Multiple sequence alignment - TraesCS7B01G115300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G115300 chr7B 100.000 2521 0 0 1 2521 133793787 133791267 0.000000e+00 4656.0
1 TraesCS7B01G115300 chr7B 82.547 212 33 4 77 286 671252604 671252813 1.540000e-42 183.0
2 TraesCS7B01G115300 chr7D 88.564 1163 59 28 797 1943 168495142 168494038 0.000000e+00 1343.0
3 TraesCS7B01G115300 chr7D 88.032 493 24 14 327 793 168495661 168495178 3.670000e-153 551.0
4 TraesCS7B01G115300 chr7D 76.385 343 62 12 1987 2323 122880358 122880029 1.550000e-37 167.0
5 TraesCS7B01G115300 chr7A 90.486 988 50 22 578 1548 170685407 170684447 0.000000e+00 1264.0
6 TraesCS7B01G115300 chr7A 89.180 573 31 12 1532 2092 170684432 170683879 0.000000e+00 686.0
7 TraesCS7B01G115300 chr7A 88.889 117 9 2 2181 2297 170683736 170683624 9.400000e-30 141.0
8 TraesCS7B01G115300 chr2B 98.587 283 4 0 1 283 523236693 523236975 3.740000e-138 501.0
9 TraesCS7B01G115300 chr1B 93.173 249 17 0 44 292 563987422 563987670 1.420000e-97 366.0
10 TraesCS7B01G115300 chr5A 92.233 206 14 2 76 280 523655646 523655850 8.820000e-75 291.0
11 TraesCS7B01G115300 chr5A 95.000 80 4 0 1 80 523634880 523634959 2.630000e-25 126.0
12 TraesCS7B01G115300 chr3B 87.895 190 20 3 55 242 671376007 671375819 1.170000e-53 220.0
13 TraesCS7B01G115300 chr6D 88.439 173 16 4 113 282 407465433 407465604 3.290000e-49 206.0
14 TraesCS7B01G115300 chr6D 83.636 220 33 3 63 281 68856703 68856920 1.180000e-48 204.0
15 TraesCS7B01G115300 chrUn 82.075 212 34 4 77 286 147150735 147150944 7.170000e-41 178.0
16 TraesCS7B01G115300 chrUn 82.075 212 34 4 77 286 147302007 147302216 7.170000e-41 178.0
17 TraesCS7B01G115300 chr3A 74.913 287 53 13 2199 2472 692486925 692487205 2.050000e-21 113.0
18 TraesCS7B01G115300 chr2A 74.453 274 46 12 2195 2458 604923034 604922775 2.060000e-16 97.1
19 TraesCS7B01G115300 chr4A 84.416 77 9 3 2188 2262 682153116 682153191 3.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G115300 chr7B 133791267 133793787 2520 True 4656 4656 100.000000 1 2521 1 chr7B.!!$R1 2520
1 TraesCS7B01G115300 chr7D 168494038 168495661 1623 True 947 1343 88.298000 327 1943 2 chr7D.!!$R2 1616
2 TraesCS7B01G115300 chr7A 170683624 170685407 1783 True 697 1264 89.518333 578 2297 3 chr7A.!!$R1 1719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.031515 TGGAGAGGGCCGGAGATAAA 60.032 55.0 5.05 0.0 0.0 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1843 0.180171 TAATCATGTGGGAGTGGCGG 59.82 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.123251 GATGGAGAGGGCCGGAGA 60.123 66.667 5.05 0.00 0.00 3.71
18 19 1.535202 GATGGAGAGGGCCGGAGAT 60.535 63.158 5.05 0.00 0.00 2.75
19 20 0.251832 GATGGAGAGGGCCGGAGATA 60.252 60.000 5.05 0.00 0.00 1.98
20 21 0.191064 ATGGAGAGGGCCGGAGATAA 59.809 55.000 5.05 0.00 0.00 1.75
21 22 0.031515 TGGAGAGGGCCGGAGATAAA 60.032 55.000 5.05 0.00 0.00 1.40
22 23 1.353091 GGAGAGGGCCGGAGATAAAT 58.647 55.000 5.05 0.00 0.00 1.40
23 24 2.158219 TGGAGAGGGCCGGAGATAAATA 60.158 50.000 5.05 0.00 0.00 1.40
24 25 2.498078 GGAGAGGGCCGGAGATAAATAG 59.502 54.545 5.05 0.00 0.00 1.73
25 26 3.166679 GAGAGGGCCGGAGATAAATAGT 58.833 50.000 5.05 0.00 0.00 2.12
26 27 2.900546 AGAGGGCCGGAGATAAATAGTG 59.099 50.000 5.05 0.00 0.00 2.74
27 28 2.633481 GAGGGCCGGAGATAAATAGTGT 59.367 50.000 5.05 0.00 0.00 3.55
28 29 3.046374 AGGGCCGGAGATAAATAGTGTT 58.954 45.455 5.05 0.00 0.00 3.32
29 30 3.139077 GGGCCGGAGATAAATAGTGTTG 58.861 50.000 5.05 0.00 0.00 3.33
30 31 3.139077 GGCCGGAGATAAATAGTGTTGG 58.861 50.000 5.05 0.00 0.00 3.77
31 32 3.139077 GCCGGAGATAAATAGTGTTGGG 58.861 50.000 5.05 0.00 0.00 4.12
32 33 3.433173 GCCGGAGATAAATAGTGTTGGGT 60.433 47.826 5.05 0.00 0.00 4.51
33 34 4.127171 CCGGAGATAAATAGTGTTGGGTG 58.873 47.826 0.00 0.00 0.00 4.61
34 35 3.560068 CGGAGATAAATAGTGTTGGGTGC 59.440 47.826 0.00 0.00 0.00 5.01
35 36 3.883489 GGAGATAAATAGTGTTGGGTGCC 59.117 47.826 0.00 0.00 0.00 5.01
36 37 4.385310 GGAGATAAATAGTGTTGGGTGCCT 60.385 45.833 0.00 0.00 0.00 4.75
37 38 5.193099 AGATAAATAGTGTTGGGTGCCTT 57.807 39.130 0.00 0.00 0.00 4.35
38 39 5.580022 AGATAAATAGTGTTGGGTGCCTTT 58.420 37.500 0.00 0.00 0.00 3.11
39 40 6.727394 AGATAAATAGTGTTGGGTGCCTTTA 58.273 36.000 0.00 0.00 0.00 1.85
40 41 7.354312 AGATAAATAGTGTTGGGTGCCTTTAT 58.646 34.615 0.00 0.00 0.00 1.40
41 42 5.659440 AAATAGTGTTGGGTGCCTTTATG 57.341 39.130 0.00 0.00 0.00 1.90
42 43 2.675658 AGTGTTGGGTGCCTTTATGT 57.324 45.000 0.00 0.00 0.00 2.29
43 44 3.799432 AGTGTTGGGTGCCTTTATGTA 57.201 42.857 0.00 0.00 0.00 2.29
44 45 4.316025 AGTGTTGGGTGCCTTTATGTAT 57.684 40.909 0.00 0.00 0.00 2.29
45 46 4.270008 AGTGTTGGGTGCCTTTATGTATC 58.730 43.478 0.00 0.00 0.00 2.24
46 47 4.018415 AGTGTTGGGTGCCTTTATGTATCT 60.018 41.667 0.00 0.00 0.00 1.98
47 48 4.705023 GTGTTGGGTGCCTTTATGTATCTT 59.295 41.667 0.00 0.00 0.00 2.40
48 49 4.947388 TGTTGGGTGCCTTTATGTATCTTC 59.053 41.667 0.00 0.00 0.00 2.87
49 50 5.193679 GTTGGGTGCCTTTATGTATCTTCT 58.806 41.667 0.00 0.00 0.00 2.85
50 51 5.036117 TGGGTGCCTTTATGTATCTTCTC 57.964 43.478 0.00 0.00 0.00 2.87
51 52 4.141482 TGGGTGCCTTTATGTATCTTCTCC 60.141 45.833 0.00 0.00 0.00 3.71
52 53 4.141482 GGGTGCCTTTATGTATCTTCTCCA 60.141 45.833 0.00 0.00 0.00 3.86
53 54 5.437060 GGTGCCTTTATGTATCTTCTCCAA 58.563 41.667 0.00 0.00 0.00 3.53
54 55 5.885912 GGTGCCTTTATGTATCTTCTCCAAA 59.114 40.000 0.00 0.00 0.00 3.28
55 56 6.547510 GGTGCCTTTATGTATCTTCTCCAAAT 59.452 38.462 0.00 0.00 0.00 2.32
56 57 7.719633 GGTGCCTTTATGTATCTTCTCCAAATA 59.280 37.037 0.00 0.00 0.00 1.40
57 58 9.120538 GTGCCTTTATGTATCTTCTCCAAATAA 57.879 33.333 0.00 0.00 0.00 1.40
58 59 9.693739 TGCCTTTATGTATCTTCTCCAAATAAA 57.306 29.630 0.00 0.00 0.00 1.40
66 67 9.605275 TGTATCTTCTCCAAATAAATGTCTGAG 57.395 33.333 0.00 0.00 0.00 3.35
67 68 9.823647 GTATCTTCTCCAAATAAATGTCTGAGA 57.176 33.333 0.00 0.00 0.00 3.27
69 70 8.728337 TCTTCTCCAAATAAATGTCTGAGATG 57.272 34.615 0.00 0.00 0.00 2.90
70 71 7.772292 TCTTCTCCAAATAAATGTCTGAGATGG 59.228 37.037 0.00 0.00 0.00 3.51
71 72 6.359804 TCTCCAAATAAATGTCTGAGATGGG 58.640 40.000 0.00 0.00 0.00 4.00
72 73 6.158520 TCTCCAAATAAATGTCTGAGATGGGA 59.841 38.462 0.00 0.00 0.00 4.37
73 74 6.359804 TCCAAATAAATGTCTGAGATGGGAG 58.640 40.000 0.00 0.00 0.00 4.30
74 75 5.009410 CCAAATAAATGTCTGAGATGGGAGC 59.991 44.000 0.00 0.00 0.00 4.70
75 76 2.322355 AAATGTCTGAGATGGGAGCG 57.678 50.000 0.00 0.00 0.00 5.03
76 77 0.467384 AATGTCTGAGATGGGAGCGG 59.533 55.000 0.00 0.00 0.00 5.52
77 78 2.037620 ATGTCTGAGATGGGAGCGGC 62.038 60.000 0.00 0.00 0.00 6.53
78 79 3.157252 TCTGAGATGGGAGCGGCC 61.157 66.667 0.00 0.00 0.00 6.13
92 93 3.948719 GGCCCACACCTCGGTTCA 61.949 66.667 0.00 0.00 0.00 3.18
93 94 2.112297 GCCCACACCTCGGTTCAA 59.888 61.111 0.00 0.00 0.00 2.69
94 95 1.303317 GCCCACACCTCGGTTCAAT 60.303 57.895 0.00 0.00 0.00 2.57
95 96 1.586154 GCCCACACCTCGGTTCAATG 61.586 60.000 0.00 0.00 0.00 2.82
96 97 1.586154 CCCACACCTCGGTTCAATGC 61.586 60.000 0.00 0.00 0.00 3.56
97 98 1.586154 CCACACCTCGGTTCAATGCC 61.586 60.000 0.00 0.00 0.00 4.40
98 99 1.303317 ACACCTCGGTTCAATGCCC 60.303 57.895 0.00 0.00 0.00 5.36
99 100 2.046285 CACCTCGGTTCAATGCCCC 61.046 63.158 0.00 0.00 0.00 5.80
100 101 2.824041 CCTCGGTTCAATGCCCCG 60.824 66.667 4.41 4.41 43.03 5.73
101 102 3.508840 CTCGGTTCAATGCCCCGC 61.509 66.667 5.70 0.00 41.46 6.13
105 106 4.759205 GTTCAATGCCCCGCCCCT 62.759 66.667 0.00 0.00 0.00 4.79
106 107 4.757355 TTCAATGCCCCGCCCCTG 62.757 66.667 0.00 0.00 0.00 4.45
125 126 3.091318 CCTTGCAGGCCATCTACTG 57.909 57.895 5.01 0.00 37.76 2.74
129 130 2.187685 CAGGCCATCTACTGCGCA 59.812 61.111 10.98 10.98 0.00 6.09
130 131 1.227764 CAGGCCATCTACTGCGCAT 60.228 57.895 12.24 3.79 0.00 4.73
131 132 1.227764 AGGCCATCTACTGCGCATG 60.228 57.895 12.24 5.60 0.00 4.06
132 133 1.524621 GGCCATCTACTGCGCATGT 60.525 57.895 12.24 14.12 0.00 3.21
133 134 1.502163 GGCCATCTACTGCGCATGTC 61.502 60.000 12.24 0.00 0.00 3.06
134 135 0.811219 GCCATCTACTGCGCATGTCA 60.811 55.000 12.24 2.42 0.00 3.58
135 136 1.215244 CCATCTACTGCGCATGTCAG 58.785 55.000 12.24 5.93 37.56 3.51
136 137 1.472201 CCATCTACTGCGCATGTCAGT 60.472 52.381 12.24 20.82 45.71 3.41
137 138 2.274437 CATCTACTGCGCATGTCAGTT 58.726 47.619 21.76 7.33 41.61 3.16
138 139 1.713597 TCTACTGCGCATGTCAGTTG 58.286 50.000 21.76 19.77 41.61 3.16
139 140 1.000843 TCTACTGCGCATGTCAGTTGT 59.999 47.619 21.76 5.04 41.61 3.32
140 141 2.230266 TCTACTGCGCATGTCAGTTGTA 59.770 45.455 21.76 6.10 41.61 2.41
141 142 1.877637 ACTGCGCATGTCAGTTGTAA 58.122 45.000 12.24 0.00 41.61 2.41
142 143 2.217750 ACTGCGCATGTCAGTTGTAAA 58.782 42.857 12.24 0.00 41.61 2.01
143 144 2.616376 ACTGCGCATGTCAGTTGTAAAA 59.384 40.909 12.24 0.00 41.61 1.52
144 145 3.066064 ACTGCGCATGTCAGTTGTAAAAA 59.934 39.130 12.24 0.00 41.61 1.94
145 146 4.229096 CTGCGCATGTCAGTTGTAAAAAT 58.771 39.130 12.24 0.00 0.00 1.82
146 147 5.049060 ACTGCGCATGTCAGTTGTAAAAATA 60.049 36.000 12.24 0.00 41.61 1.40
147 148 5.150683 TGCGCATGTCAGTTGTAAAAATAC 58.849 37.500 5.66 0.00 0.00 1.89
148 149 4.259734 GCGCATGTCAGTTGTAAAAATACG 59.740 41.667 0.30 0.00 0.00 3.06
149 150 4.259734 CGCATGTCAGTTGTAAAAATACGC 59.740 41.667 0.00 0.00 0.00 4.42
150 151 5.150683 GCATGTCAGTTGTAAAAATACGCA 58.849 37.500 0.00 0.00 0.00 5.24
151 152 5.283717 GCATGTCAGTTGTAAAAATACGCAG 59.716 40.000 0.00 0.00 0.00 5.18
152 153 4.778904 TGTCAGTTGTAAAAATACGCAGC 58.221 39.130 0.00 0.00 0.00 5.25
153 154 4.513692 TGTCAGTTGTAAAAATACGCAGCT 59.486 37.500 0.00 0.00 0.00 4.24
154 155 5.697178 TGTCAGTTGTAAAAATACGCAGCTA 59.303 36.000 0.00 0.00 0.00 3.32
155 156 6.370442 TGTCAGTTGTAAAAATACGCAGCTAT 59.630 34.615 0.00 0.00 0.00 2.97
156 157 7.546316 TGTCAGTTGTAAAAATACGCAGCTATA 59.454 33.333 0.00 0.00 0.00 1.31
157 158 7.844653 GTCAGTTGTAAAAATACGCAGCTATAC 59.155 37.037 0.00 0.00 0.00 1.47
158 159 7.546316 TCAGTTGTAAAAATACGCAGCTATACA 59.454 33.333 0.00 0.00 0.00 2.29
159 160 7.846107 CAGTTGTAAAAATACGCAGCTATACAG 59.154 37.037 0.00 0.00 0.00 2.74
160 161 7.762615 AGTTGTAAAAATACGCAGCTATACAGA 59.237 33.333 0.00 0.00 0.00 3.41
161 162 8.548721 GTTGTAAAAATACGCAGCTATACAGAT 58.451 33.333 0.00 0.00 0.00 2.90
162 163 8.657074 TGTAAAAATACGCAGCTATACAGATT 57.343 30.769 0.00 0.00 0.00 2.40
163 164 8.547894 TGTAAAAATACGCAGCTATACAGATTG 58.452 33.333 0.00 0.00 0.00 2.67
164 165 7.553881 AAAAATACGCAGCTATACAGATTGT 57.446 32.000 0.00 0.00 0.00 2.71
165 166 7.553881 AAAATACGCAGCTATACAGATTGTT 57.446 32.000 0.00 0.00 0.00 2.83
166 167 8.657074 AAAATACGCAGCTATACAGATTGTTA 57.343 30.769 0.00 0.00 0.00 2.41
167 168 8.833231 AAATACGCAGCTATACAGATTGTTAT 57.167 30.769 0.00 0.00 0.00 1.89
168 169 9.923143 AAATACGCAGCTATACAGATTGTTATA 57.077 29.630 0.00 0.00 0.00 0.98
170 171 7.818493 ACGCAGCTATACAGATTGTTATATG 57.182 36.000 0.00 0.00 0.00 1.78
171 172 6.813649 ACGCAGCTATACAGATTGTTATATGG 59.186 38.462 0.00 0.00 0.00 2.74
172 173 6.256539 CGCAGCTATACAGATTGTTATATGGG 59.743 42.308 0.00 0.00 0.00 4.00
173 174 6.540189 GCAGCTATACAGATTGTTATATGGGG 59.460 42.308 0.00 0.00 0.00 4.96
174 175 7.050377 CAGCTATACAGATTGTTATATGGGGG 58.950 42.308 0.00 0.00 0.00 5.40
175 176 6.735704 AGCTATACAGATTGTTATATGGGGGT 59.264 38.462 0.00 0.00 0.00 4.95
176 177 7.239773 AGCTATACAGATTGTTATATGGGGGTT 59.760 37.037 0.00 0.00 0.00 4.11
177 178 7.336931 GCTATACAGATTGTTATATGGGGGTTG 59.663 40.741 0.00 0.00 0.00 3.77
178 179 5.725551 ACAGATTGTTATATGGGGGTTGA 57.274 39.130 0.00 0.00 0.00 3.18
179 180 6.086011 ACAGATTGTTATATGGGGGTTGAA 57.914 37.500 0.00 0.00 0.00 2.69
180 181 6.498538 ACAGATTGTTATATGGGGGTTGAAA 58.501 36.000 0.00 0.00 0.00 2.69
181 182 7.132128 ACAGATTGTTATATGGGGGTTGAAAT 58.868 34.615 0.00 0.00 0.00 2.17
182 183 7.287696 ACAGATTGTTATATGGGGGTTGAAATC 59.712 37.037 0.00 0.00 0.00 2.17
183 184 7.287466 CAGATTGTTATATGGGGGTTGAAATCA 59.713 37.037 0.00 0.00 0.00 2.57
184 185 8.012477 AGATTGTTATATGGGGGTTGAAATCAT 58.988 33.333 0.00 0.00 0.00 2.45
185 186 7.986553 TTGTTATATGGGGGTTGAAATCATT 57.013 32.000 0.00 0.00 0.00 2.57
186 187 9.667607 ATTGTTATATGGGGGTTGAAATCATTA 57.332 29.630 0.00 0.00 0.00 1.90
187 188 9.667607 TTGTTATATGGGGGTTGAAATCATTAT 57.332 29.630 0.00 0.00 0.00 1.28
190 191 7.938140 ATATGGGGGTTGAAATCATTATACG 57.062 36.000 0.00 0.00 0.00 3.06
191 192 4.465886 TGGGGGTTGAAATCATTATACGG 58.534 43.478 0.00 0.00 0.00 4.02
192 193 3.254903 GGGGGTTGAAATCATTATACGGC 59.745 47.826 0.00 0.00 0.00 5.68
193 194 4.142038 GGGGTTGAAATCATTATACGGCT 58.858 43.478 0.00 0.00 0.00 5.52
194 195 4.215613 GGGGTTGAAATCATTATACGGCTC 59.784 45.833 0.00 0.00 0.00 4.70
195 196 4.819630 GGGTTGAAATCATTATACGGCTCA 59.180 41.667 0.00 0.00 0.00 4.26
196 197 5.277828 GGGTTGAAATCATTATACGGCTCAC 60.278 44.000 0.00 0.00 0.00 3.51
206 207 3.775314 CGGCTCACGCGTATTGAA 58.225 55.556 13.44 0.00 36.88 2.69
207 208 1.631072 CGGCTCACGCGTATTGAAG 59.369 57.895 13.44 5.91 36.88 3.02
208 209 1.076533 CGGCTCACGCGTATTGAAGT 61.077 55.000 13.44 0.00 36.88 3.01
209 210 1.076332 GGCTCACGCGTATTGAAGTT 58.924 50.000 13.44 0.00 36.88 2.66
210 211 1.201921 GGCTCACGCGTATTGAAGTTG 60.202 52.381 13.44 0.00 36.88 3.16
211 212 1.786928 GCTCACGCGTATTGAAGTTGC 60.787 52.381 13.44 1.14 0.00 4.17
212 213 1.459209 CTCACGCGTATTGAAGTTGCA 59.541 47.619 13.44 0.00 0.00 4.08
213 214 1.193650 TCACGCGTATTGAAGTTGCAC 59.806 47.619 13.44 0.00 0.00 4.57
214 215 0.162933 ACGCGTATTGAAGTTGCACG 59.837 50.000 11.67 0.00 35.78 5.34
215 216 0.436913 CGCGTATTGAAGTTGCACGA 59.563 50.000 0.00 0.00 34.66 4.35
216 217 1.136474 CGCGTATTGAAGTTGCACGAA 60.136 47.619 0.00 0.00 34.66 3.85
217 218 2.473868 CGCGTATTGAAGTTGCACGAAT 60.474 45.455 0.00 0.00 34.66 3.34
218 219 3.091417 GCGTATTGAAGTTGCACGAATC 58.909 45.455 0.00 0.00 34.66 2.52
219 220 3.424302 GCGTATTGAAGTTGCACGAATCA 60.424 43.478 0.00 0.00 34.66 2.57
220 221 4.081761 CGTATTGAAGTTGCACGAATCAC 58.918 43.478 0.00 0.00 34.66 3.06
222 223 0.234625 TGAAGTTGCACGAATCACGC 59.765 50.000 0.00 0.00 46.94 5.34
223 224 0.785708 GAAGTTGCACGAATCACGCG 60.786 55.000 3.53 3.53 46.94 6.01
224 225 1.218875 AAGTTGCACGAATCACGCGA 61.219 50.000 15.93 0.00 46.94 5.87
225 226 1.225475 GTTGCACGAATCACGCGAG 60.225 57.895 15.93 4.59 46.94 5.03
238 239 3.081133 GCGAGTACATGCGGTGTG 58.919 61.111 4.94 0.00 42.24 3.82
239 240 2.452813 GCGAGTACATGCGGTGTGG 61.453 63.158 4.94 0.00 42.24 4.17
240 241 1.214325 CGAGTACATGCGGTGTGGA 59.786 57.895 4.94 0.00 42.24 4.02
241 242 0.179111 CGAGTACATGCGGTGTGGAT 60.179 55.000 4.94 0.00 42.24 3.41
242 243 1.066454 CGAGTACATGCGGTGTGGATA 59.934 52.381 4.94 0.00 42.24 2.59
243 244 2.470821 GAGTACATGCGGTGTGGATAC 58.529 52.381 4.94 0.00 42.24 2.24
244 245 1.138266 AGTACATGCGGTGTGGATACC 59.862 52.381 4.94 0.00 42.24 2.73
245 246 1.134640 GTACATGCGGTGTGGATACCA 60.135 52.381 4.94 0.00 42.24 3.25
246 247 0.107703 ACATGCGGTGTGGATACCAG 60.108 55.000 0.00 0.00 40.28 4.00
247 248 1.153168 ATGCGGTGTGGATACCAGC 60.153 57.895 0.00 0.00 40.89 4.85
248 249 2.513897 GCGGTGTGGATACCAGCC 60.514 66.667 0.00 0.00 40.89 4.85
249 250 2.202878 CGGTGTGGATACCAGCCG 60.203 66.667 15.27 15.27 43.11 5.52
250 251 2.513897 GGTGTGGATACCAGCCGC 60.514 66.667 0.00 0.00 40.54 6.53
251 252 2.890474 GTGTGGATACCAGCCGCG 60.890 66.667 0.00 0.00 38.75 6.46
252 253 4.830765 TGTGGATACCAGCCGCGC 62.831 66.667 0.00 0.00 38.75 6.86
279 280 3.698029 GCATGTCCACTTGCGATTATT 57.302 42.857 2.17 0.00 37.30 1.40
280 281 3.621794 GCATGTCCACTTGCGATTATTC 58.378 45.455 2.17 0.00 37.30 1.75
301 302 9.720667 TTATTCGCGTTATTGCTATATATACGT 57.279 29.630 5.77 0.00 0.00 3.57
303 304 8.533737 TTCGCGTTATTGCTATATATACGTAC 57.466 34.615 5.77 0.00 0.00 3.67
304 305 7.683746 TCGCGTTATTGCTATATATACGTACA 58.316 34.615 5.77 0.00 0.00 2.90
305 306 8.174422 TCGCGTTATTGCTATATATACGTACAA 58.826 33.333 5.77 0.00 0.00 2.41
306 307 8.787884 CGCGTTATTGCTATATATACGTACAAA 58.212 33.333 0.00 0.00 0.00 2.83
307 308 9.877096 GCGTTATTGCTATATATACGTACAAAC 57.123 33.333 0.00 0.00 0.00 2.93
314 315 9.836076 TGCTATATATACGTACAAACTCATGAC 57.164 33.333 0.00 0.00 0.00 3.06
315 316 9.836076 GCTATATATACGTACAAACTCATGACA 57.164 33.333 0.00 0.00 0.00 3.58
322 323 7.667043 ACGTACAAACTCATGACAATTATGT 57.333 32.000 0.00 0.00 44.25 2.29
323 324 8.766000 ACGTACAAACTCATGACAATTATGTA 57.234 30.769 0.00 0.00 40.74 2.29
324 325 9.378551 ACGTACAAACTCATGACAATTATGTAT 57.621 29.630 0.00 0.00 40.74 2.29
325 326 9.849607 CGTACAAACTCATGACAATTATGTATC 57.150 33.333 0.00 0.00 40.74 2.24
362 363 5.876357 ACTCTAGTAACTGAATTTTGCCCA 58.124 37.500 0.00 0.00 0.00 5.36
382 383 5.619981 GCCCAGTAAAACTTTGCTACAGATG 60.620 44.000 0.00 0.00 31.75 2.90
401 402 6.948309 ACAGATGAAACTAAAACAAGCCCTAT 59.052 34.615 0.00 0.00 0.00 2.57
406 407 8.276252 TGAAACTAAAACAAGCCCTATATGAC 57.724 34.615 0.00 0.00 0.00 3.06
416 417 4.171234 AGCCCTATATGACTATGCAACCT 58.829 43.478 0.00 0.00 0.00 3.50
418 419 4.263068 GCCCTATATGACTATGCAACCTGT 60.263 45.833 0.00 0.00 0.00 4.00
432 433 3.127030 GCAACCTGTGGTTATCTGCTAAC 59.873 47.826 1.34 0.00 45.01 2.34
435 436 3.119101 ACCTGTGGTTATCTGCTAACGAG 60.119 47.826 0.00 0.00 40.62 4.18
494 500 4.374399 AGTGTGGTTTTGTTCTAGTACGG 58.626 43.478 0.00 0.00 0.00 4.02
517 523 4.085107 GCAGTTATTGTTCGCAAAACCAAG 60.085 41.667 0.00 0.00 40.90 3.61
518 524 4.048504 AGTTATTGTTCGCAAAACCAAGC 58.951 39.130 0.00 0.00 40.90 4.01
519 525 2.593346 ATTGTTCGCAAAACCAAGCA 57.407 40.000 0.00 0.00 40.90 3.91
523 529 3.265791 TGTTCGCAAAACCAAGCAAAAT 58.734 36.364 0.00 0.00 0.00 1.82
557 563 2.952310 GTTGCCAAGAGTCCAACTTCTT 59.048 45.455 3.54 0.00 36.73 2.52
560 571 3.632145 TGCCAAGAGTCCAACTTCTTTTC 59.368 43.478 0.00 0.00 0.00 2.29
583 594 6.058183 TCCTAGAAGAGATATTGCTTTTGCC 58.942 40.000 0.00 0.00 46.87 4.52
597 608 2.142356 TTTGCCGATTGTGATCCCAT 57.858 45.000 0.00 0.00 0.00 4.00
603 614 5.569355 TGCCGATTGTGATCCCATATATTT 58.431 37.500 0.00 0.00 0.00 1.40
626 637 7.849804 TTTTATCAGAAATCTGCCTACTCAC 57.150 36.000 5.53 0.00 43.46 3.51
627 638 3.510388 TCAGAAATCTGCCTACTCACG 57.490 47.619 5.53 0.00 43.46 4.35
628 639 2.166459 TCAGAAATCTGCCTACTCACGG 59.834 50.000 5.53 0.00 43.46 4.94
660 672 0.032912 TATCACCTACCCTCGGCACA 60.033 55.000 0.00 0.00 0.00 4.57
665 677 2.920384 TACCCTCGGCACAGCACA 60.920 61.111 0.00 0.00 0.00 4.57
856 916 3.556306 CACCACCGTCCACCACCT 61.556 66.667 0.00 0.00 0.00 4.00
894 958 1.145819 CAGCTAGCTGCCCTTCCTC 59.854 63.158 30.62 0.00 44.23 3.71
896 960 2.069430 GCTAGCTGCCCTTCCTCCT 61.069 63.158 7.70 0.00 35.15 3.69
912 976 3.100671 CCTCCTCTACATATACCCAGGC 58.899 54.545 0.00 0.00 0.00 4.85
915 979 2.492484 CCTCTACATATACCCAGGCGAC 59.508 54.545 0.00 0.00 0.00 5.19
926 990 1.659794 CAGGCGACCCAACCAAAAG 59.340 57.895 0.00 0.00 0.00 2.27
927 991 0.821711 CAGGCGACCCAACCAAAAGA 60.822 55.000 0.00 0.00 0.00 2.52
928 992 0.112412 AGGCGACCCAACCAAAAGAT 59.888 50.000 0.00 0.00 0.00 2.40
929 993 0.526211 GGCGACCCAACCAAAAGATC 59.474 55.000 0.00 0.00 0.00 2.75
930 994 1.534729 GCGACCCAACCAAAAGATCT 58.465 50.000 0.00 0.00 0.00 2.75
931 995 1.468914 GCGACCCAACCAAAAGATCTC 59.531 52.381 0.00 0.00 0.00 2.75
932 996 2.778299 CGACCCAACCAAAAGATCTCA 58.222 47.619 0.00 0.00 0.00 3.27
933 997 2.484264 CGACCCAACCAAAAGATCTCAC 59.516 50.000 0.00 0.00 0.00 3.51
934 998 2.820197 GACCCAACCAAAAGATCTCACC 59.180 50.000 0.00 0.00 0.00 4.02
961 1026 2.027745 AGTCCACAATTCACATCGCTCT 60.028 45.455 0.00 0.00 0.00 4.09
973 1038 1.264749 ATCGCTCTTACCCAGCCACA 61.265 55.000 0.00 0.00 32.83 4.17
987 1056 1.444553 CCACACGCGGAGAAGAGAC 60.445 63.158 12.47 0.00 0.00 3.36
988 1057 1.444553 CACACGCGGAGAAGAGACC 60.445 63.158 12.47 0.00 0.00 3.85
1111 1180 2.304092 TCATCCTTCAGCCATGCATTC 58.696 47.619 0.00 0.00 0.00 2.67
1112 1181 2.028876 CATCCTTCAGCCATGCATTCA 58.971 47.619 0.00 0.00 0.00 2.57
1113 1182 2.447408 TCCTTCAGCCATGCATTCAT 57.553 45.000 0.00 0.00 0.00 2.57
1114 1183 3.581265 TCCTTCAGCCATGCATTCATA 57.419 42.857 0.00 0.00 0.00 2.15
1115 1184 4.108501 TCCTTCAGCCATGCATTCATAT 57.891 40.909 0.00 0.00 0.00 1.78
1118 1187 4.038763 CCTTCAGCCATGCATTCATATGTT 59.961 41.667 0.00 0.00 34.12 2.71
1120 1189 5.601583 TCAGCCATGCATTCATATGTTTT 57.398 34.783 0.00 0.00 34.12 2.43
1155 1227 0.962855 GGTGCTCTTCTCCTTTGGGC 60.963 60.000 0.00 0.00 0.00 5.36
1182 1254 2.914289 CAGGAGGTGATGGGAGGC 59.086 66.667 0.00 0.00 0.00 4.70
1183 1255 2.765807 AGGAGGTGATGGGAGGCG 60.766 66.667 0.00 0.00 0.00 5.52
1184 1256 3.866582 GGAGGTGATGGGAGGCGG 61.867 72.222 0.00 0.00 0.00 6.13
1185 1257 4.554036 GAGGTGATGGGAGGCGGC 62.554 72.222 0.00 0.00 0.00 6.53
1187 1259 4.424711 GGTGATGGGAGGCGGCAA 62.425 66.667 13.08 0.00 0.00 4.52
1188 1260 3.134127 GTGATGGGAGGCGGCAAC 61.134 66.667 13.08 4.52 0.00 4.17
1275 1368 2.175811 GCATTTCGCCGCGTTTCT 59.824 55.556 13.39 0.00 32.94 2.52
1282 1375 2.799540 CGCCGCGTTTCTTCTAGCC 61.800 63.158 4.92 0.00 0.00 3.93
1293 1386 3.703001 TCTTCTAGCCTGGTCCTTTTG 57.297 47.619 0.00 0.00 0.00 2.44
1294 1387 2.979678 TCTTCTAGCCTGGTCCTTTTGT 59.020 45.455 0.00 0.00 0.00 2.83
1594 1721 0.250684 TTCACTGCTCGGCCATCAAA 60.251 50.000 2.24 0.00 0.00 2.69
1599 1726 2.016318 CTGCTCGGCCATCAAAATGTA 58.984 47.619 2.24 0.00 0.00 2.29
1600 1727 1.742831 TGCTCGGCCATCAAAATGTAC 59.257 47.619 2.24 0.00 0.00 2.90
1601 1728 2.017049 GCTCGGCCATCAAAATGTACT 58.983 47.619 2.24 0.00 0.00 2.73
1602 1729 3.202906 GCTCGGCCATCAAAATGTACTA 58.797 45.455 2.24 0.00 0.00 1.82
1603 1730 3.002348 GCTCGGCCATCAAAATGTACTAC 59.998 47.826 2.24 0.00 0.00 2.73
1604 1731 4.188462 CTCGGCCATCAAAATGTACTACA 58.812 43.478 2.24 0.00 0.00 2.74
1605 1732 4.188462 TCGGCCATCAAAATGTACTACAG 58.812 43.478 2.24 0.00 0.00 2.74
1634 1765 7.894753 TCTGAATTATGTGATGGGCATTTAA 57.105 32.000 0.00 0.00 0.00 1.52
1635 1766 8.481492 TCTGAATTATGTGATGGGCATTTAAT 57.519 30.769 0.00 0.00 0.00 1.40
1636 1767 8.579006 TCTGAATTATGTGATGGGCATTTAATC 58.421 33.333 0.00 0.00 0.00 1.75
1637 1768 8.247666 TGAATTATGTGATGGGCATTTAATCA 57.752 30.769 0.00 0.00 0.00 2.57
1670 1801 0.117541 TGCCCTCCCAGTTACCTGTA 59.882 55.000 0.00 0.00 36.95 2.74
1703 1840 1.425066 AGATGTGGAAAACTGGAGGCA 59.575 47.619 0.00 0.00 0.00 4.75
1704 1841 1.541588 GATGTGGAAAACTGGAGGCAC 59.458 52.381 0.00 0.00 0.00 5.01
1844 1982 3.690475 TCGGCATGAATGATGAGCTAT 57.310 42.857 0.00 0.00 33.31 2.97
1878 2016 1.226379 CATGCAACGCCCGTTCATC 60.226 57.895 2.68 0.00 36.00 2.92
1903 2048 4.597079 TCTTTCGTTTTCAGATGTGCAAC 58.403 39.130 0.00 0.00 37.35 4.17
1925 2070 5.460646 ACGAGCATCTTTTGTTGTTATTGG 58.539 37.500 0.00 0.00 0.00 3.16
1944 2089 2.301346 GGTACTGAGGCCATCCAAATG 58.699 52.381 5.01 0.00 33.74 2.32
1985 2130 2.801679 CGACCACTTACCGCAGTTTTTA 59.198 45.455 0.00 0.00 0.00 1.52
1986 2131 3.248125 CGACCACTTACCGCAGTTTTTAA 59.752 43.478 0.00 0.00 0.00 1.52
2016 2161 7.391833 AGAGTCAAACCACCATATTCTCTTTTC 59.608 37.037 0.00 0.00 0.00 2.29
2028 2173 1.881973 TCTCTTTTCACTGGCATGTGC 59.118 47.619 10.87 0.00 37.81 4.57
2061 2206 4.540359 TTCAATTTTAGCCAAGCAGCAT 57.460 36.364 0.00 0.00 34.23 3.79
2088 2280 6.500910 TCTCTTTTATCTCAAATAGCGCGTA 58.499 36.000 8.43 0.00 0.00 4.42
2089 2281 6.637254 TCTCTTTTATCTCAAATAGCGCGTAG 59.363 38.462 8.43 0.00 0.00 3.51
2093 2285 1.746787 TCTCAAATAGCGCGTAGGACA 59.253 47.619 8.43 0.00 0.00 4.02
2104 2296 1.937899 GCGTAGGACACACAACAGTTT 59.062 47.619 0.00 0.00 0.00 2.66
2114 2306 1.067916 CAACAGTTTGTGGCTGGGC 59.932 57.895 0.00 0.00 38.22 5.36
2116 2308 1.394266 AACAGTTTGTGGCTGGGCAG 61.394 55.000 0.00 0.00 38.22 4.85
2128 2320 4.115199 GGGCAGCCCACTGGTAGG 62.115 72.222 27.33 0.00 44.65 3.18
2155 2347 3.685836 AAACGACTGTTTGTAAGGCAC 57.314 42.857 0.00 0.00 46.28 5.01
2156 2348 1.589803 ACGACTGTTTGTAAGGCACC 58.410 50.000 0.00 0.00 0.00 5.01
2190 2398 2.320745 AAAAGAACCCGACGAGTTGT 57.679 45.000 0.00 0.00 0.00 3.32
2196 2404 1.101331 ACCCGACGAGTTGTAGGATC 58.899 55.000 11.09 0.00 45.51 3.36
2207 2415 3.119919 AGTTGTAGGATCGAACTCACGAC 60.120 47.826 0.00 0.00 44.84 4.34
2262 2470 2.969821 ACAAATGGGTCCTGCTAACA 57.030 45.000 0.00 0.00 0.00 2.41
2263 2471 3.237268 ACAAATGGGTCCTGCTAACAA 57.763 42.857 0.00 0.00 0.00 2.83
2264 2472 2.890945 ACAAATGGGTCCTGCTAACAAC 59.109 45.455 0.00 0.00 0.00 3.32
2272 2480 1.075374 TCCTGCTAACAACCAATGGCT 59.925 47.619 0.00 0.00 0.00 4.75
2288 2496 5.398169 CAATGGCTAGTGCGAATGTTTAAA 58.602 37.500 0.00 0.00 40.82 1.52
2311 2519 8.673626 AAAAACATACTGTAGCATCAAATTCG 57.326 30.769 0.00 0.00 0.00 3.34
2312 2520 7.609760 AAACATACTGTAGCATCAAATTCGA 57.390 32.000 0.00 0.00 0.00 3.71
2313 2521 7.609760 AACATACTGTAGCATCAAATTCGAA 57.390 32.000 0.00 0.00 0.00 3.71
2314 2522 7.609760 ACATACTGTAGCATCAAATTCGAAA 57.390 32.000 0.00 0.00 0.00 3.46
2315 2523 7.464358 ACATACTGTAGCATCAAATTCGAAAC 58.536 34.615 0.00 0.00 0.00 2.78
2316 2524 5.940192 ACTGTAGCATCAAATTCGAAACA 57.060 34.783 0.00 0.00 0.00 2.83
2317 2525 6.500684 ACTGTAGCATCAAATTCGAAACAT 57.499 33.333 0.00 0.00 0.00 2.71
2318 2526 6.913170 ACTGTAGCATCAAATTCGAAACATT 58.087 32.000 0.00 0.00 0.00 2.71
2319 2527 7.370383 ACTGTAGCATCAAATTCGAAACATTT 58.630 30.769 0.00 0.00 0.00 2.32
2320 2528 7.867403 ACTGTAGCATCAAATTCGAAACATTTT 59.133 29.630 0.00 0.00 0.00 1.82
2321 2529 8.586570 TGTAGCATCAAATTCGAAACATTTTT 57.413 26.923 0.00 0.00 0.00 1.94
2380 2588 8.868522 ATTGAGAACAACTGAATATTCTTGGA 57.131 30.769 16.24 0.00 38.90 3.53
2381 2589 8.690203 TTGAGAACAACTGAATATTCTTGGAA 57.310 30.769 16.24 0.00 31.58 3.53
2382 2590 8.690203 TGAGAACAACTGAATATTCTTGGAAA 57.310 30.769 16.24 0.00 31.58 3.13
2383 2591 8.567948 TGAGAACAACTGAATATTCTTGGAAAC 58.432 33.333 16.24 7.93 31.58 2.78
2384 2592 8.463930 AGAACAACTGAATATTCTTGGAAACA 57.536 30.769 16.24 0.00 39.83 2.83
2385 2593 9.082313 AGAACAACTGAATATTCTTGGAAACAT 57.918 29.630 16.24 0.00 42.32 2.71
2386 2594 9.132521 GAACAACTGAATATTCTTGGAAACATG 57.867 33.333 16.24 0.00 42.32 3.21
2387 2595 8.408043 ACAACTGAATATTCTTGGAAACATGA 57.592 30.769 16.24 0.00 42.32 3.07
2388 2596 9.028284 ACAACTGAATATTCTTGGAAACATGAT 57.972 29.630 16.24 0.00 43.21 2.45
2389 2597 9.865321 CAACTGAATATTCTTGGAAACATGATT 57.135 29.630 16.24 0.00 43.21 2.57
2405 2613 9.971744 GAAACATGATTTATTTTTGAAATCCCG 57.028 29.630 0.00 0.86 40.91 5.14
2406 2614 9.717942 AAACATGATTTATTTTTGAAATCCCGA 57.282 25.926 0.00 0.00 40.91 5.14
2407 2615 8.702163 ACATGATTTATTTTTGAAATCCCGAC 57.298 30.769 0.00 0.00 40.91 4.79
2408 2616 8.310382 ACATGATTTATTTTTGAAATCCCGACA 58.690 29.630 0.00 0.00 40.91 4.35
2409 2617 9.316730 CATGATTTATTTTTGAAATCCCGACAT 57.683 29.630 5.83 0.00 40.91 3.06
2410 2618 9.889128 ATGATTTATTTTTGAAATCCCGACATT 57.111 25.926 5.83 0.00 40.91 2.71
2411 2619 9.717942 TGATTTATTTTTGAAATCCCGACATTT 57.282 25.926 5.83 0.00 40.91 2.32
2415 2623 9.547753 TTATTTTTGAAATCCCGACATTTTTCA 57.452 25.926 0.00 0.00 36.56 2.69
2416 2624 7.849804 TTTTTGAAATCCCGACATTTTTCAA 57.150 28.000 5.77 5.77 42.90 2.69
2418 2626 7.849804 TTTGAAATCCCGACATTTTTCAAAA 57.150 28.000 15.91 4.75 46.64 2.44
2419 2627 7.475771 TTGAAATCCCGACATTTTTCAAAAG 57.524 32.000 7.09 0.00 42.13 2.27
2420 2628 6.578023 TGAAATCCCGACATTTTTCAAAAGT 58.422 32.000 0.00 0.00 35.71 2.66
2421 2629 6.478344 TGAAATCCCGACATTTTTCAAAAGTG 59.522 34.615 3.92 3.92 35.71 3.16
2422 2630 3.712187 TCCCGACATTTTTCAAAAGTGC 58.288 40.909 5.33 0.00 0.00 4.40
2423 2631 2.470999 CCCGACATTTTTCAAAAGTGCG 59.529 45.455 5.33 9.42 0.00 5.34
2424 2632 3.367607 CCGACATTTTTCAAAAGTGCGA 58.632 40.909 17.43 0.00 0.00 5.10
2425 2633 3.179599 CCGACATTTTTCAAAAGTGCGAC 59.820 43.478 17.43 6.03 0.00 5.19
2426 2634 3.179599 CGACATTTTTCAAAAGTGCGACC 59.820 43.478 13.20 0.00 0.00 4.79
2427 2635 4.109050 GACATTTTTCAAAAGTGCGACCA 58.891 39.130 5.33 0.00 0.00 4.02
2428 2636 4.111916 ACATTTTTCAAAAGTGCGACCAG 58.888 39.130 5.33 0.00 0.00 4.00
2429 2637 4.142271 ACATTTTTCAAAAGTGCGACCAGA 60.142 37.500 5.33 0.00 0.00 3.86
2430 2638 4.442375 TTTTTCAAAAGTGCGACCAGAA 57.558 36.364 0.00 0.00 0.00 3.02
2431 2639 4.442375 TTTTCAAAAGTGCGACCAGAAA 57.558 36.364 0.00 0.00 0.00 2.52
2432 2640 4.442375 TTTCAAAAGTGCGACCAGAAAA 57.558 36.364 0.00 0.00 0.00 2.29
2433 2641 4.442375 TTCAAAAGTGCGACCAGAAAAA 57.558 36.364 0.00 0.00 0.00 1.94
2434 2642 4.647424 TCAAAAGTGCGACCAGAAAAAT 57.353 36.364 0.00 0.00 0.00 1.82
2435 2643 5.004922 TCAAAAGTGCGACCAGAAAAATT 57.995 34.783 0.00 0.00 0.00 1.82
2436 2644 5.040635 TCAAAAGTGCGACCAGAAAAATTC 58.959 37.500 0.00 0.00 0.00 2.17
2437 2645 3.643159 AAGTGCGACCAGAAAAATTCC 57.357 42.857 0.00 0.00 0.00 3.01
2438 2646 1.535462 AGTGCGACCAGAAAAATTCCG 59.465 47.619 0.00 0.00 0.00 4.30
2439 2647 1.265905 GTGCGACCAGAAAAATTCCGT 59.734 47.619 0.00 0.00 0.00 4.69
2440 2648 1.950909 TGCGACCAGAAAAATTCCGTT 59.049 42.857 0.00 0.00 0.00 4.44
2441 2649 2.287308 TGCGACCAGAAAAATTCCGTTG 60.287 45.455 0.00 0.00 0.00 4.10
2442 2650 2.031508 GCGACCAGAAAAATTCCGTTGA 60.032 45.455 0.00 0.00 0.00 3.18
2443 2651 3.365969 GCGACCAGAAAAATTCCGTTGAT 60.366 43.478 0.00 0.00 0.00 2.57
2444 2652 4.794169 CGACCAGAAAAATTCCGTTGATT 58.206 39.130 0.00 0.00 0.00 2.57
2445 2653 5.219633 CGACCAGAAAAATTCCGTTGATTT 58.780 37.500 0.00 0.00 0.00 2.17
2446 2654 5.689961 CGACCAGAAAAATTCCGTTGATTTT 59.310 36.000 0.00 0.00 0.00 1.82
2447 2655 6.200097 CGACCAGAAAAATTCCGTTGATTTTT 59.800 34.615 10.98 10.98 39.36 1.94
2448 2656 7.245419 ACCAGAAAAATTCCGTTGATTTTTG 57.755 32.000 14.23 5.87 37.54 2.44
2449 2657 6.259829 ACCAGAAAAATTCCGTTGATTTTTGG 59.740 34.615 14.23 13.29 37.54 3.28
2450 2658 6.481644 CCAGAAAAATTCCGTTGATTTTTGGA 59.518 34.615 14.23 0.00 37.54 3.53
2451 2659 7.011857 CCAGAAAAATTCCGTTGATTTTTGGAA 59.988 33.333 14.23 0.00 44.06 3.53
2452 2660 8.394121 CAGAAAAATTCCGTTGATTTTTGGAAA 58.606 29.630 14.23 0.00 43.24 3.13
2453 2661 8.951243 AGAAAAATTCCGTTGATTTTTGGAAAA 58.049 25.926 14.23 0.00 43.24 2.29
2454 2662 9.561270 GAAAAATTCCGTTGATTTTTGGAAAAA 57.439 25.926 14.23 0.00 43.24 1.94
2455 2663 9.566530 AAAAATTCCGTTGATTTTTGGAAAAAG 57.433 25.926 10.59 0.00 43.24 2.27
2456 2664 8.499403 AAATTCCGTTGATTTTTGGAAAAAGA 57.501 26.923 3.83 0.00 43.24 2.52
2457 2665 6.895607 TTCCGTTGATTTTTGGAAAAAGAC 57.104 33.333 3.83 1.98 40.78 3.01
2458 2666 5.967088 TCCGTTGATTTTTGGAAAAAGACA 58.033 33.333 3.83 4.11 40.78 3.41
2459 2667 6.398918 TCCGTTGATTTTTGGAAAAAGACAA 58.601 32.000 12.07 12.07 40.78 3.18
2460 2668 6.874134 TCCGTTGATTTTTGGAAAAAGACAAA 59.126 30.769 15.21 0.00 40.78 2.83
2461 2669 6.958752 CCGTTGATTTTTGGAAAAAGACAAAC 59.041 34.615 15.21 10.25 40.78 2.93
2462 2670 7.360438 CCGTTGATTTTTGGAAAAAGACAAACA 60.360 33.333 15.21 0.00 40.78 2.83
2463 2671 8.012241 CGTTGATTTTTGGAAAAAGACAAACAA 58.988 29.630 15.21 0.00 40.78 2.83
2464 2672 9.670719 GTTGATTTTTGGAAAAAGACAAACAAA 57.329 25.926 15.21 0.00 40.78 2.83
2480 2688 9.820725 AGACAAACAAAATTTGAATCTGAATGA 57.179 25.926 13.19 0.00 33.83 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.251832 TATCTCCGGCCCTCTCCATC 60.252 60.000 0.00 0.00 0.00 3.51
2 3 0.031515 TTTATCTCCGGCCCTCTCCA 60.032 55.000 0.00 0.00 0.00 3.86
3 4 1.353091 ATTTATCTCCGGCCCTCTCC 58.647 55.000 0.00 0.00 0.00 3.71
4 5 3.056465 CACTATTTATCTCCGGCCCTCTC 60.056 52.174 0.00 0.00 0.00 3.20
5 6 2.900546 CACTATTTATCTCCGGCCCTCT 59.099 50.000 0.00 0.00 0.00 3.69
6 7 2.633481 ACACTATTTATCTCCGGCCCTC 59.367 50.000 0.00 0.00 0.00 4.30
7 8 2.690840 ACACTATTTATCTCCGGCCCT 58.309 47.619 0.00 0.00 0.00 5.19
8 9 3.139077 CAACACTATTTATCTCCGGCCC 58.861 50.000 0.00 0.00 0.00 5.80
9 10 3.139077 CCAACACTATTTATCTCCGGCC 58.861 50.000 0.00 0.00 0.00 6.13
10 11 3.139077 CCCAACACTATTTATCTCCGGC 58.861 50.000 0.00 0.00 0.00 6.13
11 12 4.127171 CACCCAACACTATTTATCTCCGG 58.873 47.826 0.00 0.00 0.00 5.14
12 13 3.560068 GCACCCAACACTATTTATCTCCG 59.440 47.826 0.00 0.00 0.00 4.63
13 14 3.883489 GGCACCCAACACTATTTATCTCC 59.117 47.826 0.00 0.00 0.00 3.71
14 15 4.781934 AGGCACCCAACACTATTTATCTC 58.218 43.478 0.00 0.00 0.00 2.75
15 16 4.862641 AGGCACCCAACACTATTTATCT 57.137 40.909 0.00 0.00 0.00 1.98
16 17 5.914898 AAAGGCACCCAACACTATTTATC 57.085 39.130 0.00 0.00 0.00 1.75
17 18 6.895204 ACATAAAGGCACCCAACACTATTTAT 59.105 34.615 0.00 0.00 0.00 1.40
18 19 6.249951 ACATAAAGGCACCCAACACTATTTA 58.750 36.000 0.00 0.00 0.00 1.40
19 20 5.083821 ACATAAAGGCACCCAACACTATTT 58.916 37.500 0.00 0.00 0.00 1.40
20 21 4.672899 ACATAAAGGCACCCAACACTATT 58.327 39.130 0.00 0.00 0.00 1.73
21 22 4.316025 ACATAAAGGCACCCAACACTAT 57.684 40.909 0.00 0.00 0.00 2.12
22 23 3.799432 ACATAAAGGCACCCAACACTA 57.201 42.857 0.00 0.00 0.00 2.74
23 24 2.675658 ACATAAAGGCACCCAACACT 57.324 45.000 0.00 0.00 0.00 3.55
24 25 4.270008 AGATACATAAAGGCACCCAACAC 58.730 43.478 0.00 0.00 0.00 3.32
25 26 4.584638 AGATACATAAAGGCACCCAACA 57.415 40.909 0.00 0.00 0.00 3.33
26 27 5.193679 AGAAGATACATAAAGGCACCCAAC 58.806 41.667 0.00 0.00 0.00 3.77
27 28 5.437060 GAGAAGATACATAAAGGCACCCAA 58.563 41.667 0.00 0.00 0.00 4.12
28 29 4.141482 GGAGAAGATACATAAAGGCACCCA 60.141 45.833 0.00 0.00 0.00 4.51
29 30 4.141482 TGGAGAAGATACATAAAGGCACCC 60.141 45.833 0.00 0.00 0.00 4.61
30 31 5.036117 TGGAGAAGATACATAAAGGCACC 57.964 43.478 0.00 0.00 0.00 5.01
31 32 7.573968 ATTTGGAGAAGATACATAAAGGCAC 57.426 36.000 0.00 0.00 0.00 5.01
32 33 9.693739 TTTATTTGGAGAAGATACATAAAGGCA 57.306 29.630 0.00 0.00 0.00 4.75
40 41 9.605275 CTCAGACATTTATTTGGAGAAGATACA 57.395 33.333 0.00 0.00 0.00 2.29
41 42 9.823647 TCTCAGACATTTATTTGGAGAAGATAC 57.176 33.333 0.00 0.00 0.00 2.24
43 44 9.339850 CATCTCAGACATTTATTTGGAGAAGAT 57.660 33.333 0.00 0.00 34.06 2.40
44 45 7.772292 CCATCTCAGACATTTATTTGGAGAAGA 59.228 37.037 0.00 0.00 34.06 2.87
45 46 7.013083 CCCATCTCAGACATTTATTTGGAGAAG 59.987 40.741 0.00 0.00 34.06 2.85
46 47 6.830324 CCCATCTCAGACATTTATTTGGAGAA 59.170 38.462 0.00 0.00 34.06 2.87
47 48 6.158520 TCCCATCTCAGACATTTATTTGGAGA 59.841 38.462 0.00 0.00 34.77 3.71
48 49 6.359804 TCCCATCTCAGACATTTATTTGGAG 58.640 40.000 0.00 0.00 0.00 3.86
49 50 6.325993 TCCCATCTCAGACATTTATTTGGA 57.674 37.500 0.00 0.00 0.00 3.53
50 51 5.009410 GCTCCCATCTCAGACATTTATTTGG 59.991 44.000 0.00 0.00 0.00 3.28
51 52 5.277683 CGCTCCCATCTCAGACATTTATTTG 60.278 44.000 0.00 0.00 0.00 2.32
52 53 4.818546 CGCTCCCATCTCAGACATTTATTT 59.181 41.667 0.00 0.00 0.00 1.40
53 54 4.384056 CGCTCCCATCTCAGACATTTATT 58.616 43.478 0.00 0.00 0.00 1.40
54 55 3.244353 CCGCTCCCATCTCAGACATTTAT 60.244 47.826 0.00 0.00 0.00 1.40
55 56 2.103094 CCGCTCCCATCTCAGACATTTA 59.897 50.000 0.00 0.00 0.00 1.40
56 57 1.134280 CCGCTCCCATCTCAGACATTT 60.134 52.381 0.00 0.00 0.00 2.32
57 58 0.467384 CCGCTCCCATCTCAGACATT 59.533 55.000 0.00 0.00 0.00 2.71
58 59 2.037620 GCCGCTCCCATCTCAGACAT 62.038 60.000 0.00 0.00 0.00 3.06
59 60 2.725312 GCCGCTCCCATCTCAGACA 61.725 63.158 0.00 0.00 0.00 3.41
60 61 2.107953 GCCGCTCCCATCTCAGAC 59.892 66.667 0.00 0.00 0.00 3.51
61 62 3.157252 GGCCGCTCCCATCTCAGA 61.157 66.667 0.00 0.00 0.00 3.27
75 76 2.764637 ATTGAACCGAGGTGTGGGCC 62.765 60.000 0.00 0.00 0.00 5.80
76 77 1.303317 ATTGAACCGAGGTGTGGGC 60.303 57.895 0.00 0.00 0.00 5.36
77 78 1.586154 GCATTGAACCGAGGTGTGGG 61.586 60.000 0.00 0.00 0.00 4.61
78 79 1.586154 GGCATTGAACCGAGGTGTGG 61.586 60.000 0.00 0.00 0.00 4.17
79 80 1.586154 GGGCATTGAACCGAGGTGTG 61.586 60.000 0.00 0.00 0.00 3.82
80 81 1.303317 GGGCATTGAACCGAGGTGT 60.303 57.895 0.00 0.00 0.00 4.16
81 82 2.046285 GGGGCATTGAACCGAGGTG 61.046 63.158 0.00 0.00 0.00 4.00
82 83 2.355115 GGGGCATTGAACCGAGGT 59.645 61.111 0.00 0.00 0.00 3.85
88 89 4.759205 AGGGGCGGGGCATTGAAC 62.759 66.667 0.00 0.00 0.00 3.18
89 90 4.757355 CAGGGGCGGGGCATTGAA 62.757 66.667 0.00 0.00 0.00 2.69
112 113 1.227764 ATGCGCAGTAGATGGCCTG 60.228 57.895 18.32 0.00 0.00 4.85
113 114 1.227764 CATGCGCAGTAGATGGCCT 60.228 57.895 18.32 0.00 0.00 5.19
114 115 1.502163 GACATGCGCAGTAGATGGCC 61.502 60.000 18.32 0.00 0.00 5.36
115 116 0.811219 TGACATGCGCAGTAGATGGC 60.811 55.000 18.32 12.06 0.00 4.40
116 117 1.215244 CTGACATGCGCAGTAGATGG 58.785 55.000 18.32 1.40 0.00 3.51
117 118 1.931906 ACTGACATGCGCAGTAGATG 58.068 50.000 18.32 11.70 44.27 2.90
118 119 2.274437 CAACTGACATGCGCAGTAGAT 58.726 47.619 18.32 3.10 45.27 1.98
119 120 1.000843 ACAACTGACATGCGCAGTAGA 59.999 47.619 18.32 0.00 45.27 2.59
120 121 1.432514 ACAACTGACATGCGCAGTAG 58.567 50.000 18.32 13.37 45.27 2.57
121 122 2.734276 TACAACTGACATGCGCAGTA 57.266 45.000 18.32 7.03 45.27 2.74
123 124 2.967459 TTTACAACTGACATGCGCAG 57.033 45.000 18.32 10.85 39.26 5.18
124 125 3.699779 TTTTTACAACTGACATGCGCA 57.300 38.095 14.96 14.96 0.00 6.09
125 126 4.259734 CGTATTTTTACAACTGACATGCGC 59.740 41.667 0.00 0.00 0.00 6.09
126 127 4.259734 GCGTATTTTTACAACTGACATGCG 59.740 41.667 0.00 0.00 0.00 4.73
127 128 5.150683 TGCGTATTTTTACAACTGACATGC 58.849 37.500 0.00 0.00 0.00 4.06
128 129 5.283717 GCTGCGTATTTTTACAACTGACATG 59.716 40.000 0.00 0.00 0.00 3.21
129 130 5.181245 AGCTGCGTATTTTTACAACTGACAT 59.819 36.000 0.00 0.00 0.00 3.06
130 131 4.513692 AGCTGCGTATTTTTACAACTGACA 59.486 37.500 0.00 0.00 0.00 3.58
131 132 5.030874 AGCTGCGTATTTTTACAACTGAC 57.969 39.130 0.00 0.00 0.00 3.51
132 133 6.978343 ATAGCTGCGTATTTTTACAACTGA 57.022 33.333 0.00 0.00 0.00 3.41
133 134 7.680982 TGTATAGCTGCGTATTTTTACAACTG 58.319 34.615 0.00 0.00 0.00 3.16
134 135 7.762615 TCTGTATAGCTGCGTATTTTTACAACT 59.237 33.333 0.00 0.00 0.00 3.16
135 136 7.902032 TCTGTATAGCTGCGTATTTTTACAAC 58.098 34.615 0.00 0.00 0.00 3.32
136 137 8.657074 ATCTGTATAGCTGCGTATTTTTACAA 57.343 30.769 0.00 0.00 0.00 2.41
137 138 8.547894 CAATCTGTATAGCTGCGTATTTTTACA 58.452 33.333 0.00 0.00 0.00 2.41
138 139 8.548721 ACAATCTGTATAGCTGCGTATTTTTAC 58.451 33.333 0.00 0.00 0.00 2.01
139 140 8.657074 ACAATCTGTATAGCTGCGTATTTTTA 57.343 30.769 0.00 0.00 0.00 1.52
140 141 7.553881 ACAATCTGTATAGCTGCGTATTTTT 57.446 32.000 0.00 0.00 0.00 1.94
141 142 7.553881 AACAATCTGTATAGCTGCGTATTTT 57.446 32.000 0.00 0.00 0.00 1.82
142 143 8.833231 ATAACAATCTGTATAGCTGCGTATTT 57.167 30.769 0.00 0.00 0.00 1.40
144 145 9.521503 CATATAACAATCTGTATAGCTGCGTAT 57.478 33.333 0.00 0.00 0.00 3.06
145 146 7.973944 CCATATAACAATCTGTATAGCTGCGTA 59.026 37.037 0.00 0.00 0.00 4.42
146 147 6.813649 CCATATAACAATCTGTATAGCTGCGT 59.186 38.462 0.00 0.00 0.00 5.24
147 148 6.256539 CCCATATAACAATCTGTATAGCTGCG 59.743 42.308 0.00 0.00 0.00 5.18
148 149 6.540189 CCCCATATAACAATCTGTATAGCTGC 59.460 42.308 0.00 0.00 0.00 5.25
149 150 7.050377 CCCCCATATAACAATCTGTATAGCTG 58.950 42.308 0.00 0.00 0.00 4.24
150 151 6.735704 ACCCCCATATAACAATCTGTATAGCT 59.264 38.462 0.00 0.00 0.00 3.32
151 152 6.958767 ACCCCCATATAACAATCTGTATAGC 58.041 40.000 0.00 0.00 0.00 2.97
152 153 8.602424 TCAACCCCCATATAACAATCTGTATAG 58.398 37.037 0.00 0.00 0.00 1.31
153 154 8.513139 TCAACCCCCATATAACAATCTGTATA 57.487 34.615 0.00 0.00 0.00 1.47
154 155 7.401060 TCAACCCCCATATAACAATCTGTAT 57.599 36.000 0.00 0.00 0.00 2.29
155 156 6.833346 TCAACCCCCATATAACAATCTGTA 57.167 37.500 0.00 0.00 0.00 2.74
156 157 5.725551 TCAACCCCCATATAACAATCTGT 57.274 39.130 0.00 0.00 0.00 3.41
157 158 7.287466 TGATTTCAACCCCCATATAACAATCTG 59.713 37.037 0.00 0.00 0.00 2.90
158 159 7.361438 TGATTTCAACCCCCATATAACAATCT 58.639 34.615 0.00 0.00 0.00 2.40
159 160 7.595819 TGATTTCAACCCCCATATAACAATC 57.404 36.000 0.00 0.00 0.00 2.67
160 161 8.565780 AATGATTTCAACCCCCATATAACAAT 57.434 30.769 0.00 0.00 0.00 2.71
161 162 7.986553 AATGATTTCAACCCCCATATAACAA 57.013 32.000 0.00 0.00 0.00 2.83
164 165 9.456147 CGTATAATGATTTCAACCCCCATATAA 57.544 33.333 0.00 0.00 0.00 0.98
165 166 8.050325 CCGTATAATGATTTCAACCCCCATATA 58.950 37.037 0.00 0.00 0.00 0.86
166 167 6.889722 CCGTATAATGATTTCAACCCCCATAT 59.110 38.462 0.00 0.00 0.00 1.78
167 168 6.242396 CCGTATAATGATTTCAACCCCCATA 58.758 40.000 0.00 0.00 0.00 2.74
168 169 5.076873 CCGTATAATGATTTCAACCCCCAT 58.923 41.667 0.00 0.00 0.00 4.00
169 170 4.465886 CCGTATAATGATTTCAACCCCCA 58.534 43.478 0.00 0.00 0.00 4.96
170 171 3.254903 GCCGTATAATGATTTCAACCCCC 59.745 47.826 0.00 0.00 0.00 5.40
171 172 4.142038 AGCCGTATAATGATTTCAACCCC 58.858 43.478 0.00 0.00 0.00 4.95
172 173 4.819630 TGAGCCGTATAATGATTTCAACCC 59.180 41.667 0.00 0.00 0.00 4.11
173 174 5.558273 CGTGAGCCGTATAATGATTTCAACC 60.558 44.000 0.00 0.00 0.00 3.77
174 175 5.432157 CGTGAGCCGTATAATGATTTCAAC 58.568 41.667 0.00 0.00 0.00 3.18
175 176 5.651172 CGTGAGCCGTATAATGATTTCAA 57.349 39.130 0.00 0.00 0.00 2.69
192 193 1.459209 TGCAACTTCAATACGCGTGAG 59.541 47.619 24.59 11.62 0.00 3.51
193 194 1.193650 GTGCAACTTCAATACGCGTGA 59.806 47.619 24.59 8.10 0.00 4.35
194 195 1.591248 GTGCAACTTCAATACGCGTG 58.409 50.000 24.59 5.23 0.00 5.34
195 196 0.162933 CGTGCAACTTCAATACGCGT 59.837 50.000 19.17 19.17 31.75 6.01
196 197 0.436913 TCGTGCAACTTCAATACGCG 59.563 50.000 3.53 3.53 34.98 6.01
197 198 2.587612 TTCGTGCAACTTCAATACGC 57.412 45.000 0.00 0.00 34.98 4.42
198 199 4.081761 GTGATTCGTGCAACTTCAATACG 58.918 43.478 0.00 0.00 36.20 3.06
199 200 4.081761 CGTGATTCGTGCAACTTCAATAC 58.918 43.478 0.00 0.00 34.52 1.89
200 201 3.424302 GCGTGATTCGTGCAACTTCAATA 60.424 43.478 0.00 0.00 42.13 1.90
201 202 2.665519 GCGTGATTCGTGCAACTTCAAT 60.666 45.455 0.00 0.00 42.13 2.57
202 203 1.333702 GCGTGATTCGTGCAACTTCAA 60.334 47.619 0.00 0.00 42.13 2.69
203 204 0.234625 GCGTGATTCGTGCAACTTCA 59.765 50.000 0.00 0.00 42.13 3.02
204 205 0.785708 CGCGTGATTCGTGCAACTTC 60.786 55.000 0.00 0.00 42.93 3.01
205 206 1.204062 CGCGTGATTCGTGCAACTT 59.796 52.632 0.00 0.00 42.93 2.66
206 207 2.853210 CGCGTGATTCGTGCAACT 59.147 55.556 0.00 0.00 42.93 3.16
212 213 1.545759 CATGTACTCGCGTGATTCGT 58.454 50.000 16.04 0.00 42.13 3.85
213 214 0.227234 GCATGTACTCGCGTGATTCG 59.773 55.000 16.04 0.53 43.12 3.34
214 215 0.227234 CGCATGTACTCGCGTGATTC 59.773 55.000 16.04 5.28 46.23 2.52
215 216 2.288013 CGCATGTACTCGCGTGATT 58.712 52.632 16.04 0.00 46.23 2.57
216 217 3.997561 CGCATGTACTCGCGTGAT 58.002 55.556 16.04 1.96 46.23 3.06
221 222 2.452813 CCACACCGCATGTACTCGC 61.453 63.158 0.00 0.00 40.64 5.03
222 223 0.179111 ATCCACACCGCATGTACTCG 60.179 55.000 0.00 0.00 40.64 4.18
223 224 2.470821 GTATCCACACCGCATGTACTC 58.529 52.381 0.00 0.00 40.64 2.59
224 225 1.138266 GGTATCCACACCGCATGTACT 59.862 52.381 0.00 0.00 40.64 2.73
225 226 1.134640 TGGTATCCACACCGCATGTAC 60.135 52.381 0.00 0.00 40.64 2.90
226 227 1.138069 CTGGTATCCACACCGCATGTA 59.862 52.381 0.00 0.00 40.64 2.29
227 228 0.107703 CTGGTATCCACACCGCATGT 60.108 55.000 0.00 0.00 44.81 3.21
228 229 1.439353 GCTGGTATCCACACCGCATG 61.439 60.000 0.00 0.00 41.88 4.06
229 230 1.153168 GCTGGTATCCACACCGCAT 60.153 57.895 0.00 0.00 41.88 4.73
230 231 2.267642 GCTGGTATCCACACCGCA 59.732 61.111 0.00 0.00 41.88 5.69
231 232 2.513897 GGCTGGTATCCACACCGC 60.514 66.667 0.00 0.00 41.88 5.68
232 233 2.202878 CGGCTGGTATCCACACCG 60.203 66.667 9.89 9.89 41.88 4.94
233 234 2.513897 GCGGCTGGTATCCACACC 60.514 66.667 0.00 0.00 39.20 4.16
234 235 2.890474 CGCGGCTGGTATCCACAC 60.890 66.667 0.00 0.00 0.00 3.82
235 236 4.830765 GCGCGGCTGGTATCCACA 62.831 66.667 8.83 0.00 0.00 4.17
259 260 3.621794 GAATAATCGCAAGTGGACATGC 58.378 45.455 0.00 0.00 37.23 4.06
260 261 3.865329 CGAATAATCGCAAGTGGACATG 58.135 45.455 0.00 0.00 42.96 3.21
275 276 9.720667 ACGTATATATAGCAATAACGCGAATAA 57.279 29.630 15.93 0.00 36.85 1.40
277 278 9.162793 GTACGTATATATAGCAATAACGCGAAT 57.837 33.333 15.93 2.32 36.85 3.34
278 279 8.174422 TGTACGTATATATAGCAATAACGCGAA 58.826 33.333 15.93 0.00 36.85 4.70
279 280 7.683746 TGTACGTATATATAGCAATAACGCGA 58.316 34.615 15.93 0.00 36.85 5.87
280 281 7.881516 TGTACGTATATATAGCAATAACGCG 57.118 36.000 3.53 3.53 36.85 6.01
281 282 9.877096 GTTTGTACGTATATATAGCAATAACGC 57.123 33.333 0.00 0.00 0.00 4.84
288 289 9.836076 GTCATGAGTTTGTACGTATATATAGCA 57.164 33.333 0.00 0.00 0.00 3.49
289 290 9.836076 TGTCATGAGTTTGTACGTATATATAGC 57.164 33.333 0.00 0.00 0.00 2.97
296 297 9.378551 ACATAATTGTCATGAGTTTGTACGTAT 57.621 29.630 0.00 0.00 0.00 3.06
297 298 8.766000 ACATAATTGTCATGAGTTTGTACGTA 57.234 30.769 0.00 0.00 0.00 3.57
298 299 7.667043 ACATAATTGTCATGAGTTTGTACGT 57.333 32.000 0.00 0.00 0.00 3.57
299 300 9.849607 GATACATAATTGTCATGAGTTTGTACG 57.150 33.333 0.00 0.00 37.28 3.67
306 307 9.230122 TGTTGTTGATACATAATTGTCATGAGT 57.770 29.630 0.00 0.00 37.28 3.41
358 359 3.818773 TCTGTAGCAAAGTTTTACTGGGC 59.181 43.478 0.00 0.00 0.00 5.36
362 363 8.451908 AGTTTCATCTGTAGCAAAGTTTTACT 57.548 30.769 0.00 0.00 0.00 2.24
382 383 8.507524 AGTCATATAGGGCTTGTTTTAGTTTC 57.492 34.615 0.00 0.00 0.00 2.78
401 402 4.568072 AACCACAGGTTGCATAGTCATA 57.432 40.909 0.00 0.00 45.07 2.15
406 407 3.313526 GCAGATAACCACAGGTTGCATAG 59.686 47.826 11.51 0.01 46.35 2.23
470 476 5.295045 CCGTACTAGAACAAAACCACACTTT 59.705 40.000 0.00 0.00 0.00 2.66
494 500 3.376540 TGGTTTTGCGAACAATAACTGC 58.623 40.909 5.32 0.00 35.21 4.40
517 523 4.724602 GCAACGCCAACATTCATATTTTGC 60.725 41.667 0.00 0.00 0.00 3.68
518 524 4.884707 GCAACGCCAACATTCATATTTTG 58.115 39.130 0.00 0.00 0.00 2.44
557 563 7.067494 GGCAAAAGCAATATCTCTTCTAGGAAA 59.933 37.037 0.00 0.00 0.00 3.13
560 571 5.049818 CGGCAAAAGCAATATCTCTTCTAGG 60.050 44.000 0.00 0.00 0.00 3.02
573 584 2.352617 GGATCACAATCGGCAAAAGCAA 60.353 45.455 0.00 0.00 32.24 3.91
575 586 1.469767 GGGATCACAATCGGCAAAAGC 60.470 52.381 0.00 0.00 32.24 3.51
576 587 1.818060 TGGGATCACAATCGGCAAAAG 59.182 47.619 0.00 0.00 32.24 2.27
603 614 6.042777 CGTGAGTAGGCAGATTTCTGATAAA 58.957 40.000 11.70 0.00 46.59 1.40
622 633 4.274214 TGATACTATAACCGTGACCGTGAG 59.726 45.833 0.00 0.00 0.00 3.51
623 634 4.035558 GTGATACTATAACCGTGACCGTGA 59.964 45.833 0.00 0.00 0.00 4.35
624 635 4.285292 GTGATACTATAACCGTGACCGTG 58.715 47.826 0.00 0.00 0.00 4.94
625 636 3.316308 GGTGATACTATAACCGTGACCGT 59.684 47.826 0.00 0.00 0.00 4.83
626 637 3.567164 AGGTGATACTATAACCGTGACCG 59.433 47.826 0.00 0.00 38.95 4.79
627 638 5.048434 GGTAGGTGATACTATAACCGTGACC 60.048 48.000 7.90 7.90 38.95 4.02
628 639 5.048434 GGGTAGGTGATACTATAACCGTGAC 60.048 48.000 0.00 0.00 38.95 3.67
877 937 2.069430 GGAGGAAGGGCAGCTAGCT 61.069 63.158 12.68 12.68 44.79 3.32
878 938 2.038814 GAGGAGGAAGGGCAGCTAGC 62.039 65.000 6.62 6.62 44.65 3.42
879 939 0.398381 AGAGGAGGAAGGGCAGCTAG 60.398 60.000 0.00 0.00 0.00 3.42
880 940 0.934446 TAGAGGAGGAAGGGCAGCTA 59.066 55.000 0.00 0.00 0.00 3.32
894 958 2.492484 GTCGCCTGGGTATATGTAGAGG 59.508 54.545 0.00 0.00 0.00 3.69
896 960 2.522185 GGTCGCCTGGGTATATGTAGA 58.478 52.381 0.00 0.00 0.00 2.59
912 976 2.484264 GTGAGATCTTTTGGTTGGGTCG 59.516 50.000 0.00 0.00 0.00 4.79
915 979 3.084786 GAGGTGAGATCTTTTGGTTGGG 58.915 50.000 0.00 0.00 0.00 4.12
926 990 2.828520 TGTGGACTTGAGAGGTGAGATC 59.171 50.000 0.00 0.00 0.00 2.75
927 991 2.894731 TGTGGACTTGAGAGGTGAGAT 58.105 47.619 0.00 0.00 0.00 2.75
928 992 2.381752 TGTGGACTTGAGAGGTGAGA 57.618 50.000 0.00 0.00 0.00 3.27
929 993 3.692257 ATTGTGGACTTGAGAGGTGAG 57.308 47.619 0.00 0.00 0.00 3.51
930 994 3.390967 TGAATTGTGGACTTGAGAGGTGA 59.609 43.478 0.00 0.00 0.00 4.02
931 995 3.499918 GTGAATTGTGGACTTGAGAGGTG 59.500 47.826 0.00 0.00 0.00 4.00
932 996 3.136443 TGTGAATTGTGGACTTGAGAGGT 59.864 43.478 0.00 0.00 0.00 3.85
933 997 3.743521 TGTGAATTGTGGACTTGAGAGG 58.256 45.455 0.00 0.00 0.00 3.69
934 998 4.092529 CGATGTGAATTGTGGACTTGAGAG 59.907 45.833 0.00 0.00 0.00 3.20
961 1026 4.690719 CCGCGTGTGGCTGGGTAA 62.691 66.667 4.92 0.00 40.44 2.85
973 1038 2.282958 TGGGTCTCTTCTCCGCGT 60.283 61.111 4.92 0.00 0.00 6.01
1120 1189 1.961793 CACCGGTGAGTGAAGGAAAA 58.038 50.000 31.31 0.00 40.34 2.29
1127 1196 0.827925 AGAAGAGCACCGGTGAGTGA 60.828 55.000 38.30 0.00 40.34 3.41
1128 1197 0.389166 GAGAAGAGCACCGGTGAGTG 60.389 60.000 38.30 12.59 40.88 3.51
1258 1351 1.395805 GAAGAAACGCGGCGAAATGC 61.396 55.000 30.94 13.07 45.38 3.56
1264 1357 2.695646 GCTAGAAGAAACGCGGCG 59.304 61.111 22.36 22.36 0.00 6.46
1275 1368 3.876309 AACAAAAGGACCAGGCTAGAA 57.124 42.857 0.00 0.00 0.00 2.10
1317 1410 1.590259 CACAAACGCCCCCAAAACG 60.590 57.895 0.00 0.00 0.00 3.60
1600 1727 9.636879 CCATCACATAATTCAGATCTACTGTAG 57.363 37.037 8.55 8.55 45.86 2.74
1601 1728 8.588472 CCCATCACATAATTCAGATCTACTGTA 58.412 37.037 0.00 0.00 45.86 2.74
1602 1729 7.448420 CCCATCACATAATTCAGATCTACTGT 58.552 38.462 0.00 0.00 45.86 3.55
1603 1730 6.370994 GCCCATCACATAATTCAGATCTACTG 59.629 42.308 0.00 0.00 46.97 2.74
1604 1731 6.043590 TGCCCATCACATAATTCAGATCTACT 59.956 38.462 0.00 0.00 0.00 2.57
1605 1732 6.233434 TGCCCATCACATAATTCAGATCTAC 58.767 40.000 0.00 0.00 0.00 2.59
1625 1756 2.431782 ACATGCCACTGATTAAATGCCC 59.568 45.455 0.00 0.00 0.00 5.36
1634 1765 2.953466 GCAATTCACATGCCACTGAT 57.047 45.000 0.00 0.00 37.85 2.90
1670 1801 9.965902 AGTTTTCCACATCTTACTGATAGAAAT 57.034 29.630 0.00 0.00 32.70 2.17
1703 1840 2.607750 ATGTGGGAGTGGCGGAGT 60.608 61.111 0.00 0.00 0.00 3.85
1704 1841 1.976132 ATCATGTGGGAGTGGCGGAG 61.976 60.000 0.00 0.00 0.00 4.63
1705 1842 1.561769 AATCATGTGGGAGTGGCGGA 61.562 55.000 0.00 0.00 0.00 5.54
1706 1843 0.180171 TAATCATGTGGGAGTGGCGG 59.820 55.000 0.00 0.00 0.00 6.13
1707 1844 2.260844 ATAATCATGTGGGAGTGGCG 57.739 50.000 0.00 0.00 0.00 5.69
1708 1845 4.067896 CACTATAATCATGTGGGAGTGGC 58.932 47.826 0.00 0.00 31.34 5.01
1709 1846 4.645535 CCACTATAATCATGTGGGAGTGG 58.354 47.826 16.44 16.44 45.29 4.00
1844 1982 4.056092 TGCATGCTTTTGTTCATTGTGA 57.944 36.364 20.33 0.00 0.00 3.58
1878 2016 5.273170 TGCACATCTGAAAACGAAAGAAAG 58.727 37.500 0.00 0.00 0.00 2.62
1903 2048 5.460646 ACCAATAACAACAAAAGATGCTCG 58.539 37.500 0.00 0.00 0.00 5.03
1925 2070 2.301346 CCATTTGGATGGCCTCAGTAC 58.699 52.381 3.32 0.00 45.96 2.73
1944 2089 3.932710 TCGTTTTAGTGTCTGCATGATCC 59.067 43.478 0.00 0.00 0.00 3.36
1949 2094 2.806244 GTGGTCGTTTTAGTGTCTGCAT 59.194 45.455 0.00 0.00 0.00 3.96
1985 2130 9.178758 GAGAATATGGTGGTTTGACTCTAATTT 57.821 33.333 0.00 0.00 0.00 1.82
1986 2131 8.552296 AGAGAATATGGTGGTTTGACTCTAATT 58.448 33.333 0.00 0.00 31.78 1.40
2006 2151 3.057033 GCACATGCCAGTGAAAAGAGAAT 60.057 43.478 9.54 0.00 42.05 2.40
2061 2206 7.652105 ACGCGCTATTTGAGATAAAAGAGAATA 59.348 33.333 5.73 0.00 31.45 1.75
2124 2316 0.872388 CAGTCGTTTTGGTGGCCTAC 59.128 55.000 3.32 0.00 0.00 3.18
2125 2317 0.470766 ACAGTCGTTTTGGTGGCCTA 59.529 50.000 3.32 0.00 0.00 3.93
2126 2318 0.395173 AACAGTCGTTTTGGTGGCCT 60.395 50.000 3.32 0.00 28.09 5.19
2127 2319 0.458260 AAACAGTCGTTTTGGTGGCC 59.542 50.000 0.00 0.00 42.82 5.36
2128 2320 1.135228 ACAAACAGTCGTTTTGGTGGC 60.135 47.619 0.00 0.00 42.82 5.01
2131 2323 3.181494 GCCTTACAAACAGTCGTTTTGGT 60.181 43.478 0.00 0.00 42.82 3.67
2132 2324 3.181495 TGCCTTACAAACAGTCGTTTTGG 60.181 43.478 0.00 0.00 42.82 3.28
2133 2325 3.789224 GTGCCTTACAAACAGTCGTTTTG 59.211 43.478 0.00 0.00 42.82 2.44
2134 2326 3.181494 GGTGCCTTACAAACAGTCGTTTT 60.181 43.478 0.00 0.00 42.82 2.43
2135 2327 2.356695 GGTGCCTTACAAACAGTCGTTT 59.643 45.455 0.00 0.00 46.38 3.60
2136 2328 1.944709 GGTGCCTTACAAACAGTCGTT 59.055 47.619 0.00 0.00 36.73 3.85
2137 2329 1.134340 TGGTGCCTTACAAACAGTCGT 60.134 47.619 0.00 0.00 0.00 4.34
2138 2330 1.531149 CTGGTGCCTTACAAACAGTCG 59.469 52.381 0.00 0.00 33.20 4.18
2139 2331 2.572290 ACTGGTGCCTTACAAACAGTC 58.428 47.619 0.00 0.00 42.10 3.51
2140 2332 2.729028 ACTGGTGCCTTACAAACAGT 57.271 45.000 0.00 0.00 41.43 3.55
2141 2333 5.508200 TTTTACTGGTGCCTTACAAACAG 57.492 39.130 0.00 0.00 39.94 3.16
2147 2339 5.715434 TTTGGATTTTACTGGTGCCTTAC 57.285 39.130 0.00 0.00 0.00 2.34
2173 2365 1.271656 CCTACAACTCGTCGGGTTCTT 59.728 52.381 7.73 0.43 0.00 2.52
2174 2366 0.886563 CCTACAACTCGTCGGGTTCT 59.113 55.000 7.73 0.00 0.00 3.01
2175 2367 0.883833 TCCTACAACTCGTCGGGTTC 59.116 55.000 7.73 0.00 31.22 3.62
2176 2368 1.475682 GATCCTACAACTCGTCGGGTT 59.524 52.381 4.20 4.20 31.22 4.11
2177 2369 1.101331 GATCCTACAACTCGTCGGGT 58.899 55.000 0.00 0.00 31.22 5.28
2178 2370 0.029035 CGATCCTACAACTCGTCGGG 59.971 60.000 0.00 0.00 31.22 5.14
2179 2371 1.012086 TCGATCCTACAACTCGTCGG 58.988 55.000 0.00 0.00 34.19 4.79
2183 2391 3.427243 GTGAGTTCGATCCTACAACTCG 58.573 50.000 13.01 0.00 46.12 4.18
2190 2398 2.414994 AGGTCGTGAGTTCGATCCTA 57.585 50.000 0.00 0.00 41.21 2.94
2218 2426 2.026822 AGTGGCTAGGAGAATGTGGTTG 60.027 50.000 0.00 0.00 0.00 3.77
2219 2427 2.237392 GAGTGGCTAGGAGAATGTGGTT 59.763 50.000 0.00 0.00 0.00 3.67
2226 2434 1.919240 TGTTCGAGTGGCTAGGAGAA 58.081 50.000 0.00 0.00 0.00 2.87
2227 2435 1.919240 TTGTTCGAGTGGCTAGGAGA 58.081 50.000 0.00 0.00 0.00 3.71
2262 2470 1.745087 CATTCGCACTAGCCATTGGTT 59.255 47.619 4.26 0.04 37.52 3.67
2263 2471 1.340017 ACATTCGCACTAGCCATTGGT 60.340 47.619 4.26 0.00 37.52 3.67
2264 2472 1.382522 ACATTCGCACTAGCCATTGG 58.617 50.000 0.00 0.00 37.52 3.16
2354 2562 9.300681 TCCAAGAATATTCAGTTGTTCTCAATT 57.699 29.630 17.56 0.00 35.92 2.32
2355 2563 8.868522 TCCAAGAATATTCAGTTGTTCTCAAT 57.131 30.769 17.56 0.00 35.92 2.57
2356 2564 8.690203 TTCCAAGAATATTCAGTTGTTCTCAA 57.310 30.769 17.56 0.62 31.01 3.02
2357 2565 8.567948 GTTTCCAAGAATATTCAGTTGTTCTCA 58.432 33.333 17.56 0.00 31.01 3.27
2358 2566 8.567948 TGTTTCCAAGAATATTCAGTTGTTCTC 58.432 33.333 17.56 5.90 31.01 2.87
2359 2567 8.463930 TGTTTCCAAGAATATTCAGTTGTTCT 57.536 30.769 17.56 0.00 32.62 3.01
2360 2568 9.132521 CATGTTTCCAAGAATATTCAGTTGTTC 57.867 33.333 17.56 4.22 0.00 3.18
2361 2569 8.859090 TCATGTTTCCAAGAATATTCAGTTGTT 58.141 29.630 17.56 0.00 0.00 2.83
2362 2570 8.408043 TCATGTTTCCAAGAATATTCAGTTGT 57.592 30.769 17.56 0.00 0.00 3.32
2363 2571 9.865321 AATCATGTTTCCAAGAATATTCAGTTG 57.135 29.630 17.56 13.00 0.00 3.16
2379 2587 9.971744 CGGGATTTCAAAAATAAATCATGTTTC 57.028 29.630 9.90 0.00 42.54 2.78
2380 2588 9.717942 TCGGGATTTCAAAAATAAATCATGTTT 57.282 25.926 9.90 0.00 42.54 2.83
2381 2589 9.150348 GTCGGGATTTCAAAAATAAATCATGTT 57.850 29.630 9.90 0.00 42.54 2.71
2382 2590 8.310382 TGTCGGGATTTCAAAAATAAATCATGT 58.690 29.630 9.90 0.00 42.54 3.21
2383 2591 8.700722 TGTCGGGATTTCAAAAATAAATCATG 57.299 30.769 9.90 0.00 42.54 3.07
2384 2592 9.889128 AATGTCGGGATTTCAAAAATAAATCAT 57.111 25.926 9.90 0.00 42.54 2.45
2385 2593 9.717942 AAATGTCGGGATTTCAAAAATAAATCA 57.282 25.926 9.90 0.00 42.54 2.57
2389 2597 9.547753 TGAAAAATGTCGGGATTTCAAAAATAA 57.452 25.926 0.00 0.00 38.45 1.40
2390 2598 9.547753 TTGAAAAATGTCGGGATTTCAAAAATA 57.452 25.926 9.37 0.00 44.34 1.40
2391 2599 8.443953 TTGAAAAATGTCGGGATTTCAAAAAT 57.556 26.923 9.37 0.00 44.34 1.82
2392 2600 7.849804 TTGAAAAATGTCGGGATTTCAAAAA 57.150 28.000 9.37 0.00 44.34 1.94
2395 2603 7.010923 CACTTTTGAAAAATGTCGGGATTTCAA 59.989 33.333 8.07 8.07 45.12 2.69
2396 2604 6.478344 CACTTTTGAAAAATGTCGGGATTTCA 59.522 34.615 0.00 0.00 39.33 2.69
2397 2605 6.563939 GCACTTTTGAAAAATGTCGGGATTTC 60.564 38.462 0.98 0.00 33.48 2.17
2398 2606 5.236263 GCACTTTTGAAAAATGTCGGGATTT 59.764 36.000 0.98 0.00 0.00 2.17
2399 2607 4.749598 GCACTTTTGAAAAATGTCGGGATT 59.250 37.500 0.98 0.00 0.00 3.01
2400 2608 4.306600 GCACTTTTGAAAAATGTCGGGAT 58.693 39.130 0.98 0.00 0.00 3.85
2401 2609 3.712187 GCACTTTTGAAAAATGTCGGGA 58.288 40.909 0.98 0.00 0.00 5.14
2402 2610 2.470999 CGCACTTTTGAAAAATGTCGGG 59.529 45.455 0.98 0.00 0.00 5.14
2403 2611 3.179599 GTCGCACTTTTGAAAAATGTCGG 59.820 43.478 12.86 0.54 0.00 4.79
2404 2612 3.179599 GGTCGCACTTTTGAAAAATGTCG 59.820 43.478 0.98 5.52 0.00 4.35
2405 2613 4.109050 TGGTCGCACTTTTGAAAAATGTC 58.891 39.130 0.98 0.00 0.00 3.06
2406 2614 4.111916 CTGGTCGCACTTTTGAAAAATGT 58.888 39.130 0.98 0.00 0.00 2.71
2407 2615 4.358851 TCTGGTCGCACTTTTGAAAAATG 58.641 39.130 0.00 0.00 0.00 2.32
2408 2616 4.647424 TCTGGTCGCACTTTTGAAAAAT 57.353 36.364 0.00 0.00 0.00 1.82
2409 2617 4.442375 TTCTGGTCGCACTTTTGAAAAA 57.558 36.364 0.00 0.00 0.00 1.94
2410 2618 4.442375 TTTCTGGTCGCACTTTTGAAAA 57.558 36.364 0.00 0.00 0.00 2.29
2411 2619 4.442375 TTTTCTGGTCGCACTTTTGAAA 57.558 36.364 0.00 0.00 0.00 2.69
2412 2620 4.442375 TTTTTCTGGTCGCACTTTTGAA 57.558 36.364 0.00 0.00 0.00 2.69
2413 2621 4.647424 ATTTTTCTGGTCGCACTTTTGA 57.353 36.364 0.00 0.00 0.00 2.69
2414 2622 4.209080 GGAATTTTTCTGGTCGCACTTTTG 59.791 41.667 0.00 0.00 0.00 2.44
2415 2623 4.368315 GGAATTTTTCTGGTCGCACTTTT 58.632 39.130 0.00 0.00 0.00 2.27
2416 2624 3.550030 CGGAATTTTTCTGGTCGCACTTT 60.550 43.478 0.00 0.00 32.30 2.66
2417 2625 2.031157 CGGAATTTTTCTGGTCGCACTT 60.031 45.455 0.00 0.00 32.30 3.16
2418 2626 1.535462 CGGAATTTTTCTGGTCGCACT 59.465 47.619 0.00 0.00 32.30 4.40
2419 2627 1.265905 ACGGAATTTTTCTGGTCGCAC 59.734 47.619 1.51 0.00 40.42 5.34
2420 2628 1.600023 ACGGAATTTTTCTGGTCGCA 58.400 45.000 1.51 0.00 40.42 5.10
2421 2629 2.031508 TCAACGGAATTTTTCTGGTCGC 60.032 45.455 1.51 0.00 40.42 5.19
2422 2630 3.889196 TCAACGGAATTTTTCTGGTCG 57.111 42.857 1.51 0.00 40.42 4.79
2423 2631 7.344441 CAAAAATCAACGGAATTTTTCTGGTC 58.656 34.615 11.89 0.00 40.42 4.02
2424 2632 6.259829 CCAAAAATCAACGGAATTTTTCTGGT 59.740 34.615 11.89 0.00 40.42 4.00
2425 2633 6.481644 TCCAAAAATCAACGGAATTTTTCTGG 59.518 34.615 11.89 12.07 40.42 3.86
2426 2634 7.475771 TCCAAAAATCAACGGAATTTTTCTG 57.524 32.000 11.89 8.38 34.67 3.02
2427 2635 8.499403 TTTCCAAAAATCAACGGAATTTTTCT 57.501 26.923 11.89 0.00 34.67 2.52
2428 2636 9.561270 TTTTTCCAAAAATCAACGGAATTTTTC 57.439 25.926 11.89 0.00 34.67 2.29
2429 2637 9.566530 CTTTTTCCAAAAATCAACGGAATTTTT 57.433 25.926 9.99 9.99 34.67 1.94
2430 2638 8.951243 TCTTTTTCCAAAAATCAACGGAATTTT 58.049 25.926 0.00 0.00 36.75 1.82
2431 2639 8.394877 GTCTTTTTCCAAAAATCAACGGAATTT 58.605 29.630 0.00 0.00 37.38 1.82
2432 2640 7.550906 TGTCTTTTTCCAAAAATCAACGGAATT 59.449 29.630 0.00 0.00 37.38 2.17
2433 2641 7.044798 TGTCTTTTTCCAAAAATCAACGGAAT 58.955 30.769 0.00 0.00 37.38 3.01
2434 2642 6.398918 TGTCTTTTTCCAAAAATCAACGGAA 58.601 32.000 0.00 0.00 37.27 4.30
2435 2643 5.967088 TGTCTTTTTCCAAAAATCAACGGA 58.033 33.333 0.00 0.00 37.27 4.69
2436 2644 6.654793 TTGTCTTTTTCCAAAAATCAACGG 57.345 33.333 0.00 0.00 37.27 4.44
2437 2645 7.513968 TGTTTGTCTTTTTCCAAAAATCAACG 58.486 30.769 11.42 0.00 37.27 4.10
2438 2646 9.670719 TTTGTTTGTCTTTTTCCAAAAATCAAC 57.329 25.926 11.42 7.45 37.27 3.18
2454 2662 9.820725 TCATTCAGATTCAAATTTTGTTTGTCT 57.179 25.926 8.89 5.97 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.