Multiple sequence alignment - TraesCS7B01G115200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G115200 chr7B 100.000 5695 0 0 1 5695 133741890 133747584 0.000000e+00 10517.0
1 TraesCS7B01G115200 chr7A 92.962 2586 127 31 356 2912 170629544 170632103 0.000000e+00 3716.0
2 TraesCS7B01G115200 chr7A 92.536 2023 100 24 2914 4904 170632134 170634137 0.000000e+00 2852.0
3 TraesCS7B01G115200 chr7A 88.000 575 63 4 5122 5694 170634328 170634898 0.000000e+00 675.0
4 TraesCS7B01G115200 chr7D 91.475 2604 126 35 349 2914 168423503 168426048 0.000000e+00 3491.0
5 TraesCS7B01G115200 chr7D 96.742 1320 31 6 2914 4223 168426077 168427394 0.000000e+00 2189.0
6 TraesCS7B01G115200 chr7D 90.026 782 48 15 4222 4987 168427488 168428255 0.000000e+00 985.0
7 TraesCS7B01G115200 chr7D 88.403 595 57 5 5102 5692 168441565 168442151 0.000000e+00 706.0
8 TraesCS7B01G115200 chr7D 88.636 132 12 2 4980 5110 168441377 168441506 2.120000e-34 158.0
9 TraesCS7B01G115200 chr7D 75.309 162 38 2 5237 5397 619022148 619021988 6.120000e-10 76.8
10 TraesCS7B01G115200 chr3B 96.447 197 7 0 1 197 417295916 417296112 5.500000e-85 326.0
11 TraesCS7B01G115200 chr3B 90.865 208 19 0 1 208 267901911 267901704 4.350000e-71 279.0
12 TraesCS7B01G115200 chr3B 88.043 184 19 1 1 181 567169336 567169519 1.240000e-51 215.0
13 TraesCS7B01G115200 chr6B 94.286 210 11 1 1 210 252093971 252094179 2.560000e-83 320.0
14 TraesCS7B01G115200 chr1B 92.381 210 16 0 1 210 629504942 629504733 3.340000e-77 300.0
15 TraesCS7B01G115200 chr1B 93.878 147 9 0 208 354 66945882 66946028 7.430000e-54 222.0
16 TraesCS7B01G115200 chr6A 96.753 154 5 0 208 361 608290060 608289907 2.040000e-64 257.0
17 TraesCS7B01G115200 chr6A 86.957 207 24 3 4 209 133852010 133851806 4.440000e-56 230.0
18 TraesCS7B01G115200 chr1D 88.208 212 22 3 1 210 329668436 329668226 3.410000e-62 250.0
19 TraesCS7B01G115200 chr1D 78.142 183 26 11 37 210 293609661 293609484 2.810000e-18 104.0
20 TraesCS7B01G115200 chr4D 93.836 146 9 0 209 354 374049837 374049692 2.670000e-53 220.0
21 TraesCS7B01G115200 chr5D 93.056 144 10 0 211 354 30567337 30567480 1.610000e-50 211.0
22 TraesCS7B01G115200 chr5B 78.155 206 35 9 7 208 95143492 95143691 7.750000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G115200 chr7B 133741890 133747584 5694 False 10517.000000 10517 100.000000 1 5695 1 chr7B.!!$F1 5694
1 TraesCS7B01G115200 chr7A 170629544 170634898 5354 False 2414.333333 3716 91.166000 356 5694 3 chr7A.!!$F1 5338
2 TraesCS7B01G115200 chr7D 168423503 168428255 4752 False 2221.666667 3491 92.747667 349 4987 3 chr7D.!!$F1 4638
3 TraesCS7B01G115200 chr7D 168441377 168442151 774 False 432.000000 706 88.519500 4980 5692 2 chr7D.!!$F2 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.036010 ATGAGGTTGCCGAGTGGAAG 60.036 55.0 0.00 0.00 37.49 3.46 F
353 354 0.100861 TGCCGGTTTCAAACGTTTCC 59.899 50.0 11.37 8.47 0.00 3.13 F
2152 2185 0.027455 CTGTGAAAAGACGTGCGCAA 59.973 50.0 14.00 0.00 0.00 4.85 F
3444 3566 0.821711 CTTCCCCTTTGTTGTCGCCA 60.822 55.0 0.00 0.00 0.00 5.69 F
3995 4123 0.169672 CTGCCGTTTTGGATGCTCTG 59.830 55.0 0.00 0.00 42.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 1875 0.104487 TCAGATGAGCTAGCAGCAGC 59.896 55.0 18.83 16.81 45.56 5.25 R
2340 2373 0.530744 TGACCTGTGCACGTAGATCC 59.469 55.0 13.13 0.00 0.00 3.36 R
3896 4024 0.588252 CAGGCGTGAACAAGAACTGG 59.412 55.0 0.00 0.00 0.00 4.00 R
4247 4480 0.323360 TCCCCAGCTGCCACATTTAC 60.323 55.0 8.66 0.00 0.00 2.01 R
5608 5933 0.037326 TGTGAGCTGCCTACTTTCCG 60.037 55.0 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.215907 CTAGATGAGGTTGCCGAGTG 57.784 55.000 0.00 0.00 0.00 3.51
20 21 0.824109 TAGATGAGGTTGCCGAGTGG 59.176 55.000 0.00 0.00 38.77 4.00
21 22 0.904865 AGATGAGGTTGCCGAGTGGA 60.905 55.000 0.00 0.00 37.49 4.02
22 23 0.036388 GATGAGGTTGCCGAGTGGAA 60.036 55.000 0.00 0.00 37.49 3.53
23 24 0.036010 ATGAGGTTGCCGAGTGGAAG 60.036 55.000 0.00 0.00 37.49 3.46
24 25 1.376037 GAGGTTGCCGAGTGGAAGG 60.376 63.158 0.00 0.00 37.49 3.46
32 33 4.785453 GAGTGGAAGGCAGCCGGG 62.785 72.222 5.55 0.00 0.00 5.73
34 35 4.660938 GTGGAAGGCAGCCGGGTT 62.661 66.667 1.64 0.00 0.00 4.11
35 36 4.659172 TGGAAGGCAGCCGGGTTG 62.659 66.667 1.64 6.50 0.00 3.77
44 45 3.324108 GCCGGGTTGGGTGTAGGA 61.324 66.667 2.18 0.00 38.63 2.94
45 46 2.987125 CCGGGTTGGGTGTAGGAG 59.013 66.667 0.00 0.00 0.00 3.69
46 47 2.666098 CCGGGTTGGGTGTAGGAGG 61.666 68.421 0.00 0.00 0.00 4.30
47 48 1.611261 CGGGTTGGGTGTAGGAGGA 60.611 63.158 0.00 0.00 0.00 3.71
48 49 1.896122 CGGGTTGGGTGTAGGAGGAC 61.896 65.000 0.00 0.00 0.00 3.85
49 50 0.546988 GGGTTGGGTGTAGGAGGACT 60.547 60.000 0.00 0.00 0.00 3.85
50 51 0.903236 GGTTGGGTGTAGGAGGACTC 59.097 60.000 0.00 0.00 0.00 3.36
63 64 3.040147 GAGGACTCCAACGATTTGTGA 57.960 47.619 0.00 0.00 0.00 3.58
64 65 2.996621 GAGGACTCCAACGATTTGTGAG 59.003 50.000 0.00 0.00 36.68 3.51
65 66 2.076863 GGACTCCAACGATTTGTGAGG 58.923 52.381 0.00 0.00 35.74 3.86
66 67 2.289444 GGACTCCAACGATTTGTGAGGA 60.289 50.000 0.00 0.00 35.74 3.71
68 69 3.045601 CTCCAACGATTTGTGAGGAGT 57.954 47.619 13.86 0.00 43.57 3.85
69 70 3.403038 CTCCAACGATTTGTGAGGAGTT 58.597 45.455 13.86 0.00 43.57 3.01
70 71 4.566004 CTCCAACGATTTGTGAGGAGTTA 58.434 43.478 13.86 0.00 43.57 2.24
71 72 4.566004 TCCAACGATTTGTGAGGAGTTAG 58.434 43.478 0.00 0.00 32.39 2.34
72 73 4.039973 TCCAACGATTTGTGAGGAGTTAGT 59.960 41.667 0.00 0.00 32.39 2.24
73 74 5.244402 TCCAACGATTTGTGAGGAGTTAGTA 59.756 40.000 0.00 0.00 32.39 1.82
74 75 6.070995 TCCAACGATTTGTGAGGAGTTAGTAT 60.071 38.462 0.00 0.00 32.39 2.12
75 76 7.123098 TCCAACGATTTGTGAGGAGTTAGTATA 59.877 37.037 0.00 0.00 32.39 1.47
76 77 7.435488 CCAACGATTTGTGAGGAGTTAGTATAG 59.565 40.741 0.00 0.00 0.00 1.31
77 78 7.040473 ACGATTTGTGAGGAGTTAGTATAGG 57.960 40.000 0.00 0.00 0.00 2.57
78 79 6.040616 ACGATTTGTGAGGAGTTAGTATAGGG 59.959 42.308 0.00 0.00 0.00 3.53
79 80 6.040616 CGATTTGTGAGGAGTTAGTATAGGGT 59.959 42.308 0.00 0.00 0.00 4.34
80 81 6.786967 TTTGTGAGGAGTTAGTATAGGGTC 57.213 41.667 0.00 0.00 0.00 4.46
81 82 4.801164 TGTGAGGAGTTAGTATAGGGTCC 58.199 47.826 0.00 0.00 0.00 4.46
82 83 4.481280 TGTGAGGAGTTAGTATAGGGTCCT 59.519 45.833 0.00 0.00 37.12 3.85
83 84 5.673574 TGTGAGGAGTTAGTATAGGGTCCTA 59.326 44.000 0.00 0.00 34.48 2.94
84 85 6.183361 TGTGAGGAGTTAGTATAGGGTCCTAG 60.183 46.154 2.97 0.00 34.48 3.02
85 86 5.312708 TGAGGAGTTAGTATAGGGTCCTAGG 59.687 48.000 0.82 0.82 34.48 3.02
86 87 4.044444 AGGAGTTAGTATAGGGTCCTAGGC 59.956 50.000 2.96 0.00 32.48 3.93
87 88 4.044444 GGAGTTAGTATAGGGTCCTAGGCT 59.956 50.000 2.96 0.00 31.45 4.58
88 89 5.000570 AGTTAGTATAGGGTCCTAGGCTG 57.999 47.826 2.96 0.00 31.45 4.85
89 90 4.087907 GTTAGTATAGGGTCCTAGGCTGG 58.912 52.174 2.96 0.00 31.45 4.85
90 91 2.153841 AGTATAGGGTCCTAGGCTGGT 58.846 52.381 2.96 0.00 31.45 4.00
91 92 2.158295 AGTATAGGGTCCTAGGCTGGTG 60.158 54.545 2.96 0.00 31.45 4.17
92 93 0.642710 ATAGGGTCCTAGGCTGGTGT 59.357 55.000 2.96 0.00 31.45 4.16
93 94 0.325296 TAGGGTCCTAGGCTGGTGTG 60.325 60.000 2.96 0.00 0.00 3.82
94 95 2.670148 GGGTCCTAGGCTGGTGTGG 61.670 68.421 2.96 0.00 0.00 4.17
95 96 2.670148 GGTCCTAGGCTGGTGTGGG 61.670 68.421 2.96 0.00 0.00 4.61
96 97 1.918800 GTCCTAGGCTGGTGTGGGT 60.919 63.158 2.96 0.00 0.00 4.51
97 98 1.918293 TCCTAGGCTGGTGTGGGTG 60.918 63.158 2.96 0.00 0.00 4.61
98 99 2.224159 CCTAGGCTGGTGTGGGTGT 61.224 63.158 0.00 0.00 0.00 4.16
99 100 1.761174 CTAGGCTGGTGTGGGTGTT 59.239 57.895 0.00 0.00 0.00 3.32
100 101 0.606401 CTAGGCTGGTGTGGGTGTTG 60.606 60.000 0.00 0.00 0.00 3.33
101 102 2.063015 TAGGCTGGTGTGGGTGTTGG 62.063 60.000 0.00 0.00 0.00 3.77
102 103 2.123897 GCTGGTGTGGGTGTTGGT 60.124 61.111 0.00 0.00 0.00 3.67
103 104 1.756561 GCTGGTGTGGGTGTTGGTT 60.757 57.895 0.00 0.00 0.00 3.67
104 105 1.326951 GCTGGTGTGGGTGTTGGTTT 61.327 55.000 0.00 0.00 0.00 3.27
105 106 0.459489 CTGGTGTGGGTGTTGGTTTG 59.541 55.000 0.00 0.00 0.00 2.93
106 107 0.251832 TGGTGTGGGTGTTGGTTTGT 60.252 50.000 0.00 0.00 0.00 2.83
107 108 1.005569 TGGTGTGGGTGTTGGTTTGTA 59.994 47.619 0.00 0.00 0.00 2.41
108 109 2.312390 GGTGTGGGTGTTGGTTTGTAT 58.688 47.619 0.00 0.00 0.00 2.29
109 110 2.295070 GGTGTGGGTGTTGGTTTGTATC 59.705 50.000 0.00 0.00 0.00 2.24
110 111 3.219281 GTGTGGGTGTTGGTTTGTATCT 58.781 45.455 0.00 0.00 0.00 1.98
111 112 3.004315 GTGTGGGTGTTGGTTTGTATCTG 59.996 47.826 0.00 0.00 0.00 2.90
112 113 3.219281 GTGGGTGTTGGTTTGTATCTGT 58.781 45.455 0.00 0.00 0.00 3.41
113 114 3.004315 GTGGGTGTTGGTTTGTATCTGTG 59.996 47.826 0.00 0.00 0.00 3.66
114 115 2.030274 GGGTGTTGGTTTGTATCTGTGC 60.030 50.000 0.00 0.00 0.00 4.57
115 116 2.884639 GGTGTTGGTTTGTATCTGTGCT 59.115 45.455 0.00 0.00 0.00 4.40
116 117 4.069304 GGTGTTGGTTTGTATCTGTGCTA 58.931 43.478 0.00 0.00 0.00 3.49
117 118 4.083484 GGTGTTGGTTTGTATCTGTGCTAC 60.083 45.833 0.00 0.00 0.00 3.58
118 119 4.513692 GTGTTGGTTTGTATCTGTGCTACA 59.486 41.667 0.00 0.00 0.00 2.74
119 120 4.513692 TGTTGGTTTGTATCTGTGCTACAC 59.486 41.667 0.00 0.00 34.56 2.90
120 121 3.322369 TGGTTTGTATCTGTGCTACACG 58.678 45.455 0.00 0.00 37.14 4.49
121 122 3.243941 TGGTTTGTATCTGTGCTACACGT 60.244 43.478 0.00 0.00 37.14 4.49
122 123 3.744426 GGTTTGTATCTGTGCTACACGTT 59.256 43.478 0.00 0.00 37.14 3.99
123 124 4.212636 GGTTTGTATCTGTGCTACACGTTT 59.787 41.667 0.00 0.00 37.14 3.60
124 125 4.983215 TTGTATCTGTGCTACACGTTTG 57.017 40.909 0.00 0.00 37.14 2.93
125 126 3.985008 TGTATCTGTGCTACACGTTTGT 58.015 40.909 0.00 0.00 37.14 2.83
126 127 4.373527 TGTATCTGTGCTACACGTTTGTT 58.626 39.130 0.00 0.00 37.14 2.83
127 128 4.446385 TGTATCTGTGCTACACGTTTGTTC 59.554 41.667 0.00 0.00 37.14 3.18
128 129 2.894902 TCTGTGCTACACGTTTGTTCA 58.105 42.857 0.00 0.00 37.14 3.18
129 130 2.605818 TCTGTGCTACACGTTTGTTCAC 59.394 45.455 0.00 0.00 37.96 3.18
130 131 2.347731 TGTGCTACACGTTTGTTCACA 58.652 42.857 8.71 8.71 41.62 3.58
131 132 2.939756 TGTGCTACACGTTTGTTCACAT 59.060 40.909 8.71 0.00 40.29 3.21
132 133 3.375610 TGTGCTACACGTTTGTTCACATT 59.624 39.130 8.71 0.00 40.29 2.71
133 134 3.966218 GTGCTACACGTTTGTTCACATTC 59.034 43.478 0.00 0.00 37.66 2.67
134 135 3.215244 GCTACACGTTTGTTCACATTCG 58.785 45.455 0.00 3.75 37.15 3.34
135 136 3.302870 GCTACACGTTTGTTCACATTCGT 60.303 43.478 0.00 4.75 37.15 3.85
137 138 2.223157 ACACGTTTGTTCACATTCGTGG 60.223 45.455 26.03 15.93 46.56 4.94
138 139 1.268335 ACGTTTGTTCACATTCGTGGC 60.268 47.619 8.44 0.00 43.79 5.01
139 140 1.394697 GTTTGTTCACATTCGTGGCG 58.605 50.000 0.00 0.00 43.79 5.69
140 141 0.317436 TTTGTTCACATTCGTGGCGC 60.317 50.000 0.00 0.00 43.79 6.53
141 142 1.440145 TTGTTCACATTCGTGGCGCA 61.440 50.000 10.83 0.00 43.79 6.09
142 143 1.440353 GTTCACATTCGTGGCGCAC 60.440 57.895 10.83 4.68 43.79 5.34
151 152 3.556625 GTGGCGCACGTCATGTAA 58.443 55.556 10.83 0.00 30.18 2.41
152 153 2.086510 GTGGCGCACGTCATGTAAT 58.913 52.632 10.83 0.00 30.18 1.89
153 154 1.282817 GTGGCGCACGTCATGTAATA 58.717 50.000 10.83 0.00 30.18 0.98
154 155 1.661617 GTGGCGCACGTCATGTAATAA 59.338 47.619 10.83 0.00 30.18 1.40
155 156 2.286833 GTGGCGCACGTCATGTAATAAT 59.713 45.455 10.83 0.00 30.18 1.28
156 157 2.939756 TGGCGCACGTCATGTAATAATT 59.060 40.909 10.83 0.00 0.00 1.40
157 158 3.375610 TGGCGCACGTCATGTAATAATTT 59.624 39.130 10.83 0.00 0.00 1.82
158 159 3.966218 GGCGCACGTCATGTAATAATTTC 59.034 43.478 10.83 0.00 0.00 2.17
159 160 4.260620 GGCGCACGTCATGTAATAATTTCT 60.261 41.667 10.83 0.00 0.00 2.52
160 161 4.898488 GCGCACGTCATGTAATAATTTCTC 59.102 41.667 0.30 0.00 0.00 2.87
161 162 5.276868 GCGCACGTCATGTAATAATTTCTCT 60.277 40.000 0.30 0.00 0.00 3.10
162 163 6.347881 CGCACGTCATGTAATAATTTCTCTC 58.652 40.000 0.00 0.00 0.00 3.20
163 164 6.562270 CGCACGTCATGTAATAATTTCTCTCC 60.562 42.308 0.00 0.00 0.00 3.71
164 165 6.480320 GCACGTCATGTAATAATTTCTCTCCT 59.520 38.462 0.00 0.00 0.00 3.69
165 166 7.011482 GCACGTCATGTAATAATTTCTCTCCTT 59.989 37.037 0.00 0.00 0.00 3.36
166 167 8.543774 CACGTCATGTAATAATTTCTCTCCTTC 58.456 37.037 0.00 0.00 0.00 3.46
167 168 8.478877 ACGTCATGTAATAATTTCTCTCCTTCT 58.521 33.333 0.00 0.00 0.00 2.85
168 169 9.967346 CGTCATGTAATAATTTCTCTCCTTCTA 57.033 33.333 0.00 0.00 0.00 2.10
191 192 9.048446 TCTATAAAAATATGGTACGTCTTTGGC 57.952 33.333 0.00 0.00 0.00 4.52
192 193 4.609691 AAAATATGGTACGTCTTTGGCG 57.390 40.909 0.00 0.00 0.00 5.69
193 194 2.973694 ATATGGTACGTCTTTGGCGT 57.026 45.000 2.22 2.22 45.11 5.68
194 195 4.389890 AATATGGTACGTCTTTGGCGTA 57.610 40.909 0.00 0.10 42.85 4.42
200 201 2.228138 ACGTCTTTGGCGTACTTTCA 57.772 45.000 0.00 0.00 41.06 2.69
201 202 2.553086 ACGTCTTTGGCGTACTTTCAA 58.447 42.857 0.00 0.00 41.06 2.69
202 203 2.937799 ACGTCTTTGGCGTACTTTCAAA 59.062 40.909 0.00 0.00 41.06 2.69
203 204 3.374678 ACGTCTTTGGCGTACTTTCAAAA 59.625 39.130 0.00 0.00 41.06 2.44
204 205 4.142643 ACGTCTTTGGCGTACTTTCAAAAA 60.143 37.500 0.00 0.00 41.06 1.94
227 228 5.693769 AAAAATCTCCCCGTGAAGAGATA 57.306 39.130 3.13 0.00 46.66 1.98
228 229 5.693769 AAAATCTCCCCGTGAAGAGATAA 57.306 39.130 3.13 0.00 46.66 1.75
229 230 4.946478 AATCTCCCCGTGAAGAGATAAG 57.054 45.455 3.13 0.00 46.66 1.73
230 231 3.664551 TCTCCCCGTGAAGAGATAAGA 57.335 47.619 0.00 0.00 34.23 2.10
231 232 4.186077 TCTCCCCGTGAAGAGATAAGAT 57.814 45.455 0.00 0.00 34.23 2.40
232 233 5.320488 TCTCCCCGTGAAGAGATAAGATA 57.680 43.478 0.00 0.00 34.23 1.98
233 234 5.702266 TCTCCCCGTGAAGAGATAAGATAA 58.298 41.667 0.00 0.00 34.23 1.75
234 235 5.770663 TCTCCCCGTGAAGAGATAAGATAAG 59.229 44.000 0.00 0.00 34.23 1.73
235 236 4.833380 TCCCCGTGAAGAGATAAGATAAGG 59.167 45.833 0.00 0.00 0.00 2.69
236 237 4.589374 CCCCGTGAAGAGATAAGATAAGGT 59.411 45.833 0.00 0.00 0.00 3.50
237 238 5.279056 CCCCGTGAAGAGATAAGATAAGGTC 60.279 48.000 0.00 0.00 0.00 3.85
238 239 5.279056 CCCGTGAAGAGATAAGATAAGGTCC 60.279 48.000 0.00 0.00 0.00 4.46
239 240 5.302059 CCGTGAAGAGATAAGATAAGGTCCA 59.698 44.000 0.00 0.00 0.00 4.02
240 241 6.442952 CGTGAAGAGATAAGATAAGGTCCAG 58.557 44.000 0.00 0.00 0.00 3.86
241 242 6.515862 CGTGAAGAGATAAGATAAGGTCCAGG 60.516 46.154 0.00 0.00 0.00 4.45
242 243 5.305644 TGAAGAGATAAGATAAGGTCCAGGC 59.694 44.000 0.00 0.00 0.00 4.85
243 244 4.820775 AGAGATAAGATAAGGTCCAGGCA 58.179 43.478 0.00 0.00 0.00 4.75
244 245 5.219739 AGAGATAAGATAAGGTCCAGGCAA 58.780 41.667 0.00 0.00 0.00 4.52
245 246 5.667626 AGAGATAAGATAAGGTCCAGGCAAA 59.332 40.000 0.00 0.00 0.00 3.68
246 247 5.934781 AGATAAGATAAGGTCCAGGCAAAG 58.065 41.667 0.00 0.00 0.00 2.77
247 248 2.426842 AGATAAGGTCCAGGCAAAGC 57.573 50.000 0.00 0.00 0.00 3.51
248 249 1.017387 GATAAGGTCCAGGCAAAGCG 58.983 55.000 0.00 0.00 0.00 4.68
249 250 0.394352 ATAAGGTCCAGGCAAAGCGG 60.394 55.000 0.00 0.00 0.00 5.52
250 251 1.774894 TAAGGTCCAGGCAAAGCGGT 61.775 55.000 0.00 0.00 0.00 5.68
251 252 3.365265 GGTCCAGGCAAAGCGGTG 61.365 66.667 0.00 0.00 0.00 4.94
252 253 3.365265 GTCCAGGCAAAGCGGTGG 61.365 66.667 0.00 3.35 35.48 4.61
253 254 4.659172 TCCAGGCAAAGCGGTGGG 62.659 66.667 8.58 0.00 35.07 4.61
263 264 2.895372 GCGGTGGGCAGTTATCGG 60.895 66.667 0.00 0.00 42.87 4.18
264 265 2.897207 CGGTGGGCAGTTATCGGA 59.103 61.111 0.00 0.00 0.00 4.55
265 266 1.227263 CGGTGGGCAGTTATCGGAG 60.227 63.158 0.00 0.00 0.00 4.63
266 267 1.523938 GGTGGGCAGTTATCGGAGC 60.524 63.158 0.00 0.00 0.00 4.70
267 268 1.220749 GTGGGCAGTTATCGGAGCA 59.779 57.895 0.00 0.00 0.00 4.26
268 269 0.392461 GTGGGCAGTTATCGGAGCAA 60.392 55.000 0.00 0.00 0.00 3.91
269 270 0.546122 TGGGCAGTTATCGGAGCAAT 59.454 50.000 0.00 0.00 0.00 3.56
270 271 1.765904 TGGGCAGTTATCGGAGCAATA 59.234 47.619 0.00 0.00 0.00 1.90
271 272 2.171659 TGGGCAGTTATCGGAGCAATAA 59.828 45.455 0.00 0.00 0.00 1.40
272 273 2.808543 GGGCAGTTATCGGAGCAATAAG 59.191 50.000 0.00 0.00 0.00 1.73
273 274 2.808543 GGCAGTTATCGGAGCAATAAGG 59.191 50.000 0.00 0.00 0.00 2.69
274 275 3.494398 GGCAGTTATCGGAGCAATAAGGA 60.494 47.826 0.00 0.00 0.00 3.36
275 276 3.495001 GCAGTTATCGGAGCAATAAGGAC 59.505 47.826 0.00 0.00 0.00 3.85
276 277 3.736252 CAGTTATCGGAGCAATAAGGACG 59.264 47.826 0.00 0.00 0.00 4.79
277 278 3.057734 GTTATCGGAGCAATAAGGACGG 58.942 50.000 0.00 0.00 0.00 4.79
278 279 1.120530 ATCGGAGCAATAAGGACGGT 58.879 50.000 0.00 0.00 0.00 4.83
279 280 0.899720 TCGGAGCAATAAGGACGGTT 59.100 50.000 0.00 0.00 0.00 4.44
280 281 1.006832 CGGAGCAATAAGGACGGTTG 58.993 55.000 0.00 0.00 0.00 3.77
281 282 1.404986 CGGAGCAATAAGGACGGTTGA 60.405 52.381 0.00 0.00 0.00 3.18
282 283 2.741878 CGGAGCAATAAGGACGGTTGAT 60.742 50.000 0.00 0.00 0.00 2.57
283 284 3.279434 GGAGCAATAAGGACGGTTGATT 58.721 45.455 0.00 0.00 0.00 2.57
284 285 3.694566 GGAGCAATAAGGACGGTTGATTT 59.305 43.478 0.00 0.00 0.00 2.17
285 286 4.438744 GGAGCAATAAGGACGGTTGATTTG 60.439 45.833 0.00 0.00 0.00 2.32
286 287 3.119495 AGCAATAAGGACGGTTGATTTGC 60.119 43.478 0.00 0.00 38.71 3.68
287 288 3.366883 GCAATAAGGACGGTTGATTTGCA 60.367 43.478 0.00 0.00 38.40 4.08
288 289 4.677779 GCAATAAGGACGGTTGATTTGCAT 60.678 41.667 0.00 0.00 38.40 3.96
289 290 4.900635 ATAAGGACGGTTGATTTGCATC 57.099 40.909 0.00 0.00 0.00 3.91
290 291 2.496899 AGGACGGTTGATTTGCATCT 57.503 45.000 0.00 0.00 0.00 2.90
291 292 2.086869 AGGACGGTTGATTTGCATCTG 58.913 47.619 0.00 0.00 0.00 2.90
292 293 2.083774 GGACGGTTGATTTGCATCTGA 58.916 47.619 0.00 0.00 0.00 3.27
293 294 2.684881 GGACGGTTGATTTGCATCTGAT 59.315 45.455 0.00 0.00 0.00 2.90
294 295 3.242870 GGACGGTTGATTTGCATCTGATC 60.243 47.826 0.00 0.00 0.00 2.92
295 296 3.614092 ACGGTTGATTTGCATCTGATCT 58.386 40.909 0.00 0.00 0.00 2.75
296 297 4.769688 ACGGTTGATTTGCATCTGATCTA 58.230 39.130 0.00 0.00 0.00 1.98
297 298 5.185454 ACGGTTGATTTGCATCTGATCTAA 58.815 37.500 0.00 0.00 0.00 2.10
298 299 5.065218 ACGGTTGATTTGCATCTGATCTAAC 59.935 40.000 0.00 0.00 0.00 2.34
299 300 5.505286 GGTTGATTTGCATCTGATCTAACG 58.495 41.667 0.00 0.00 0.00 3.18
300 301 5.294306 GGTTGATTTGCATCTGATCTAACGA 59.706 40.000 0.00 0.00 0.00 3.85
301 302 5.973651 TGATTTGCATCTGATCTAACGAC 57.026 39.130 0.00 0.00 0.00 4.34
302 303 4.504097 TGATTTGCATCTGATCTAACGACG 59.496 41.667 0.00 0.00 0.00 5.12
303 304 1.840181 TGCATCTGATCTAACGACGC 58.160 50.000 0.00 0.00 0.00 5.19
304 305 0.772926 GCATCTGATCTAACGACGCG 59.227 55.000 3.53 3.53 0.00 6.01
305 306 0.772926 CATCTGATCTAACGACGCGC 59.227 55.000 5.73 0.00 0.00 6.86
307 308 2.906719 CTGATCTAACGACGCGCGC 61.907 63.158 32.58 23.91 46.04 6.86
308 309 2.651232 GATCTAACGACGCGCGCT 60.651 61.111 32.58 17.75 46.04 5.92
309 310 2.627973 GATCTAACGACGCGCGCTC 61.628 63.158 32.58 23.99 46.04 5.03
335 336 4.084888 GAACTTTCGGCCGGCGTG 62.085 66.667 27.83 16.16 0.00 5.34
347 348 2.354188 GGCGTGCCGGTTTCAAAC 60.354 61.111 1.90 0.00 0.00 2.93
348 349 2.724358 GCGTGCCGGTTTCAAACG 60.724 61.111 1.90 5.49 37.32 3.60
349 350 2.710698 CGTGCCGGTTTCAAACGT 59.289 55.556 1.90 0.00 0.00 3.99
350 351 1.062845 CGTGCCGGTTTCAAACGTT 59.937 52.632 1.90 0.00 0.00 3.99
351 352 0.523757 CGTGCCGGTTTCAAACGTTT 60.524 50.000 7.96 7.96 0.00 3.60
352 353 1.193644 GTGCCGGTTTCAAACGTTTC 58.806 50.000 11.37 0.00 0.00 2.78
353 354 0.100861 TGCCGGTTTCAAACGTTTCC 59.899 50.000 11.37 8.47 0.00 3.13
382 383 2.290071 GGGGAAAAAGAGTGATCGGACA 60.290 50.000 0.00 0.00 0.00 4.02
392 393 1.455786 GTGATCGGACAGTCAAACACG 59.544 52.381 2.17 0.00 0.00 4.49
399 400 1.873591 GACAGTCAAACACGGCAGATT 59.126 47.619 0.00 0.00 0.00 2.40
406 409 1.148273 ACACGGCAGATTGTGTGGT 59.852 52.632 0.00 0.00 46.87 4.16
483 486 4.162690 GCAGGCGGAGGGTGTAGG 62.163 72.222 0.00 0.00 0.00 3.18
628 642 0.398318 GTGTCCTGCTCTTCCAAGGT 59.602 55.000 0.00 0.00 0.00 3.50
638 652 2.892852 CTCTTCCAAGGTTCAAATGGCA 59.107 45.455 0.00 0.00 34.13 4.92
779 793 0.912487 ATACTTCGCCCCAGGTTCCA 60.912 55.000 0.00 0.00 0.00 3.53
792 806 1.352352 AGGTTCCACCAATCCTCACTG 59.648 52.381 0.00 0.00 41.95 3.66
804 818 2.203788 TCACTGTTCGCCTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
833 850 6.906659 TCTTGATTGATTTTTCTCAGCTCAC 58.093 36.000 0.00 0.00 0.00 3.51
855 873 3.809832 CGATTCGGTTCCAAGATAGCAAT 59.190 43.478 0.00 0.00 0.00 3.56
863 881 6.518369 CGGTTCCAAGATAGCAATATAGTCCA 60.518 42.308 0.00 0.00 0.00 4.02
869 887 6.425210 AGATAGCAATATAGTCCAGTTGCA 57.575 37.500 10.97 0.00 46.92 4.08
881 899 0.390124 CAGTTGCACATGGTGGCTTT 59.610 50.000 0.00 0.00 33.64 3.51
892 910 6.267817 CACATGGTGGCTTTTGTATGATTAG 58.732 40.000 0.00 0.00 0.00 1.73
894 912 4.339748 TGGTGGCTTTTGTATGATTAGCA 58.660 39.130 0.00 0.00 33.60 3.49
914 932 2.175078 GCCGCGCTGATGCATATG 59.825 61.111 5.56 0.00 39.64 1.78
974 992 3.390135 CTGTTTCGTGCCTAGAACAGAA 58.610 45.455 12.21 6.40 33.13 3.02
1199 1221 1.433199 TGACAAGAGGAGGAGGAGGAA 59.567 52.381 0.00 0.00 0.00 3.36
1287 1309 1.470632 GCTGTTCGGAGAGGACAGATG 60.471 57.143 10.48 0.00 42.54 2.90
1458 1480 6.732392 CGACTCTTGTTCGTATCAAAAACATC 59.268 38.462 0.00 0.00 33.28 3.06
1514 1536 8.801913 GTTAGTCAGCAATTAATTTCTTCATGC 58.198 33.333 0.00 0.00 0.00 4.06
1519 1541 8.530311 TCAGCAATTAATTTCTTCATGCCTAAA 58.470 29.630 0.00 0.00 0.00 1.85
1531 1553 7.601856 TCTTCATGCCTAAACTTTTAATGGTG 58.398 34.615 0.00 0.00 0.00 4.17
1560 1586 6.071165 AGGGGAAGAATCATTTGACATTTGTC 60.071 38.462 3.72 3.72 44.97 3.18
1704 1730 5.836024 ATCAGTCCTTAACCAACACCTTA 57.164 39.130 0.00 0.00 0.00 2.69
1789 1815 6.140737 GCGCAGTGCTATACATTGATTTTTAC 59.859 38.462 14.33 0.00 38.22 2.01
1842 1869 7.069950 TGCTCATATAACCTCAGTGTTATGTCT 59.930 37.037 6.67 0.00 40.64 3.41
1848 1875 2.926200 CCTCAGTGTTATGTCTTCGCAG 59.074 50.000 0.00 0.00 0.00 5.18
1849 1876 2.337583 TCAGTGTTATGTCTTCGCAGC 58.662 47.619 0.00 0.00 0.00 5.25
1850 1877 2.029020 TCAGTGTTATGTCTTCGCAGCT 60.029 45.455 0.00 0.00 0.00 4.24
1964 1994 5.532406 TCAAGATATGCTAAAGGATGCAACC 59.468 40.000 4.51 4.51 42.74 3.77
2045 2075 5.841957 AATAGCCCTTTGATTAACTGCTG 57.158 39.130 0.00 0.00 0.00 4.41
2046 2076 1.821136 AGCCCTTTGATTAACTGCTGC 59.179 47.619 0.00 0.00 0.00 5.25
2047 2077 1.821136 GCCCTTTGATTAACTGCTGCT 59.179 47.619 0.00 0.00 0.00 4.24
2101 2134 8.865978 CACATTCTGAAATTAAATGATGTGTGG 58.134 33.333 12.42 0.00 35.03 4.17
2120 2153 1.072331 GGACCACTTGACATGTGTCCT 59.928 52.381 18.75 8.49 44.15 3.85
2152 2185 0.027455 CTGTGAAAAGACGTGCGCAA 59.973 50.000 14.00 0.00 0.00 4.85
2164 2197 4.083537 AGACGTGCGCAAAATTTTGATCTA 60.084 37.500 30.40 12.74 40.55 1.98
2239 2272 3.367395 GGGTTTTCCTGCTGACTAATTGC 60.367 47.826 0.00 0.00 40.46 3.56
2244 2277 1.929836 CCTGCTGACTAATTGCGTCTC 59.070 52.381 10.00 4.48 32.70 3.36
2253 2286 1.919956 AATTGCGTCTCAGCTGCAGC 61.920 55.000 31.53 31.53 40.15 5.25
2340 2373 2.264813 CAGCCAAATGATTTTCCTGCG 58.735 47.619 0.00 0.00 0.00 5.18
2395 2428 4.870021 ATTGGGAATAGTGCCTCTCTTT 57.130 40.909 1.47 0.00 35.89 2.52
2497 2533 4.307032 AAACTGGCTGTCACATTATCCT 57.693 40.909 0.00 0.00 0.00 3.24
2589 2625 1.048724 TGGGATAAGGTAGCGCTGCT 61.049 55.000 24.82 8.99 43.41 4.24
2618 2663 5.725110 AGCGTTCTAAACATGCTTATCTG 57.275 39.130 0.00 0.00 30.27 2.90
2621 2666 6.816640 AGCGTTCTAAACATGCTTATCTGTTA 59.183 34.615 0.00 0.00 34.61 2.41
2622 2667 6.900299 GCGTTCTAAACATGCTTATCTGTTAC 59.100 38.462 0.00 0.00 34.61 2.50
2624 2669 7.064134 CGTTCTAAACATGCTTATCTGTTACCA 59.936 37.037 0.00 0.00 34.61 3.25
2643 2697 5.607119 ACCAAGTGAATAAACTGCTTACG 57.393 39.130 0.00 0.00 0.00 3.18
2788 2842 8.985315 AGAAAATCTCATTAGCATATCCACAA 57.015 30.769 0.00 0.00 0.00 3.33
2879 2933 6.294010 GGTTTGTTCGCCTTATTTCTCTCTTT 60.294 38.462 0.00 0.00 0.00 2.52
2880 2934 7.094933 GGTTTGTTCGCCTTATTTCTCTCTTTA 60.095 37.037 0.00 0.00 0.00 1.85
2881 2935 8.451748 GTTTGTTCGCCTTATTTCTCTCTTTAT 58.548 33.333 0.00 0.00 0.00 1.40
2882 2936 9.661563 TTTGTTCGCCTTATTTCTCTCTTTATA 57.338 29.630 0.00 0.00 0.00 0.98
3035 3147 2.869801 TGCCTATAATTCGACGGCAAAG 59.130 45.455 7.85 0.00 46.76 2.77
3061 3173 3.834813 TCAGTGAGAGGCTTCAACATAGT 59.165 43.478 0.00 0.00 0.00 2.12
3092 3204 3.071479 CACAAAGTAGGTACCACGCATT 58.929 45.455 15.94 6.14 0.00 3.56
3129 3241 4.878397 CACTGACCTGACCTGGATTTTATC 59.122 45.833 0.00 0.00 0.00 1.75
3246 3358 2.050144 CTAGGATTCAGCAAGGCCCTA 58.950 52.381 0.00 0.00 0.00 3.53
3349 3471 8.077991 TCTTTCAGTTGTTTCTCTTTATGCATG 58.922 33.333 10.16 0.00 0.00 4.06
3444 3566 0.821711 CTTCCCCTTTGTTGTCGCCA 60.822 55.000 0.00 0.00 0.00 5.69
3922 4050 2.079158 CTTGTTCACGCCTGACATGAT 58.921 47.619 0.00 0.00 0.00 2.45
3995 4123 0.169672 CTGCCGTTTTGGATGCTCTG 59.830 55.000 0.00 0.00 42.00 3.35
4071 4199 9.709495 TTTCCTGAATTGATAAATTTTCCACAG 57.291 29.630 0.00 0.00 0.00 3.66
4087 4215 3.759086 TCCACAGCTACAACAACAACAAA 59.241 39.130 0.00 0.00 0.00 2.83
4188 4326 9.167311 AGACATTGAAACTATGGTTAATGAGTC 57.833 33.333 18.83 13.32 36.07 3.36
4247 4480 1.298157 TTTCCTGAACTCATGCGGCG 61.298 55.000 0.51 0.51 0.00 6.46
4274 4507 1.508088 GCAGCTGGGGATCAAAACG 59.492 57.895 17.12 0.00 0.00 3.60
4298 4531 1.595382 GAATGCCCGCGATGCTACT 60.595 57.895 8.23 0.00 0.00 2.57
4318 4551 2.187958 TGGGTACACTCCAGAGGATTG 58.812 52.381 0.00 2.28 38.19 2.67
4322 4555 1.817099 CACTCCAGAGGATTGCGCC 60.817 63.158 4.18 0.00 0.00 6.53
4340 4573 2.434359 CGGCGGAGAGGACAAACC 60.434 66.667 0.00 0.00 39.35 3.27
4404 4637 0.890542 TGCAGCCCATGTGTCTGTTC 60.891 55.000 0.00 0.00 0.00 3.18
4433 4666 3.307906 ACTGGTACCGCCGCAGAA 61.308 61.111 7.57 0.00 41.21 3.02
4472 4714 5.789521 TCAACTGATCAGACCGTATTTGAA 58.210 37.500 29.27 8.39 0.00 2.69
4473 4715 6.406370 TCAACTGATCAGACCGTATTTGAAT 58.594 36.000 29.27 0.00 0.00 2.57
4502 4744 2.124983 CCACCGGGATGCAGACAG 60.125 66.667 6.32 0.00 35.59 3.51
4578 4820 2.193248 GGCCTGTGGTGCTATCCC 59.807 66.667 0.00 0.00 0.00 3.85
4758 5007 3.196463 GAGAGTGAGGATGCTTGTGATG 58.804 50.000 0.00 0.00 0.00 3.07
4818 5067 2.072298 GTGCCTAACTCTGCTTCAGTG 58.928 52.381 0.00 0.00 32.61 3.66
4819 5068 1.082690 GCCTAACTCTGCTTCAGTGC 58.917 55.000 0.00 0.00 32.61 4.40
4820 5069 1.338579 GCCTAACTCTGCTTCAGTGCT 60.339 52.381 0.00 0.00 32.61 4.40
4821 5070 2.873649 GCCTAACTCTGCTTCAGTGCTT 60.874 50.000 0.00 0.00 32.61 3.91
4822 5071 3.617531 GCCTAACTCTGCTTCAGTGCTTA 60.618 47.826 0.00 0.00 32.61 3.09
4823 5072 4.180057 CCTAACTCTGCTTCAGTGCTTAG 58.820 47.826 0.00 3.73 32.61 2.18
4824 5073 2.758736 ACTCTGCTTCAGTGCTTAGG 57.241 50.000 0.00 0.00 32.61 2.69
4825 5074 1.974236 ACTCTGCTTCAGTGCTTAGGT 59.026 47.619 0.00 0.00 32.61 3.08
4826 5075 3.165875 ACTCTGCTTCAGTGCTTAGGTA 58.834 45.455 0.00 0.00 32.61 3.08
4827 5076 3.194542 ACTCTGCTTCAGTGCTTAGGTAG 59.805 47.826 0.00 0.00 32.61 3.18
4828 5077 3.431415 TCTGCTTCAGTGCTTAGGTAGA 58.569 45.455 0.00 0.00 32.61 2.59
4829 5078 3.445450 TCTGCTTCAGTGCTTAGGTAGAG 59.555 47.826 0.00 0.00 32.61 2.43
4830 5079 3.165875 TGCTTCAGTGCTTAGGTAGAGT 58.834 45.455 0.00 0.00 0.00 3.24
4831 5080 4.341487 TGCTTCAGTGCTTAGGTAGAGTA 58.659 43.478 0.00 0.00 0.00 2.59
4832 5081 4.158025 TGCTTCAGTGCTTAGGTAGAGTAC 59.842 45.833 0.00 0.00 0.00 2.73
4861 5110 9.806203 TTCTATTGCATATTCAACCTTTTCATG 57.194 29.630 0.00 0.00 0.00 3.07
4871 5120 0.389426 CCTTTTCATGGCTGTGCTGC 60.389 55.000 0.00 0.00 0.00 5.25
4884 5133 2.676839 CTGTGCTGCGATTGAGAGAAAT 59.323 45.455 0.00 0.00 0.00 2.17
4885 5134 2.417586 TGTGCTGCGATTGAGAGAAATG 59.582 45.455 0.00 0.00 0.00 2.32
4914 5163 1.502474 AGCCCGGTATACCTTCCTACT 59.498 52.381 19.68 5.76 0.00 2.57
4915 5164 1.617357 GCCCGGTATACCTTCCTACTG 59.383 57.143 19.68 1.50 0.00 2.74
4916 5165 2.754186 GCCCGGTATACCTTCCTACTGA 60.754 54.545 19.68 0.00 0.00 3.41
4917 5166 3.155501 CCCGGTATACCTTCCTACTGAG 58.844 54.545 19.68 0.07 0.00 3.35
4918 5167 3.155501 CCGGTATACCTTCCTACTGAGG 58.844 54.545 19.68 5.63 45.35 3.86
4924 5173 1.517832 CTTCCTACTGAGGTGGCCG 59.482 63.158 0.00 0.00 44.19 6.13
4927 5176 3.390521 CTACTGAGGTGGCCGGCA 61.391 66.667 30.85 12.04 0.00 5.69
4928 5177 2.925706 TACTGAGGTGGCCGGCAA 60.926 61.111 30.85 16.59 0.00 4.52
4943 5192 1.660560 GGCAAGCATCACCTCGCAAT 61.661 55.000 0.00 0.00 0.00 3.56
4978 5227 4.040952 AGGAGACCAAGATCGATATTTGGG 59.959 45.833 30.01 20.50 44.41 4.12
5034 5283 5.767168 CCATTTTATGAGACAAGGAGATCCC 59.233 44.000 0.00 0.00 36.42 3.85
5047 5296 0.676184 AGATCCCGACCATGACATCG 59.324 55.000 0.00 0.25 38.08 3.84
5051 5300 1.447663 CCGACCATGACATCGCACA 60.448 57.895 0.00 0.00 37.01 4.57
5053 5302 1.013524 CGACCATGACATCGCACACA 61.014 55.000 0.00 0.00 0.00 3.72
5054 5303 1.155889 GACCATGACATCGCACACAA 58.844 50.000 0.00 0.00 0.00 3.33
5057 5306 2.095110 ACCATGACATCGCACACAATTG 60.095 45.455 3.24 3.24 0.00 2.32
5058 5307 2.521996 CATGACATCGCACACAATTGG 58.478 47.619 10.83 1.35 0.00 3.16
5078 5327 2.467826 GGCGCTTCTCCATCACTGC 61.468 63.158 7.64 0.00 0.00 4.40
5107 5424 1.202651 CCATAATCGTCGGCCTCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
5130 5447 3.084039 GTGAACCTTGGCTGATCAATGA 58.916 45.455 0.00 0.00 0.00 2.57
5137 5454 4.036498 CCTTGGCTGATCAATGATGACTTC 59.964 45.833 0.00 0.00 38.69 3.01
5187 5505 8.760103 AAAATAACCACAAACTTAACAAACGT 57.240 26.923 0.00 0.00 0.00 3.99
5196 5514 8.077386 CACAAACTTAACAAACGTATTATGGGT 58.923 33.333 0.00 0.00 0.00 4.51
5211 5529 7.438459 CGTATTATGGGTATATTTAGAGCTGCC 59.562 40.741 0.00 0.00 0.00 4.85
5217 5535 5.395768 GGGTATATTTAGAGCTGCCATCGAT 60.396 44.000 0.00 0.00 0.00 3.59
5219 5537 1.586422 TTTAGAGCTGCCATCGATGC 58.414 50.000 20.25 15.19 0.00 3.91
5220 5538 0.755079 TTAGAGCTGCCATCGATGCT 59.245 50.000 20.25 13.68 38.59 3.79
5267 5585 5.351465 GCAAGAATAGAAGATTCACGTGGAA 59.649 40.000 17.00 9.21 40.46 3.53
5279 5597 0.822164 ACGTGGAATAACGAGAGGGG 59.178 55.000 3.45 0.00 46.49 4.79
5441 5762 1.131218 GCTTACGCGGTTCCGTTTC 59.869 57.895 12.47 0.00 42.20 2.78
5472 5793 2.429930 CGTGCTTCCCCCACTTCA 59.570 61.111 0.00 0.00 0.00 3.02
5515 5838 3.466791 AACGCCTGAGCAGCACAGT 62.467 57.895 17.45 0.00 39.83 3.55
5547 5872 2.219674 CGTCGGAAGATTAAGATGCAGC 59.780 50.000 0.00 0.00 45.19 5.25
5555 5880 2.177394 TTAAGATGCAGCGGACAACA 57.823 45.000 0.00 0.00 0.00 3.33
5570 5895 1.688197 ACAACAAGGGTGCAATTCCAG 59.312 47.619 0.00 0.00 0.00 3.86
5608 5933 1.026182 TTGCGTCTCCATGTCATGCC 61.026 55.000 7.35 0.00 0.00 4.40
5647 5972 0.320160 ACCGCGGAGTTCAACCTAAC 60.320 55.000 35.90 0.00 0.00 2.34
5661 5986 6.182507 TCAACCTAACAAGGCTTCTTAAGA 57.817 37.500 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.202463 CCACTCGGCAACCTCATCTAG 60.202 57.143 0.00 0.00 0.00 2.43
2 3 0.904865 TCCACTCGGCAACCTCATCT 60.905 55.000 0.00 0.00 0.00 2.90
3 4 0.036388 TTCCACTCGGCAACCTCATC 60.036 55.000 0.00 0.00 0.00 2.92
4 5 0.036010 CTTCCACTCGGCAACCTCAT 60.036 55.000 0.00 0.00 0.00 2.90
5 6 1.371183 CTTCCACTCGGCAACCTCA 59.629 57.895 0.00 0.00 0.00 3.86
6 7 1.376037 CCTTCCACTCGGCAACCTC 60.376 63.158 0.00 0.00 0.00 3.85
7 8 2.750350 CCTTCCACTCGGCAACCT 59.250 61.111 0.00 0.00 0.00 3.50
8 9 3.056328 GCCTTCCACTCGGCAACC 61.056 66.667 0.00 0.00 45.59 3.77
15 16 4.785453 CCCGGCTGCCTTCCACTC 62.785 72.222 17.92 0.00 0.00 3.51
17 18 4.660938 AACCCGGCTGCCTTCCAC 62.661 66.667 17.92 0.00 0.00 4.02
18 19 4.659172 CAACCCGGCTGCCTTCCA 62.659 66.667 17.92 0.00 0.00 3.53
24 25 4.338710 TACACCCAACCCGGCTGC 62.339 66.667 0.00 0.00 0.00 5.25
25 26 2.046314 CTACACCCAACCCGGCTG 60.046 66.667 0.00 0.00 0.00 4.85
26 27 3.327404 CCTACACCCAACCCGGCT 61.327 66.667 0.00 0.00 0.00 5.52
27 28 3.324108 TCCTACACCCAACCCGGC 61.324 66.667 0.00 0.00 0.00 6.13
28 29 2.666098 CCTCCTACACCCAACCCGG 61.666 68.421 0.00 0.00 0.00 5.73
29 30 1.611261 TCCTCCTACACCCAACCCG 60.611 63.158 0.00 0.00 0.00 5.28
30 31 0.546988 AGTCCTCCTACACCCAACCC 60.547 60.000 0.00 0.00 0.00 4.11
31 32 0.903236 GAGTCCTCCTACACCCAACC 59.097 60.000 0.00 0.00 0.00 3.77
32 33 0.903236 GGAGTCCTCCTACACCCAAC 59.097 60.000 0.41 0.00 46.16 3.77
33 34 3.393854 GGAGTCCTCCTACACCCAA 57.606 57.895 0.41 0.00 46.16 4.12
43 44 2.996621 CTCACAAATCGTTGGAGTCCTC 59.003 50.000 11.33 2.85 39.22 3.71
44 45 2.289694 CCTCACAAATCGTTGGAGTCCT 60.290 50.000 11.33 0.00 39.22 3.85
45 46 2.076863 CCTCACAAATCGTTGGAGTCC 58.923 52.381 0.73 0.73 39.22 3.85
46 47 2.996621 CTCCTCACAAATCGTTGGAGTC 59.003 50.000 0.00 0.00 39.34 3.36
47 48 2.368875 ACTCCTCACAAATCGTTGGAGT 59.631 45.455 6.65 6.65 46.33 3.85
48 49 3.045601 ACTCCTCACAAATCGTTGGAG 57.954 47.619 0.00 0.00 45.01 3.86
49 50 3.485463 AACTCCTCACAAATCGTTGGA 57.515 42.857 0.00 0.00 39.22 3.53
50 51 4.315803 ACTAACTCCTCACAAATCGTTGG 58.684 43.478 0.00 0.00 39.22 3.77
51 52 7.435488 CCTATACTAACTCCTCACAAATCGTTG 59.565 40.741 0.00 0.00 40.84 4.10
52 53 7.417570 CCCTATACTAACTCCTCACAAATCGTT 60.418 40.741 0.00 0.00 0.00 3.85
53 54 6.040616 CCCTATACTAACTCCTCACAAATCGT 59.959 42.308 0.00 0.00 0.00 3.73
54 55 6.040616 ACCCTATACTAACTCCTCACAAATCG 59.959 42.308 0.00 0.00 0.00 3.34
55 56 7.362802 ACCCTATACTAACTCCTCACAAATC 57.637 40.000 0.00 0.00 0.00 2.17
56 57 6.326843 GGACCCTATACTAACTCCTCACAAAT 59.673 42.308 0.00 0.00 0.00 2.32
57 58 5.659971 GGACCCTATACTAACTCCTCACAAA 59.340 44.000 0.00 0.00 0.00 2.83
58 59 5.043582 AGGACCCTATACTAACTCCTCACAA 60.044 44.000 0.00 0.00 0.00 3.33
59 60 4.481280 AGGACCCTATACTAACTCCTCACA 59.519 45.833 0.00 0.00 0.00 3.58
60 61 5.064314 AGGACCCTATACTAACTCCTCAC 57.936 47.826 0.00 0.00 0.00 3.51
61 62 5.312708 CCTAGGACCCTATACTAACTCCTCA 59.687 48.000 1.05 0.00 30.59 3.86
62 63 5.807392 GCCTAGGACCCTATACTAACTCCTC 60.807 52.000 14.75 0.00 30.59 3.71
63 64 4.044444 GCCTAGGACCCTATACTAACTCCT 59.956 50.000 14.75 0.00 32.74 3.69
64 65 4.044444 AGCCTAGGACCCTATACTAACTCC 59.956 50.000 14.75 0.00 0.00 3.85
65 66 5.011586 CAGCCTAGGACCCTATACTAACTC 58.988 50.000 14.75 0.00 0.00 3.01
66 67 4.202695 CCAGCCTAGGACCCTATACTAACT 60.203 50.000 14.75 0.00 0.00 2.24
67 68 4.087907 CCAGCCTAGGACCCTATACTAAC 58.912 52.174 14.75 0.00 0.00 2.34
68 69 3.731130 ACCAGCCTAGGACCCTATACTAA 59.269 47.826 14.75 0.00 0.00 2.24
69 70 3.075582 CACCAGCCTAGGACCCTATACTA 59.924 52.174 14.75 0.00 0.00 1.82
70 71 2.153841 ACCAGCCTAGGACCCTATACT 58.846 52.381 14.75 0.00 0.00 2.12
71 72 2.249139 CACCAGCCTAGGACCCTATAC 58.751 57.143 14.75 0.00 0.00 1.47
72 73 1.864251 ACACCAGCCTAGGACCCTATA 59.136 52.381 14.75 0.00 0.00 1.31
73 74 0.642710 ACACCAGCCTAGGACCCTAT 59.357 55.000 14.75 0.00 0.00 2.57
74 75 0.325296 CACACCAGCCTAGGACCCTA 60.325 60.000 14.75 0.00 0.00 3.53
75 76 1.613630 CACACCAGCCTAGGACCCT 60.614 63.158 14.75 0.00 0.00 4.34
76 77 2.670148 CCACACCAGCCTAGGACCC 61.670 68.421 14.75 0.00 0.00 4.46
77 78 2.670148 CCCACACCAGCCTAGGACC 61.670 68.421 14.75 0.00 0.00 4.46
78 79 1.918800 ACCCACACCAGCCTAGGAC 60.919 63.158 14.75 3.76 0.00 3.85
79 80 1.918293 CACCCACACCAGCCTAGGA 60.918 63.158 14.75 0.00 0.00 2.94
80 81 1.779061 AACACCCACACCAGCCTAGG 61.779 60.000 3.67 3.67 0.00 3.02
81 82 0.606401 CAACACCCACACCAGCCTAG 60.606 60.000 0.00 0.00 0.00 3.02
82 83 1.454104 CAACACCCACACCAGCCTA 59.546 57.895 0.00 0.00 0.00 3.93
83 84 2.195683 CAACACCCACACCAGCCT 59.804 61.111 0.00 0.00 0.00 4.58
84 85 2.912025 CCAACACCCACACCAGCC 60.912 66.667 0.00 0.00 0.00 4.85
85 86 1.326951 AAACCAACACCCACACCAGC 61.327 55.000 0.00 0.00 0.00 4.85
86 87 0.459489 CAAACCAACACCCACACCAG 59.541 55.000 0.00 0.00 0.00 4.00
87 88 0.251832 ACAAACCAACACCCACACCA 60.252 50.000 0.00 0.00 0.00 4.17
88 89 1.765230 TACAAACCAACACCCACACC 58.235 50.000 0.00 0.00 0.00 4.16
89 90 3.004315 CAGATACAAACCAACACCCACAC 59.996 47.826 0.00 0.00 0.00 3.82
90 91 3.218453 CAGATACAAACCAACACCCACA 58.782 45.455 0.00 0.00 0.00 4.17
91 92 3.004315 CACAGATACAAACCAACACCCAC 59.996 47.826 0.00 0.00 0.00 4.61
92 93 3.218453 CACAGATACAAACCAACACCCA 58.782 45.455 0.00 0.00 0.00 4.51
93 94 2.030274 GCACAGATACAAACCAACACCC 60.030 50.000 0.00 0.00 0.00 4.61
94 95 2.884639 AGCACAGATACAAACCAACACC 59.115 45.455 0.00 0.00 0.00 4.16
95 96 4.513692 TGTAGCACAGATACAAACCAACAC 59.486 41.667 0.00 0.00 31.31 3.32
96 97 4.513692 GTGTAGCACAGATACAAACCAACA 59.486 41.667 0.00 0.00 36.18 3.33
97 98 4.377022 CGTGTAGCACAGATACAAACCAAC 60.377 45.833 0.00 0.00 36.18 3.77
98 99 3.743911 CGTGTAGCACAGATACAAACCAA 59.256 43.478 0.00 0.00 36.18 3.67
99 100 3.243941 ACGTGTAGCACAGATACAAACCA 60.244 43.478 0.00 0.00 36.18 3.67
100 101 3.323243 ACGTGTAGCACAGATACAAACC 58.677 45.455 0.00 0.00 36.18 3.27
101 102 4.985044 AACGTGTAGCACAGATACAAAC 57.015 40.909 0.00 0.00 36.18 2.93
102 103 4.812091 ACAAACGTGTAGCACAGATACAAA 59.188 37.500 0.00 0.00 36.18 2.83
103 104 4.373527 ACAAACGTGTAGCACAGATACAA 58.626 39.130 0.00 0.00 36.18 2.41
104 105 3.985008 ACAAACGTGTAGCACAGATACA 58.015 40.909 0.00 0.00 35.72 2.29
105 106 4.446385 TGAACAAACGTGTAGCACAGATAC 59.554 41.667 0.00 0.00 36.80 2.24
106 107 4.446385 GTGAACAAACGTGTAGCACAGATA 59.554 41.667 0.00 0.00 40.35 1.98
107 108 3.247648 GTGAACAAACGTGTAGCACAGAT 59.752 43.478 0.00 0.00 40.35 2.90
108 109 2.605818 GTGAACAAACGTGTAGCACAGA 59.394 45.455 0.00 0.00 40.35 3.41
109 110 2.350192 TGTGAACAAACGTGTAGCACAG 59.650 45.455 9.87 0.00 43.01 3.66
110 111 2.347731 TGTGAACAAACGTGTAGCACA 58.652 42.857 9.87 9.87 44.38 4.57
111 112 3.602390 ATGTGAACAAACGTGTAGCAC 57.398 42.857 0.00 0.00 40.72 4.40
112 113 3.302805 CGAATGTGAACAAACGTGTAGCA 60.303 43.478 0.00 0.00 36.80 3.49
113 114 3.215244 CGAATGTGAACAAACGTGTAGC 58.785 45.455 0.00 0.00 36.80 3.58
114 115 4.446857 ACGAATGTGAACAAACGTGTAG 57.553 40.909 14.18 0.00 39.03 2.74
134 135 1.282817 TATTACATGACGTGCGCCAC 58.717 50.000 4.18 1.96 0.00 5.01
135 136 2.011540 TTATTACATGACGTGCGCCA 57.988 45.000 4.18 0.00 0.00 5.69
136 137 3.602390 AATTATTACATGACGTGCGCC 57.398 42.857 4.18 0.00 0.00 6.53
137 138 4.833126 AGAAATTATTACATGACGTGCGC 58.167 39.130 0.00 0.00 0.00 6.09
138 139 6.274001 AGAGAAATTATTACATGACGTGCG 57.726 37.500 0.00 0.00 0.00 5.34
139 140 6.480320 AGGAGAGAAATTATTACATGACGTGC 59.520 38.462 0.00 0.00 0.00 5.34
140 141 8.425577 AAGGAGAGAAATTATTACATGACGTG 57.574 34.615 0.00 0.00 0.00 4.49
141 142 8.478877 AGAAGGAGAGAAATTATTACATGACGT 58.521 33.333 0.00 0.00 0.00 4.34
142 143 8.879342 AGAAGGAGAGAAATTATTACATGACG 57.121 34.615 0.00 0.00 0.00 4.35
165 166 9.048446 GCCAAAGACGTACCATATTTTTATAGA 57.952 33.333 0.00 0.00 0.00 1.98
166 167 8.007716 CGCCAAAGACGTACCATATTTTTATAG 58.992 37.037 0.00 0.00 0.00 1.31
167 168 7.495279 ACGCCAAAGACGTACCATATTTTTATA 59.505 33.333 0.00 0.00 43.02 0.98
168 169 6.316890 ACGCCAAAGACGTACCATATTTTTAT 59.683 34.615 0.00 0.00 43.02 1.40
169 170 5.642919 ACGCCAAAGACGTACCATATTTTTA 59.357 36.000 0.00 0.00 43.02 1.52
170 171 4.456566 ACGCCAAAGACGTACCATATTTTT 59.543 37.500 0.00 0.00 43.02 1.94
171 172 4.004982 ACGCCAAAGACGTACCATATTTT 58.995 39.130 0.00 0.00 43.02 1.82
172 173 3.602483 ACGCCAAAGACGTACCATATTT 58.398 40.909 0.00 0.00 43.02 1.40
173 174 3.255969 ACGCCAAAGACGTACCATATT 57.744 42.857 0.00 0.00 43.02 1.28
174 175 2.973694 ACGCCAAAGACGTACCATAT 57.026 45.000 0.00 0.00 43.02 1.78
180 181 3.367992 TGAAAGTACGCCAAAGACGTA 57.632 42.857 0.00 0.00 44.55 3.57
182 183 3.595709 TTTGAAAGTACGCCAAAGACG 57.404 42.857 6.35 0.00 0.00 4.18
205 206 4.576330 ATCTCTTCACGGGGAGATTTTT 57.424 40.909 0.00 0.00 44.04 1.94
206 207 5.425539 TCTTATCTCTTCACGGGGAGATTTT 59.574 40.000 11.08 0.00 44.04 1.82
207 208 4.962995 TCTTATCTCTTCACGGGGAGATTT 59.037 41.667 11.08 0.00 44.04 2.17
208 209 4.547671 TCTTATCTCTTCACGGGGAGATT 58.452 43.478 11.08 0.00 44.04 2.40
209 210 4.186077 TCTTATCTCTTCACGGGGAGAT 57.814 45.455 10.69 10.69 46.80 2.75
210 211 3.664551 TCTTATCTCTTCACGGGGAGA 57.335 47.619 0.00 0.00 41.88 3.71
211 212 5.047660 CCTTATCTTATCTCTTCACGGGGAG 60.048 48.000 0.00 0.00 0.00 4.30
212 213 4.833380 CCTTATCTTATCTCTTCACGGGGA 59.167 45.833 0.00 0.00 0.00 4.81
213 214 4.589374 ACCTTATCTTATCTCTTCACGGGG 59.411 45.833 0.00 0.00 0.00 5.73
214 215 5.279056 GGACCTTATCTTATCTCTTCACGGG 60.279 48.000 0.00 0.00 0.00 5.28
215 216 5.302059 TGGACCTTATCTTATCTCTTCACGG 59.698 44.000 0.00 0.00 0.00 4.94
216 217 6.392625 TGGACCTTATCTTATCTCTTCACG 57.607 41.667 0.00 0.00 0.00 4.35
217 218 6.740122 GCCTGGACCTTATCTTATCTCTTCAC 60.740 46.154 0.00 0.00 0.00 3.18
218 219 5.305644 GCCTGGACCTTATCTTATCTCTTCA 59.694 44.000 0.00 0.00 0.00 3.02
219 220 5.305644 TGCCTGGACCTTATCTTATCTCTTC 59.694 44.000 0.00 0.00 0.00 2.87
220 221 5.219739 TGCCTGGACCTTATCTTATCTCTT 58.780 41.667 0.00 0.00 0.00 2.85
221 222 4.820775 TGCCTGGACCTTATCTTATCTCT 58.179 43.478 0.00 0.00 0.00 3.10
222 223 5.552870 TTGCCTGGACCTTATCTTATCTC 57.447 43.478 0.00 0.00 0.00 2.75
223 224 5.688766 GCTTTGCCTGGACCTTATCTTATCT 60.689 44.000 0.00 0.00 0.00 1.98
224 225 4.517075 GCTTTGCCTGGACCTTATCTTATC 59.483 45.833 0.00 0.00 0.00 1.75
225 226 4.464947 GCTTTGCCTGGACCTTATCTTAT 58.535 43.478 0.00 0.00 0.00 1.73
226 227 3.681594 CGCTTTGCCTGGACCTTATCTTA 60.682 47.826 0.00 0.00 0.00 2.10
227 228 2.728007 GCTTTGCCTGGACCTTATCTT 58.272 47.619 0.00 0.00 0.00 2.40
228 229 1.407437 CGCTTTGCCTGGACCTTATCT 60.407 52.381 0.00 0.00 0.00 1.98
229 230 1.017387 CGCTTTGCCTGGACCTTATC 58.983 55.000 0.00 0.00 0.00 1.75
230 231 0.394352 CCGCTTTGCCTGGACCTTAT 60.394 55.000 0.00 0.00 0.00 1.73
231 232 1.002624 CCGCTTTGCCTGGACCTTA 60.003 57.895 0.00 0.00 0.00 2.69
232 233 2.282462 CCGCTTTGCCTGGACCTT 60.282 61.111 0.00 0.00 0.00 3.50
233 234 3.570212 ACCGCTTTGCCTGGACCT 61.570 61.111 0.00 0.00 0.00 3.85
234 235 3.365265 CACCGCTTTGCCTGGACC 61.365 66.667 0.00 0.00 0.00 4.46
235 236 3.365265 CCACCGCTTTGCCTGGAC 61.365 66.667 0.00 0.00 0.00 4.02
236 237 4.659172 CCCACCGCTTTGCCTGGA 62.659 66.667 0.00 0.00 0.00 3.86
241 242 1.595093 ATAACTGCCCACCGCTTTGC 61.595 55.000 0.00 0.00 38.78 3.68
242 243 0.451783 GATAACTGCCCACCGCTTTG 59.548 55.000 0.00 0.00 38.78 2.77
243 244 1.024579 CGATAACTGCCCACCGCTTT 61.025 55.000 0.00 0.00 38.78 3.51
244 245 1.449601 CGATAACTGCCCACCGCTT 60.450 57.895 0.00 0.00 38.78 4.68
245 246 2.186903 CGATAACTGCCCACCGCT 59.813 61.111 0.00 0.00 38.78 5.52
246 247 2.895372 CCGATAACTGCCCACCGC 60.895 66.667 0.00 0.00 38.31 5.68
247 248 1.227263 CTCCGATAACTGCCCACCG 60.227 63.158 0.00 0.00 0.00 4.94
248 249 1.523938 GCTCCGATAACTGCCCACC 60.524 63.158 0.00 0.00 0.00 4.61
249 250 0.392461 TTGCTCCGATAACTGCCCAC 60.392 55.000 0.00 0.00 0.00 4.61
250 251 0.546122 ATTGCTCCGATAACTGCCCA 59.454 50.000 0.00 0.00 0.00 5.36
251 252 2.543777 TATTGCTCCGATAACTGCCC 57.456 50.000 0.00 0.00 0.00 5.36
252 253 2.808543 CCTTATTGCTCCGATAACTGCC 59.191 50.000 0.00 0.00 0.00 4.85
253 254 3.495001 GTCCTTATTGCTCCGATAACTGC 59.505 47.826 0.00 0.00 0.00 4.40
254 255 3.736252 CGTCCTTATTGCTCCGATAACTG 59.264 47.826 0.00 0.00 0.00 3.16
255 256 3.243771 CCGTCCTTATTGCTCCGATAACT 60.244 47.826 0.00 0.00 0.00 2.24
256 257 3.057734 CCGTCCTTATTGCTCCGATAAC 58.942 50.000 0.00 0.00 0.00 1.89
257 258 2.696707 ACCGTCCTTATTGCTCCGATAA 59.303 45.455 0.00 0.00 0.00 1.75
258 259 2.313317 ACCGTCCTTATTGCTCCGATA 58.687 47.619 0.00 0.00 0.00 2.92
259 260 1.120530 ACCGTCCTTATTGCTCCGAT 58.879 50.000 0.00 0.00 0.00 4.18
260 261 0.899720 AACCGTCCTTATTGCTCCGA 59.100 50.000 0.00 0.00 0.00 4.55
261 262 1.006832 CAACCGTCCTTATTGCTCCG 58.993 55.000 0.00 0.00 0.00 4.63
262 263 2.396590 TCAACCGTCCTTATTGCTCC 57.603 50.000 0.00 0.00 0.00 4.70
263 264 4.662145 CAAATCAACCGTCCTTATTGCTC 58.338 43.478 0.00 0.00 0.00 4.26
264 265 3.119495 GCAAATCAACCGTCCTTATTGCT 60.119 43.478 0.00 0.00 38.96 3.91
265 266 3.179048 GCAAATCAACCGTCCTTATTGC 58.821 45.455 0.00 0.00 35.69 3.56
266 267 4.433186 TGCAAATCAACCGTCCTTATTG 57.567 40.909 0.00 0.00 0.00 1.90
267 268 4.949856 AGATGCAAATCAACCGTCCTTATT 59.050 37.500 0.00 0.00 0.00 1.40
268 269 4.336433 CAGATGCAAATCAACCGTCCTTAT 59.664 41.667 0.00 0.00 0.00 1.73
269 270 3.689161 CAGATGCAAATCAACCGTCCTTA 59.311 43.478 0.00 0.00 0.00 2.69
270 271 2.489329 CAGATGCAAATCAACCGTCCTT 59.511 45.455 0.00 0.00 0.00 3.36
271 272 2.086869 CAGATGCAAATCAACCGTCCT 58.913 47.619 0.00 0.00 0.00 3.85
272 273 2.083774 TCAGATGCAAATCAACCGTCC 58.916 47.619 0.00 0.00 0.00 4.79
273 274 3.624861 AGATCAGATGCAAATCAACCGTC 59.375 43.478 0.00 0.00 0.00 4.79
274 275 3.614092 AGATCAGATGCAAATCAACCGT 58.386 40.909 0.00 0.00 0.00 4.83
275 276 5.505286 GTTAGATCAGATGCAAATCAACCG 58.495 41.667 0.00 0.00 0.00 4.44
276 277 5.294306 TCGTTAGATCAGATGCAAATCAACC 59.706 40.000 0.00 0.00 0.00 3.77
277 278 6.188175 GTCGTTAGATCAGATGCAAATCAAC 58.812 40.000 0.00 0.09 0.00 3.18
278 279 5.005682 CGTCGTTAGATCAGATGCAAATCAA 59.994 40.000 0.00 0.00 0.00 2.57
279 280 4.504097 CGTCGTTAGATCAGATGCAAATCA 59.496 41.667 0.00 0.00 0.00 2.57
280 281 4.607114 GCGTCGTTAGATCAGATGCAAATC 60.607 45.833 15.18 0.00 43.97 2.17
281 282 3.246226 GCGTCGTTAGATCAGATGCAAAT 59.754 43.478 15.18 0.00 43.97 2.32
282 283 2.603110 GCGTCGTTAGATCAGATGCAAA 59.397 45.455 15.18 0.00 43.97 3.68
283 284 2.193447 GCGTCGTTAGATCAGATGCAA 58.807 47.619 15.18 0.00 43.97 4.08
284 285 1.840181 GCGTCGTTAGATCAGATGCA 58.160 50.000 15.18 0.00 43.97 3.96
285 286 0.772926 CGCGTCGTTAGATCAGATGC 59.227 55.000 0.00 11.95 41.88 3.91
286 287 0.772926 GCGCGTCGTTAGATCAGATG 59.227 55.000 8.43 0.00 0.00 2.90
287 288 0.657659 CGCGCGTCGTTAGATCAGAT 60.658 55.000 24.19 0.00 0.00 2.90
288 289 1.297378 CGCGCGTCGTTAGATCAGA 60.297 57.895 24.19 0.00 0.00 3.27
289 290 2.906719 GCGCGCGTCGTTAGATCAG 61.907 63.158 32.35 0.00 41.07 2.90
290 291 2.947621 GCGCGCGTCGTTAGATCA 60.948 61.111 32.35 0.00 41.07 2.92
291 292 2.627973 GAGCGCGCGTCGTTAGATC 61.628 63.158 32.35 10.67 41.07 2.75
292 293 2.651232 GAGCGCGCGTCGTTAGAT 60.651 61.111 32.35 3.96 41.07 1.98
318 319 4.084888 CACGCCGGCCGAAAGTTC 62.085 66.667 30.73 7.06 41.02 3.01
333 334 1.193644 GAAACGTTTGAAACCGGCAC 58.806 50.000 20.10 0.00 0.00 5.01
334 335 0.100861 GGAAACGTTTGAAACCGGCA 59.899 50.000 20.10 0.00 0.00 5.69
335 336 0.382873 AGGAAACGTTTGAAACCGGC 59.617 50.000 20.10 0.57 0.00 6.13
336 337 2.855660 AAGGAAACGTTTGAAACCGG 57.144 45.000 20.10 0.00 0.00 5.28
344 345 1.406180 CCCCGACAAAAGGAAACGTTT 59.594 47.619 14.57 14.57 42.95 3.60
345 346 1.026584 CCCCGACAAAAGGAAACGTT 58.973 50.000 0.00 0.00 0.00 3.99
346 347 0.180878 TCCCCGACAAAAGGAAACGT 59.819 50.000 0.00 0.00 0.00 3.99
347 348 1.310904 TTCCCCGACAAAAGGAAACG 58.689 50.000 0.00 0.00 36.74 3.60
348 349 3.804786 TTTTCCCCGACAAAAGGAAAC 57.195 42.857 3.02 0.00 46.58 2.78
349 350 4.024670 TCTTTTTCCCCGACAAAAGGAAA 58.975 39.130 0.00 0.00 45.57 3.13
350 351 3.633418 TCTTTTTCCCCGACAAAAGGAA 58.367 40.909 4.91 0.00 39.50 3.36
351 352 3.219281 CTCTTTTTCCCCGACAAAAGGA 58.781 45.455 4.91 4.36 39.50 3.36
352 353 2.956333 ACTCTTTTTCCCCGACAAAAGG 59.044 45.455 4.91 0.13 39.50 3.11
353 354 3.630312 TCACTCTTTTTCCCCGACAAAAG 59.370 43.478 0.00 0.00 40.12 2.27
382 383 1.603802 CACAATCTGCCGTGTTTGACT 59.396 47.619 0.00 0.00 0.00 3.41
392 393 1.526575 CCCACACCACACAATCTGCC 61.527 60.000 0.00 0.00 0.00 4.85
399 400 4.248842 CGCCTCCCACACCACACA 62.249 66.667 0.00 0.00 0.00 3.72
406 409 3.458163 GATCCGTCGCCTCCCACA 61.458 66.667 0.00 0.00 0.00 4.17
539 542 4.838152 TGATGCTTCGGCCGAGCC 62.838 66.667 32.38 25.62 46.75 4.70
586 600 0.536460 TTTGTCTTTCAGTCGGGGGC 60.536 55.000 0.00 0.00 0.00 5.80
594 608 3.812053 CAGGACACTCCTTTGTCTTTCAG 59.188 47.826 3.44 0.00 46.91 3.02
628 642 2.296752 CAGTGACACCATGCCATTTGAA 59.703 45.455 0.84 0.00 0.00 2.69
638 652 0.603569 GAGTCGGACAGTGACACCAT 59.396 55.000 11.27 0.00 38.83 3.55
753 767 1.764854 GGGGCGAAGTATCCTGGGA 60.765 63.158 0.00 0.00 0.00 4.37
779 793 0.321653 GGCGAACAGTGAGGATTGGT 60.322 55.000 0.00 0.00 0.00 3.67
792 806 1.079057 GAGTCAAGGGGAGGCGAAC 60.079 63.158 0.00 0.00 0.00 3.95
804 818 7.230108 AGCTGAGAAAAATCAATCAAGAGTCAA 59.770 33.333 0.00 0.00 0.00 3.18
833 850 2.821546 TGCTATCTTGGAACCGAATCG 58.178 47.619 0.00 0.00 0.00 3.34
855 873 3.370421 CCACCATGTGCAACTGGACTATA 60.370 47.826 19.82 0.00 37.32 1.31
863 881 1.122227 AAAAGCCACCATGTGCAACT 58.878 45.000 0.00 0.00 38.04 3.16
869 887 5.163519 GCTAATCATACAAAAGCCACCATGT 60.164 40.000 0.00 0.00 0.00 3.21
881 899 1.939934 GCGGCAGTGCTAATCATACAA 59.060 47.619 16.11 0.00 0.00 2.41
894 912 3.738429 TATGCATCAGCGCGGCAGT 62.738 57.895 20.04 12.69 46.23 4.40
951 969 1.070134 TGTTCTAGGCACGAAACAGCT 59.930 47.619 0.00 0.00 0.00 4.24
1199 1221 2.317371 ATCCACTGTGGTGACTCTCT 57.683 50.000 25.15 0.45 45.61 3.10
1250 1272 5.392272 CGAACAGCAATCCTTTCATGATGAA 60.392 40.000 3.29 3.29 34.71 2.57
1252 1274 4.348656 CGAACAGCAATCCTTTCATGATG 58.651 43.478 0.00 0.00 36.58 3.07
1253 1275 3.379372 CCGAACAGCAATCCTTTCATGAT 59.621 43.478 0.00 0.00 0.00 2.45
1287 1309 1.990614 AGGTCCCTCTTCTTCGCCC 60.991 63.158 0.00 0.00 0.00 6.13
1398 1420 4.069869 CACACCTTGTGCCTCCTG 57.930 61.111 0.00 0.00 41.89 3.86
1416 1438 0.457166 TCGACTTGGTATGCGGTTCG 60.457 55.000 0.00 0.00 0.00 3.95
1458 1480 1.135315 CTGGCAAAACCGATGCTCG 59.865 57.895 0.00 0.00 43.94 5.03
1514 1536 7.452189 TCCCCTTTACACCATTAAAAGTTTAGG 59.548 37.037 0.00 0.00 0.00 2.69
1519 1541 6.616577 TCTTCCCCTTTACACCATTAAAAGT 58.383 36.000 0.00 0.00 0.00 2.66
1525 1547 5.269554 TGATTCTTCCCCTTTACACCATT 57.730 39.130 0.00 0.00 0.00 3.16
1531 1553 6.834168 TGTCAAATGATTCTTCCCCTTTAC 57.166 37.500 0.00 0.00 0.00 2.01
1656 1682 2.378547 ACCCAAGGAATTAACAGCCTCA 59.621 45.455 0.00 0.00 0.00 3.86
1665 1691 5.714806 GGACTGATTTTCACCCAAGGAATTA 59.285 40.000 0.00 0.00 0.00 1.40
1704 1730 3.243569 CGAGTTGTCTCAACAAGAGGAGT 60.244 47.826 13.74 0.00 45.78 3.85
1765 1791 7.374228 CAGTAAAAATCAATGTATAGCACTGCG 59.626 37.037 0.00 0.00 0.00 5.18
1766 1792 7.645340 CCAGTAAAAATCAATGTATAGCACTGC 59.355 37.037 0.00 0.00 0.00 4.40
1789 1815 2.595977 CGATCGATCGCATATGAACCAG 59.404 50.000 32.34 4.39 43.84 4.00
1848 1875 0.104487 TCAGATGAGCTAGCAGCAGC 59.896 55.000 18.83 16.81 45.56 5.25
1849 1876 2.143008 CTCAGATGAGCTAGCAGCAG 57.857 55.000 18.83 3.50 45.56 4.24
1964 1994 6.932356 ACATAGTTACCAGCATTTGATGAG 57.068 37.500 0.00 0.00 32.25 2.90
2101 2134 2.224281 TGAGGACACATGTCAAGTGGTC 60.224 50.000 13.77 0.00 46.47 4.02
2120 2153 2.015456 TTCACAGGAGGCTCTTCTGA 57.985 50.000 22.46 13.07 39.34 3.27
2164 2197 5.674525 TCTTCCTCGACATAAGCATCATTT 58.325 37.500 0.00 0.00 0.00 2.32
2239 2272 3.117171 GGTGCTGCAGCTGAGACG 61.117 66.667 36.61 0.00 42.66 4.18
2244 2277 3.640257 ATCAGGGGTGCTGCAGCTG 62.640 63.158 36.61 26.20 42.66 4.24
2253 2286 1.229145 TTTTGGGGCATCAGGGGTG 60.229 57.895 0.00 0.00 0.00 4.61
2340 2373 0.530744 TGACCTGTGCACGTAGATCC 59.469 55.000 13.13 0.00 0.00 3.36
2432 2466 8.614469 ACAATTTGAACCAAAAACTTGAAGAA 57.386 26.923 2.79 0.00 36.90 2.52
2497 2533 5.948758 CCTGATATAGCTCTCCATGTCACTA 59.051 44.000 0.00 0.00 0.00 2.74
2589 2625 9.976511 ATAAGCATGTTTAGAACGCTAGTATTA 57.023 29.630 8.07 0.00 29.70 0.98
2598 2643 7.064134 TGGTAACAGATAAGCATGTTTAGAACG 59.936 37.037 8.07 0.01 46.17 3.95
2618 2663 7.013529 CGTAAGCAGTTTATTCACTTGGTAAC 58.986 38.462 0.00 0.00 0.00 2.50
2621 2666 5.302360 TCGTAAGCAGTTTATTCACTTGGT 58.698 37.500 0.00 0.00 37.18 3.67
2622 2667 5.856126 TCGTAAGCAGTTTATTCACTTGG 57.144 39.130 0.00 0.00 37.18 3.61
2624 2669 8.094798 TGAATTCGTAAGCAGTTTATTCACTT 57.905 30.769 0.04 0.00 37.18 3.16
2669 2723 8.103305 GGATTATGCTTATCTATCCAAGGTTCA 58.897 37.037 0.00 0.00 35.82 3.18
2728 2782 5.601662 TGGATCGACATTAAGCTTTAGAGG 58.398 41.667 3.20 0.00 0.00 3.69
2787 2841 2.716424 TCCTGTCTCCCAGAAACCATTT 59.284 45.455 0.00 0.00 44.49 2.32
2788 2842 2.348472 TCCTGTCTCCCAGAAACCATT 58.652 47.619 0.00 0.00 44.49 3.16
2838 2892 4.309099 ACAAACCATTGCAGCTTAATGTG 58.691 39.130 15.61 11.33 40.34 3.21
3035 3147 3.063485 GTTGAAGCCTCTCACTGAGAAC 58.937 50.000 10.04 5.58 45.39 3.01
3061 3173 3.970842 ACCTACTTTGTGGTTGGTTGAA 58.029 40.909 0.00 0.00 41.14 2.69
3129 3241 9.201127 ACGAATATCATCATTATTGTCAGTCAG 57.799 33.333 0.00 0.00 0.00 3.51
3246 3358 4.279420 GGAGCAAGAAAAGGTCAGACATTT 59.721 41.667 7.39 7.39 33.08 2.32
3349 3471 9.628746 TTACGTAATTTAAAAAGGGAAATGAGC 57.371 29.630 3.29 0.00 0.00 4.26
3597 3719 2.159240 TGGATGATGTAGCTCGTGTGTC 60.159 50.000 0.00 0.00 0.00 3.67
3896 4024 0.588252 CAGGCGTGAACAAGAACTGG 59.412 55.000 0.00 0.00 0.00 4.00
3898 4026 1.134521 TGTCAGGCGTGAACAAGAACT 60.135 47.619 11.28 0.00 33.27 3.01
3922 4050 3.971305 AGGTGTAATATCCGATGGACCAA 59.029 43.478 0.00 0.00 32.98 3.67
3995 4123 1.561542 ACCTGTTGGGGATCATCAGTC 59.438 52.381 0.00 0.00 40.06 3.51
4064 4192 3.348119 TGTTGTTGTTGTAGCTGTGGAA 58.652 40.909 0.00 0.00 0.00 3.53
4093 4221 4.071961 TCTGATTTGCACACACACTAGT 57.928 40.909 0.00 0.00 0.00 2.57
4242 4475 2.100216 CTGCCACATTTACGCCGC 59.900 61.111 0.00 0.00 0.00 6.53
4247 4480 0.323360 TCCCCAGCTGCCACATTTAC 60.323 55.000 8.66 0.00 0.00 2.01
4274 4507 1.819632 ATCGCGGGCATTCTTCCAC 60.820 57.895 6.13 0.00 0.00 4.02
4298 4531 2.187958 CAATCCTCTGGAGTGTACCCA 58.812 52.381 5.96 0.00 42.06 4.51
4322 4555 2.434359 GTTTGTCCTCTCCGCCGG 60.434 66.667 0.00 0.00 0.00 6.13
4337 4570 3.041946 GACCATCTGGATGTAGGAGGTT 58.958 50.000 2.55 0.00 37.11 3.50
4340 4573 2.632028 CTGGACCATCTGGATGTAGGAG 59.368 54.545 2.55 0.00 37.11 3.69
4429 4662 3.997064 CTCGGCCGACCTGCTTCTG 62.997 68.421 27.28 7.39 0.00 3.02
4431 4664 2.962697 GATCTCGGCCGACCTGCTTC 62.963 65.000 27.28 11.32 0.00 3.86
4433 4666 3.532155 GATCTCGGCCGACCTGCT 61.532 66.667 27.28 6.30 0.00 4.24
4472 4714 0.676782 CCGGTGGGCTTTTCTCGAAT 60.677 55.000 0.00 0.00 0.00 3.34
4473 4715 1.302192 CCGGTGGGCTTTTCTCGAA 60.302 57.895 0.00 0.00 0.00 3.71
4502 4744 1.963338 GTGCTGGAGCTGGACACAC 60.963 63.158 0.00 0.00 42.66 3.82
4567 4809 2.731571 GCGACCAGGGATAGCACCA 61.732 63.158 0.00 0.00 0.00 4.17
4647 4889 1.075659 AGAGAAAAGGGCCTGGCAC 59.924 57.895 22.05 18.62 0.00 5.01
4652 4894 1.995542 TGATTCCAGAGAAAAGGGCCT 59.004 47.619 0.00 0.00 35.09 5.19
4758 5007 6.019779 TGTACATAATTTGCACTTTGGTCC 57.980 37.500 0.00 0.00 0.00 4.46
4775 5024 7.442364 GCACTCCACAACTCATATAATGTACAT 59.558 37.037 1.41 1.41 0.00 2.29
4814 5063 5.416326 AGAACTGTACTCTACCTAAGCACTG 59.584 44.000 0.00 0.00 0.00 3.66
4815 5064 5.572252 AGAACTGTACTCTACCTAAGCACT 58.428 41.667 0.00 0.00 0.00 4.40
4818 5067 6.919115 GCAATAGAACTGTACTCTACCTAAGC 59.081 42.308 0.00 0.00 0.00 3.09
4819 5068 7.997482 TGCAATAGAACTGTACTCTACCTAAG 58.003 38.462 0.00 0.00 0.00 2.18
4820 5069 7.949690 TGCAATAGAACTGTACTCTACCTAA 57.050 36.000 0.00 0.00 0.00 2.69
4821 5070 9.809395 ATATGCAATAGAACTGTACTCTACCTA 57.191 33.333 0.00 0.00 28.50 3.08
4822 5071 8.713708 ATATGCAATAGAACTGTACTCTACCT 57.286 34.615 0.00 0.00 28.50 3.08
4823 5072 9.413048 GAATATGCAATAGAACTGTACTCTACC 57.587 37.037 0.00 0.00 28.50 3.18
4824 5073 9.967346 TGAATATGCAATAGAACTGTACTCTAC 57.033 33.333 0.00 0.00 28.50 2.59
4826 5075 9.319143 GTTGAATATGCAATAGAACTGTACTCT 57.681 33.333 0.00 0.00 28.50 3.24
4827 5076 8.552034 GGTTGAATATGCAATAGAACTGTACTC 58.448 37.037 0.00 0.00 28.50 2.59
4828 5077 8.267894 AGGTTGAATATGCAATAGAACTGTACT 58.732 33.333 0.00 0.00 28.50 2.73
4829 5078 8.438676 AGGTTGAATATGCAATAGAACTGTAC 57.561 34.615 0.00 0.00 28.50 2.90
4830 5079 9.461312 AAAGGTTGAATATGCAATAGAACTGTA 57.539 29.630 0.00 0.00 28.50 2.74
4831 5080 7.944729 AAGGTTGAATATGCAATAGAACTGT 57.055 32.000 0.00 0.00 28.50 3.55
4832 5081 9.294030 GAAAAGGTTGAATATGCAATAGAACTG 57.706 33.333 0.00 0.00 28.50 3.16
4861 5110 1.703438 CTCTCAATCGCAGCACAGCC 61.703 60.000 0.00 0.00 0.00 4.85
4871 5120 4.931601 TCTTGTGACCATTTCTCTCAATCG 59.068 41.667 0.00 0.00 0.00 3.34
4884 5133 0.907704 ATACCGGGCTCTTGTGACCA 60.908 55.000 6.32 0.00 0.00 4.02
4885 5134 1.117150 TATACCGGGCTCTTGTGACC 58.883 55.000 6.32 0.00 0.00 4.02
4918 5167 4.120331 GTGATGCTTGCCGGCCAC 62.120 66.667 26.77 19.49 0.00 5.01
4924 5173 1.660560 ATTGCGAGGTGATGCTTGCC 61.661 55.000 0.00 0.00 0.00 4.52
4927 5176 2.012673 GAGAATTGCGAGGTGATGCTT 58.987 47.619 0.00 0.00 0.00 3.91
4928 5177 1.209019 AGAGAATTGCGAGGTGATGCT 59.791 47.619 0.00 0.00 0.00 3.79
4930 5179 1.329906 GCAGAGAATTGCGAGGTGATG 59.670 52.381 0.00 0.00 33.90 3.07
4943 5192 1.290324 GTCTCCTGCACGCAGAGAA 59.710 57.895 20.42 4.79 46.30 2.87
4951 5200 0.532573 TCGATCTTGGTCTCCTGCAC 59.467 55.000 0.00 0.00 0.00 4.57
4978 5227 3.527427 GGGCCAATTACCCGCTGC 61.527 66.667 4.39 0.00 37.67 5.25
5008 5257 5.441718 TCTCCTTGTCTCATAAAATGGCT 57.558 39.130 0.00 0.00 0.00 4.75
5017 5266 2.035632 GTCGGGATCTCCTTGTCTCAT 58.964 52.381 0.00 0.00 35.95 2.90
5034 5283 1.013524 TGTGTGCGATGTCATGGTCG 61.014 55.000 10.39 10.39 40.62 4.79
5047 5296 4.740431 GCGCCCCCAATTGTGTGC 62.740 66.667 4.43 7.12 0.00 4.57
5051 5300 1.678970 GAGAAGCGCCCCCAATTGT 60.679 57.895 2.29 0.00 0.00 2.71
5053 5302 2.043953 GGAGAAGCGCCCCCAATT 60.044 61.111 2.29 0.00 0.00 2.32
5054 5303 2.631012 GATGGAGAAGCGCCCCCAAT 62.631 60.000 2.29 0.00 31.77 3.16
5057 5306 3.797353 TGATGGAGAAGCGCCCCC 61.797 66.667 2.29 0.14 0.00 5.40
5058 5307 2.514824 GTGATGGAGAAGCGCCCC 60.515 66.667 2.29 0.56 0.00 5.80
5078 5327 3.298489 CGACGATTATGGAAACGTTGG 57.702 47.619 0.00 0.00 43.23 3.77
5107 5424 0.770499 TGATCAGCCAAGGTTCACCA 59.230 50.000 0.00 0.00 38.89 4.17
5130 5447 7.288560 AGCCTCATAGATCAAATTGAAGTCAT 58.711 34.615 0.00 0.00 0.00 3.06
5137 5454 8.899427 TTTCTCTAGCCTCATAGATCAAATTG 57.101 34.615 0.00 0.00 31.50 2.32
5187 5505 8.387333 TGGCAGCTCTAAATATACCCATAATA 57.613 34.615 0.00 0.00 0.00 0.98
5196 5514 5.105187 AGCATCGATGGCAGCTCTAAATATA 60.105 40.000 26.00 0.00 30.05 0.86
5198 5516 3.007290 AGCATCGATGGCAGCTCTAAATA 59.993 43.478 26.00 0.00 30.05 1.40
5211 5529 4.923942 AGCCCCGCAGCATCGATG 62.924 66.667 21.27 21.27 34.23 3.84
5279 5597 0.461516 GCTAACAAGCGTAGGACCCC 60.462 60.000 0.00 0.00 0.00 4.95
5284 5602 5.523916 ACTTATCAATGCTAACAAGCGTAGG 59.476 40.000 0.00 0.00 37.69 3.18
5286 5604 6.816640 AGAACTTATCAATGCTAACAAGCGTA 59.183 34.615 0.00 0.00 37.69 4.42
5301 5619 8.715191 AACAAATGTTGCAAAAGAACTTATCA 57.285 26.923 0.00 0.00 36.80 2.15
5441 5762 2.966309 GCACGGCCAAAAGGACTCG 61.966 63.158 2.24 0.00 0.00 4.18
5472 5793 0.818040 GCCTTGGTGACCGTCTTGTT 60.818 55.000 0.00 0.00 0.00 2.83
5547 5872 0.673437 AATTGCACCCTTGTTGTCCG 59.327 50.000 0.00 0.00 0.00 4.79
5555 5880 4.046286 TGTAATCTGGAATTGCACCCTT 57.954 40.909 0.00 0.00 0.00 3.95
5570 5895 5.122396 ACGCAAGAAGACCTCATTTGTAATC 59.878 40.000 0.00 0.00 43.62 1.75
5608 5933 0.037326 TGTGAGCTGCCTACTTTCCG 60.037 55.000 0.00 0.00 0.00 4.30
5661 5986 1.415659 AGCGAGCCTGATTATGAGCTT 59.584 47.619 0.00 0.00 35.23 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.