Multiple sequence alignment - TraesCS7B01G116300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G116300 chr7B 100.000 3278 0 0 1 3278 135020310 135017033 0.000000e+00 6054
1 TraesCS7B01G116300 chr7B 91.697 1927 99 18 797 2709 134492153 134494032 0.000000e+00 2615
2 TraesCS7B01G116300 chr7B 91.508 895 50 12 797 1666 134636795 134635902 0.000000e+00 1208
3 TraesCS7B01G116300 chr7B 93.889 540 29 3 1 539 592779746 592779210 0.000000e+00 811
4 TraesCS7B01G116300 chr7B 96.804 219 6 1 590 808 124235951 124235734 6.680000e-97 364
5 TraesCS7B01G116300 chr7B 91.770 243 19 1 2928 3169 135034476 135034234 1.460000e-88 337
6 TraesCS7B01G116300 chr7B 92.093 215 15 2 591 805 96584868 96584656 5.320000e-78 302
7 TraesCS7B01G116300 chr7B 96.429 84 3 0 3195 3278 134493609 134493692 4.410000e-29 139
8 TraesCS7B01G116300 chr7B 96.429 84 3 0 3195 3278 134635317 134635234 4.410000e-29 139
9 TraesCS7B01G116300 chr7B 95.238 84 4 0 3195 3278 135018036 135017953 2.050000e-27 134
10 TraesCS7B01G116300 chr7B 95.238 84 4 0 3195 3278 135035074 135034991 2.050000e-27 134
11 TraesCS7B01G116300 chr7D 91.815 1344 72 17 796 2104 169540765 169539425 0.000000e+00 1838
12 TraesCS7B01G116300 chr7D 90.812 1121 72 16 2059 3169 169497921 169496822 0.000000e+00 1471
13 TraesCS7B01G116300 chr7D 90.744 1102 64 16 2070 3169 169025730 169026795 0.000000e+00 1435
14 TraesCS7B01G116300 chr7D 89.753 566 46 2 1539 2104 169449608 169449055 0.000000e+00 713
15 TraesCS7B01G116300 chr7D 95.238 84 4 0 3195 3278 169497703 169497620 2.050000e-27 134
16 TraesCS7B01G116300 chr7A 91.949 1329 82 10 797 2104 171950141 171948817 0.000000e+00 1838
17 TraesCS7B01G116300 chr7A 91.874 1329 83 10 797 2104 171536523 171535199 0.000000e+00 1832
18 TraesCS7B01G116300 chr7A 89.689 1319 95 13 797 2104 171877054 171875766 0.000000e+00 1644
19 TraesCS7B01G116300 chr7A 89.365 1260 90 13 854 2104 171548430 171547206 0.000000e+00 1544
20 TraesCS7B01G116300 chr7A 91.113 1114 69 15 2059 3169 171946762 171945676 0.000000e+00 1482
21 TraesCS7B01G116300 chr7A 90.170 1119 71 16 2059 3170 172233917 172232831 0.000000e+00 1421
22 TraesCS7B01G116300 chr7A 91.996 1012 60 8 2059 3069 171438280 171437289 0.000000e+00 1400
23 TraesCS7B01G116300 chr7A 91.168 1019 49 13 2155 3169 171547287 171546306 0.000000e+00 1345
24 TraesCS7B01G116300 chr7A 94.048 84 5 0 3195 3278 172233702 172233619 9.550000e-26 128
25 TraesCS7B01G116300 chr7A 93.976 83 5 0 3196 3278 171535159 171535077 3.430000e-25 126
26 TraesCS7B01G116300 chrUn 90.578 1263 78 13 797 2048 342997679 342996447 0.000000e+00 1635
27 TraesCS7B01G116300 chrUn 89.049 1315 93 12 797 2104 248282190 248283460 0.000000e+00 1583
28 TraesCS7B01G116300 chrUn 89.365 1260 90 11 854 2104 340734435 340735659 0.000000e+00 1544
29 TraesCS7B01G116300 chrUn 91.113 1114 69 15 2059 3169 262506687 262507773 0.000000e+00 1482
30 TraesCS7B01G116300 chrUn 91.113 1114 69 15 2059 3169 326639272 326640358 0.000000e+00 1482
31 TraesCS7B01G116300 chrUn 92.203 1026 57 10 797 1802 262505229 262506251 0.000000e+00 1430
32 TraesCS7B01G116300 chrUn 92.199 846 48 7 2155 2999 374568662 374567834 0.000000e+00 1181
33 TraesCS7B01G116300 chrUn 92.284 661 33 9 2063 2721 218480580 218481224 0.000000e+00 922
34 TraesCS7B01G116300 chrUn 88.567 726 50 4 1382 2104 233051648 233052343 0.000000e+00 850
35 TraesCS7B01G116300 chrUn 93.976 83 5 0 3196 3278 326637482 326637564 3.430000e-25 126
36 TraesCS7B01G116300 chr6A 91.364 1019 63 12 2059 3070 124424187 124425187 0.000000e+00 1371
37 TraesCS7B01G116300 chr6A 92.606 541 31 5 1 537 286336995 286337530 0.000000e+00 769
38 TraesCS7B01G116300 chr6A 94.048 84 5 0 3195 3278 124424402 124424485 9.550000e-26 128
39 TraesCS7B01G116300 chr6D 91.982 661 35 7 2063 2721 103084322 103084966 0.000000e+00 911
40 TraesCS7B01G116300 chr3B 94.259 540 25 4 1 537 588410060 588410596 0.000000e+00 821
41 TraesCS7B01G116300 chr3B 92.976 541 32 3 1 537 501398975 501399513 0.000000e+00 784
42 TraesCS7B01G116300 chr3B 93.088 217 14 1 594 809 369092212 369091996 1.900000e-82 316
43 TraesCS7B01G116300 chr4A 93.002 543 27 4 1 542 615529302 615528770 0.000000e+00 782
44 TraesCS7B01G116300 chr6B 92.751 538 34 4 1 537 654634875 654635408 0.000000e+00 773
45 TraesCS7B01G116300 chr6B 92.407 540 35 4 1 537 688940914 688941450 0.000000e+00 765
46 TraesCS7B01G116300 chr6B 92.222 540 36 4 1 537 686820005 686819469 0.000000e+00 760
47 TraesCS7B01G116300 chr1B 92.265 543 36 4 1 540 625950797 625950258 0.000000e+00 765
48 TraesCS7B01G116300 chr5B 95.833 216 8 1 591 805 504677328 504677113 6.730000e-92 348
49 TraesCS7B01G116300 chr5B 92.130 216 11 4 591 805 660636896 660636686 1.910000e-77 300
50 TraesCS7B01G116300 chr2B 94.931 217 9 2 591 805 572307486 572307270 4.050000e-89 339
51 TraesCS7B01G116300 chr2B 94.931 217 9 2 591 806 674504476 674504261 4.050000e-89 339
52 TraesCS7B01G116300 chr4B 92.857 224 14 2 591 813 534924171 534923949 1.130000e-84 324
53 TraesCS7B01G116300 chr5A 90.698 215 18 2 593 806 504571422 504571209 5.350000e-73 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G116300 chr7B 135017033 135020310 3277 True 3094.0 6054 97.6190 1 3278 2 chr7B.!!$R5 3277
1 TraesCS7B01G116300 chr7B 134492153 134494032 1879 False 1377.0 2615 94.0630 797 3278 2 chr7B.!!$F1 2481
2 TraesCS7B01G116300 chr7B 592779210 592779746 536 True 811.0 811 93.8890 1 539 1 chr7B.!!$R3 538
3 TraesCS7B01G116300 chr7B 134635234 134636795 1561 True 673.5 1208 93.9685 797 3278 2 chr7B.!!$R4 2481
4 TraesCS7B01G116300 chr7B 135034234 135035074 840 True 235.5 337 93.5040 2928 3278 2 chr7B.!!$R6 350
5 TraesCS7B01G116300 chr7D 169539425 169540765 1340 True 1838.0 1838 91.8150 796 2104 1 chr7D.!!$R2 1308
6 TraesCS7B01G116300 chr7D 169025730 169026795 1065 False 1435.0 1435 90.7440 2070 3169 1 chr7D.!!$F1 1099
7 TraesCS7B01G116300 chr7D 169496822 169497921 1099 True 802.5 1471 93.0250 2059 3278 2 chr7D.!!$R3 1219
8 TraesCS7B01G116300 chr7D 169449055 169449608 553 True 713.0 713 89.7530 1539 2104 1 chr7D.!!$R1 565
9 TraesCS7B01G116300 chr7A 171945676 171950141 4465 True 1660.0 1838 91.5310 797 3169 2 chr7A.!!$R5 2372
10 TraesCS7B01G116300 chr7A 171875766 171877054 1288 True 1644.0 1644 89.6890 797 2104 1 chr7A.!!$R2 1307
11 TraesCS7B01G116300 chr7A 171546306 171548430 2124 True 1444.5 1544 90.2665 854 3169 2 chr7A.!!$R4 2315
12 TraesCS7B01G116300 chr7A 171437289 171438280 991 True 1400.0 1400 91.9960 2059 3069 1 chr7A.!!$R1 1010
13 TraesCS7B01G116300 chr7A 171535077 171536523 1446 True 979.0 1832 92.9250 797 3278 2 chr7A.!!$R3 2481
14 TraesCS7B01G116300 chr7A 172232831 172233917 1086 True 774.5 1421 92.1090 2059 3278 2 chr7A.!!$R6 1219
15 TraesCS7B01G116300 chrUn 342996447 342997679 1232 True 1635.0 1635 90.5780 797 2048 1 chrUn.!!$R1 1251
16 TraesCS7B01G116300 chrUn 248282190 248283460 1270 False 1583.0 1583 89.0490 797 2104 1 chrUn.!!$F3 1307
17 TraesCS7B01G116300 chrUn 340734435 340735659 1224 False 1544.0 1544 89.3650 854 2104 1 chrUn.!!$F4 1250
18 TraesCS7B01G116300 chrUn 262505229 262507773 2544 False 1456.0 1482 91.6580 797 3169 2 chrUn.!!$F5 2372
19 TraesCS7B01G116300 chrUn 374567834 374568662 828 True 1181.0 1181 92.1990 2155 2999 1 chrUn.!!$R2 844
20 TraesCS7B01G116300 chrUn 218480580 218481224 644 False 922.0 922 92.2840 2063 2721 1 chrUn.!!$F1 658
21 TraesCS7B01G116300 chrUn 233051648 233052343 695 False 850.0 850 88.5670 1382 2104 1 chrUn.!!$F2 722
22 TraesCS7B01G116300 chrUn 326637482 326640358 2876 False 804.0 1482 92.5445 2059 3278 2 chrUn.!!$F6 1219
23 TraesCS7B01G116300 chr6A 286336995 286337530 535 False 769.0 769 92.6060 1 537 1 chr6A.!!$F1 536
24 TraesCS7B01G116300 chr6A 124424187 124425187 1000 False 749.5 1371 92.7060 2059 3278 2 chr6A.!!$F2 1219
25 TraesCS7B01G116300 chr6D 103084322 103084966 644 False 911.0 911 91.9820 2063 2721 1 chr6D.!!$F1 658
26 TraesCS7B01G116300 chr3B 588410060 588410596 536 False 821.0 821 94.2590 1 537 1 chr3B.!!$F2 536
27 TraesCS7B01G116300 chr3B 501398975 501399513 538 False 784.0 784 92.9760 1 537 1 chr3B.!!$F1 536
28 TraesCS7B01G116300 chr4A 615528770 615529302 532 True 782.0 782 93.0020 1 542 1 chr4A.!!$R1 541
29 TraesCS7B01G116300 chr6B 654634875 654635408 533 False 773.0 773 92.7510 1 537 1 chr6B.!!$F1 536
30 TraesCS7B01G116300 chr6B 688940914 688941450 536 False 765.0 765 92.4070 1 537 1 chr6B.!!$F2 536
31 TraesCS7B01G116300 chr6B 686819469 686820005 536 True 760.0 760 92.2220 1 537 1 chr6B.!!$R1 536
32 TraesCS7B01G116300 chr1B 625950258 625950797 539 True 765.0 765 92.2650 1 540 1 chr1B.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 781 0.035915 GAGAAGCTGGGTGGAAGGTC 60.036 60.0 0.0 0.0 0.0 3.85 F
767 786 0.744771 GCTGGGTGGAAGGTCGATTC 60.745 60.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 4594 0.674581 CGGCATTGCACCTCTTCTCA 60.675 55.000 11.39 0.0 0.0 3.27 R
2488 4894 3.072184 ACACAGGAAACAGAGCAGAAGAT 59.928 43.478 0.00 0.0 0.0 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 193 3.181506 GGACGACAAAGAGCATGATTTCC 60.182 47.826 0.00 0.00 0.00 3.13
376 388 0.312416 TATGTGTTTTGTGCGTGCCC 59.688 50.000 0.00 0.00 0.00 5.36
377 389 2.279186 GTGTTTTGTGCGTGCCCC 60.279 61.111 0.00 0.00 0.00 5.80
408 421 2.419057 ATTTTTGCGCGCTGCTGGAA 62.419 50.000 33.29 14.36 46.63 3.53
502 521 3.615496 CGCACGGCATACTAGTTTTTAGT 59.385 43.478 0.00 0.00 0.00 2.24
539 558 1.654317 GCTGTTGGAGATGCTCTCAG 58.346 55.000 13.06 0.00 45.12 3.35
540 559 1.743091 GCTGTTGGAGATGCTCTCAGG 60.743 57.143 13.06 2.67 45.12 3.86
541 560 1.829849 CTGTTGGAGATGCTCTCAGGA 59.170 52.381 13.06 0.00 45.12 3.86
542 561 1.552337 TGTTGGAGATGCTCTCAGGAC 59.448 52.381 13.06 9.22 45.12 3.85
543 562 1.830477 GTTGGAGATGCTCTCAGGACT 59.170 52.381 13.06 0.00 45.12 3.85
544 563 1.482954 TGGAGATGCTCTCAGGACTG 58.517 55.000 13.06 0.00 45.12 3.51
545 564 1.272928 TGGAGATGCTCTCAGGACTGT 60.273 52.381 13.06 0.00 45.12 3.55
547 566 3.230134 GGAGATGCTCTCAGGACTGTAT 58.770 50.000 13.06 0.00 45.12 2.29
548 567 3.255642 GGAGATGCTCTCAGGACTGTATC 59.744 52.174 13.06 0.00 45.12 2.24
549 568 3.888323 GAGATGCTCTCAGGACTGTATCA 59.112 47.826 7.93 0.00 42.90 2.15
550 569 4.482030 AGATGCTCTCAGGACTGTATCAT 58.518 43.478 0.00 0.24 0.00 2.45
551 570 4.281435 AGATGCTCTCAGGACTGTATCATG 59.719 45.833 0.00 0.00 40.62 3.07
552 571 3.635591 TGCTCTCAGGACTGTATCATGA 58.364 45.455 0.00 0.00 45.67 3.07
554 573 3.243704 GCTCTCAGGACTGTATCATGACC 60.244 52.174 0.00 0.00 43.08 4.02
557 576 2.031870 CAGGACTGTATCATGACCGGA 58.968 52.381 9.46 0.00 41.87 5.14
558 577 2.630098 CAGGACTGTATCATGACCGGAT 59.370 50.000 9.46 0.00 41.87 4.18
559 578 3.070159 CAGGACTGTATCATGACCGGATT 59.930 47.826 9.46 0.00 41.87 3.01
560 579 3.070159 AGGACTGTATCATGACCGGATTG 59.930 47.826 9.46 2.07 0.00 2.67
561 580 3.069586 GGACTGTATCATGACCGGATTGA 59.930 47.826 9.46 8.43 0.00 2.57
563 582 5.097742 ACTGTATCATGACCGGATTGAAA 57.902 39.130 9.46 0.00 0.00 2.69
564 583 5.684704 ACTGTATCATGACCGGATTGAAAT 58.315 37.500 9.46 0.00 0.00 2.17
565 584 6.122277 ACTGTATCATGACCGGATTGAAATT 58.878 36.000 9.46 0.00 0.00 1.82
566 585 6.603201 ACTGTATCATGACCGGATTGAAATTT 59.397 34.615 9.46 0.00 0.00 1.82
567 586 7.122650 ACTGTATCATGACCGGATTGAAATTTT 59.877 33.333 9.46 0.00 0.00 1.82
568 587 7.479980 TGTATCATGACCGGATTGAAATTTTC 58.520 34.615 9.46 2.05 0.00 2.29
569 588 5.973899 TCATGACCGGATTGAAATTTTCA 57.026 34.783 9.46 7.74 38.04 2.69
570 589 5.953183 TCATGACCGGATTGAAATTTTCAG 58.047 37.500 9.46 3.40 41.38 3.02
574 593 6.810911 TGACCGGATTGAAATTTTCAGAAAA 58.189 32.000 9.46 10.80 41.38 2.29
575 594 7.441017 TGACCGGATTGAAATTTTCAGAAAAT 58.559 30.769 9.46 14.43 42.62 1.82
576 595 7.384660 TGACCGGATTGAAATTTTCAGAAAATG 59.615 33.333 19.78 8.16 40.05 2.32
577 596 7.441017 ACCGGATTGAAATTTTCAGAAAATGA 58.559 30.769 19.78 8.67 40.05 2.57
578 597 7.930865 ACCGGATTGAAATTTTCAGAAAATGAA 59.069 29.630 19.78 13.63 46.31 2.57
587 606 3.874383 TCAGAAAATGAACTGGGGACA 57.126 42.857 0.00 0.00 34.02 4.02
588 607 4.387026 TCAGAAAATGAACTGGGGACAT 57.613 40.909 0.00 0.00 35.34 3.06
590 609 5.500234 TCAGAAAATGAACTGGGGACATAG 58.500 41.667 0.00 0.00 35.34 2.23
591 610 4.096984 CAGAAAATGAACTGGGGACATAGC 59.903 45.833 0.00 0.00 41.51 2.97
592 611 2.736670 AATGAACTGGGGACATAGCC 57.263 50.000 0.00 0.00 41.51 3.93
604 623 2.755103 GGACATAGCCCAGTTCTTTTGG 59.245 50.000 0.00 0.00 35.41 3.28
605 624 2.164422 GACATAGCCCAGTTCTTTTGGC 59.836 50.000 0.00 0.00 44.35 4.52
607 626 0.608035 TAGCCCAGTTCTTTTGGCCG 60.608 55.000 0.00 0.00 45.14 6.13
608 627 1.901464 GCCCAGTTCTTTTGGCCGA 60.901 57.895 0.00 0.00 37.94 5.54
610 629 1.256812 CCCAGTTCTTTTGGCCGATT 58.743 50.000 0.00 0.00 34.26 3.34
611 630 1.202348 CCCAGTTCTTTTGGCCGATTC 59.798 52.381 0.00 0.00 34.26 2.52
612 631 2.162681 CCAGTTCTTTTGGCCGATTCT 58.837 47.619 0.00 0.00 0.00 2.40
613 632 2.558359 CCAGTTCTTTTGGCCGATTCTT 59.442 45.455 0.00 0.00 0.00 2.52
614 633 3.366374 CCAGTTCTTTTGGCCGATTCTTC 60.366 47.826 0.00 0.00 0.00 2.87
615 634 2.820197 AGTTCTTTTGGCCGATTCTTCC 59.180 45.455 0.00 0.00 0.00 3.46
616 635 2.556622 GTTCTTTTGGCCGATTCTTCCA 59.443 45.455 0.00 0.00 0.00 3.53
617 636 2.436417 TCTTTTGGCCGATTCTTCCAG 58.564 47.619 0.00 0.00 0.00 3.86
619 638 2.577606 TTTGGCCGATTCTTCCAGAA 57.422 45.000 0.00 0.00 38.78 3.02
633 652 3.827008 TCCAGAATCTTGAGAATCGGG 57.173 47.619 8.43 8.43 39.61 5.14
634 653 2.158900 TCCAGAATCTTGAGAATCGGGC 60.159 50.000 9.54 0.00 38.60 6.13
636 655 3.474600 CAGAATCTTGAGAATCGGGCAT 58.525 45.455 0.00 0.00 38.61 4.40
637 656 3.497640 CAGAATCTTGAGAATCGGGCATC 59.502 47.826 0.00 0.00 38.61 3.91
638 657 2.557920 ATCTTGAGAATCGGGCATCC 57.442 50.000 0.00 0.00 38.61 3.51
639 658 0.469917 TCTTGAGAATCGGGCATCCC 59.530 55.000 0.00 0.00 38.61 3.85
648 667 3.483869 GGGCATCCCCGAGCTTCT 61.484 66.667 0.00 0.00 42.67 2.85
649 668 2.110006 GGCATCCCCGAGCTTCTC 59.890 66.667 0.00 0.00 0.00 2.87
650 669 2.110006 GCATCCCCGAGCTTCTCC 59.890 66.667 0.00 0.00 0.00 3.71
651 670 2.825264 CATCCCCGAGCTTCTCCC 59.175 66.667 0.00 0.00 0.00 4.30
652 671 2.066393 CATCCCCGAGCTTCTCCCA 61.066 63.158 0.00 0.00 0.00 4.37
653 672 1.764054 ATCCCCGAGCTTCTCCCAG 60.764 63.158 0.00 0.00 0.00 4.45
654 673 2.243774 ATCCCCGAGCTTCTCCCAGA 62.244 60.000 0.00 0.00 0.00 3.86
655 674 1.990060 CCCCGAGCTTCTCCCAGAA 60.990 63.158 0.00 0.00 32.50 3.02
656 675 1.341156 CCCCGAGCTTCTCCCAGAAT 61.341 60.000 0.00 0.00 33.13 2.40
658 677 1.118838 CCGAGCTTCTCCCAGAATCT 58.881 55.000 0.00 0.00 33.79 2.40
660 679 2.548875 CGAGCTTCTCCCAGAATCTTG 58.451 52.381 0.00 0.00 31.51 3.02
661 680 2.167281 CGAGCTTCTCCCAGAATCTTGA 59.833 50.000 0.00 0.00 35.07 3.02
663 682 3.938334 GAGCTTCTCCCAGAATCTTGAAC 59.062 47.826 0.00 0.00 31.51 3.18
664 683 3.328931 AGCTTCTCCCAGAATCTTGAACA 59.671 43.478 0.00 0.00 33.13 3.18
665 684 3.438434 GCTTCTCCCAGAATCTTGAACAC 59.562 47.826 0.00 0.00 33.13 3.32
667 686 4.916041 TCTCCCAGAATCTTGAACACAT 57.084 40.909 0.00 0.00 0.00 3.21
668 687 6.373005 TTCTCCCAGAATCTTGAACACATA 57.627 37.500 0.00 0.00 0.00 2.29
669 688 6.566079 TCTCCCAGAATCTTGAACACATAT 57.434 37.500 0.00 0.00 0.00 1.78
670 689 6.962182 TCTCCCAGAATCTTGAACACATATT 58.038 36.000 0.00 0.00 0.00 1.28
671 690 7.405292 TCTCCCAGAATCTTGAACACATATTT 58.595 34.615 0.00 0.00 0.00 1.40
672 691 7.890127 TCTCCCAGAATCTTGAACACATATTTT 59.110 33.333 0.00 0.00 0.00 1.82
673 692 8.421249 TCCCAGAATCTTGAACACATATTTTT 57.579 30.769 0.00 0.00 0.00 1.94
703 722 9.765795 ACAATCCTAGCTAGTTATGATGTAAAC 57.234 33.333 19.31 0.00 0.00 2.01
704 723 9.764363 CAATCCTAGCTAGTTATGATGTAAACA 57.236 33.333 19.31 0.00 0.00 2.83
706 725 9.765795 ATCCTAGCTAGTTATGATGTAAACAAC 57.234 33.333 19.31 0.00 0.00 3.32
707 726 8.978472 TCCTAGCTAGTTATGATGTAAACAACT 58.022 33.333 19.31 0.00 34.10 3.16
711 730 8.978472 AGCTAGTTATGATGTAAACAACTAGGA 58.022 33.333 17.04 0.00 44.43 2.94
717 736 9.952030 TTATGATGTAAACAACTAGGATTGTCA 57.048 29.630 0.00 0.00 42.01 3.58
718 737 8.862325 ATGATGTAAACAACTAGGATTGTCAA 57.138 30.769 0.00 0.00 42.01 3.18
719 738 8.684386 TGATGTAAACAACTAGGATTGTCAAA 57.316 30.769 0.00 0.00 42.01 2.69
721 740 9.959749 GATGTAAACAACTAGGATTGTCAAAAA 57.040 29.630 0.00 0.00 42.01 1.94
742 761 2.614829 ATACGGGTTCAAGATTCCGG 57.385 50.000 0.00 0.00 45.97 5.14
743 762 0.538118 TACGGGTTCAAGATTCCGGG 59.462 55.000 0.00 0.00 45.97 5.73
744 763 1.196104 ACGGGTTCAAGATTCCGGGA 61.196 55.000 0.00 0.00 45.97 5.14
745 764 0.462047 CGGGTTCAAGATTCCGGGAG 60.462 60.000 0.00 0.00 38.93 4.30
746 765 0.909623 GGGTTCAAGATTCCGGGAGA 59.090 55.000 0.00 0.00 0.00 3.71
747 766 1.280998 GGGTTCAAGATTCCGGGAGAA 59.719 52.381 0.00 0.00 39.32 2.87
748 767 2.633488 GGTTCAAGATTCCGGGAGAAG 58.367 52.381 0.00 0.00 38.07 2.85
749 768 2.010497 GTTCAAGATTCCGGGAGAAGC 58.990 52.381 0.00 0.00 41.37 3.86
753 772 1.147153 GATTCCGGGAGAAGCTGGG 59.853 63.158 0.00 0.00 37.90 4.45
754 773 1.616628 ATTCCGGGAGAAGCTGGGT 60.617 57.895 0.00 0.00 38.07 4.51
755 774 1.915078 ATTCCGGGAGAAGCTGGGTG 61.915 60.000 0.00 0.00 38.07 4.61
756 775 4.101448 CCGGGAGAAGCTGGGTGG 62.101 72.222 0.00 0.00 0.00 4.61
757 776 3.003173 CGGGAGAAGCTGGGTGGA 61.003 66.667 0.00 0.00 0.00 4.02
758 777 2.592993 CGGGAGAAGCTGGGTGGAA 61.593 63.158 0.00 0.00 0.00 3.53
759 778 1.301293 GGGAGAAGCTGGGTGGAAG 59.699 63.158 0.00 0.00 0.00 3.46
760 779 1.301293 GGAGAAGCTGGGTGGAAGG 59.699 63.158 0.00 0.00 0.00 3.46
761 780 1.492993 GGAGAAGCTGGGTGGAAGGT 61.493 60.000 0.00 0.00 0.00 3.50
762 781 0.035915 GAGAAGCTGGGTGGAAGGTC 60.036 60.000 0.00 0.00 0.00 3.85
763 782 1.376037 GAAGCTGGGTGGAAGGTCG 60.376 63.158 0.00 0.00 0.00 4.79
764 783 1.827399 GAAGCTGGGTGGAAGGTCGA 61.827 60.000 0.00 0.00 0.00 4.20
767 786 0.744771 GCTGGGTGGAAGGTCGATTC 60.745 60.000 0.00 0.00 0.00 2.52
768 787 0.905357 CTGGGTGGAAGGTCGATTCT 59.095 55.000 0.00 0.00 0.00 2.40
769 788 0.902531 TGGGTGGAAGGTCGATTCTC 59.097 55.000 0.00 0.00 0.00 2.87
772 791 2.622436 GGTGGAAGGTCGATTCTCAAG 58.378 52.381 0.00 0.00 0.00 3.02
773 792 2.233922 GGTGGAAGGTCGATTCTCAAGA 59.766 50.000 0.00 0.00 0.00 3.02
776 795 4.568760 GTGGAAGGTCGATTCTCAAGATTC 59.431 45.833 0.00 0.00 0.00 2.52
778 797 4.808364 GGAAGGTCGATTCTCAAGATTCTG 59.192 45.833 0.00 0.00 0.00 3.02
779 798 5.394663 GGAAGGTCGATTCTCAAGATTCTGA 60.395 44.000 0.00 0.00 0.00 3.27
780 799 5.261209 AGGTCGATTCTCAAGATTCTGAG 57.739 43.478 0.00 6.74 43.62 3.35
839 859 3.564225 AGAAAAAGGAAATCTGACGCGTT 59.436 39.130 15.53 0.00 0.00 4.84
844 864 1.000145 GAAATCTGACGCGTTCTCCC 59.000 55.000 15.53 0.00 0.00 4.30
912 951 1.749258 GCAACACCTTCCGATCCCC 60.749 63.158 0.00 0.00 0.00 4.81
1366 1445 3.133141 AGAACCTGTCCTTCAAGAAGC 57.867 47.619 4.30 0.00 37.11 3.86
1756 1841 3.333804 TGTTGCACAATCGATGAGCTTA 58.666 40.909 15.21 0.00 44.82 3.09
1758 1843 4.395854 TGTTGCACAATCGATGAGCTTATT 59.604 37.500 15.21 0.00 44.82 1.40
1862 2149 2.174349 GCTTTTCGCTGACGCTGG 59.826 61.111 0.00 0.00 39.84 4.85
2021 2311 3.038417 GCCGCCGATCATCTTCCG 61.038 66.667 0.00 0.00 0.00 4.30
2077 4469 1.621072 GGCTGGAGAAGGAGAAGAGGA 60.621 57.143 0.00 0.00 0.00 3.71
2199 4594 1.064946 CGAAGAGGCGCTCGAGAAT 59.935 57.895 18.75 0.00 35.36 2.40
2407 4812 3.754188 CTTGTTCATGCAAGCTACTCC 57.246 47.619 0.00 0.00 39.26 3.85
2409 4814 2.703416 TGTTCATGCAAGCTACTCCAG 58.297 47.619 0.00 0.00 0.00 3.86
2465 4871 3.191371 GGATTTCTGAACCTTGCATTCGT 59.809 43.478 0.00 0.00 0.00 3.85
2482 4888 3.844577 TCGTTCCTGCACTAGTACTTC 57.155 47.619 0.00 0.00 0.00 3.01
2483 4889 3.418995 TCGTTCCTGCACTAGTACTTCT 58.581 45.455 0.00 0.00 0.00 2.85
2485 4891 4.082895 TCGTTCCTGCACTAGTACTTCTTC 60.083 45.833 0.00 0.00 0.00 2.87
2486 4892 4.082679 CGTTCCTGCACTAGTACTTCTTCT 60.083 45.833 0.00 0.00 0.00 2.85
2487 4893 5.404096 GTTCCTGCACTAGTACTTCTTCTC 58.596 45.833 0.00 0.00 0.00 2.87
2488 4894 4.663334 TCCTGCACTAGTACTTCTTCTCA 58.337 43.478 0.00 0.00 0.00 3.27
2544 4951 9.447040 GTTAAAACTGCTCTTACCTTTTTGTAG 57.553 33.333 0.00 0.00 0.00 2.74
2585 4992 4.648651 CATGATGCAGTTATGATCTGGGA 58.351 43.478 0.00 0.00 33.98 4.37
2695 5103 5.434408 TCATAAGTTGCAGAGCAGATTCAT 58.566 37.500 0.00 0.00 40.61 2.57
2698 5106 4.212143 AGTTGCAGAGCAGATTCATGTA 57.788 40.909 0.00 0.00 40.61 2.29
2751 5159 8.967664 TTTACAGTGTGGAGTAAACAGTTATT 57.032 30.769 5.88 0.00 35.83 1.40
2753 5161 7.958053 ACAGTGTGGAGTAAACAGTTATTAC 57.042 36.000 0.00 0.00 34.24 1.89
2755 5163 7.656137 ACAGTGTGGAGTAAACAGTTATTACAG 59.344 37.037 0.00 0.00 36.04 2.74
2757 5165 7.656137 AGTGTGGAGTAAACAGTTATTACAGTG 59.344 37.037 0.00 0.00 36.04 3.66
2759 5167 7.654520 TGTGGAGTAAACAGTTATTACAGTGTC 59.345 37.037 0.00 0.00 36.04 3.67
2760 5168 7.654520 GTGGAGTAAACAGTTATTACAGTGTCA 59.345 37.037 0.00 0.00 36.04 3.58
2761 5169 8.205512 TGGAGTAAACAGTTATTACAGTGTCAA 58.794 33.333 0.00 0.00 36.04 3.18
2762 5170 9.216117 GGAGTAAACAGTTATTACAGTGTCAAT 57.784 33.333 0.00 1.31 36.04 2.57
2769 5177 9.897744 ACAGTTATTACAGTGTCAATTTTCATG 57.102 29.630 0.00 0.00 0.00 3.07
2776 5184 9.605955 TTACAGTGTCAATTTTCATGATTTACG 57.394 29.630 0.00 0.00 0.00 3.18
2777 5185 7.083858 ACAGTGTCAATTTTCATGATTTACGG 58.916 34.615 0.00 0.00 0.00 4.02
2778 5186 6.527722 CAGTGTCAATTTTCATGATTTACGGG 59.472 38.462 0.00 0.00 0.00 5.28
2779 5187 6.208599 AGTGTCAATTTTCATGATTTACGGGT 59.791 34.615 0.00 0.00 0.00 5.28
2780 5188 6.307800 GTGTCAATTTTCATGATTTACGGGTG 59.692 38.462 0.00 0.00 0.00 4.61
2783 5191 6.207614 TCAATTTTCATGATTTACGGGTGTGA 59.792 34.615 0.00 0.00 0.00 3.58
2784 5192 6.582677 ATTTTCATGATTTACGGGTGTGAA 57.417 33.333 0.00 0.00 0.00 3.18
2785 5193 5.621197 TTTCATGATTTACGGGTGTGAAG 57.379 39.130 0.00 0.00 0.00 3.02
2786 5194 4.280436 TCATGATTTACGGGTGTGAAGT 57.720 40.909 0.00 0.00 0.00 3.01
2787 5195 5.408880 TCATGATTTACGGGTGTGAAGTA 57.591 39.130 0.00 0.00 0.00 2.24
2788 5196 5.416083 TCATGATTTACGGGTGTGAAGTAG 58.584 41.667 0.00 0.00 0.00 2.57
2789 5197 4.877378 TGATTTACGGGTGTGAAGTAGT 57.123 40.909 0.00 0.00 0.00 2.73
2790 5198 4.813027 TGATTTACGGGTGTGAAGTAGTC 58.187 43.478 0.00 0.00 0.00 2.59
2792 5200 4.877378 TTTACGGGTGTGAAGTAGTCAT 57.123 40.909 0.00 0.00 38.90 3.06
2793 5201 5.981088 TTTACGGGTGTGAAGTAGTCATA 57.019 39.130 0.00 0.00 38.90 2.15
2794 5202 6.534475 TTTACGGGTGTGAAGTAGTCATAT 57.466 37.500 0.00 0.00 38.90 1.78
2795 5203 6.534475 TTACGGGTGTGAAGTAGTCATATT 57.466 37.500 0.00 0.00 38.90 1.28
2797 5205 5.801380 ACGGGTGTGAAGTAGTCATATTTT 58.199 37.500 0.00 0.00 38.90 1.82
2800 5208 6.183360 CGGGTGTGAAGTAGTCATATTTTTCC 60.183 42.308 0.00 0.00 38.90 3.13
2803 5211 8.237267 GGTGTGAAGTAGTCATATTTTTCCTTG 58.763 37.037 0.00 0.00 38.90 3.61
2804 5212 8.999431 GTGTGAAGTAGTCATATTTTTCCTTGA 58.001 33.333 0.00 0.00 38.90 3.02
2805 5213 9.567776 TGTGAAGTAGTCATATTTTTCCTTGAA 57.432 29.630 0.00 0.00 38.90 2.69
2819 5227 8.816640 TTTTTCCTTGAAATCTAAGTGCAATC 57.183 30.769 0.00 0.00 31.34 2.67
2821 5229 6.748333 TCCTTGAAATCTAAGTGCAATCTG 57.252 37.500 0.00 0.00 0.00 2.90
2822 5230 6.240894 TCCTTGAAATCTAAGTGCAATCTGT 58.759 36.000 0.00 0.00 0.00 3.41
2823 5231 6.372659 TCCTTGAAATCTAAGTGCAATCTGTC 59.627 38.462 0.00 0.00 0.00 3.51
2825 5233 6.732531 TGAAATCTAAGTGCAATCTGTCTG 57.267 37.500 0.00 0.00 0.00 3.51
2826 5234 6.233434 TGAAATCTAAGTGCAATCTGTCTGT 58.767 36.000 0.00 0.00 0.00 3.41
2827 5235 6.369890 TGAAATCTAAGTGCAATCTGTCTGTC 59.630 38.462 0.00 0.00 0.00 3.51
2828 5236 5.674052 ATCTAAGTGCAATCTGTCTGTCT 57.326 39.130 0.00 0.00 0.00 3.41
2832 5240 3.813443 AGTGCAATCTGTCTGTCTTGTT 58.187 40.909 0.00 0.00 0.00 2.83
2833 5241 3.562973 AGTGCAATCTGTCTGTCTTGTTG 59.437 43.478 0.00 0.00 0.00 3.33
2834 5242 2.291465 TGCAATCTGTCTGTCTTGTTGC 59.709 45.455 0.00 0.00 40.45 4.17
2835 5243 2.551459 GCAATCTGTCTGTCTTGTTGCT 59.449 45.455 0.00 0.00 37.91 3.91
2836 5244 3.748048 GCAATCTGTCTGTCTTGTTGCTA 59.252 43.478 0.00 0.00 37.91 3.49
2837 5245 4.214119 GCAATCTGTCTGTCTTGTTGCTAA 59.786 41.667 0.00 0.00 37.91 3.09
2839 5247 4.672587 TCTGTCTGTCTTGTTGCTAACT 57.327 40.909 0.00 0.00 0.00 2.24
2840 5248 4.371786 TCTGTCTGTCTTGTTGCTAACTG 58.628 43.478 0.00 0.00 0.00 3.16
2845 5253 6.318648 TGTCTGTCTTGTTGCTAACTGAATTT 59.681 34.615 0.00 0.00 0.00 1.82
2847 5255 7.798982 GTCTGTCTTGTTGCTAACTGAATTTAC 59.201 37.037 0.00 0.00 0.00 2.01
2848 5256 7.497579 TCTGTCTTGTTGCTAACTGAATTTACA 59.502 33.333 0.00 0.00 0.00 2.41
2849 5257 7.639039 TGTCTTGTTGCTAACTGAATTTACAG 58.361 34.615 0.00 0.00 42.78 2.74
2864 5272 9.522804 CTGAATTTACAGTATCTAAGTGGTCTC 57.477 37.037 0.00 0.00 33.73 3.36
2865 5273 8.475639 TGAATTTACAGTATCTAAGTGGTCTCC 58.524 37.037 0.00 0.00 32.29 3.71
2867 5275 7.786046 TTTACAGTATCTAAGTGGTCTCCAA 57.214 36.000 0.00 0.00 34.18 3.53
2870 5278 7.259088 ACAGTATCTAAGTGGTCTCCAAATT 57.741 36.000 0.00 0.00 34.18 1.82
2872 5280 7.181125 ACAGTATCTAAGTGGTCTCCAAATTCT 59.819 37.037 0.00 0.00 34.18 2.40
2873 5281 7.493971 CAGTATCTAAGTGGTCTCCAAATTCTG 59.506 40.741 0.00 0.00 34.18 3.02
2874 5282 4.579869 TCTAAGTGGTCTCCAAATTCTGC 58.420 43.478 0.00 0.00 34.18 4.26
2875 5283 2.957402 AGTGGTCTCCAAATTCTGCA 57.043 45.000 0.00 0.00 34.18 4.41
2876 5284 2.787994 AGTGGTCTCCAAATTCTGCAG 58.212 47.619 7.63 7.63 34.18 4.41
2877 5285 2.107204 AGTGGTCTCCAAATTCTGCAGT 59.893 45.455 14.67 0.00 34.18 4.40
2879 5287 4.018960 AGTGGTCTCCAAATTCTGCAGTAT 60.019 41.667 14.67 6.84 34.18 2.12
2880 5288 4.702131 GTGGTCTCCAAATTCTGCAGTATT 59.298 41.667 14.67 13.39 34.18 1.89
2881 5289 5.183904 GTGGTCTCCAAATTCTGCAGTATTT 59.816 40.000 21.56 21.56 34.18 1.40
2882 5290 6.374333 GTGGTCTCCAAATTCTGCAGTATTTA 59.626 38.462 25.19 13.72 34.18 1.40
2884 5292 7.067372 TGGTCTCCAAATTCTGCAGTATTTATG 59.933 37.037 25.19 19.83 0.00 1.90
2887 5295 8.677300 TCTCCAAATTCTGCAGTATTTATGTTC 58.323 33.333 25.19 0.00 0.00 3.18
2891 5299 9.791820 CAAATTCTGCAGTATTTATGTTCATGA 57.208 29.630 25.19 0.00 0.00 3.07
2892 5300 9.793252 AAATTCTGCAGTATTTATGTTCATGAC 57.207 29.630 24.66 0.00 0.00 3.06
2893 5301 8.743085 ATTCTGCAGTATTTATGTTCATGACT 57.257 30.769 14.67 0.00 0.00 3.41
2894 5302 8.565896 TTCTGCAGTATTTATGTTCATGACTT 57.434 30.769 14.67 0.00 0.00 3.01
2895 5303 9.665719 TTCTGCAGTATTTATGTTCATGACTTA 57.334 29.630 14.67 0.00 0.00 2.24
2896 5304 9.098355 TCTGCAGTATTTATGTTCATGACTTAC 57.902 33.333 14.67 0.00 0.00 2.34
2897 5305 9.102757 CTGCAGTATTTATGTTCATGACTTACT 57.897 33.333 5.25 0.00 0.00 2.24
2898 5306 8.882736 TGCAGTATTTATGTTCATGACTTACTG 58.117 33.333 0.00 14.96 0.00 2.74
2899 5307 9.098355 GCAGTATTTATGTTCATGACTTACTGA 57.902 33.333 19.23 0.00 0.00 3.41
2910 5318 8.436200 GTTCATGACTTACTGAACTATGTTGTC 58.564 37.037 0.00 0.00 44.94 3.18
2912 5320 8.367911 TCATGACTTACTGAACTATGTTGTCTT 58.632 33.333 0.00 0.00 0.00 3.01
2915 5323 9.391006 TGACTTACTGAACTATGTTGTCTTTTT 57.609 29.630 0.00 0.00 0.00 1.94
2999 5418 9.170734 TCCTTAATTTTCTGTCATCTCTGAATG 57.829 33.333 0.00 0.00 31.85 2.67
3095 5514 8.608185 AACCCTCCAATGTTATATGTTTTGAT 57.392 30.769 0.00 0.00 0.00 2.57
3150 5569 5.370679 TCTCAAACAAGTACCCAGGTTTAC 58.629 41.667 0.00 0.00 32.62 2.01
3170 5589 8.726988 GGTTTACAAAGATGTAGTGAGCATTAA 58.273 33.333 0.00 0.00 42.72 1.40
3174 5593 7.688372 ACAAAGATGTAGTGAGCATTAATTCG 58.312 34.615 0.00 0.00 38.24 3.34
3175 5594 7.334421 ACAAAGATGTAGTGAGCATTAATTCGT 59.666 33.333 0.00 0.00 38.24 3.85
3176 5595 7.470289 AAGATGTAGTGAGCATTAATTCGTC 57.530 36.000 0.00 0.00 0.00 4.20
3177 5596 5.986135 AGATGTAGTGAGCATTAATTCGTCC 59.014 40.000 0.00 0.00 0.00 4.79
3178 5597 5.339008 TGTAGTGAGCATTAATTCGTCCT 57.661 39.130 0.00 0.00 0.00 3.85
3179 5598 5.730550 TGTAGTGAGCATTAATTCGTCCTT 58.269 37.500 0.00 0.00 0.00 3.36
3180 5599 6.170506 TGTAGTGAGCATTAATTCGTCCTTT 58.829 36.000 0.00 0.00 0.00 3.11
3181 5600 5.803020 AGTGAGCATTAATTCGTCCTTTC 57.197 39.130 0.00 0.00 0.00 2.62
3182 5601 5.491982 AGTGAGCATTAATTCGTCCTTTCT 58.508 37.500 0.00 0.00 0.00 2.52
3183 5602 5.352569 AGTGAGCATTAATTCGTCCTTTCTG 59.647 40.000 0.00 0.00 0.00 3.02
3184 5603 5.351465 GTGAGCATTAATTCGTCCTTTCTGA 59.649 40.000 0.00 0.00 0.00 3.27
3185 5604 5.937540 TGAGCATTAATTCGTCCTTTCTGAA 59.062 36.000 0.00 0.00 0.00 3.02
3186 5605 6.429692 TGAGCATTAATTCGTCCTTTCTGAAA 59.570 34.615 2.44 2.44 0.00 2.69
3187 5606 7.121168 TGAGCATTAATTCGTCCTTTCTGAAAT 59.879 33.333 2.88 0.00 0.00 2.17
3188 5607 7.475840 AGCATTAATTCGTCCTTTCTGAAATC 58.524 34.615 2.88 0.00 0.00 2.17
3189 5608 6.693113 GCATTAATTCGTCCTTTCTGAAATCC 59.307 38.462 2.88 0.00 0.00 3.01
3190 5609 6.753107 TTAATTCGTCCTTTCTGAAATCCC 57.247 37.500 2.88 0.00 0.00 3.85
3191 5610 4.576330 ATTCGTCCTTTCTGAAATCCCT 57.424 40.909 2.88 0.00 0.00 4.20
3192 5611 4.367039 TTCGTCCTTTCTGAAATCCCTT 57.633 40.909 2.88 0.00 0.00 3.95
3193 5612 4.367039 TCGTCCTTTCTGAAATCCCTTT 57.633 40.909 2.88 0.00 0.00 3.11
3194 5613 4.725490 TCGTCCTTTCTGAAATCCCTTTT 58.275 39.130 2.88 0.00 0.00 2.27
3195 5614 5.137551 TCGTCCTTTCTGAAATCCCTTTTT 58.862 37.500 2.88 0.00 0.00 1.94
3196 5615 6.300703 TCGTCCTTTCTGAAATCCCTTTTTA 58.699 36.000 2.88 0.00 0.00 1.52
3197 5616 6.773685 TCGTCCTTTCTGAAATCCCTTTTTAA 59.226 34.615 2.88 0.00 0.00 1.52
3198 5617 7.285858 TCGTCCTTTCTGAAATCCCTTTTTAAA 59.714 33.333 2.88 0.00 0.00 1.52
3199 5618 8.088365 CGTCCTTTCTGAAATCCCTTTTTAAAT 58.912 33.333 2.88 0.00 0.00 1.40
3200 5619 9.424319 GTCCTTTCTGAAATCCCTTTTTAAATC 57.576 33.333 2.88 0.00 0.00 2.17
3201 5620 8.593679 TCCTTTCTGAAATCCCTTTTTAAATCC 58.406 33.333 2.88 0.00 0.00 3.01
3202 5621 7.545615 CCTTTCTGAAATCCCTTTTTAAATCCG 59.454 37.037 2.88 0.00 0.00 4.18
3203 5622 7.768807 TTCTGAAATCCCTTTTTAAATCCGA 57.231 32.000 0.00 0.00 0.00 4.55
3204 5623 7.954666 TCTGAAATCCCTTTTTAAATCCGAT 57.045 32.000 0.00 0.00 0.00 4.18
3205 5624 7.771183 TCTGAAATCCCTTTTTAAATCCGATG 58.229 34.615 0.00 0.00 0.00 3.84
3206 5625 6.337356 TGAAATCCCTTTTTAAATCCGATGC 58.663 36.000 0.00 0.00 0.00 3.91
3207 5626 6.154363 TGAAATCCCTTTTTAAATCCGATGCT 59.846 34.615 0.00 0.00 0.00 3.79
3208 5627 4.981806 TCCCTTTTTAAATCCGATGCTG 57.018 40.909 0.00 0.00 0.00 4.41
3209 5628 4.594970 TCCCTTTTTAAATCCGATGCTGA 58.405 39.130 0.00 0.00 0.00 4.26
3210 5629 5.013547 TCCCTTTTTAAATCCGATGCTGAA 58.986 37.500 0.00 0.00 0.00 3.02
3211 5630 5.125417 TCCCTTTTTAAATCCGATGCTGAAG 59.875 40.000 0.00 0.00 0.00 3.02
3212 5631 5.105756 CCCTTTTTAAATCCGATGCTGAAGT 60.106 40.000 0.00 0.00 0.00 3.01
3213 5632 6.389906 CCTTTTTAAATCCGATGCTGAAGTT 58.610 36.000 0.00 0.00 0.00 2.66
3214 5633 6.528072 CCTTTTTAAATCCGATGCTGAAGTTC 59.472 38.462 0.00 0.00 0.00 3.01
3215 5634 6.817765 TTTTAAATCCGATGCTGAAGTTCT 57.182 33.333 4.17 0.00 0.00 3.01
3216 5635 6.817765 TTTAAATCCGATGCTGAAGTTCTT 57.182 33.333 4.17 0.00 0.00 2.52
3217 5636 6.817765 TTAAATCCGATGCTGAAGTTCTTT 57.182 33.333 4.17 0.00 0.00 2.52
3218 5637 5.712152 AAATCCGATGCTGAAGTTCTTTT 57.288 34.783 4.17 0.00 0.00 2.27
3219 5638 4.954092 ATCCGATGCTGAAGTTCTTTTC 57.046 40.909 4.17 0.00 0.00 2.29
3220 5639 3.738982 TCCGATGCTGAAGTTCTTTTCA 58.261 40.909 4.17 0.00 35.83 2.69
3221 5640 4.326826 TCCGATGCTGAAGTTCTTTTCAT 58.673 39.130 4.17 2.49 36.55 2.57
3222 5641 5.487433 TCCGATGCTGAAGTTCTTTTCATA 58.513 37.500 4.17 0.00 36.55 2.15
3223 5642 5.582269 TCCGATGCTGAAGTTCTTTTCATAG 59.418 40.000 4.17 3.28 36.55 2.23
3224 5643 5.352569 CCGATGCTGAAGTTCTTTTCATAGT 59.647 40.000 4.17 0.00 36.55 2.12
3225 5644 6.246449 CGATGCTGAAGTTCTTTTCATAGTG 58.754 40.000 4.17 0.00 36.55 2.74
3226 5645 6.128445 CGATGCTGAAGTTCTTTTCATAGTGT 60.128 38.462 4.17 0.00 36.55 3.55
3227 5646 7.063426 CGATGCTGAAGTTCTTTTCATAGTGTA 59.937 37.037 4.17 0.00 36.55 2.90
3228 5647 8.798859 ATGCTGAAGTTCTTTTCATAGTGTAT 57.201 30.769 4.17 0.00 36.55 2.29
3229 5648 9.890629 ATGCTGAAGTTCTTTTCATAGTGTATA 57.109 29.630 4.17 0.00 36.55 1.47
3230 5649 9.719355 TGCTGAAGTTCTTTTCATAGTGTATAA 57.281 29.630 4.17 0.00 36.55 0.98
3254 5673 4.881019 GGATACTCACTGGCTGATGTAT 57.119 45.455 0.00 3.84 31.34 2.29
3255 5674 5.220710 GGATACTCACTGGCTGATGTATT 57.779 43.478 0.00 0.00 30.01 1.89
3256 5675 6.346477 GGATACTCACTGGCTGATGTATTA 57.654 41.667 0.00 0.00 30.01 0.98
3257 5676 6.393990 GGATACTCACTGGCTGATGTATTAG 58.606 44.000 0.00 0.00 30.01 1.73
3258 5677 6.015010 GGATACTCACTGGCTGATGTATTAGT 60.015 42.308 0.00 0.00 30.01 2.24
3259 5678 5.683876 ACTCACTGGCTGATGTATTAGTT 57.316 39.130 0.00 0.00 0.00 2.24
3260 5679 5.665459 ACTCACTGGCTGATGTATTAGTTC 58.335 41.667 0.00 0.00 0.00 3.01
3261 5680 4.682787 TCACTGGCTGATGTATTAGTTCG 58.317 43.478 0.00 0.00 0.00 3.95
3262 5681 4.159693 TCACTGGCTGATGTATTAGTTCGT 59.840 41.667 0.00 0.00 0.00 3.85
3263 5682 4.504461 CACTGGCTGATGTATTAGTTCGTC 59.496 45.833 0.00 0.00 0.00 4.20
3264 5683 4.051922 CTGGCTGATGTATTAGTTCGTCC 58.948 47.826 0.00 0.00 0.00 4.79
3265 5684 3.449377 TGGCTGATGTATTAGTTCGTCCA 59.551 43.478 0.00 0.00 0.00 4.02
3266 5685 4.100963 TGGCTGATGTATTAGTTCGTCCAT 59.899 41.667 0.00 0.00 0.00 3.41
3267 5686 4.449068 GGCTGATGTATTAGTTCGTCCATG 59.551 45.833 0.00 0.00 0.00 3.66
3268 5687 5.050490 GCTGATGTATTAGTTCGTCCATGT 58.950 41.667 0.00 0.00 0.00 3.21
3269 5688 6.213677 GCTGATGTATTAGTTCGTCCATGTA 58.786 40.000 0.00 0.00 0.00 2.29
3270 5689 6.144080 GCTGATGTATTAGTTCGTCCATGTAC 59.856 42.308 0.00 0.00 0.00 2.90
3271 5690 6.203647 TGATGTATTAGTTCGTCCATGTACG 58.796 40.000 4.18 4.18 44.19 3.67
3277 5696 1.357690 TCGTCCATGTACGATCGCC 59.642 57.895 16.60 6.74 46.29 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 193 2.780361 ACAATACAATGTCGAACGCG 57.220 45.000 3.53 3.53 39.35 6.01
483 502 3.615496 CGCACTAAAAACTAGTATGCCGT 59.385 43.478 0.00 0.00 0.00 5.68
539 558 3.069586 TCAATCCGGTCATGATACAGTCC 59.930 47.826 0.00 0.00 0.00 3.85
540 559 4.322080 TCAATCCGGTCATGATACAGTC 57.678 45.455 0.00 0.00 0.00 3.51
541 560 4.753516 TTCAATCCGGTCATGATACAGT 57.246 40.909 0.00 0.00 0.00 3.55
542 561 6.624352 AATTTCAATCCGGTCATGATACAG 57.376 37.500 0.00 0.00 0.00 2.74
543 562 7.121907 TGAAAATTTCAATCCGGTCATGATACA 59.878 33.333 5.87 0.00 36.59 2.29
544 563 7.479980 TGAAAATTTCAATCCGGTCATGATAC 58.520 34.615 5.87 0.00 36.59 2.24
545 564 7.555914 TCTGAAAATTTCAATCCGGTCATGATA 59.444 33.333 9.85 0.48 39.58 2.15
547 566 5.709631 TCTGAAAATTTCAATCCGGTCATGA 59.290 36.000 9.85 1.52 39.58 3.07
548 567 5.953183 TCTGAAAATTTCAATCCGGTCATG 58.047 37.500 9.85 0.00 39.58 3.07
549 568 6.588719 TTCTGAAAATTTCAATCCGGTCAT 57.411 33.333 9.85 0.00 39.58 3.06
550 569 6.398234 TTTCTGAAAATTTCAATCCGGTCA 57.602 33.333 9.85 0.00 39.58 4.02
551 570 7.598493 TCATTTTCTGAAAATTTCAATCCGGTC 59.402 33.333 22.21 0.00 38.97 4.79
552 571 7.441017 TCATTTTCTGAAAATTTCAATCCGGT 58.559 30.769 22.21 0.00 38.97 5.28
554 573 8.981647 AGTTCATTTTCTGAAAATTTCAATCCG 58.018 29.630 22.21 11.03 45.27 4.18
557 576 9.059260 CCCAGTTCATTTTCTGAAAATTTCAAT 57.941 29.630 22.21 8.61 45.27 2.57
558 577 7.498570 CCCCAGTTCATTTTCTGAAAATTTCAA 59.501 33.333 22.21 13.83 45.27 2.69
559 578 6.991531 CCCCAGTTCATTTTCTGAAAATTTCA 59.008 34.615 22.21 8.25 45.27 2.69
560 579 7.171508 GTCCCCAGTTCATTTTCTGAAAATTTC 59.828 37.037 22.21 15.62 45.27 2.17
561 580 6.992123 GTCCCCAGTTCATTTTCTGAAAATTT 59.008 34.615 22.21 4.61 45.27 1.82
563 582 5.602145 TGTCCCCAGTTCATTTTCTGAAAAT 59.398 36.000 19.79 19.79 45.27 1.82
564 583 4.959210 TGTCCCCAGTTCATTTTCTGAAAA 59.041 37.500 17.04 17.04 45.27 2.29
565 584 4.541705 TGTCCCCAGTTCATTTTCTGAAA 58.458 39.130 0.00 0.00 45.27 2.69
566 585 4.177537 TGTCCCCAGTTCATTTTCTGAA 57.822 40.909 0.00 0.00 41.61 3.02
567 586 3.874383 TGTCCCCAGTTCATTTTCTGA 57.126 42.857 0.00 0.00 34.02 3.27
568 587 4.096984 GCTATGTCCCCAGTTCATTTTCTG 59.903 45.833 0.00 0.00 0.00 3.02
569 588 4.273318 GCTATGTCCCCAGTTCATTTTCT 58.727 43.478 0.00 0.00 0.00 2.52
570 589 3.381590 GGCTATGTCCCCAGTTCATTTTC 59.618 47.826 0.00 0.00 0.00 2.29
574 593 0.846693 GGGCTATGTCCCCAGTTCAT 59.153 55.000 0.00 0.00 42.36 2.57
575 594 2.307153 GGGCTATGTCCCCAGTTCA 58.693 57.895 0.00 0.00 42.36 3.18
581 600 0.919710 AAGAACTGGGCTATGTCCCC 59.080 55.000 2.11 0.00 45.97 4.81
582 601 2.755103 CAAAAGAACTGGGCTATGTCCC 59.245 50.000 0.00 0.00 46.73 4.46
584 603 2.164422 GCCAAAAGAACTGGGCTATGTC 59.836 50.000 0.00 0.00 43.09 3.06
585 604 2.171003 GCCAAAAGAACTGGGCTATGT 58.829 47.619 0.00 0.00 43.09 2.29
586 605 2.947448 GCCAAAAGAACTGGGCTATG 57.053 50.000 0.00 0.00 43.09 2.23
591 610 1.202348 GAATCGGCCAAAAGAACTGGG 59.798 52.381 2.24 0.00 34.25 4.45
592 611 2.162681 AGAATCGGCCAAAAGAACTGG 58.837 47.619 2.24 0.00 36.99 4.00
593 612 3.366374 GGAAGAATCGGCCAAAAGAACTG 60.366 47.826 2.24 0.00 0.00 3.16
594 613 2.820197 GGAAGAATCGGCCAAAAGAACT 59.180 45.455 2.24 0.00 0.00 3.01
595 614 2.556622 TGGAAGAATCGGCCAAAAGAAC 59.443 45.455 2.24 0.00 0.00 3.01
596 615 2.819608 CTGGAAGAATCGGCCAAAAGAA 59.180 45.455 2.24 0.00 34.07 2.52
598 617 2.436417 TCTGGAAGAATCGGCCAAAAG 58.564 47.619 2.24 0.00 42.31 2.27
599 618 2.577606 TCTGGAAGAATCGGCCAAAA 57.422 45.000 2.24 0.00 42.31 2.44
610 629 4.141846 CCCGATTCTCAAGATTCTGGAAGA 60.142 45.833 6.55 0.00 44.68 2.87
611 630 4.125703 CCCGATTCTCAAGATTCTGGAAG 58.874 47.826 6.55 0.00 33.47 3.46
612 631 3.682718 GCCCGATTCTCAAGATTCTGGAA 60.683 47.826 13.37 0.00 33.47 3.53
613 632 2.158900 GCCCGATTCTCAAGATTCTGGA 60.159 50.000 13.37 0.00 33.47 3.86
614 633 2.216898 GCCCGATTCTCAAGATTCTGG 58.783 52.381 7.58 7.58 34.23 3.86
615 634 2.910199 TGCCCGATTCTCAAGATTCTG 58.090 47.619 0.00 0.00 0.00 3.02
616 635 3.495806 GGATGCCCGATTCTCAAGATTCT 60.496 47.826 0.00 0.00 0.00 2.40
617 636 2.810852 GGATGCCCGATTCTCAAGATTC 59.189 50.000 0.00 0.00 0.00 2.52
619 638 1.072965 GGGATGCCCGATTCTCAAGAT 59.927 52.381 0.00 0.00 32.13 2.40
621 640 0.536006 GGGGATGCCCGATTCTCAAG 60.536 60.000 6.51 0.00 46.66 3.02
622 641 1.531748 GGGGATGCCCGATTCTCAA 59.468 57.895 6.51 0.00 46.66 3.02
631 650 3.468326 GAGAAGCTCGGGGATGCCC 62.468 68.421 13.41 13.41 44.51 5.36
633 652 2.110006 GGAGAAGCTCGGGGATGC 59.890 66.667 0.00 0.00 0.00 3.91
634 653 2.037620 CTGGGAGAAGCTCGGGGATG 62.038 65.000 0.00 0.00 0.00 3.51
636 655 2.364317 CTGGGAGAAGCTCGGGGA 60.364 66.667 0.00 0.00 0.00 4.81
637 656 1.341156 ATTCTGGGAGAAGCTCGGGG 61.341 60.000 0.00 0.00 37.69 5.73
638 657 0.105778 GATTCTGGGAGAAGCTCGGG 59.894 60.000 0.00 0.00 37.62 5.14
639 658 1.118838 AGATTCTGGGAGAAGCTCGG 58.881 55.000 0.00 0.00 46.92 4.63
641 660 3.902881 TCAAGATTCTGGGAGAAGCTC 57.097 47.619 4.67 0.00 46.92 4.09
643 662 3.438434 GTGTTCAAGATTCTGGGAGAAGC 59.562 47.826 0.00 0.00 40.68 3.86
644 663 4.645535 TGTGTTCAAGATTCTGGGAGAAG 58.354 43.478 0.00 0.00 37.69 2.85
645 664 4.705110 TGTGTTCAAGATTCTGGGAGAA 57.295 40.909 0.00 0.00 38.78 2.87
646 665 4.916041 ATGTGTTCAAGATTCTGGGAGA 57.084 40.909 0.00 0.00 0.00 3.71
647 666 7.636150 AAATATGTGTTCAAGATTCTGGGAG 57.364 36.000 0.00 0.00 0.00 4.30
648 667 8.421249 AAAAATATGTGTTCAAGATTCTGGGA 57.579 30.769 0.00 0.00 0.00 4.37
677 696 9.765795 GTTTACATCATAACTAGCTAGGATTGT 57.234 33.333 24.35 18.37 0.00 2.71
678 697 9.764363 TGTTTACATCATAACTAGCTAGGATTG 57.236 33.333 24.35 16.78 0.00 2.67
680 699 9.765795 GTTGTTTACATCATAACTAGCTAGGAT 57.234 33.333 24.35 13.89 0.00 3.24
681 700 8.978472 AGTTGTTTACATCATAACTAGCTAGGA 58.022 33.333 24.35 12.22 30.45 2.94
685 704 8.978472 TCCTAGTTGTTTACATCATAACTAGCT 58.022 33.333 13.98 0.00 44.56 3.32
686 705 9.765795 ATCCTAGTTGTTTACATCATAACTAGC 57.234 33.333 13.98 0.00 44.56 3.42
689 708 9.959721 ACAATCCTAGTTGTTTACATCATAACT 57.040 29.630 0.00 0.00 39.15 2.24
691 710 9.952030 TGACAATCCTAGTTGTTTACATCATAA 57.048 29.630 0.72 0.00 42.08 1.90
692 711 9.952030 TTGACAATCCTAGTTGTTTACATCATA 57.048 29.630 0.72 0.00 42.08 2.15
693 712 8.862325 TTGACAATCCTAGTTGTTTACATCAT 57.138 30.769 0.72 0.00 42.08 2.45
694 713 8.684386 TTTGACAATCCTAGTTGTTTACATCA 57.316 30.769 0.72 0.00 42.08 3.07
695 714 9.959749 TTTTTGACAATCCTAGTTGTTTACATC 57.040 29.630 0.72 0.00 42.08 3.06
719 738 4.157105 CCGGAATCTTGAACCCGTATTTTT 59.843 41.667 0.00 0.00 40.30 1.94
721 740 3.275999 CCGGAATCTTGAACCCGTATTT 58.724 45.455 0.00 0.00 40.30 1.40
724 743 0.538118 CCCGGAATCTTGAACCCGTA 59.462 55.000 0.73 0.00 40.30 4.02
726 745 0.462047 CTCCCGGAATCTTGAACCCG 60.462 60.000 0.73 0.00 41.47 5.28
727 746 0.909623 TCTCCCGGAATCTTGAACCC 59.090 55.000 0.73 0.00 0.00 4.11
728 747 2.633488 CTTCTCCCGGAATCTTGAACC 58.367 52.381 0.73 0.00 33.01 3.62
731 750 1.208052 CAGCTTCTCCCGGAATCTTGA 59.792 52.381 0.73 0.00 33.01 3.02
735 754 1.147153 CCCAGCTTCTCCCGGAATC 59.853 63.158 0.73 0.00 33.01 2.52
736 755 1.616628 ACCCAGCTTCTCCCGGAAT 60.617 57.895 0.73 0.00 33.01 3.01
737 756 2.203938 ACCCAGCTTCTCCCGGAA 60.204 61.111 0.73 0.00 0.00 4.30
738 757 3.003173 CACCCAGCTTCTCCCGGA 61.003 66.667 0.73 0.00 0.00 5.14
739 758 4.101448 CCACCCAGCTTCTCCCGG 62.101 72.222 0.00 0.00 0.00 5.73
740 759 2.527951 CTTCCACCCAGCTTCTCCCG 62.528 65.000 0.00 0.00 0.00 5.14
742 761 1.301293 CCTTCCACCCAGCTTCTCC 59.699 63.158 0.00 0.00 0.00 3.71
743 762 0.035915 GACCTTCCACCCAGCTTCTC 60.036 60.000 0.00 0.00 0.00 2.87
744 763 1.831652 CGACCTTCCACCCAGCTTCT 61.832 60.000 0.00 0.00 0.00 2.85
745 764 1.376037 CGACCTTCCACCCAGCTTC 60.376 63.158 0.00 0.00 0.00 3.86
746 765 1.201429 ATCGACCTTCCACCCAGCTT 61.201 55.000 0.00 0.00 0.00 3.74
747 766 1.201429 AATCGACCTTCCACCCAGCT 61.201 55.000 0.00 0.00 0.00 4.24
748 767 0.744771 GAATCGACCTTCCACCCAGC 60.745 60.000 0.00 0.00 0.00 4.85
749 768 0.905357 AGAATCGACCTTCCACCCAG 59.095 55.000 0.00 0.00 0.00 4.45
751 770 0.902531 TGAGAATCGACCTTCCACCC 59.097 55.000 0.00 0.00 38.61 4.61
753 772 3.594603 TCTTGAGAATCGACCTTCCAC 57.405 47.619 0.00 0.00 38.61 4.02
754 773 4.467795 AGAATCTTGAGAATCGACCTTCCA 59.532 41.667 0.00 0.00 38.61 3.53
755 774 4.808364 CAGAATCTTGAGAATCGACCTTCC 59.192 45.833 0.00 0.00 38.61 3.46
756 775 5.655488 TCAGAATCTTGAGAATCGACCTTC 58.345 41.667 0.00 0.00 38.61 3.46
757 776 5.659463 CTCAGAATCTTGAGAATCGACCTT 58.341 41.667 0.00 0.00 45.95 3.50
758 777 5.261209 CTCAGAATCTTGAGAATCGACCT 57.739 43.478 0.00 0.00 45.95 3.85
795 814 1.213296 ATCCGACTATGGCCCAGTTT 58.787 50.000 8.41 0.00 0.00 2.66
796 815 1.141053 GAATCCGACTATGGCCCAGTT 59.859 52.381 8.41 0.00 0.00 3.16
797 816 0.759346 GAATCCGACTATGGCCCAGT 59.241 55.000 6.81 6.81 0.00 4.00
798 817 0.758734 TGAATCCGACTATGGCCCAG 59.241 55.000 0.00 0.00 0.00 4.45
799 818 0.758734 CTGAATCCGACTATGGCCCA 59.241 55.000 0.00 0.00 0.00 5.36
800 819 1.048601 TCTGAATCCGACTATGGCCC 58.951 55.000 0.00 0.00 0.00 5.80
803 822 5.428253 TCCTTTTTCTGAATCCGACTATGG 58.572 41.667 0.00 0.00 0.00 2.74
839 859 2.363018 CTGGACAGGCGAGGGAGA 60.363 66.667 0.00 0.00 0.00 3.71
850 870 4.570772 GCTGATATTTAAAGACGCTGGACA 59.429 41.667 0.00 0.00 0.00 4.02
894 932 1.749258 GGGGATCGGAAGGTGTTGC 60.749 63.158 0.00 0.00 0.00 4.17
912 951 1.028905 TTTTGGCGAGGTTTGTCTGG 58.971 50.000 0.00 0.00 0.00 3.86
996 1075 4.880426 TCGAGCCCCTCCATCCCC 62.880 72.222 0.00 0.00 0.00 4.81
1366 1445 2.743928 GCCTGTCGACTTGCCCTG 60.744 66.667 17.92 0.00 0.00 4.45
1501 1580 0.950555 TGCTGAAGCTTGTACGCCTG 60.951 55.000 2.10 0.00 42.66 4.85
1756 1841 1.444933 TCCTCCACTTGTGACCCAAT 58.555 50.000 1.89 0.00 31.20 3.16
1758 1843 1.217916 TTTCCTCCACTTGTGACCCA 58.782 50.000 1.89 0.00 0.00 4.51
1857 2144 1.281899 GGACGATTTCTTCTCCAGCG 58.718 55.000 0.00 0.00 0.00 5.18
2021 2311 1.277557 ACTCTGCTTCAGATGGACCAC 59.722 52.381 0.00 0.00 39.92 4.16
2199 4594 0.674581 CGGCATTGCACCTCTTCTCA 60.675 55.000 11.39 0.00 0.00 3.27
2296 4701 9.303537 GTGAGTATCCTCTTATACACTTTGAAC 57.696 37.037 0.00 0.00 38.61 3.18
2409 4814 6.806739 AGCAAGAAGAACAACAACAGTTTTAC 59.193 34.615 0.00 0.00 0.00 2.01
2465 4871 5.077564 TGAGAAGAAGTACTAGTGCAGGAA 58.922 41.667 13.75 0.00 0.00 3.36
2482 4888 4.630940 GGAAACAGAGCAGAAGATGAGAAG 59.369 45.833 0.00 0.00 0.00 2.85
2483 4889 4.285517 AGGAAACAGAGCAGAAGATGAGAA 59.714 41.667 0.00 0.00 0.00 2.87
2485 4891 3.933955 CAGGAAACAGAGCAGAAGATGAG 59.066 47.826 0.00 0.00 0.00 2.90
2486 4892 3.326006 ACAGGAAACAGAGCAGAAGATGA 59.674 43.478 0.00 0.00 0.00 2.92
2487 4893 3.436015 CACAGGAAACAGAGCAGAAGATG 59.564 47.826 0.00 0.00 0.00 2.90
2488 4894 3.072184 ACACAGGAAACAGAGCAGAAGAT 59.928 43.478 0.00 0.00 0.00 2.40
2544 4951 3.185246 TGCTTGCTTATCTGAGCCTAC 57.815 47.619 0.00 0.00 42.01 3.18
2585 4992 4.466726 ACTCCTACTTCTTATCTGCGGTTT 59.533 41.667 0.00 0.00 0.00 3.27
2619 5026 7.014615 AGAGCAGGTGAAACAGTTTTGATTTAT 59.985 33.333 0.00 0.00 39.98 1.40
2725 5133 9.569122 AATAACTGTTTACTCCACACTGTAAAT 57.431 29.630 0.00 0.00 39.70 1.40
2728 5136 8.640651 TGTAATAACTGTTTACTCCACACTGTA 58.359 33.333 0.00 0.00 32.09 2.74
2729 5137 7.502696 TGTAATAACTGTTTACTCCACACTGT 58.497 34.615 0.00 0.00 32.09 3.55
2730 5138 7.656137 ACTGTAATAACTGTTTACTCCACACTG 59.344 37.037 0.00 0.00 34.44 3.66
2731 5139 7.656137 CACTGTAATAACTGTTTACTCCACACT 59.344 37.037 0.00 0.00 35.79 3.55
2732 5140 7.440255 ACACTGTAATAACTGTTTACTCCACAC 59.560 37.037 0.00 0.00 35.79 3.82
2734 5142 7.654520 TGACACTGTAATAACTGTTTACTCCAC 59.345 37.037 0.00 0.00 35.79 4.02
2735 5143 7.728148 TGACACTGTAATAACTGTTTACTCCA 58.272 34.615 0.00 0.00 35.79 3.86
2736 5144 8.597662 TTGACACTGTAATAACTGTTTACTCC 57.402 34.615 0.00 0.00 35.79 3.85
2750 5158 9.605955 CGTAAATCATGAAAATTGACACTGTAA 57.394 29.630 0.00 0.00 0.00 2.41
2751 5159 8.233868 CCGTAAATCATGAAAATTGACACTGTA 58.766 33.333 0.00 0.00 0.00 2.74
2752 5160 7.083858 CCGTAAATCATGAAAATTGACACTGT 58.916 34.615 0.00 0.00 0.00 3.55
2753 5161 6.527722 CCCGTAAATCATGAAAATTGACACTG 59.472 38.462 0.00 0.00 0.00 3.66
2755 5163 6.307800 CACCCGTAAATCATGAAAATTGACAC 59.692 38.462 0.00 0.00 0.00 3.67
2757 5165 6.307800 CACACCCGTAAATCATGAAAATTGAC 59.692 38.462 0.00 0.00 0.00 3.18
2759 5167 6.385843 TCACACCCGTAAATCATGAAAATTG 58.614 36.000 0.00 0.00 0.00 2.32
2760 5168 6.582677 TCACACCCGTAAATCATGAAAATT 57.417 33.333 0.00 0.00 0.00 1.82
2761 5169 6.208599 ACTTCACACCCGTAAATCATGAAAAT 59.791 34.615 0.00 0.00 0.00 1.82
2762 5170 5.533154 ACTTCACACCCGTAAATCATGAAAA 59.467 36.000 0.00 0.00 0.00 2.29
2765 5173 4.280436 ACTTCACACCCGTAAATCATGA 57.720 40.909 0.00 0.00 0.00 3.07
2766 5174 5.175859 ACTACTTCACACCCGTAAATCATG 58.824 41.667 0.00 0.00 0.00 3.07
2767 5175 5.046878 TGACTACTTCACACCCGTAAATCAT 60.047 40.000 0.00 0.00 0.00 2.45
2768 5176 4.281435 TGACTACTTCACACCCGTAAATCA 59.719 41.667 0.00 0.00 0.00 2.57
2769 5177 4.813027 TGACTACTTCACACCCGTAAATC 58.187 43.478 0.00 0.00 0.00 2.17
2770 5178 4.877378 TGACTACTTCACACCCGTAAAT 57.123 40.909 0.00 0.00 0.00 1.40
2772 5180 6.534475 AATATGACTACTTCACACCCGTAA 57.466 37.500 0.00 0.00 36.92 3.18
2774 5182 5.416271 AAATATGACTACTTCACACCCGT 57.584 39.130 0.00 0.00 36.92 5.28
2775 5183 6.183360 GGAAAAATATGACTACTTCACACCCG 60.183 42.308 0.00 0.00 36.92 5.28
2776 5184 6.884836 AGGAAAAATATGACTACTTCACACCC 59.115 38.462 0.00 0.00 36.92 4.61
2777 5185 7.923414 AGGAAAAATATGACTACTTCACACC 57.077 36.000 0.00 0.00 36.92 4.16
2778 5186 8.999431 TCAAGGAAAAATATGACTACTTCACAC 58.001 33.333 0.00 0.00 36.92 3.82
2779 5187 9.567776 TTCAAGGAAAAATATGACTACTTCACA 57.432 29.630 0.00 0.00 36.92 3.58
2790 5198 9.859427 TGCACTTAGATTTCAAGGAAAAATATG 57.141 29.630 0.00 0.00 35.11 1.78
2793 5201 9.428097 GATTGCACTTAGATTTCAAGGAAAAAT 57.572 29.630 0.00 0.00 35.11 1.82
2794 5202 8.641541 AGATTGCACTTAGATTTCAAGGAAAAA 58.358 29.630 0.00 0.00 35.11 1.94
2795 5203 8.084073 CAGATTGCACTTAGATTTCAAGGAAAA 58.916 33.333 0.00 0.00 35.11 2.29
2797 5205 6.716628 ACAGATTGCACTTAGATTTCAAGGAA 59.283 34.615 0.00 0.00 0.00 3.36
2800 5208 7.094890 ACAGACAGATTGCACTTAGATTTCAAG 60.095 37.037 0.00 0.00 0.00 3.02
2803 5211 6.593382 AGACAGACAGATTGCACTTAGATTTC 59.407 38.462 0.00 0.00 0.00 2.17
2804 5212 6.471146 AGACAGACAGATTGCACTTAGATTT 58.529 36.000 0.00 0.00 0.00 2.17
2805 5213 6.047511 AGACAGACAGATTGCACTTAGATT 57.952 37.500 0.00 0.00 0.00 2.40
2806 5214 5.674052 AGACAGACAGATTGCACTTAGAT 57.326 39.130 0.00 0.00 0.00 1.98
2808 5216 4.993584 ACAAGACAGACAGATTGCACTTAG 59.006 41.667 0.00 0.00 0.00 2.18
2809 5217 4.960938 ACAAGACAGACAGATTGCACTTA 58.039 39.130 0.00 0.00 0.00 2.24
2812 5220 3.851105 GCAACAAGACAGACAGATTGCAC 60.851 47.826 0.00 0.00 40.46 4.57
2814 5222 2.551459 AGCAACAAGACAGACAGATTGC 59.449 45.455 0.00 0.00 40.92 3.56
2815 5223 5.468072 AGTTAGCAACAAGACAGACAGATTG 59.532 40.000 0.00 0.00 0.00 2.67
2817 5225 4.993584 CAGTTAGCAACAAGACAGACAGAT 59.006 41.667 0.00 0.00 0.00 2.90
2819 5227 4.371786 TCAGTTAGCAACAAGACAGACAG 58.628 43.478 0.00 0.00 0.00 3.51
2821 5229 5.931441 ATTCAGTTAGCAACAAGACAGAC 57.069 39.130 0.00 0.00 0.00 3.51
2822 5230 6.942532 AAATTCAGTTAGCAACAAGACAGA 57.057 33.333 0.00 0.00 0.00 3.41
2823 5231 7.639039 TGTAAATTCAGTTAGCAACAAGACAG 58.361 34.615 0.00 0.00 0.00 3.51
2825 5233 7.639945 ACTGTAAATTCAGTTAGCAACAAGAC 58.360 34.615 0.00 0.00 44.92 3.01
2826 5234 7.801716 ACTGTAAATTCAGTTAGCAACAAGA 57.198 32.000 0.00 0.00 44.92 3.02
2827 5235 9.760660 GATACTGTAAATTCAGTTAGCAACAAG 57.239 33.333 5.23 0.00 44.92 3.16
2828 5236 9.502091 AGATACTGTAAATTCAGTTAGCAACAA 57.498 29.630 5.23 0.00 44.92 2.83
2836 5244 9.654663 GACCACTTAGATACTGTAAATTCAGTT 57.345 33.333 5.23 0.00 44.92 3.16
2839 5247 8.475639 GGAGACCACTTAGATACTGTAAATTCA 58.524 37.037 0.00 0.00 0.00 2.57
2840 5248 8.475639 TGGAGACCACTTAGATACTGTAAATTC 58.524 37.037 0.00 0.00 0.00 2.17
2845 5253 7.973048 ATTTGGAGACCACTTAGATACTGTA 57.027 36.000 0.00 0.00 30.78 2.74
2847 5255 7.493971 CAGAATTTGGAGACCACTTAGATACTG 59.506 40.741 0.00 0.00 30.78 2.74
2848 5256 7.560368 CAGAATTTGGAGACCACTTAGATACT 58.440 38.462 0.00 0.00 30.78 2.12
2849 5257 6.258947 GCAGAATTTGGAGACCACTTAGATAC 59.741 42.308 0.00 0.00 30.78 2.24
2851 5259 5.189180 GCAGAATTTGGAGACCACTTAGAT 58.811 41.667 0.00 0.00 30.78 1.98
2852 5260 4.041567 TGCAGAATTTGGAGACCACTTAGA 59.958 41.667 0.00 0.00 30.78 2.10
2854 5262 4.365514 TGCAGAATTTGGAGACCACTTA 57.634 40.909 0.00 0.00 30.78 2.24
2855 5263 3.228188 TGCAGAATTTGGAGACCACTT 57.772 42.857 0.00 0.00 30.78 3.16
2856 5264 2.957402 TGCAGAATTTGGAGACCACT 57.043 45.000 0.00 0.00 30.78 4.00
2863 5271 8.347004 TGAACATAAATACTGCAGAATTTGGA 57.653 30.769 23.35 3.46 0.00 3.53
2864 5272 9.027129 CATGAACATAAATACTGCAGAATTTGG 57.973 33.333 23.35 6.56 0.00 3.28
2865 5273 9.791820 TCATGAACATAAATACTGCAGAATTTG 57.208 29.630 23.35 11.98 0.00 2.32
2867 5275 9.182214 AGTCATGAACATAAATACTGCAGAATT 57.818 29.630 23.35 13.97 0.00 2.17
2870 5278 9.098355 GTAAGTCATGAACATAAATACTGCAGA 57.902 33.333 23.35 4.31 0.00 4.26
2872 5280 8.882736 CAGTAAGTCATGAACATAAATACTGCA 58.117 33.333 0.00 0.00 33.65 4.41
2873 5281 9.098355 TCAGTAAGTCATGAACATAAATACTGC 57.902 33.333 0.00 0.00 38.25 4.40
2887 5295 8.539770 AAGACAACATAGTTCAGTAAGTCATG 57.460 34.615 0.00 0.00 0.00 3.07
2917 5325 8.353423 ACAACTATTTAGATCAAGGCATTGTT 57.647 30.769 11.36 2.17 37.68 2.83
2918 5326 7.944729 ACAACTATTTAGATCAAGGCATTGT 57.055 32.000 11.36 0.00 37.68 2.71
2950 5369 8.739972 AGGAACAAATTACACAGAATTATGGAC 58.260 33.333 4.88 0.00 0.00 4.02
2999 5418 1.134946 AGCAAGCACAGGAACAACAAC 59.865 47.619 0.00 0.00 0.00 3.32
3095 5514 5.705400 ACAAAAGGGATTTCAGAAAGGAGA 58.295 37.500 1.28 0.00 0.00 3.71
3150 5569 7.688372 ACGAATTAATGCTCACTACATCTTTG 58.312 34.615 0.00 0.00 0.00 2.77
3170 5589 4.576330 AGGGATTTCAGAAAGGACGAAT 57.424 40.909 1.28 0.00 0.00 3.34
3171 5590 4.367039 AAGGGATTTCAGAAAGGACGAA 57.633 40.909 1.28 0.00 0.00 3.85
3172 5591 4.367039 AAAGGGATTTCAGAAAGGACGA 57.633 40.909 1.28 0.00 0.00 4.20
3173 5592 5.453567 AAAAAGGGATTTCAGAAAGGACG 57.546 39.130 1.28 0.00 0.00 4.79
3174 5593 9.424319 GATTTAAAAAGGGATTTCAGAAAGGAC 57.576 33.333 1.28 0.00 0.00 3.85
3175 5594 8.593679 GGATTTAAAAAGGGATTTCAGAAAGGA 58.406 33.333 1.28 0.00 0.00 3.36
3176 5595 7.545615 CGGATTTAAAAAGGGATTTCAGAAAGG 59.454 37.037 1.28 0.00 0.00 3.11
3177 5596 8.303876 TCGGATTTAAAAAGGGATTTCAGAAAG 58.696 33.333 1.28 0.00 0.00 2.62
3178 5597 8.184304 TCGGATTTAAAAAGGGATTTCAGAAA 57.816 30.769 0.00 0.00 0.00 2.52
3179 5598 7.768807 TCGGATTTAAAAAGGGATTTCAGAA 57.231 32.000 0.00 0.00 0.00 3.02
3180 5599 7.630513 GCATCGGATTTAAAAAGGGATTTCAGA 60.631 37.037 0.00 0.00 0.00 3.27
3181 5600 6.476706 GCATCGGATTTAAAAAGGGATTTCAG 59.523 38.462 0.00 0.00 0.00 3.02
3182 5601 6.154363 AGCATCGGATTTAAAAAGGGATTTCA 59.846 34.615 0.00 0.00 0.00 2.69
3183 5602 6.476706 CAGCATCGGATTTAAAAAGGGATTTC 59.523 38.462 0.00 0.00 0.00 2.17
3184 5603 6.154363 TCAGCATCGGATTTAAAAAGGGATTT 59.846 34.615 0.00 0.00 0.00 2.17
3185 5604 5.656416 TCAGCATCGGATTTAAAAAGGGATT 59.344 36.000 0.00 0.00 0.00 3.01
3186 5605 5.200483 TCAGCATCGGATTTAAAAAGGGAT 58.800 37.500 0.00 0.00 0.00 3.85
3187 5606 4.594970 TCAGCATCGGATTTAAAAAGGGA 58.405 39.130 0.00 0.00 0.00 4.20
3188 5607 4.981806 TCAGCATCGGATTTAAAAAGGG 57.018 40.909 0.00 0.00 0.00 3.95
3189 5608 5.954335 ACTTCAGCATCGGATTTAAAAAGG 58.046 37.500 0.00 0.00 0.00 3.11
3190 5609 7.308435 AGAACTTCAGCATCGGATTTAAAAAG 58.692 34.615 0.00 0.00 0.00 2.27
3191 5610 7.214467 AGAACTTCAGCATCGGATTTAAAAA 57.786 32.000 0.00 0.00 0.00 1.94
3192 5611 6.817765 AGAACTTCAGCATCGGATTTAAAA 57.182 33.333 0.00 0.00 0.00 1.52
3193 5612 6.817765 AAGAACTTCAGCATCGGATTTAAA 57.182 33.333 0.00 0.00 0.00 1.52
3194 5613 6.817765 AAAGAACTTCAGCATCGGATTTAA 57.182 33.333 0.00 0.00 0.00 1.52
3195 5614 6.429692 TGAAAAGAACTTCAGCATCGGATTTA 59.570 34.615 0.00 0.00 31.67 1.40
3196 5615 5.241506 TGAAAAGAACTTCAGCATCGGATTT 59.758 36.000 0.00 0.00 31.67 2.17
3197 5616 4.761739 TGAAAAGAACTTCAGCATCGGATT 59.238 37.500 0.00 0.00 31.67 3.01
3198 5617 4.326826 TGAAAAGAACTTCAGCATCGGAT 58.673 39.130 0.00 0.00 31.67 4.18
3199 5618 3.738982 TGAAAAGAACTTCAGCATCGGA 58.261 40.909 0.00 0.00 31.67 4.55
3200 5619 4.691860 ATGAAAAGAACTTCAGCATCGG 57.308 40.909 0.00 0.00 38.66 4.18
3201 5620 6.128445 ACACTATGAAAAGAACTTCAGCATCG 60.128 38.462 0.00 0.00 38.66 3.84
3202 5621 7.138692 ACACTATGAAAAGAACTTCAGCATC 57.861 36.000 0.00 0.00 38.66 3.91
3203 5622 8.798859 ATACACTATGAAAAGAACTTCAGCAT 57.201 30.769 0.00 0.00 38.66 3.79
3204 5623 9.719355 TTATACACTATGAAAAGAACTTCAGCA 57.281 29.630 0.00 0.00 38.66 4.41
3218 5637 9.508642 CAGTGAGTATCCTCTTATACACTATGA 57.491 37.037 0.00 0.00 38.61 2.15
3219 5638 8.735315 CCAGTGAGTATCCTCTTATACACTATG 58.265 40.741 0.00 0.00 38.61 2.23
3220 5639 7.394923 GCCAGTGAGTATCCTCTTATACACTAT 59.605 40.741 0.00 0.00 38.61 2.12
3221 5640 6.715718 GCCAGTGAGTATCCTCTTATACACTA 59.284 42.308 0.00 0.00 38.61 2.74
3222 5641 5.536916 GCCAGTGAGTATCCTCTTATACACT 59.463 44.000 0.00 0.00 38.61 3.55
3223 5642 5.536916 AGCCAGTGAGTATCCTCTTATACAC 59.463 44.000 0.00 0.00 38.61 2.90
3224 5643 5.536538 CAGCCAGTGAGTATCCTCTTATACA 59.463 44.000 0.00 0.00 38.61 2.29
3225 5644 5.770663 TCAGCCAGTGAGTATCCTCTTATAC 59.229 44.000 0.00 0.00 38.61 1.47
3226 5645 5.953571 TCAGCCAGTGAGTATCCTCTTATA 58.046 41.667 0.00 0.00 38.61 0.98
3227 5646 4.809193 TCAGCCAGTGAGTATCCTCTTAT 58.191 43.478 0.00 0.00 38.61 1.73
3228 5647 4.251103 TCAGCCAGTGAGTATCCTCTTA 57.749 45.455 0.00 0.00 38.61 2.10
3229 5648 3.107402 TCAGCCAGTGAGTATCCTCTT 57.893 47.619 0.00 0.00 38.61 2.85
3230 5649 2.836636 TCAGCCAGTGAGTATCCTCT 57.163 50.000 0.00 0.00 38.61 3.69
3231 5650 2.697751 ACATCAGCCAGTGAGTATCCTC 59.302 50.000 0.00 0.00 39.07 3.71
3232 5651 2.756907 ACATCAGCCAGTGAGTATCCT 58.243 47.619 0.00 0.00 39.07 3.24
3233 5652 4.881019 ATACATCAGCCAGTGAGTATCC 57.119 45.455 0.00 0.00 39.07 2.59
3234 5653 6.987386 ACTAATACATCAGCCAGTGAGTATC 58.013 40.000 0.00 0.00 39.07 2.24
3235 5654 6.985653 ACTAATACATCAGCCAGTGAGTAT 57.014 37.500 0.00 0.00 39.07 2.12
3236 5655 6.459710 CGAACTAATACATCAGCCAGTGAGTA 60.460 42.308 0.00 0.00 39.07 2.59
3237 5656 5.665459 GAACTAATACATCAGCCAGTGAGT 58.335 41.667 0.00 0.00 39.07 3.41
3238 5657 4.742167 CGAACTAATACATCAGCCAGTGAG 59.258 45.833 0.00 0.00 39.07 3.51
3239 5658 4.159693 ACGAACTAATACATCAGCCAGTGA 59.840 41.667 0.00 0.00 40.38 3.41
3240 5659 4.433615 ACGAACTAATACATCAGCCAGTG 58.566 43.478 0.00 0.00 0.00 3.66
3241 5660 4.441634 GGACGAACTAATACATCAGCCAGT 60.442 45.833 0.00 0.00 0.00 4.00
3242 5661 4.051922 GGACGAACTAATACATCAGCCAG 58.948 47.826 0.00 0.00 0.00 4.85
3243 5662 3.449377 TGGACGAACTAATACATCAGCCA 59.551 43.478 0.00 0.00 0.00 4.75
3244 5663 4.054780 TGGACGAACTAATACATCAGCC 57.945 45.455 0.00 0.00 0.00 4.85
3245 5664 5.050490 ACATGGACGAACTAATACATCAGC 58.950 41.667 0.00 0.00 0.00 4.26
3246 5665 6.359883 CGTACATGGACGAACTAATACATCAG 59.640 42.308 26.59 0.00 45.82 2.90
3247 5666 6.203647 CGTACATGGACGAACTAATACATCA 58.796 40.000 26.59 0.00 45.82 3.07
3248 5667 6.670990 CGTACATGGACGAACTAATACATC 57.329 41.667 26.59 0.00 45.82 3.06
3260 5679 3.917870 GGCGATCGTACATGGACG 58.082 61.111 24.84 24.84 44.29 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.