.00 46.77 3.33
79 80 1.523934 GACGTTAGTTGACGGTTGTGG 59.476 52.381 0.00 0.00 46.77 4.17
80 81 0.233848 CGTTAGTTGACGGTTGTGGC 59.766 55.000 0.00 0.00 39.27 5.01
81 82 0.589708 GTTAGTTGACGGTTGTGGCC 59.410 55.000 0.00 0.00 0.00 5.36
88 89 3.047877 CGGTTGTGGCCGTCTTCC 61.048 66.667 0.00 0.00 46.11 3.46
89 90 2.430367 GGTTGTGGCCGTCTTCCT 59.570 61.111 0.00 0.00 0.00 3.36
90 91 1.675219 GGTTGTGGCCGTCTTCCTA 59.325 57.895 0.00 0.00 0.00 2.94
91 92 0.252197 GGTTGTGGCCGTCTTCCTAT 59.748 55.000 0.00 0.00 0.00 2.57
92 93 1.653151 GTTGTGGCCGTCTTCCTATC 58.347 55.000 0.00 0.00 0.00 2.08
93 94 0.174845 TTGTGGCCGTCTTCCTATCG 59.825 55.000 0.00 0.00 0.00 2.92
94 95 1.591863 GTGGCCGTCTTCCTATCGC 60.592 63.158 0.00 0.00 0.00 4.58
95 96 2.029221 GGCCGTCTTCCTATCGCC 59.971 66.667 0.00 0.00 0.00 5.54
96 97 2.354773 GCCGTCTTCCTATCGCCG 60.355 66.667 0.00 0.00 0.00 6.46
97 98 2.842256 GCCGTCTTCCTATCGCCGA 61.842 63.158 0.00 0.00 0.00 5.54
98 99 1.283181 CCGTCTTCCTATCGCCGAG 59.717 63.158 0.00 0.00 0.00 4.63
99 100 1.370657 CGTCTTCCTATCGCCGAGC 60.371 63.158 0.00 0.00 0.00 5.03
100 101 1.007154 GTCTTCCTATCGCCGAGCC 60.007 63.158 0.00 0.00 0.00 4.70
101 102 1.152735 TCTTCCTATCGCCGAGCCT 60.153 57.895 0.00 0.00 0.00 4.58
102 103 1.173444 TCTTCCTATCGCCGAGCCTC 61.173 60.000 0.00 0.00 0.00 4.70
103 104 1.152735 TTCCTATCGCCGAGCCTCT 60.153 57.895 0.00 0.00 0.00 3.69
104 105 0.755698 TTCCTATCGCCGAGCCTCTT 60.756 55.000 0.00 0.00 0.00 2.85
105 106 1.006805 CCTATCGCCGAGCCTCTTG 60.007 63.158 0.00 0.00 0.00 3.02
106 107 1.456196 CCTATCGCCGAGCCTCTTGA 61.456 60.000 0.00 0.00 0.00 3.02
107 108 0.318275 CTATCGCCGAGCCTCTTGAC 60.318 60.000 0.00 0.00 0.00 3.18
108 109 2.060004 TATCGCCGAGCCTCTTGACG 62.060 60.000 0.00 0.00 0.00 4.35
110 111 4.070552 GCCGAGCCTCTTGACGGT 62.071 66.667 0.00 0.00 45.91 4.83
111 112 2.707849 GCCGAGCCTCTTGACGGTA 61.708 63.158 0.00 0.00 45.91 4.02
112 113 1.433879 CCGAGCCTCTTGACGGTAG 59.566 63.158 0.00 0.00 40.42 3.18
113 114 1.433879 CGAGCCTCTTGACGGTAGG 59.566 63.158 0.00 0.00 0.00 3.18
114 115 1.313812 CGAGCCTCTTGACGGTAGGT 61.314 60.000 0.00 0.00 32.67 3.08
115 116 0.896226 GAGCCTCTTGACGGTAGGTT 59.104 55.000 0.00 0.00 32.67 3.50
116 117 0.608640 AGCCTCTTGACGGTAGGTTG 59.391 55.000 0.00 0.00 32.67 3.77
117 118 0.606604 GCCTCTTGACGGTAGGTTGA 59.393 55.000 0.00 0.00 32.67 3.18
118 119 1.672145 GCCTCTTGACGGTAGGTTGAC 60.672 57.143 0.00 0.00 32.67 3.18
119 120 1.893801 CCTCTTGACGGTAGGTTGACT 59.106 52.381 0.00 0.00 0.00 3.41
120 121 2.352814 CCTCTTGACGGTAGGTTGACTG 60.353 54.545 0.00 0.00 0.00 3.51
121 122 2.557056 CTCTTGACGGTAGGTTGACTGA 59.443 50.000 0.00 0.00 0.00 3.41
122 123 3.162666 TCTTGACGGTAGGTTGACTGAT 58.837 45.455 0.00 0.00 0.00 2.90
123 124 3.192844 TCTTGACGGTAGGTTGACTGATC 59.807 47.826 0.00 0.00 0.00 2.92
124 125 1.822990 TGACGGTAGGTTGACTGATCC 59.177 52.381 0.00 0.00 0.00 3.36
125 126 2.100989 GACGGTAGGTTGACTGATCCT 58.899 52.381 0.00 0.00 35.60 3.24
126 127 3.285484 GACGGTAGGTTGACTGATCCTA 58.715 50.000 0.00 0.00 33.34 2.94
127 128 3.890147 GACGGTAGGTTGACTGATCCTAT 59.110 47.826 0.00 0.00 36.43 2.57
128 129 3.890147 ACGGTAGGTTGACTGATCCTATC 59.110 47.826 0.00 0.00 36.43 2.08
129 130 3.058155 CGGTAGGTTGACTGATCCTATCG 60.058 52.174 8.37 8.37 46.75 2.92
130 131 3.305471 GGTAGGTTGACTGATCCTATCGC 60.305 52.174 0.00 0.00 36.43 4.58
131 132 1.689273 AGGTTGACTGATCCTATCGCC 59.311 52.381 0.00 0.00 0.00 5.54
132 133 1.603172 GGTTGACTGATCCTATCGCCG 60.603 57.143 0.00 0.00 0.00 6.46
133 134 1.337071 GTTGACTGATCCTATCGCCGA 59.663 52.381 0.00 0.00 0.00 5.54
134 135 1.239347 TGACTGATCCTATCGCCGAG 58.761 55.000 0.00 0.00 0.00 4.63
135 136 0.109504 GACTGATCCTATCGCCGAGC 60.110 60.000 0.00 0.00 0.00 5.03
136 137 1.214062 CTGATCCTATCGCCGAGCC 59.786 63.158 0.00 0.00 0.00 4.70
137 138 2.219325 CTGATCCTATCGCCGAGCCC 62.219 65.000 0.00 0.00 0.00 5.19
138 139 2.997897 ATCCTATCGCCGAGCCCC 60.998 66.667 0.00 0.00 0.00 5.80
153 154 3.486001 CCCCCTGGTGGTTACGAA 58.514 61.111 0.00 0.00 0.00 3.85
154 155 1.762471 CCCCCTGGTGGTTACGAAA 59.238 57.895 0.00 0.00 0.00 3.46
155 156 0.322187 CCCCCTGGTGGTTACGAAAG 60.322 60.000 0.00 0.00 0.00 2.62
156 157 0.322187 CCCCTGGTGGTTACGAAAGG 60.322 60.000 0.00 0.00 0.00 3.11
157 158 0.322187 CCCTGGTGGTTACGAAAGGG 60.322 60.000 2.81 2.81 36.79 3.95
158 159 0.399075 CCTGGTGGTTACGAAAGGGT 59.601 55.000 0.00 0.00 0.00 4.34
159 160 1.609841 CCTGGTGGTTACGAAAGGGTC 60.610 57.143 0.00 0.00 0.00 4.46
160 161 1.071071 CTGGTGGTTACGAAAGGGTCA 59.929 52.381 0.00 0.00 0.00 4.02
161 162 1.071071 TGGTGGTTACGAAAGGGTCAG 59.929 52.381 0.00 0.00 0.00 3.51
162 163 1.345415 GGTGGTTACGAAAGGGTCAGA 59.655 52.381 0.00 0.00 0.00 3.27
163 164 2.027469 GGTGGTTACGAAAGGGTCAGAT 60.027 50.000 0.00 0.00 0.00 2.90
164 165 3.558533 GGTGGTTACGAAAGGGTCAGATT 60.559 47.826 0.00 0.00 0.00 2.40
165 166 4.070009 GTGGTTACGAAAGGGTCAGATTT 58.930 43.478 0.00 0.00 0.00 2.17
166 167 5.240121 GTGGTTACGAAAGGGTCAGATTTA 58.760 41.667 0.00 0.00 0.00 1.40
167 168 5.702209 GTGGTTACGAAAGGGTCAGATTTAA 59.298 40.000 0.00 0.00 0.00 1.52
168 169 6.205270 GTGGTTACGAAAGGGTCAGATTTAAA 59.795 38.462 0.00 0.00 0.00 1.52
169 170 6.771749 TGGTTACGAAAGGGTCAGATTTAAAA 59.228 34.615 0.00 0.00 0.00 1.52
170 171 7.284944 TGGTTACGAAAGGGTCAGATTTAAAAA 59.715 33.333 0.00 0.00 0.00 1.94
195 196 5.629079 AAAATTGAAACGGAGGTCAGATC 57.371 39.130 0.00 0.00 0.00 2.75
196 197 4.559862 AATTGAAACGGAGGTCAGATCT 57.440 40.909 0.00 0.00 0.00 2.75
197 198 3.594603 TTGAAACGGAGGTCAGATCTC 57.405 47.619 1.46 1.46 0.00 2.75
198 199 1.472878 TGAAACGGAGGTCAGATCTCG 59.527 52.381 4.51 3.18 32.34 4.04
199 200 1.743958 GAAACGGAGGTCAGATCTCGA 59.256 52.381 4.51 0.00 32.34 4.04
200 201 1.835494 AACGGAGGTCAGATCTCGAA 58.165 50.000 4.51 0.00 32.34 3.71
201 202 2.060050 ACGGAGGTCAGATCTCGAAT 57.940 50.000 4.51 0.00 32.34 3.34
202 203 2.379972 ACGGAGGTCAGATCTCGAATT 58.620 47.619 4.51 0.00 32.34 2.17
203 204 2.761208 ACGGAGGTCAGATCTCGAATTT 59.239 45.455 4.51 0.00 32.34 1.82
204 205 3.181485 ACGGAGGTCAGATCTCGAATTTC 60.181 47.826 4.51 0.00 32.34 2.17
205 206 3.067461 CGGAGGTCAGATCTCGAATTTCT 59.933 47.826 4.51 0.00 32.34 2.52
206 207 4.276183 CGGAGGTCAGATCTCGAATTTCTA 59.724 45.833 4.51 0.00 32.34 2.10
207 208 5.525199 GGAGGTCAGATCTCGAATTTCTAC 58.475 45.833 4.51 0.00 32.34 2.59
208 209 5.176407 AGGTCAGATCTCGAATTTCTACG 57.824 43.478 0.00 0.00 0.00 3.51
209 210 3.731717 GGTCAGATCTCGAATTTCTACGC 59.268 47.826 0.00 0.00 0.00 4.42
210 211 4.498345 GGTCAGATCTCGAATTTCTACGCT 60.498 45.833 0.00 0.00 0.00 5.07
211 212 5.277876 GGTCAGATCTCGAATTTCTACGCTA 60.278 44.000 0.00 0.00 0.00 4.26
212 213 6.200100 GTCAGATCTCGAATTTCTACGCTAA 58.800 40.000 0.00 0.00 0.00 3.09
213 214 6.691818 GTCAGATCTCGAATTTCTACGCTAAA 59.308 38.462 0.00 0.00 0.00 1.85
214 215 7.220300 GTCAGATCTCGAATTTCTACGCTAAAA 59.780 37.037 0.00 0.00 0.00 1.52
215 216 7.432545 TCAGATCTCGAATTTCTACGCTAAAAG 59.567 37.037 0.00 0.00 0.00 2.27
216 217 6.697892 AGATCTCGAATTTCTACGCTAAAAGG 59.302 38.462 0.00 0.00 0.00 3.11
217 218 5.107133 TCTCGAATTTCTACGCTAAAAGGG 58.893 41.667 0.00 0.00 0.00 3.95
218 219 4.824289 TCGAATTTCTACGCTAAAAGGGT 58.176 39.130 2.10 2.10 44.07 4.34
219 220 4.866486 TCGAATTTCTACGCTAAAAGGGTC 59.134 41.667 0.00 0.00 40.76 4.46
220 221 4.628333 CGAATTTCTACGCTAAAAGGGTCA 59.372 41.667 0.00 0.00 40.76 4.02
221 222 5.293569 CGAATTTCTACGCTAAAAGGGTCAT 59.706 40.000 0.00 0.00 40.76 3.06
222 223 6.477688 CGAATTTCTACGCTAAAAGGGTCATA 59.522 38.462 0.00 0.00 40.76 2.15
223 224 7.010738 CGAATTTCTACGCTAAAAGGGTCATAA 59.989 37.037 0.00 0.00 40.76 1.90
224 225 6.973229 TTTCTACGCTAAAAGGGTCATAAC 57.027 37.500 0.00 0.00 40.76 1.89
225 226 5.664294 TCTACGCTAAAAGGGTCATAACA 57.336 39.130 0.00 0.00 40.76 2.41
226 227 5.413499 TCTACGCTAAAAGGGTCATAACAC 58.587 41.667 0.00 0.00 40.76 3.32
227 228 2.997986 ACGCTAAAAGGGTCATAACACG 59.002 45.455 0.00 0.00 36.62 4.49
228 229 3.255725 CGCTAAAAGGGTCATAACACGA 58.744 45.455 0.00 0.00 32.44 4.35
229 230 3.680937 CGCTAAAAGGGTCATAACACGAA 59.319 43.478 0.00 0.00 32.44 3.85
230 231 4.152759 CGCTAAAAGGGTCATAACACGAAA 59.847 41.667 0.00 0.00 32.44 3.46
231 232 5.388111 GCTAAAAGGGTCATAACACGAAAC 58.612 41.667 0.00 0.00 32.44 2.78
232 233 5.180680 GCTAAAAGGGTCATAACACGAAACT 59.819 40.000 0.00 0.00 32.44 2.66
233 234 5.684550 AAAAGGGTCATAACACGAAACTC 57.315 39.130 0.00 0.00 32.44 3.01
234 235 2.955614 AGGGTCATAACACGAAACTCG 58.044 47.619 0.00 0.00 46.93 4.18
235 236 1.997606 GGGTCATAACACGAAACTCGG 59.002 52.381 0.67 0.00 45.59 4.63
236 237 1.392510 GGTCATAACACGAAACTCGGC 59.607 52.381 0.67 0.00 45.59 5.54
237 238 1.392510 GTCATAACACGAAACTCGGCC 59.607 52.381 0.00 0.00 45.59 6.13
238 239 1.001068 TCATAACACGAAACTCGGCCA 59.999 47.619 2.24 0.00 45.59 5.36
239 240 1.127951 CATAACACGAAACTCGGCCAC 59.872 52.381 2.24 0.00 45.59 5.01
240 241 0.104487 TAACACGAAACTCGGCCACA 59.896 50.000 2.24 0.00 45.59 4.17
241 242 0.745128 AACACGAAACTCGGCCACAA 60.745 50.000 2.24 0.00 45.59 3.33
242 243 1.278637 CACGAAACTCGGCCACAAC 59.721 57.895 2.24 0.00 45.59 3.32
243 244 1.153329 ACGAAACTCGGCCACAACA 60.153 52.632 2.24 0.00 45.59 3.33
244 245 1.278637 CGAAACTCGGCCACAACAC 59.721 57.895 2.24 0.00 36.00 3.32
245 246 1.278637 GAAACTCGGCCACAACACG 59.721 57.895 2.24 0.00 0.00 4.49
246 247 2.113131 GAAACTCGGCCACAACACGG 62.113 60.000 2.24 0.00 0.00 4.94
253 254 4.403137 CCACAACACGGCATGCGG 62.403 66.667 22.34 22.34 0.00 5.69
254 255 4.403137 CACAACACGGCATGCGGG 62.403 66.667 26.58 18.21 0.00 6.13
274 275 4.891727 GATCGATGCCGCCGGTGT 62.892 66.667 15.14 0.00 35.37 4.16
324 329 0.824109 CGGTGCTGGGTCTCTCATTA 59.176 55.000 0.00 0.00 0.00 1.90
331 336 2.437281 CTGGGTCTCTCATTATGCCTGT 59.563 50.000 0.00 0.00 0.00 4.00
422 427 2.355108 GCGGCACCTCATCATACCATAT 60.355 50.000 0.00 0.00 0.00 1.78
423 428 3.118775 GCGGCACCTCATCATACCATATA 60.119 47.826 0.00 0.00 0.00 0.86
451 459 2.662596 CTCCGCCCTTGTGCTACA 59.337 61.111 0.00 0.00 0.00 2.74
458 466 1.001378 GCCCTTGTGCTACAACACTTG 60.001 52.381 0.00 0.00 41.30 3.16
540 966 1.363807 GTTGCTTGCCCAAGTGACC 59.636 57.895 9.53 0.00 40.45 4.02
611 1060 0.450482 CCAGTACGCGCGTTTCAAAG 60.450 55.000 42.10 22.89 0.00 2.77
624 1073 0.237235 TTCAAAGTAAAGCGCAGGCG 59.763 50.000 11.47 9.68 46.35 5.52
664 1118 1.604147 CCGGCCCTTTCCCATCAAAC 61.604 60.000 0.00 0.00 0.00 2.93
665 1119 1.604147 CGGCCCTTTCCCATCAAACC 61.604 60.000 0.00 0.00 0.00 3.27
666 1120 0.544120 GGCCCTTTCCCATCAAACCA 60.544 55.000 0.00 0.00 0.00 3.67
667 1121 1.347062 GCCCTTTCCCATCAAACCAA 58.653 50.000 0.00 0.00 0.00 3.67
668 1122 1.696884 GCCCTTTCCCATCAAACCAAA 59.303 47.619 0.00 0.00 0.00 3.28
669 1123 2.289631 GCCCTTTCCCATCAAACCAAAG 60.290 50.000 0.00 0.00 0.00 2.77
670 1124 2.289631 CCCTTTCCCATCAAACCAAAGC 60.290 50.000 0.00 0.00 0.00 3.51
671 1125 2.634453 CCTTTCCCATCAAACCAAAGCT 59.366 45.455 0.00 0.00 0.00 3.74
672 1126 3.071457 CCTTTCCCATCAAACCAAAGCTT 59.929 43.478 0.00 0.00 0.00 3.74
673 1127 4.444733 CCTTTCCCATCAAACCAAAGCTTT 60.445 41.667 5.69 5.69 0.00 3.51
674 1128 4.769345 TTCCCATCAAACCAAAGCTTTT 57.231 36.364 9.53 0.00 0.00 2.27
675 1129 4.769345 TCCCATCAAACCAAAGCTTTTT 57.231 36.364 9.53 0.00 0.00 1.94
740 1194 0.170339 GCGCCACAGACAATTAACCC 59.830 55.000 0.00 0.00 0.00 4.11
977 1447 1.723870 GCTTCTGGCCATTGTAGCG 59.276 57.895 5.51 0.00 34.27 4.26
979 1449 1.737838 CTTCTGGCCATTGTAGCGAA 58.262 50.000 5.51 3.17 0.00 4.70
999 1469 2.363795 AGATCCCCGAACCAGCGA 60.364 61.111 0.00 0.00 0.00 4.93
1142 1612 1.874345 GCCTCAGTTTCCTCGTCGGA 61.874 60.000 0.00 0.00 41.06 4.55
1475 1945 2.152016 GTGCCTCTTGTCCAAGGTAAC 58.848 52.381 7.16 0.00 38.88 2.50
1476 1946 1.073284 TGCCTCTTGTCCAAGGTAACC 59.927 52.381 7.16 0.00 38.88 2.85
1477 1947 1.944430 GCCTCTTGTCCAAGGTAACCG 60.944 57.143 7.16 0.00 38.88 4.44
1479 1949 2.612221 CCTCTTGTCCAAGGTAACCGTC 60.612 54.545 7.16 0.00 38.88 4.79
1481 1951 2.036733 TCTTGTCCAAGGTAACCGTCAG 59.963 50.000 7.16 0.00 38.88 3.51
1482 1952 1.416243 TGTCCAAGGTAACCGTCAGT 58.584 50.000 0.00 0.00 37.17 3.41
1483 1953 1.764134 TGTCCAAGGTAACCGTCAGTT 59.236 47.619 0.00 0.00 42.83 3.16
1485 1955 3.387374 TGTCCAAGGTAACCGTCAGTTTA 59.613 43.478 0.00 0.00 40.05 2.01
1501 1995 7.041644 CCGTCAGTTTAAAATTTCAGTCCACTA 60.042 37.037 0.00 0.00 0.00 2.74
1512 2006 9.643693 AAATTTCAGTCCACTAATTATTGCAAG 57.356 29.630 4.94 0.00 0.00 4.01
1517 2011 8.677300 TCAGTCCACTAATTATTGCAAGAAATC 58.323 33.333 11.02 0.00 0.00 2.17
1528 2027 5.784750 TTGCAAGAAATCACTGATCTACG 57.215 39.130 0.00 0.00 0.00 3.51
1529 2028 5.072040 TGCAAGAAATCACTGATCTACGA 57.928 39.130 0.00 0.00 0.00 3.43
1534 2033 7.413438 GCAAGAAATCACTGATCTACGAAATGT 60.413 37.037 0.00 0.00 0.00 2.71
1540 2039 9.770097 AATCACTGATCTACGAAATGTATGATT 57.230 29.630 0.00 0.00 33.56 2.57
1568 2067 8.705594 ACATTTTCGATTATTAGAGAGGGAGAA 58.294 33.333 0.00 0.00 0.00 2.87
1720 2220 1.006102 CGTCAAGGCGAACCAGTCT 60.006 57.895 0.00 0.00 39.06 3.24
1777 2277 3.574445 CTCGACGAGCCGGACGAT 61.574 66.667 23.84 11.01 38.43 3.73
1824 2324 1.438562 GACTACCTCGTCCTCTCGGC 61.439 65.000 0.00 0.00 0.00 5.54
1972 2472 4.430765 CTGCGGGCGGTTACGAGT 62.431 66.667 0.00 0.00 44.60 4.18
1987 2487 1.072505 GAGTCACCCGGGCTTCAAA 59.927 57.895 24.08 0.00 0.00 2.69
2151 2651 3.760035 GGAGGAGTTCGCGCAGGA 61.760 66.667 8.75 0.00 0.00 3.86
2391 2901 2.202518 ACCGTAATGTCGTCGGCG 60.203 61.111 1.15 1.15 46.92 6.46
2392 2902 2.202518 CCGTAATGTCGTCGGCGT 60.203 61.111 10.18 0.00 37.90 5.68
2451 2961 2.490115 TGTTACGGAAATTCCATGTGGC 59.510 45.455 13.04 1.80 35.91 5.01
2484 2994 4.489679 AAGAATTTGCCGTCTGTTCTTC 57.510 40.909 0.00 0.00 34.95 2.87
2485 2995 3.744660 AGAATTTGCCGTCTGTTCTTCT 58.255 40.909 0.00 0.00 0.00 2.85
2486 2996 4.137543 AGAATTTGCCGTCTGTTCTTCTT 58.862 39.130 0.00 0.00 0.00 2.52
2487 2997 4.214332 AGAATTTGCCGTCTGTTCTTCTTC 59.786 41.667 0.00 0.00 0.00 2.87
2488 2998 2.910688 TTGCCGTCTGTTCTTCTTCT 57.089 45.000 0.00 0.00 0.00 2.85
2489 2999 2.910688 TGCCGTCTGTTCTTCTTCTT 57.089 45.000 0.00 0.00 0.00 2.52
2490 3000 3.194005 TGCCGTCTGTTCTTCTTCTTT 57.806 42.857 0.00 0.00 0.00 2.52
2491 3001 3.541632 TGCCGTCTGTTCTTCTTCTTTT 58.458 40.909 0.00 0.00 0.00 2.27
2492 3002 4.699637 TGCCGTCTGTTCTTCTTCTTTTA 58.300 39.130 0.00 0.00 0.00 1.52
2493 3003 5.305585 TGCCGTCTGTTCTTCTTCTTTTAT 58.694 37.500 0.00 0.00 0.00 1.40
2494 3004 5.763204 TGCCGTCTGTTCTTCTTCTTTTATT 59.237 36.000 0.00 0.00 0.00 1.40
2495 3005 6.932400 TGCCGTCTGTTCTTCTTCTTTTATTA 59.068 34.615 0.00 0.00 0.00 0.98
2496 3006 7.442969 TGCCGTCTGTTCTTCTTCTTTTATTAA 59.557 33.333 0.00 0.00 0.00 1.40
2497 3007 8.287503 GCCGTCTGTTCTTCTTCTTTTATTAAA 58.712 33.333 0.00 0.00 0.00 1.52
2541 3051 9.476202 TCAATCACTAGATAATTGTTCATACGG 57.524 33.333 0.00 0.00 33.08 4.02
2542 3052 9.476202 CAATCACTAGATAATTGTTCATACGGA 57.524 33.333 0.00 0.00 33.08 4.69
2543 3053 9.698309 AATCACTAGATAATTGTTCATACGGAG 57.302 33.333 0.00 0.00 33.08 4.63
2544 3054 8.861086 ATCACTAGATAATTGTTCATACGGAGT 58.139 33.333 0.00 0.00 37.32 3.85
2557 3067 1.971481 ACGGAGTACAAAACCAACCC 58.029 50.000 0.00 0.00 41.94 4.11
2558 3068 0.869730 CGGAGTACAAAACCAACCCG 59.130 55.000 0.00 0.00 0.00 5.28
2559 3069 1.241165 GGAGTACAAAACCAACCCGG 58.759 55.000 0.00 0.00 42.50 5.73
2560 3070 1.202794 GGAGTACAAAACCAACCCGGA 60.203 52.381 0.73 0.00 38.63 5.14
2561 3071 2.553685 GGAGTACAAAACCAACCCGGAT 60.554 50.000 0.73 0.00 38.63 4.18
2562 3072 2.486592 GAGTACAAAACCAACCCGGATG 59.513 50.000 0.73 0.64 38.63 3.51
2563 3073 2.158579 AGTACAAAACCAACCCGGATGT 60.159 45.455 0.73 0.00 38.63 3.06
2564 3074 2.660670 ACAAAACCAACCCGGATGTA 57.339 45.000 0.73 0.00 38.63 2.29
2565 3075 2.946785 ACAAAACCAACCCGGATGTAA 58.053 42.857 0.73 0.00 38.63 2.41
2566 3076 3.297736 ACAAAACCAACCCGGATGTAAA 58.702 40.909 0.73 0.00 38.63 2.01
2567 3077 3.705072 ACAAAACCAACCCGGATGTAAAA 59.295 39.130 0.73 0.00 38.63 1.52
2568 3078 4.202172 ACAAAACCAACCCGGATGTAAAAG 60.202 41.667 0.73 0.00 38.63 2.27
2569 3079 2.963599 ACCAACCCGGATGTAAAAGT 57.036 45.000 0.73 0.00 38.63 2.66
2570 3080 3.232720 ACCAACCCGGATGTAAAAGTT 57.767 42.857 0.73 0.00 38.63 2.66
2571 3081 3.151554 ACCAACCCGGATGTAAAAGTTC 58.848 45.455 0.73 0.00 38.63 3.01
2572 3082 3.181437 ACCAACCCGGATGTAAAAGTTCT 60.181 43.478 0.73 0.00 38.63 3.01
2573 3083 4.041938 ACCAACCCGGATGTAAAAGTTCTA 59.958 41.667 0.73 0.00 38.63 2.10
2574 3084 4.634443 CCAACCCGGATGTAAAAGTTCTAG 59.366 45.833 0.73 0.00 36.56 2.43
2575 3085 5.243207 CAACCCGGATGTAAAAGTTCTAGT 58.757 41.667 0.73 0.00 0.00 2.57
2576 3086 6.400568 CAACCCGGATGTAAAAGTTCTAGTA 58.599 40.000 0.73 0.00 0.00 1.82
2577 3087 6.218108 ACCCGGATGTAAAAGTTCTAGTAG 57.782 41.667 0.73 0.00 0.00 2.57
2578 3088 5.128335 ACCCGGATGTAAAAGTTCTAGTAGG 59.872 44.000 0.73 0.00 0.00 3.18
2579 3089 5.128335 CCCGGATGTAAAAGTTCTAGTAGGT 59.872 44.000 0.73 0.00 0.00 3.08
2580 3090 6.351626 CCCGGATGTAAAAGTTCTAGTAGGTT 60.352 42.308 0.73 0.00 0.00 3.50
2581 3091 7.147846 CCCGGATGTAAAAGTTCTAGTAGGTTA 60.148 40.741 0.73 0.00 0.00 2.85
2582 3092 7.704047 CCGGATGTAAAAGTTCTAGTAGGTTAC 59.296 40.741 0.00 0.85 0.00 2.50
2583 3093 8.465201 CGGATGTAAAAGTTCTAGTAGGTTACT 58.535 37.037 0.00 0.00 42.68 2.24
2596 3106 6.201226 AGTAGGTTACTAGACCGTAAAAGC 57.799 41.667 0.00 0.00 44.62 3.51
2597 3107 5.711976 AGTAGGTTACTAGACCGTAAAAGCA 59.288 40.000 0.00 0.00 44.62 3.91
2598 3108 5.473066 AGGTTACTAGACCGTAAAAGCAA 57.527 39.130 0.00 0.00 44.62 3.91
2599 3109 5.233225 AGGTTACTAGACCGTAAAAGCAAC 58.767 41.667 0.00 0.00 44.62 4.17
2600 3110 5.011431 AGGTTACTAGACCGTAAAAGCAACT 59.989 40.000 0.00 0.00 44.62 3.16
2601 3111 5.347093 GGTTACTAGACCGTAAAAGCAACTC 59.653 44.000 0.00 0.00 31.73 3.01
2602 3112 3.922910 ACTAGACCGTAAAAGCAACTCC 58.077 45.455 0.00 0.00 0.00 3.85
2603 3113 2.922740 AGACCGTAAAAGCAACTCCA 57.077 45.000 0.00 0.00 0.00 3.86
2604 3114 3.202829 AGACCGTAAAAGCAACTCCAA 57.797 42.857 0.00 0.00 0.00 3.53
2605 3115 3.751518 AGACCGTAAAAGCAACTCCAAT 58.248 40.909 0.00 0.00 0.00 3.16
2606 3116 3.502211 AGACCGTAAAAGCAACTCCAATG 59.498 43.478 0.00 0.00 0.00 2.82
2607 3117 2.030274 ACCGTAAAAGCAACTCCAATGC 60.030 45.455 0.00 0.00 44.15 3.56
2612 3122 3.903783 GCAACTCCAATGCGCCTA 58.096 55.556 4.18 0.00 33.57 3.93
2613 3123 1.429423 GCAACTCCAATGCGCCTAC 59.571 57.895 4.18 0.00 33.57 3.18
2614 3124 1.993369 GCAACTCCAATGCGCCTACC 61.993 60.000 4.18 0.00 33.57 3.18
2615 3125 1.077716 AACTCCAATGCGCCTACCC 60.078 57.895 4.18 0.00 0.00 3.69
2616 3126 1.847798 AACTCCAATGCGCCTACCCA 61.848 55.000 4.18 0.00 0.00 4.51
2617 3127 1.149174 CTCCAATGCGCCTACCCAT 59.851 57.895 4.18 0.00 0.00 4.00
2618 3128 0.466189 CTCCAATGCGCCTACCCATT 60.466 55.000 4.18 0.00 32.20 3.16
2619 3129 0.033601 TCCAATGCGCCTACCCATTT 60.034 50.000 4.18 0.00 29.71 2.32
2620 3130 1.213182 TCCAATGCGCCTACCCATTTA 59.787 47.619 4.18 0.00 29.71 1.40
2621 3131 1.608590 CCAATGCGCCTACCCATTTAG 59.391 52.381 4.18 0.00 29.71 1.85
2622 3132 2.297701 CAATGCGCCTACCCATTTAGT 58.702 47.619 4.18 0.00 29.71 2.24
2623 3133 2.256117 ATGCGCCTACCCATTTAGTC 57.744 50.000 4.18 0.00 0.00 2.59
2624 3134 1.200519 TGCGCCTACCCATTTAGTCT 58.799 50.000 4.18 0.00 0.00 3.24
2625 3135 2.390696 TGCGCCTACCCATTTAGTCTA 58.609 47.619 4.18 0.00 0.00 2.59
2626 3136 2.364324 TGCGCCTACCCATTTAGTCTAG 59.636 50.000 4.18 0.00 0.00 2.43
2627 3137 2.626743 GCGCCTACCCATTTAGTCTAGA 59.373 50.000 0.00 0.00 0.00 2.43
2628 3138 3.552478 GCGCCTACCCATTTAGTCTAGAC 60.552 52.174 15.41 15.41 0.00 2.59
2629 3139 3.304525 CGCCTACCCATTTAGTCTAGACG 60.305 52.174 17.07 3.84 36.20 4.18
2630 3140 3.552478 GCCTACCCATTTAGTCTAGACGC 60.552 52.174 17.07 6.26 36.20 5.19
2631 3141 2.865343 ACCCATTTAGTCTAGACGCG 57.135 50.000 17.07 3.53 36.20 6.01
2632 3142 1.202382 ACCCATTTAGTCTAGACGCGC 60.202 52.381 17.07 0.00 36.20 6.86
2633 3143 1.202371 CCCATTTAGTCTAGACGCGCA 60.202 52.381 17.07 3.61 36.20 6.09
2634 3144 2.120232 CCATTTAGTCTAGACGCGCAG 58.880 52.381 17.07 8.64 36.20 5.18
2635 3145 2.223502 CCATTTAGTCTAGACGCGCAGA 60.224 50.000 17.07 3.36 36.20 4.26
2636 3146 3.551046 CCATTTAGTCTAGACGCGCAGAT 60.551 47.826 17.07 0.56 36.20 2.90
2637 3147 4.320275 CCATTTAGTCTAGACGCGCAGATA 60.320 45.833 17.07 0.00 36.20 1.98
2638 3148 4.469625 TTTAGTCTAGACGCGCAGATAG 57.530 45.455 17.07 5.79 36.20 2.08
2639 3149 2.242047 AGTCTAGACGCGCAGATAGA 57.758 50.000 17.07 8.30 36.20 1.98
2640 3150 2.562635 AGTCTAGACGCGCAGATAGAA 58.437 47.619 17.07 0.00 36.20 2.10
2641 3151 2.943690 AGTCTAGACGCGCAGATAGAAA 59.056 45.455 17.07 0.00 36.20 2.52
2642 3152 3.377485 AGTCTAGACGCGCAGATAGAAAA 59.623 43.478 17.07 0.00 36.20 2.29
2643 3153 4.103357 GTCTAGACGCGCAGATAGAAAAA 58.897 43.478 5.73 0.00 0.00 1.94
2681 3191 5.001833 TCAGGTACCCTAACTTGTACAGA 57.998 43.478 8.74 0.00 39.23 3.41
2707 3217 6.050432 TGTGACGATTTAGTACCAAACTTGT 58.950 36.000 0.00 0.00 39.80 3.16
2719 3229 8.228035 AGTACCAAACTTGTAAAATGCAACTA 57.772 30.769 0.00 0.00 33.35 2.24
2735 3246 4.041815 TGCAACTACACCATACCCAACTTA 59.958 41.667 0.00 0.00 0.00 2.24
2783 3294 1.754803 CCTATCACAGCCCGACAAGTA 59.245 52.381 0.00 0.00 0.00 2.24
2829 3340 1.583404 CGCACACACTTTTGCAGAAAC 59.417 47.619 0.00 0.00 38.76 2.78
2834 3345 1.342975 ACACTTTTGCAGAAACCCCCT 60.343 47.619 0.00 0.00 0.00 4.79
2835 3346 1.069049 CACTTTTGCAGAAACCCCCTG 59.931 52.381 0.00 0.00 34.88 4.45
2860 3372 1.083489 TTCTTTAATCAGCCCGCACG 58.917 50.000 0.00 0.00 0.00 5.34
2916 3428 0.107993 TGATCTTTCGCTGCCCTCTG 60.108 55.000 0.00 0.00 0.00 3.35
2985 3497 4.576053 TGTTCCATTGCTAGTATCATGCAC 59.424 41.667 0.00 0.00 36.37 4.57
3066 3578 4.760204 GGATGTTAAGGTGCAGTTAACTGT 59.240 41.667 30.90 16.84 45.45 3.55
3122 3634 3.672767 AGAAATTTTGCTTCAGGGCAG 57.327 42.857 0.00 0.00 43.39 4.85
3159 3671 3.377485 TCGTACTACTAAGCTGAAGCCTG 59.623 47.826 0.00 0.00 43.38 4.85
3184 3696 7.224557 TGAAGGAACAAAAGTAACTTACGTACC 59.775 37.037 0.00 0.00 0.00 3.34
3215 3727 3.949113 ACCTAAGAAACAAAAGAACGGCA 59.051 39.130 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.902531 ATTATGGGATCCTACCGCCG 59.097 55.000 12.58 0.00 0.00 6.46
1 2 2.188817 AGATTATGGGATCCTACCGCC 58.811 52.381 12.58 0.00 0.00 6.13
2 3 3.132467 GGTAGATTATGGGATCCTACCGC 59.868 52.174 12.58 0.00 0.00 5.68
3 4 3.380637 CGGTAGATTATGGGATCCTACCG 59.619 52.174 23.90 23.90 41.33 4.02
4 5 3.132467 GCGGTAGATTATGGGATCCTACC 59.868 52.174 12.58 12.32 32.45 3.18
5 6 3.132467 GGCGGTAGATTATGGGATCCTAC 59.868 52.174 12.58 4.13 0.00 3.18
6 7 3.245839 TGGCGGTAGATTATGGGATCCTA 60.246 47.826 12.58 5.82 0.00 2.94
7 8 2.188817 GGCGGTAGATTATGGGATCCT 58.811 52.381 12.58 0.00 0.00 3.24
8 9 1.906574 TGGCGGTAGATTATGGGATCC 59.093 52.381 1.92 1.92 0.00 3.36
9 10 3.197766 TCATGGCGGTAGATTATGGGATC 59.802 47.826 0.00 0.00 0.00 3.36
10 11 3.055094 GTCATGGCGGTAGATTATGGGAT 60.055 47.826 0.00 0.00 0.00 3.85
11 12 2.301870 GTCATGGCGGTAGATTATGGGA 59.698 50.000 0.00 0.00 0.00 4.37
12 13 2.615493 GGTCATGGCGGTAGATTATGGG 60.615 54.545 0.00 0.00 0.00 4.00
13 14 2.615493 GGGTCATGGCGGTAGATTATGG 60.615 54.545 0.00 0.00 0.00 2.74
14 15 2.303022 AGGGTCATGGCGGTAGATTATG 59.697 50.000 0.00 0.00 0.00 1.90
15 16 2.621070 AGGGTCATGGCGGTAGATTAT 58.379 47.619 0.00 0.00 0.00 1.28
16 17 2.097110 AGGGTCATGGCGGTAGATTA 57.903 50.000 0.00 0.00 0.00 1.75
17 18 1.134098 CAAGGGTCATGGCGGTAGATT 60.134 52.381 0.00 0.00 0.00 2.40
18 19 0.469917 CAAGGGTCATGGCGGTAGAT 59.530 55.000 0.00 0.00 0.00 1.98
19 20 1.622607 CCAAGGGTCATGGCGGTAGA 61.623 60.000 0.00 0.00 0.00 2.59
20 21 1.153168 CCAAGGGTCATGGCGGTAG 60.153 63.158 0.00 0.00 0.00 3.18
21 22 2.994699 CCAAGGGTCATGGCGGTA 59.005 61.111 0.00 0.00 0.00 4.02
26 27 0.748005 CTTACCGCCAAGGGTCATGG 60.748 60.000 0.00 0.00 46.96 3.66
27 28 1.376609 GCTTACCGCCAAGGGTCATG 61.377 60.000 0.00 0.00 46.96 3.07
28 29 1.077716 GCTTACCGCCAAGGGTCAT 60.078 57.895 0.00 0.00 46.96 3.06
29 30 2.221299 AGCTTACCGCCAAGGGTCA 61.221 57.895 0.00 0.00 46.96 4.02
30 31 1.745489 CAGCTTACCGCCAAGGGTC 60.745 63.158 0.00 0.00 46.96 4.46
31 32 2.185310 CTCAGCTTACCGCCAAGGGT 62.185 60.000 0.00 0.00 46.96 4.34
32 33 1.450312 CTCAGCTTACCGCCAAGGG 60.450 63.158 0.00 0.00 46.96 3.95
34 35 1.021390 CACCTCAGCTTACCGCCAAG 61.021 60.000 0.00 0.00 40.39 3.61
35 36 1.003839 CACCTCAGCTTACCGCCAA 60.004 57.895 0.00 0.00 40.39 4.52
36 37 2.214216 ACACCTCAGCTTACCGCCA 61.214 57.895 0.00 0.00 40.39 5.69
37 38 1.741770 CACACCTCAGCTTACCGCC 60.742 63.158 0.00 0.00 40.39 6.13
38 39 2.391389 GCACACCTCAGCTTACCGC 61.391 63.158 0.00 0.00 39.57 5.68
39 40 1.016130 CAGCACACCTCAGCTTACCG 61.016 60.000 0.00 0.00 39.50 4.02
40 41 0.674895 CCAGCACACCTCAGCTTACC 60.675 60.000 0.00 0.00 39.50 2.85
41 42 0.321671 TCCAGCACACCTCAGCTTAC 59.678 55.000 0.00 0.00 39.50 2.34
42 43 0.321671 GTCCAGCACACCTCAGCTTA 59.678 55.000 0.00 0.00 39.50 3.09
43 44 1.072159 GTCCAGCACACCTCAGCTT 59.928 57.895 0.00 0.00 39.50 3.74
44 45 2.746359 GTCCAGCACACCTCAGCT 59.254 61.111 0.00 0.00 42.94 4.24
45 46 2.740055 CGTCCAGCACACCTCAGC 60.740 66.667 0.00 0.00 0.00 4.26
46 47 0.317160 TAACGTCCAGCACACCTCAG 59.683 55.000 0.00 0.00 0.00 3.35
47 48 0.317160 CTAACGTCCAGCACACCTCA 59.683 55.000 0.00 0.00 0.00 3.86
48 49 0.317479 ACTAACGTCCAGCACACCTC 59.683 55.000 0.00 0.00 0.00 3.85
49 50 0.756903 AACTAACGTCCAGCACACCT 59.243 50.000 0.00 0.00 0.00 4.00
50 51 0.865769 CAACTAACGTCCAGCACACC 59.134 55.000 0.00 0.00 0.00 4.16
51 52 1.525619 GTCAACTAACGTCCAGCACAC 59.474 52.381 0.00 0.00 0.00 3.82
52 53 1.860676 GTCAACTAACGTCCAGCACA 58.139 50.000 0.00 0.00 0.00 4.57
53 54 0.782384 CGTCAACTAACGTCCAGCAC 59.218 55.000 0.00 0.00 37.86 4.40
54 55 0.319211 CCGTCAACTAACGTCCAGCA 60.319 55.000 0.00 0.00 41.01 4.41
55 56 0.319297 ACCGTCAACTAACGTCCAGC 60.319 55.000 0.00 0.00 41.01 4.85
56 57 1.790623 CAACCGTCAACTAACGTCCAG 59.209 52.381 0.00 0.00 41.01 3.86
57 58 1.136695 ACAACCGTCAACTAACGTCCA 59.863 47.619 0.00 0.00 41.01 4.02
58 59 1.523934 CACAACCGTCAACTAACGTCC 59.476 52.381 0.00 0.00 41.01 4.79
59 60 1.523934 CCACAACCGTCAACTAACGTC 59.476 52.381 0.00 0.00 41.01 4.34
60 61 1.574134 CCACAACCGTCAACTAACGT 58.426 50.000 0.00 0.00 41.01 3.99
61 62 0.233848 GCCACAACCGTCAACTAACG 59.766 55.000 0.00 0.00 42.24 3.18
62 63 0.589708 GGCCACAACCGTCAACTAAC 59.410 55.000 0.00 0.00 0.00 2.34
63 64 3.009612 GGCCACAACCGTCAACTAA 57.990 52.632 0.00 0.00 0.00 2.24
64 65 4.783667 GGCCACAACCGTCAACTA 57.216 55.556 0.00 0.00 0.00 2.24
72 73 0.252197 ATAGGAAGACGGCCACAACC 59.748 55.000 2.24 4.11 0.00 3.77
73 74 1.653151 GATAGGAAGACGGCCACAAC 58.347 55.000 2.24 0.00 0.00 3.32
74 75 0.174845 CGATAGGAAGACGGCCACAA 59.825 55.000 2.24 0.00 0.00 3.33
75 76 1.813859 CGATAGGAAGACGGCCACA 59.186 57.895 2.24 0.00 0.00 4.17
76 77 1.591863 GCGATAGGAAGACGGCCAC 60.592 63.158 2.24 0.00 0.00 5.01
77 78 2.792947 GGCGATAGGAAGACGGCCA 61.793 63.158 2.24 0.00 44.46 5.36
78 79 2.029221 GGCGATAGGAAGACGGCC 59.971 66.667 0.00 0.00 44.46 6.13
79 80 2.354773 CGGCGATAGGAAGACGGC 60.355 66.667 0.00 0.00 46.14 5.68
80 81 1.283181 CTCGGCGATAGGAAGACGG 59.717 63.158 11.27 0.00 39.74 4.79
81 82 1.370657 GCTCGGCGATAGGAAGACG 60.371 63.158 11.27 0.00 40.84 4.18
82 83 1.007154 GGCTCGGCGATAGGAAGAC 60.007 63.158 11.27 0.00 0.00 3.01
83 84 1.152735 AGGCTCGGCGATAGGAAGA 60.153 57.895 11.27 0.00 0.00 2.87
84 85 1.175983 AGAGGCTCGGCGATAGGAAG 61.176 60.000 11.27 0.00 0.00 3.46
85 86 0.755698 AAGAGGCTCGGCGATAGGAA 60.756 55.000 11.27 0.00 0.00 3.36
86 87 1.152735 AAGAGGCTCGGCGATAGGA 60.153 57.895 11.27 0.00 0.00 2.94
87 88 1.006805 CAAGAGGCTCGGCGATAGG 60.007 63.158 11.27 0.00 0.00 2.57
88 89 0.318275 GTCAAGAGGCTCGGCGATAG 60.318 60.000 11.27 0.00 0.00 2.08
89 90 1.734137 GTCAAGAGGCTCGGCGATA 59.266 57.895 11.27 0.00 0.00 2.92
90 91 2.496817 GTCAAGAGGCTCGGCGAT 59.503 61.111 11.27 0.00 0.00 4.58
91 92 4.116328 CGTCAAGAGGCTCGGCGA 62.116 66.667 10.14 10.14 0.00 5.54
93 94 2.615262 CTACCGTCAAGAGGCTCGGC 62.615 65.000 9.22 0.00 45.76 5.54
94 95 1.433879 CTACCGTCAAGAGGCTCGG 59.566 63.158 9.22 9.51 46.98 4.63
95 96 1.313812 ACCTACCGTCAAGAGGCTCG 61.314 60.000 9.22 0.00 33.28 5.03
96 97 0.896226 AACCTACCGTCAAGAGGCTC 59.104 55.000 6.34 6.34 33.28 4.70
97 98 0.608640 CAACCTACCGTCAAGAGGCT 59.391 55.000 0.00 0.00 33.28 4.58
98 99 0.606604 TCAACCTACCGTCAAGAGGC 59.393 55.000 0.00 0.00 33.28 4.70
99 100 1.893801 AGTCAACCTACCGTCAAGAGG 59.106 52.381 0.00 0.00 36.36 3.69
100 101 2.557056 TCAGTCAACCTACCGTCAAGAG 59.443 50.000 0.00 0.00 0.00 2.85
101 102 2.589720 TCAGTCAACCTACCGTCAAGA 58.410 47.619 0.00 0.00 0.00 3.02
102 103 3.512680 GATCAGTCAACCTACCGTCAAG 58.487 50.000 0.00 0.00 0.00 3.02
103 104 2.232941 GGATCAGTCAACCTACCGTCAA 59.767 50.000 0.00 0.00 0.00 3.18
104 105 1.822990 GGATCAGTCAACCTACCGTCA 59.177 52.381 0.00 0.00 0.00 4.35
105 106 2.100989 AGGATCAGTCAACCTACCGTC 58.899 52.381 0.00 0.00 31.78 4.79
106 107 2.233305 AGGATCAGTCAACCTACCGT 57.767 50.000 0.00 0.00 31.78 4.83
107 108 3.058155 CGATAGGATCAGTCAACCTACCG 60.058 52.174 0.00 0.00 37.04 4.02
108 109 3.305471 GCGATAGGATCAGTCAACCTACC 60.305 52.174 0.00 0.00 38.79 3.18
109 110 3.305471 GGCGATAGGATCAGTCAACCTAC 60.305 52.174 0.00 0.00 38.79 3.18
110 111 2.891580 GGCGATAGGATCAGTCAACCTA 59.108 50.000 0.00 0.00 39.99 3.08
111 112 1.689273 GGCGATAGGATCAGTCAACCT 59.311 52.381 0.00 0.00 37.76 3.50
112 113 1.603172 CGGCGATAGGATCAGTCAACC 60.603 57.143 0.00 0.00 0.00 3.77
113 114 1.337071 TCGGCGATAGGATCAGTCAAC 59.663 52.381 4.99 0.00 0.00 3.18
114 115 1.609072 CTCGGCGATAGGATCAGTCAA 59.391 52.381 11.27 0.00 0.00 3.18
115 116 1.239347 CTCGGCGATAGGATCAGTCA 58.761 55.000 11.27 0.00 0.00 3.41
116 117 0.109504 GCTCGGCGATAGGATCAGTC 60.110 60.000 11.27 0.00 0.00 3.51
117 118 1.528292 GGCTCGGCGATAGGATCAGT 61.528 60.000 11.27 0.00 0.00 3.41
118 119 1.214062 GGCTCGGCGATAGGATCAG 59.786 63.158 11.27 0.00 0.00 2.90
119 120 2.276116 GGGCTCGGCGATAGGATCA 61.276 63.158 11.27 0.00 0.00 2.92
120 121 2.574399 GGGCTCGGCGATAGGATC 59.426 66.667 11.27 0.00 0.00 3.36
121 122 2.997897 GGGGCTCGGCGATAGGAT 60.998 66.667 11.27 0.00 0.00 3.24
136 137 0.322187 CTTTCGTAACCACCAGGGGG 60.322 60.000 6.02 6.02 42.91 5.40
137 138 0.322187 CCTTTCGTAACCACCAGGGG 60.322 60.000 0.00 0.00 42.91 4.79
138 139 0.322187 CCCTTTCGTAACCACCAGGG 60.322 60.000 0.00 0.00 44.81 4.45
139 140 0.399075 ACCCTTTCGTAACCACCAGG 59.601 55.000 0.00 0.00 42.21 4.45
140 141 1.071071 TGACCCTTTCGTAACCACCAG 59.929 52.381 0.00 0.00 0.00 4.00
141 142 1.071071 CTGACCCTTTCGTAACCACCA 59.929 52.381 0.00 0.00 0.00 4.17
142 143 1.345415 TCTGACCCTTTCGTAACCACC 59.655 52.381 0.00 0.00 0.00 4.61
143 144 2.825861 TCTGACCCTTTCGTAACCAC 57.174 50.000 0.00 0.00 0.00 4.16
144 145 4.360951 AAATCTGACCCTTTCGTAACCA 57.639 40.909 0.00 0.00 0.00 3.67
145 146 6.806388 TTTAAATCTGACCCTTTCGTAACC 57.194 37.500 0.00 0.00 0.00 2.85
172 173 5.770162 AGATCTGACCTCCGTTTCAATTTTT 59.230 36.000 0.00 0.00 0.00 1.94
173 174 5.316987 AGATCTGACCTCCGTTTCAATTTT 58.683 37.500 0.00 0.00 0.00 1.82
174 175 4.911390 AGATCTGACCTCCGTTTCAATTT 58.089 39.130 0.00 0.00 0.00 1.82
175 176 4.508662 GAGATCTGACCTCCGTTTCAATT 58.491 43.478 0.00 0.00 0.00 2.32
176 177 3.429547 CGAGATCTGACCTCCGTTTCAAT 60.430 47.826 0.00 0.00 0.00 2.57
177 178 2.094700 CGAGATCTGACCTCCGTTTCAA 60.095 50.000 0.00 0.00 0.00 2.69
178 179 1.472878 CGAGATCTGACCTCCGTTTCA 59.527 52.381 0.00 0.00 0.00 2.69
179 180 1.743958 TCGAGATCTGACCTCCGTTTC 59.256 52.381 0.00 0.00 0.00 2.78
180 181 1.835494 TCGAGATCTGACCTCCGTTT 58.165 50.000 0.00 0.00 0.00 3.60
181 182 1.835494 TTCGAGATCTGACCTCCGTT 58.165 50.000 0.00 0.00 0.00 4.44
182 183 2.060050 ATTCGAGATCTGACCTCCGT 57.940 50.000 0.00 0.00 0.00 4.69
183 184 3.067461 AGAAATTCGAGATCTGACCTCCG 59.933 47.826 0.00 0.00 0.00 4.63
184 185 4.664150 AGAAATTCGAGATCTGACCTCC 57.336 45.455 0.00 0.00 0.00 4.30
185 186 5.209240 CGTAGAAATTCGAGATCTGACCTC 58.791 45.833 0.00 0.00 0.00 3.85
186 187 4.498345 GCGTAGAAATTCGAGATCTGACCT 60.498 45.833 0.00 0.00 0.00 3.85
187 188 3.731717 GCGTAGAAATTCGAGATCTGACC 59.268 47.826 0.00 0.00 0.00 4.02
188 189 4.602995 AGCGTAGAAATTCGAGATCTGAC 58.397 43.478 0.00 0.00 0.00 3.51
189 190 4.902443 AGCGTAGAAATTCGAGATCTGA 57.098 40.909 0.00 0.00 0.00 3.27
190 191 7.306283 CCTTTTAGCGTAGAAATTCGAGATCTG 60.306 40.741 0.00 0.00 0.00 2.90
191 192 6.697892 CCTTTTAGCGTAGAAATTCGAGATCT 59.302 38.462 0.00 0.00 0.00 2.75
192 193 6.074249 CCCTTTTAGCGTAGAAATTCGAGATC 60.074 42.308 0.00 0.00 0.00 2.75
193 194 5.753921 CCCTTTTAGCGTAGAAATTCGAGAT 59.246 40.000 0.00 0.00 0.00 2.75
194 195 5.107133 CCCTTTTAGCGTAGAAATTCGAGA 58.893 41.667 0.00 0.00 0.00 4.04
195 196 4.868734 ACCCTTTTAGCGTAGAAATTCGAG 59.131 41.667 0.00 0.00 0.00 4.04
196 197 4.824289 ACCCTTTTAGCGTAGAAATTCGA 58.176 39.130 0.00 0.00 0.00 3.71
197 198 4.628333 TGACCCTTTTAGCGTAGAAATTCG 59.372 41.667 0.00 0.00 0.00 3.34
198 199 6.679327 ATGACCCTTTTAGCGTAGAAATTC 57.321 37.500 0.00 0.00 0.00 2.17
199 200 7.608761 TGTTATGACCCTTTTAGCGTAGAAATT 59.391 33.333 0.00 0.00 0.00 1.82
200 201 7.065443 GTGTTATGACCCTTTTAGCGTAGAAAT 59.935 37.037 0.00 0.00 0.00 2.17
201 202 6.369615 GTGTTATGACCCTTTTAGCGTAGAAA 59.630 38.462 0.00 0.00 0.00 2.52
202 203 5.870978 GTGTTATGACCCTTTTAGCGTAGAA 59.129 40.000 0.00 0.00 0.00 2.10
203 204 5.413499 GTGTTATGACCCTTTTAGCGTAGA 58.587 41.667 0.00 0.00 0.00 2.59
204 205 4.266976 CGTGTTATGACCCTTTTAGCGTAG 59.733 45.833 0.00 0.00 0.00 3.51
205 206 4.082300 TCGTGTTATGACCCTTTTAGCGTA 60.082 41.667 0.00 0.00 0.00 4.42
206 207 2.997986 CGTGTTATGACCCTTTTAGCGT 59.002 45.455 0.00 0.00 0.00 5.07
207 208 3.255725 TCGTGTTATGACCCTTTTAGCG 58.744 45.455 0.00 0.00 0.00 4.26
208 209 5.180680 AGTTTCGTGTTATGACCCTTTTAGC 59.819 40.000 0.00 0.00 0.00 3.09
209 210 6.400727 CGAGTTTCGTGTTATGACCCTTTTAG 60.401 42.308 0.00 0.00 34.72 1.85
210 211 5.406175 CGAGTTTCGTGTTATGACCCTTTTA 59.594 40.000 0.00 0.00 34.72 1.52
211 212 4.212636 CGAGTTTCGTGTTATGACCCTTTT 59.787 41.667 0.00 0.00 34.72 2.27
212 213 3.744426 CGAGTTTCGTGTTATGACCCTTT 59.256 43.478 0.00 0.00 34.72 3.11
213 214 3.323243 CGAGTTTCGTGTTATGACCCTT 58.677 45.455 0.00 0.00 34.72 3.95
214 215 2.353406 CCGAGTTTCGTGTTATGACCCT 60.353 50.000 0.00 0.00 38.40 4.34
215 216 1.997606 CCGAGTTTCGTGTTATGACCC 59.002 52.381 0.00 0.00 38.40 4.46
216 217 1.392510 GCCGAGTTTCGTGTTATGACC 59.607 52.381 0.00 0.00 38.40 4.02
217 218 1.392510 GGCCGAGTTTCGTGTTATGAC 59.607 52.381 0.00 0.00 38.40 3.06
218 219 1.001068 TGGCCGAGTTTCGTGTTATGA 59.999 47.619 0.00 0.00 38.40 2.15
219 220 1.127951 GTGGCCGAGTTTCGTGTTATG 59.872 52.381 0.00 0.00 38.40 1.90
220 221 1.270412 TGTGGCCGAGTTTCGTGTTAT 60.270 47.619 0.00 0.00 38.40 1.89
221 222 0.104487 TGTGGCCGAGTTTCGTGTTA 59.896 50.000 0.00 0.00 38.40 2.41
222 223 0.745128 TTGTGGCCGAGTTTCGTGTT 60.745 50.000 0.00 0.00 38.40 3.32
223 224 1.153329 TTGTGGCCGAGTTTCGTGT 60.153 52.632 0.00 0.00 38.40 4.49
224 225 1.278637 GTTGTGGCCGAGTTTCGTG 59.721 57.895 0.00 0.00 38.40 4.35
225 226 1.153329 TGTTGTGGCCGAGTTTCGT 60.153 52.632 0.00 0.00 38.40 3.85
226 227 1.278637 GTGTTGTGGCCGAGTTTCG 59.721 57.895 0.00 0.00 40.07 3.46
227 228 1.278637 CGTGTTGTGGCCGAGTTTC 59.721 57.895 0.00 0.00 0.00 2.78
228 229 2.184167 CCGTGTTGTGGCCGAGTTT 61.184 57.895 0.00 0.00 0.00 2.66
229 230 2.590575 CCGTGTTGTGGCCGAGTT 60.591 61.111 0.00 0.00 0.00 3.01
236 237 4.403137 CCGCATGCCGTGTTGTGG 62.403 66.667 13.15 0.23 37.19 4.17
237 238 4.403137 CCCGCATGCCGTGTTGTG 62.403 66.667 13.15 0.00 34.38 3.33
247 248 3.417224 CATCGATCGGCCCGCATG 61.417 66.667 16.41 6.55 0.00 4.06
257 258 4.891727 ACACCGGCGGCATCGATC 62.892 66.667 28.71 0.00 39.00 3.69
258 259 4.891727 GACACCGGCGGCATCGAT 62.892 66.667 28.71 1.09 39.00 3.59
274 275 1.256812 TGATCTGTCTGAAGCGGTGA 58.743 50.000 0.00 0.00 0.00 4.02
277 278 2.200067 GTGATGATCTGTCTGAAGCGG 58.800 52.381 0.00 0.00 0.00 5.52
278 279 2.200067 GGTGATGATCTGTCTGAAGCG 58.800 52.381 0.00 0.00 0.00 4.68
279 280 2.200067 CGGTGATGATCTGTCTGAAGC 58.800 52.381 0.00 0.00 0.00 3.86
324 329 2.434884 CCGTCTTCGCACAGGCAT 60.435 61.111 0.00 0.00 41.24 4.40
433 438 2.125106 GTAGCACAAGGGCGGAGG 60.125 66.667 0.00 0.00 39.27 4.30
435 440 1.302192 GTTGTAGCACAAGGGCGGA 60.302 57.895 2.52 0.00 39.00 5.54
436 441 1.599518 TGTTGTAGCACAAGGGCGG 60.600 57.895 2.52 0.00 39.00 6.13
438 443 1.001378 CAAGTGTTGTAGCACAAGGGC 60.001 52.381 1.82 0.00 39.00 5.19
451 459 3.802948 ACACTCGAGAACTCAAGTGTT 57.197 42.857 21.68 7.23 37.21 3.32
458 466 2.576406 CGTGAGAACACTCGAGAACTC 58.424 52.381 21.68 19.28 43.99 3.01
471 479 2.709125 CTTCACCGTGGCCGTGAGAA 62.709 60.000 11.18 5.60 0.00 2.87
519 527 1.300388 CACTTGGGCAAGCAACAGC 60.300 57.895 0.00 0.00 41.99 4.40
520 528 0.031178 GTCACTTGGGCAAGCAACAG 59.969 55.000 0.00 0.00 41.99 3.16
522 530 1.363807 GGTCACTTGGGCAAGCAAC 59.636 57.895 0.00 0.00 41.99 4.17
523 531 2.192861 CGGTCACTTGGGCAAGCAA 61.193 57.895 0.00 0.00 41.99 3.91
524 532 2.594303 CGGTCACTTGGGCAAGCA 60.594 61.111 0.00 0.00 41.99 3.91
525 533 4.043200 GCGGTCACTTGGGCAAGC 62.043 66.667 0.00 0.00 41.99 4.01
526 534 1.526575 AATGCGGTCACTTGGGCAAG 61.527 55.000 0.00 0.00 43.79 4.01
540 966 0.927537 TTTGTCGAGCGGATAATGCG 59.072 50.000 0.00 0.00 37.44 4.73
604 1053 1.334599 CGCCTGCGCTTTACTTTGAAA 60.335 47.619 9.73 0.00 0.00 2.69
643 1097 4.440829 GATGGGAAAGGGCCGGCA 62.441 66.667 30.85 4.70 0.00 5.69
647 1101 0.544120 TGGTTTGATGGGAAAGGGCC 60.544 55.000 0.00 0.00 0.00 5.80
649 1103 2.289631 GCTTTGGTTTGATGGGAAAGGG 60.290 50.000 0.00 0.00 0.00 3.95
652 1106 4.769345 AAAGCTTTGGTTTGATGGGAAA 57.231 36.364 11.80 0.00 31.83 3.13
676 1130 2.969262 GGTTTGATGGGACCCTCAAAAA 59.031 45.455 26.52 14.67 41.57 1.94
677 1131 2.091055 TGGTTTGATGGGACCCTCAAAA 60.091 45.455 26.52 16.02 41.57 2.44
678 1132 1.501170 TGGTTTGATGGGACCCTCAAA 59.499 47.619 23.49 23.49 38.64 2.69
679 1133 1.153539 TGGTTTGATGGGACCCTCAA 58.846 50.000 13.00 15.43 34.99 3.02
680 1134 1.153539 TTGGTTTGATGGGACCCTCA 58.846 50.000 13.00 10.16 34.99 3.86
681 1135 2.171003 CTTTGGTTTGATGGGACCCTC 58.829 52.381 13.00 7.52 34.99 4.30
682 1136 1.827245 GCTTTGGTTTGATGGGACCCT 60.827 52.381 13.00 0.00 34.99 4.34
683 1137 0.608130 GCTTTGGTTTGATGGGACCC 59.392 55.000 2.45 2.45 34.99 4.46
684 1138 1.273327 CAGCTTTGGTTTGATGGGACC 59.727 52.381 0.00 0.00 36.45 4.46
685 1139 2.029918 GTCAGCTTTGGTTTGATGGGAC 60.030 50.000 0.00 0.00 0.00 4.46
686 1140 2.238521 GTCAGCTTTGGTTTGATGGGA 58.761 47.619 0.00 0.00 0.00 4.37
687 1141 1.068333 CGTCAGCTTTGGTTTGATGGG 60.068 52.381 0.00 0.00 0.00 4.00
688 1142 1.608590 ACGTCAGCTTTGGTTTGATGG 59.391 47.619 0.00 0.00 33.26 3.51
689 1143 3.364964 GGTACGTCAGCTTTGGTTTGATG 60.365 47.826 0.00 0.00 34.74 3.07
690 1144 2.812011 GGTACGTCAGCTTTGGTTTGAT 59.188 45.455 0.00 0.00 0.00 2.57
691 1145 2.215196 GGTACGTCAGCTTTGGTTTGA 58.785 47.619 0.00 0.00 0.00 2.69
692 1146 2.681152 GGTACGTCAGCTTTGGTTTG 57.319 50.000 0.00 0.00 0.00 2.93
740 1194 0.301687 GCAATGTACATGGCGACGAG 59.698 55.000 19.25 0.00 0.00 4.18
977 1447 0.462759 CTGGTTCGGGGATCTGCTTC 60.463 60.000 0.00 0.00 0.00 3.86
979 1449 3.036429 GCTGGTTCGGGGATCTGCT 62.036 63.158 0.00 0.00 0.00 4.24
1052 1522 0.458260 GAGGAAGAGGACGAAGAGGC 59.542 60.000 0.00 0.00 0.00 4.70
1185 1655 0.039618 AAATGTCGCATCCCTTGGGT 59.960 50.000 5.51 0.00 39.25 4.51
1317 1787 1.745489 CCAGCGCCACCTAAGGAAC 60.745 63.158 2.29 0.00 0.00 3.62
1475 1945 5.912955 GTGGACTGAAATTTTAAACTGACGG 59.087 40.000 0.00 0.00 0.00 4.79
1476 1946 6.725246 AGTGGACTGAAATTTTAAACTGACG 58.275 36.000 0.00 0.00 0.00 4.35
1485 1955 9.995003 TTGCAATAATTAGTGGACTGAAATTTT 57.005 25.926 14.26 0.00 0.00 1.82
1510 2004 9.823647 ATACATTTCGTAGATCAGTGATTTCTT 57.176 29.630 7.16 0.00 35.04 2.52
1512 2006 9.249457 TCATACATTTCGTAGATCAGTGATTTC 57.751 33.333 7.16 0.00 35.04 2.17
1540 2039 9.982651 CTCCCTCTCTAATAATCGAAAATGTAA 57.017 33.333 0.00 0.00 0.00 2.41
1589 2088 0.881796 GGGTACTCCAGCTGCAAAAC 59.118 55.000 8.66 3.58 35.00 2.43
1591 2090 1.378762 GGGGTACTCCAGCTGCAAA 59.621 57.895 6.99 0.00 37.22 3.68
1849 2349 1.593296 GGCCGGACTCGTAGAACAGT 61.593 60.000 5.05 0.00 34.09 3.55
1966 2466 2.283388 AAGCCCGGGTGACTCGTA 60.283 61.111 24.63 0.00 0.00 3.43
1972 2472 2.434331 CCTTTGAAGCCCGGGTGA 59.566 61.111 24.63 0.00 0.00 4.02
2391 2901 3.859386 CACACAGCTGAAACCAGAAAAAC 59.141 43.478 23.35 0.00 33.56 2.43
2392 2902 3.675775 GCACACAGCTGAAACCAGAAAAA 60.676 43.478 23.35 0.00 41.15 1.94
2515 3025 9.476202 CCGTATGAACAATTATCTAGTGATTGA 57.524 33.333 16.61 2.35 37.28 2.57
2516 3026 9.476202 TCCGTATGAACAATTATCTAGTGATTG 57.524 33.333 11.32 11.32 39.13 2.67
2517 3027 9.698309 CTCCGTATGAACAATTATCTAGTGATT 57.302 33.333 0.00 0.00 34.32 2.57
2518 3028 8.861086 ACTCCGTATGAACAATTATCTAGTGAT 58.139 33.333 0.00 0.00 36.74 3.06
2519 3029 8.234136 ACTCCGTATGAACAATTATCTAGTGA 57.766 34.615 0.00 0.00 0.00 3.41
2520 3030 9.395707 GTACTCCGTATGAACAATTATCTAGTG 57.604 37.037 0.00 0.00 0.00 2.74
2521 3031 9.128404 TGTACTCCGTATGAACAATTATCTAGT 57.872 33.333 0.00 0.00 0.00 2.57
2522 3032 9.961265 TTGTACTCCGTATGAACAATTATCTAG 57.039 33.333 0.00 0.00 0.00 2.43
2524 3034 9.661563 TTTTGTACTCCGTATGAACAATTATCT 57.338 29.630 0.00 0.00 30.76 1.98
2525 3035 9.698617 GTTTTGTACTCCGTATGAACAATTATC 57.301 33.333 0.00 0.00 30.76 1.75
2526 3036 8.671028 GGTTTTGTACTCCGTATGAACAATTAT 58.329 33.333 0.00 0.00 30.76 1.28
2527 3037 7.660617 TGGTTTTGTACTCCGTATGAACAATTA 59.339 33.333 0.00 0.00 30.76 1.40
2528 3038 6.487331 TGGTTTTGTACTCCGTATGAACAATT 59.513 34.615 0.00 0.00 30.76 2.32
2529 3039 5.998981 TGGTTTTGTACTCCGTATGAACAAT 59.001 36.000 0.00 0.00 30.76 2.71
2530 3040 5.366460 TGGTTTTGTACTCCGTATGAACAA 58.634 37.500 0.00 0.00 0.00 2.83
2531 3041 4.958509 TGGTTTTGTACTCCGTATGAACA 58.041 39.130 0.00 0.00 0.00 3.18
2532 3042 5.334337 GGTTGGTTTTGTACTCCGTATGAAC 60.334 44.000 0.00 0.00 0.00 3.18
2533 3043 4.756135 GGTTGGTTTTGTACTCCGTATGAA 59.244 41.667 0.00 0.00 0.00 2.57
2534 3044 4.317488 GGTTGGTTTTGTACTCCGTATGA 58.683 43.478 0.00 0.00 0.00 2.15
2535 3045 3.437741 GGGTTGGTTTTGTACTCCGTATG 59.562 47.826 0.00 0.00 0.00 2.39
2536 3046 3.678289 GGGTTGGTTTTGTACTCCGTAT 58.322 45.455 0.00 0.00 0.00 3.06
2537 3047 2.547642 CGGGTTGGTTTTGTACTCCGTA 60.548 50.000 0.00 0.00 0.00 4.02
2538 3048 1.811176 CGGGTTGGTTTTGTACTCCGT 60.811 52.381 0.00 0.00 0.00 4.69
2539 3049 0.869730 CGGGTTGGTTTTGTACTCCG 59.130 55.000 0.00 0.00 0.00 4.63
2540 3050 1.202794 TCCGGGTTGGTTTTGTACTCC 60.203 52.381 0.00 0.00 39.52 3.85
2541 3051 2.259266 TCCGGGTTGGTTTTGTACTC 57.741 50.000 0.00 0.00 39.52 2.59
2542 3052 2.158579 ACATCCGGGTTGGTTTTGTACT 60.159 45.455 0.00 0.00 39.52 2.73
2543 3053 2.232399 ACATCCGGGTTGGTTTTGTAC 58.768 47.619 0.00 0.00 39.52 2.90
2544 3054 2.660670 ACATCCGGGTTGGTTTTGTA 57.339 45.000 0.00 0.00 39.52 2.41
2545 3055 2.660670 TACATCCGGGTTGGTTTTGT 57.339 45.000 0.00 0.00 39.52 2.83
2546 3056 4.202172 ACTTTTACATCCGGGTTGGTTTTG 60.202 41.667 0.00 0.50 39.52 2.44
2547 3057 3.962063 ACTTTTACATCCGGGTTGGTTTT 59.038 39.130 0.00 0.00 39.52 2.43
2548 3058 3.568443 ACTTTTACATCCGGGTTGGTTT 58.432 40.909 0.00 0.00 39.52 3.27
2549 3059 3.232720 ACTTTTACATCCGGGTTGGTT 57.767 42.857 0.00 0.00 39.52 3.67
2550 3060 2.963599 ACTTTTACATCCGGGTTGGT 57.036 45.000 0.00 0.00 39.52 3.67
2551 3061 3.418047 AGAACTTTTACATCCGGGTTGG 58.582 45.455 0.00 0.00 40.09 3.77
2552 3062 5.243207 ACTAGAACTTTTACATCCGGGTTG 58.757 41.667 0.00 2.16 0.00 3.77
2553 3063 5.494390 ACTAGAACTTTTACATCCGGGTT 57.506 39.130 0.00 0.00 0.00 4.11
2554 3064 5.128335 CCTACTAGAACTTTTACATCCGGGT 59.872 44.000 0.00 0.00 0.00 5.28
2555 3065 5.128335 ACCTACTAGAACTTTTACATCCGGG 59.872 44.000 0.00 0.00 0.00 5.73
2556 3066 6.218108 ACCTACTAGAACTTTTACATCCGG 57.782 41.667 0.00 0.00 0.00 5.14
2557 3067 8.465201 AGTAACCTACTAGAACTTTTACATCCG 58.535 37.037 0.00 0.00 37.23 4.18
2572 3082 6.884295 TGCTTTTACGGTCTAGTAACCTACTA 59.116 38.462 0.00 0.00 40.14 1.82
2573 3083 5.711976 TGCTTTTACGGTCTAGTAACCTACT 59.288 40.000 0.00 0.00 42.68 2.57
2574 3084 5.954335 TGCTTTTACGGTCTAGTAACCTAC 58.046 41.667 0.00 0.00 36.44 3.18
2575 3085 6.209391 AGTTGCTTTTACGGTCTAGTAACCTA 59.791 38.462 11.48 0.00 36.44 3.08
2576 3086 5.011431 AGTTGCTTTTACGGTCTAGTAACCT 59.989 40.000 11.48 0.00 36.44 3.50
2577 3087 5.233225 AGTTGCTTTTACGGTCTAGTAACC 58.767 41.667 11.48 0.00 36.44 2.85
2578 3088 5.347093 GGAGTTGCTTTTACGGTCTAGTAAC 59.653 44.000 8.76 8.76 36.44 2.50
2579 3089 5.010922 TGGAGTTGCTTTTACGGTCTAGTAA 59.989 40.000 0.00 0.00 35.07 2.24
2580 3090 4.523943 TGGAGTTGCTTTTACGGTCTAGTA 59.476 41.667 0.00 0.00 0.00 1.82
2581 3091 3.322828 TGGAGTTGCTTTTACGGTCTAGT 59.677 43.478 0.00 0.00 0.00 2.57
2582 3092 3.921677 TGGAGTTGCTTTTACGGTCTAG 58.078 45.455 0.00 0.00 0.00 2.43
2583 3093 4.339872 TTGGAGTTGCTTTTACGGTCTA 57.660 40.909 0.00 0.00 0.00 2.59
2584 3094 2.922740 TGGAGTTGCTTTTACGGTCT 57.077 45.000 0.00 0.00 0.00 3.85
2585 3095 3.821841 CATTGGAGTTGCTTTTACGGTC 58.178 45.455 0.00 0.00 0.00 4.79
2586 3096 2.030274 GCATTGGAGTTGCTTTTACGGT 60.030 45.455 0.00 0.00 37.14 4.83
2587 3097 2.595386 GCATTGGAGTTGCTTTTACGG 58.405 47.619 0.00 0.00 37.14 4.02
2588 3098 2.241722 CGCATTGGAGTTGCTTTTACG 58.758 47.619 0.00 0.00 37.96 3.18
2589 3099 1.985684 GCGCATTGGAGTTGCTTTTAC 59.014 47.619 0.30 0.00 37.96 2.01
2590 3100 1.067915 GGCGCATTGGAGTTGCTTTTA 60.068 47.619 10.83 0.00 37.96 1.52
2591 3101 0.319813 GGCGCATTGGAGTTGCTTTT 60.320 50.000 10.83 0.00 37.96 2.27
2592 3102 1.181098 AGGCGCATTGGAGTTGCTTT 61.181 50.000 10.83 0.00 37.96 3.51
2593 3103 0.322456 TAGGCGCATTGGAGTTGCTT 60.322 50.000 10.83 0.00 37.96 3.91
2594 3104 1.026718 GTAGGCGCATTGGAGTTGCT 61.027 55.000 10.83 0.00 37.96 3.91
2595 3105 1.429423 GTAGGCGCATTGGAGTTGC 59.571 57.895 10.83 0.00 36.74 4.17
2596 3106 1.376609 GGGTAGGCGCATTGGAGTTG 61.377 60.000 10.83 0.00 0.00 3.16
2597 3107 1.077716 GGGTAGGCGCATTGGAGTT 60.078 57.895 10.83 0.00 0.00 3.01
2598 3108 1.635817 ATGGGTAGGCGCATTGGAGT 61.636 55.000 10.83 0.00 44.43 3.85
2599 3109 1.149174 ATGGGTAGGCGCATTGGAG 59.851 57.895 10.83 0.00 44.43 3.86
2600 3110 3.330192 ATGGGTAGGCGCATTGGA 58.670 55.556 10.83 0.00 44.43 3.53
2605 3115 1.200519 AGACTAAATGGGTAGGCGCA 58.799 50.000 10.83 0.00 41.83 6.09
2606 3116 2.626743 TCTAGACTAAATGGGTAGGCGC 59.373 50.000 0.00 0.00 33.98 6.53
2607 3117 3.304525 CGTCTAGACTAAATGGGTAGGCG 60.305 52.174 20.34 0.00 33.98 5.52
2608 3118 3.552478 GCGTCTAGACTAAATGGGTAGGC 60.552 52.174 20.34 8.08 0.00 3.93
2609 3119 3.304525 CGCGTCTAGACTAAATGGGTAGG 60.305 52.174 20.34 1.85 0.00 3.18
2610 3120 3.852572 GCGCGTCTAGACTAAATGGGTAG 60.853 52.174 20.34 2.35 0.00 3.18
2611 3121 2.033801 GCGCGTCTAGACTAAATGGGTA 59.966 50.000 20.34 0.00 0.00 3.69
2612 3122 1.202382 GCGCGTCTAGACTAAATGGGT 60.202 52.381 20.34 0.00 0.00 4.51
2613 3123 1.202371 TGCGCGTCTAGACTAAATGGG 60.202 52.381 20.34 13.08 0.00 4.00
2614 3124 2.120232 CTGCGCGTCTAGACTAAATGG 58.880 52.381 20.34 5.17 0.00 3.16
2615 3125 3.066369 TCTGCGCGTCTAGACTAAATG 57.934 47.619 20.34 5.88 0.00 2.32
2616 3126 3.992260 ATCTGCGCGTCTAGACTAAAT 57.008 42.857 20.34 3.34 0.00 1.40
2617 3127 4.124970 TCTATCTGCGCGTCTAGACTAAA 58.875 43.478 20.34 3.20 0.00 1.85
2618 3128 3.725490 TCTATCTGCGCGTCTAGACTAA 58.275 45.455 20.34 2.87 0.00 2.24
2619 3129 3.382048 TCTATCTGCGCGTCTAGACTA 57.618 47.619 20.34 3.74 0.00 2.59
2620 3130 2.242047 TCTATCTGCGCGTCTAGACT 57.758 50.000 20.34 2.69 0.00 3.24
2621 3131 3.335786 TTTCTATCTGCGCGTCTAGAC 57.664 47.619 13.18 13.18 0.00 2.59
2622 3132 4.365899 TTTTTCTATCTGCGCGTCTAGA 57.634 40.909 8.43 10.15 0.00 2.43
2681 3191 7.227910 ACAAGTTTGGTACTAAATCGTCACATT 59.772 33.333 7.72 0.00 35.54 2.71
2697 3207 6.754675 GTGTAGTTGCATTTTACAAGTTTGGT 59.245 34.615 6.94 0.00 32.96 3.67
2707 3217 5.571285 TGGGTATGGTGTAGTTGCATTTTA 58.429 37.500 0.00 0.00 0.00 1.52
2719 3229 2.983898 AGGTGTAAGTTGGGTATGGTGT 59.016 45.455 0.00 0.00 0.00 4.16
2829 3340 1.623163 TTAAAGAAAACGGCAGGGGG 58.377 50.000 0.00 0.00 0.00 5.40
2834 3345 2.230266 GGGCTGATTAAAGAAAACGGCA 59.770 45.455 0.00 0.00 34.97 5.69
2835 3346 2.731027 CGGGCTGATTAAAGAAAACGGC 60.731 50.000 0.00 0.00 0.00 5.68
2836 3347 2.731027 GCGGGCTGATTAAAGAAAACGG 60.731 50.000 0.00 0.00 0.00 4.44
2838 3349 3.242518 GTGCGGGCTGATTAAAGAAAAC 58.757 45.455 0.00 0.00 0.00 2.43
2880 3392 8.383619 CGAAAGATCAACAACGAGAAATCTAAT 58.616 33.333 0.00 0.00 0.00 1.73
2881 3393 7.621426 GCGAAAGATCAACAACGAGAAATCTAA 60.621 37.037 0.00 0.00 0.00 2.10
2916 3428 0.038166 TGGGATTGACCTGCTGAACC 59.962 55.000 0.00 0.00 38.98 3.62
2971 3483 2.880890 CCAAAGGGTGCATGATACTAGC 59.119 50.000 0.00 0.00 0.00 3.42
2985 3497 3.339141 GTCTCTAGCTGAAACCAAAGGG 58.661 50.000 0.00 0.00 41.29 3.95
3066 3578 4.832823 TCACAGATCAGTCAGTGTTTCCTA 59.167 41.667 0.00 0.00 41.21 2.94
3215 3727 1.067495 GCAGCTAGTCGTCAGTCCTTT 60.067 52.381 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.