AutoCloner

Multiple sequence alignment - TraesCS7B01G115000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G115000	chr7B	100.000	4178	0	0	1	4178	133498772	133494595	0.000000e+00	7716
1	TraesCS7B01G115000	chr5D	94.761	3264	152	9	927	4178	245297031	245300287	0.000000e+00	5062
2	TraesCS7B01G115000	chr5D	89.049	347	32	3	564	907	245287912	245288255	3.860000e-115	425
3	TraesCS7B01G115000	chr4A	92.882	3175	196	19	560	3718	281408704	281411864	0.000000e+00	4584
4	TraesCS7B01G115000	chr4A	96.996	566	15	2	1	564	675228518	675229083	0.000000e+00	950
5	TraesCS7B01G115000	chr4A	96.996	566	15	2	1	564	675297010	675297575	0.000000e+00	950
6	TraesCS7B01G115000	chr4A	95.484	465	21	0	3714	4178	281416891	281417355	0.000000e+00	743
7	TraesCS7B01G115000	chr7D	88.368	2347	227	23	1849	4178	28368570	28366253	0.000000e+00	2780
8	TraesCS7B01G115000	chr6A	88.150	2346	236	24	1849	4178	479404868	479407187	0.000000e+00	2754
9	TraesCS7B01G115000	chr6A	87.724	2346	238	26	1849	4178	88096242	88098553	0.000000e+00	2691
10	TraesCS7B01G115000	chr7A	88.118	2348	233	26	1849	4178	671189814	671192133	0.000000e+00	2748
11	TraesCS7B01G115000	chr5B	88.065	2346	238	24	1849	4178	522907248	522904929	0.000000e+00	2743
12	TraesCS7B01G115000	chr1A	90.763	996	87	4	3184	4178	549415547	549416538	0.000000e+00	1325
13	TraesCS7B01G115000	chr1A	78.207	725	152	6	3439	4160	52566287	52567008	3.810000e-125	459
14	TraesCS7B01G115000	chr1A	77.702	731	156	7	3439	4166	52561347	52560621	1.380000e-119	440
15	TraesCS7B01G115000	chr3B	97.350	566	13	2	1	564	770735276	770735841	0.000000e+00	961
16	TraesCS7B01G115000	chr3B	97.350	566	12	3	1	564	55723702	55723138	0.000000e+00	959
17	TraesCS7B01G115000	chr5A	97.350	566	12	3	1	564	110289394	110288830	0.000000e+00	959
18	TraesCS7B01G115000	chr6B	97.173	566	13	3	1	564	201317041	201316477	0.000000e+00	953
19	TraesCS7B01G115000	chr2B	97.173	566	13	3	1	564	97973218	97972654	0.000000e+00	953
20	TraesCS7B01G115000	chrUn	96.996	566	15	2	1	564	330525374	330525939	0.000000e+00	950
21	TraesCS7B01G115000	chrUn	96.996	566	15	2	1	564	366455839	366455274	0.000000e+00	950
22	TraesCS7B01G115000	chr4B	98.451	452	6	1	718	1168	621673581	621673130	0.000000e+00	795
23	TraesCS7B01G115000	chr4B	96.471	170	6	0	562	731	621674396	621674227	8.840000e-72	281

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G115000	chr7B	133494595	133498772	4177	True	7716	7716	100.000	1	4178	1	chr7B.!!$R1	4177
1	TraesCS7B01G115000	chr5D	245297031	245300287	3256	False	5062	5062	94.761	927	4178	1	chr5D.!!$F2	3251
2	TraesCS7B01G115000	chr4A	281408704	281411864	3160	False	4584	4584	92.882	560	3718	1	chr4A.!!$F1	3158
3	TraesCS7B01G115000	chr4A	675228518	675229083	565	False	950	950	96.996	1	564	1	chr4A.!!$F3	563
4	TraesCS7B01G115000	chr4A	675297010	675297575	565	False	950	950	96.996	1	564	1	chr4A.!!$F4	563
5	TraesCS7B01G115000	chr7D	28366253	28368570	2317	True	2780	2780	88.368	1849	4178	1	chr7D.!!$R1	2329
6	TraesCS7B01G115000	chr6A	479404868	479407187	2319	False	2754	2754	88.150	1849	4178	1	chr6A.!!$F2	2329
7	TraesCS7B01G115000	chr6A	88096242	88098553	2311	False	2691	2691	87.724	1849	4178	1	chr6A.!!$F1	2329
8	TraesCS7B01G115000	chr7A	671189814	671192133	2319	False	2748	2748	88.118	1849	4178	1	chr7A.!!$F1	2329
9	TraesCS7B01G115000	chr5B	522904929	522907248	2319	True	2743	2743	88.065	1849	4178	1	chr5B.!!$R1	2329
10	TraesCS7B01G115000	chr1A	549415547	549416538	991	False	1325	1325	90.763	3184	4178	1	chr1A.!!$F2	994
11	TraesCS7B01G115000	chr1A	52566287	52567008	721	False	459	459	78.207	3439	4160	1	chr1A.!!$F1	721
12	TraesCS7B01G115000	chr1A	52560621	52561347	726	True	440	440	77.702	3439	4166	1	chr1A.!!$R1	727
13	TraesCS7B01G115000	chr3B	770735276	770735841	565	False	961	961	97.350	1	564	1	chr3B.!!$F1	563
14	TraesCS7B01G115000	chr3B	55723138	55723702	564	True	959	959	97.350	1	564	1	chr3B.!!$R1	563
15	TraesCS7B01G115000	chr5A	110288830	110289394	564	True	959	959	97.350	1	564	1	chr5A.!!$R1	563
16	TraesCS7B01G115000	chr6B	201316477	201317041	564	True	953	953	97.173	1	564	1	chr6B.!!$R1	563
17	TraesCS7B01G115000	chr2B	97972654	97973218	564	True	953	953	97.173	1	564	1	chr2B.!!$R1	563
18	TraesCS7B01G115000	chrUn	330525374	330525939	565	False	950	950	96.996	1	564	1	chrUn.!!$F1	563
19	TraesCS7B01G115000	chrUn	366455274	366455839	565	True	950	950	96.996	1	564	1	chrUn.!!$R1	563
20	TraesCS7B01G115000	chr4B	621673130	621674396	1266	True	538	795	97.461	562	1168	2	chr4B.!!$R1	606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
873	1538	0.117340	AACCCTCCTCCTACAGCACT	59.883	55.0	0.00	0.00	0.00	4.40	F
1866	2535	0.820891	AATGGCTGATCGATGGTGCC	60.821	55.0	19.86	19.86	43.49	5.01	F
2621	3301	0.456995	GCTGAAGGGAGAACTCGTCG	60.457	60.0	0.00	0.00	0.00	5.12	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2166	2844	0.109532	TCCGAAAACCAGGCACATCA	59.890	50.000	0.00	0.00	0.00	3.07	R
2676	3356	1.819288	AGATCCGTCACTTGTGTCGAT	59.181	47.619	18.52	11.41	0.00	3.59	R
3759	4454	2.621998	TCCGAAACCATATCGAGAGGAC	59.378	50.000	7.49	0.00	42.76	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
83	84	2.654863	ACAAGGTGAAAGGTCAGGTTG	58.345	47.619	0.00	0.00	35.27	3.77
127	128	9.959721	ATACTTGTTTACCTGATTACTTGATGT	57.040	29.630	0.00	0.00	0.00	3.06
196	197	3.663025	TGCAATCAGACGAAGAATGACA	58.337	40.909	0.00	0.00	0.00	3.58
418	421	7.170277	AGAGCCATGCAAACATATATATGACA	58.830	34.615	26.05	17.87	37.15	3.58
586	589	5.629125	AGGCCTTCTTTGATTCATAGGATC	58.371	41.667	0.00	0.00	0.00	3.36
654	657	5.010516	TGTGATGGTTGTTTGATTTACAGGG	59.989	40.000	0.00	0.00	0.00	4.45
873	1538	0.117340	AACCCTCCTCCTACAGCACT	59.883	55.000	0.00	0.00	0.00	4.40
1046	1711	2.092699	GGCCACTCCAAAAGCTAGATCT	60.093	50.000	0.00	0.00	34.01	2.75
1079	1744	7.609146	CCCTTGCTTCATATGATAGCTAATTGA	59.391	37.037	26.14	12.50	35.93	2.57
1169	1837	4.614555	TGATTAGTATTGGCTTGCAACG	57.385	40.909	0.00	0.00	0.00	4.10
1211	1879	7.123697	TCCCGTTTTTCAGATCTGAGATTACTA	59.876	37.037	23.92	6.23	41.13	1.82
1222	1890	8.310382	AGATCTGAGATTACTATTTCGGGATTG	58.690	37.037	0.00	0.00	0.00	2.67
1226	1894	4.911522	AGATTACTATTTCGGGATTGGGGA	59.088	41.667	0.00	0.00	0.00	4.81
1235	1904	3.096092	TCGGGATTGGGGATTTTCTTTG	58.904	45.455	0.00	0.00	0.00	2.77
1335	2004	6.338146	TGATGCTACTCGTATTGCTAGTTTT	58.662	36.000	0.00	0.00	0.00	2.43
1349	2018	8.635765	ATTGCTAGTTTTCTTCTGGTTCATTA	57.364	30.769	0.00	0.00	0.00	1.90
1395	2064	8.643324	AGACCGTTTTCTTCATAGCTATTAGAT	58.357	33.333	2.64	0.00	0.00	1.98
1441	2110	5.809719	TGAGTTAATTCGCAATGCACATA	57.190	34.783	5.91	0.00	0.00	2.29
1471	2140	4.519540	AGGAACATGGTAATTTGTGTGC	57.480	40.909	0.00	0.00	0.00	4.57
1473	2142	2.346099	ACATGGTAATTTGTGTGCGC	57.654	45.000	0.00	0.00	0.00	6.09
1494	2163	2.030363	CGCACAGGGCACTAAATTTTCA	60.030	45.455	0.00	0.00	45.17	2.69
1495	2164	3.367292	CGCACAGGGCACTAAATTTTCAT	60.367	43.478	0.00	0.00	45.17	2.57
1513	2182	7.636150	TTTTCATCTTCCATGGATTCTCTTC	57.364	36.000	17.06	0.00	0.00	2.87
1597	2266	3.642848	TGATGCATGTAGGTAGCTGATCA	59.357	43.478	2.46	0.00	0.00	2.92
1598	2267	4.285260	TGATGCATGTAGGTAGCTGATCAT	59.715	41.667	2.46	4.22	0.00	2.45
1605	2274	1.133976	AGGTAGCTGATCATTGGTGCC	60.134	52.381	11.70	11.70	36.85	5.01
1616	2285	1.830587	ATTGGTGCCTGTCAGAGCGA	61.831	55.000	0.00	0.00	0.00	4.93
1641	2310	5.018539	AGGTCATCATTTGCAATCCAATG	57.981	39.130	0.00	0.61	32.49	2.82
1703	2372	6.995091	GTCTTCATCCAGAAATAGGTATGCTT	59.005	38.462	0.00	0.00	35.40	3.91
1705	2374	7.500227	TCTTCATCCAGAAATAGGTATGCTTTG	59.500	37.037	0.00	0.00	35.40	2.77
1757	2426	9.410556	AGATGTGCAATTTTATTTAGTTGTGAC	57.589	29.630	0.00	0.00	0.00	3.67
1762	2431	7.377397	TGCAATTTTATTTAGTTGTGACGTGTC	59.623	33.333	0.00	0.00	0.00	3.67
1830	2499	5.805994	GGAGTCACAAAAGGTAATACTCGAG	59.194	44.000	11.84	11.84	35.43	4.04
1866	2535	0.820891	AATGGCTGATCGATGGTGCC	60.821	55.000	19.86	19.86	43.49	5.01
1923	2592	3.511146	TGGGGCAATTGATCTTGAACTTC	59.489	43.478	10.34	0.00	0.00	3.01
2155	2833	6.235231	TGAAGTTGTTCCTTGTTAGACTCT	57.765	37.500	0.00	0.00	0.00	3.24
2164	2842	9.847224	TGTTCCTTGTTAGACTCTTAAAAGATT	57.153	29.630	0.00	0.00	33.93	2.40
2216	2894	1.204146	TGGAGTAAGGAGGCATGGAC	58.796	55.000	0.00	0.00	0.00	4.02
2289	2967	3.131046	ACCAAGTCAAACAAAAGGAGCAG	59.869	43.478	0.00	0.00	0.00	4.24
2312	2990	6.262049	CAGGATCTGAAGAGAGACTATCGAAA	59.738	42.308	0.00	0.00	32.44	3.46
2373	3051	6.381133	GGGATAAGGACAGAAAAATGGTTGAT	59.619	38.462	0.00	0.00	0.00	2.57
2621	3301	0.456995	GCTGAAGGGAGAACTCGTCG	60.457	60.000	0.00	0.00	0.00	5.12
2676	3356	1.545428	GCACCAGTTCCCTCATCACAA	60.545	52.381	0.00	0.00	0.00	3.33
2691	3371	2.124122	TCACAATCGACACAAGTGACG	58.876	47.619	16.60	16.60	46.71	4.35
2754	3434	5.419542	GGTGAGTCAGATATGCAGTTTACA	58.580	41.667	0.00	0.00	0.00	2.41
2832	3512	4.124351	CAGCATGTGCAAGCCCCG	62.124	66.667	7.83	0.00	45.16	5.73
2904	3584	4.333649	CAGAAACGTGGTGCTAATGATGAT	59.666	41.667	0.00	0.00	0.00	2.45
2987	3667	1.760029	GAAGAAGCTAGAGGACCCCTG	59.240	57.143	0.00	0.00	31.76	4.45
3013	3693	1.605232	TCAACAAGTGCATCACAGCAG	59.395	47.619	0.00	0.00	46.69	4.24
3031	3711	2.666317	CAGTTGAAGGGTTGGAAGGTT	58.334	47.619	0.00	0.00	0.00	3.50
3105	3785	7.234355	AGAACAGGGAAGTTTTCTTGTCATAT	58.766	34.615	0.00	0.00	40.61	1.78
3162	3842	3.267597	GATTGCGCGTGCCCAAACT	62.268	57.895	19.87	0.00	41.78	2.66
3502	4197	7.559590	ACATTTGTTGTGCTATATCTTCTCC	57.440	36.000	0.00	0.00	37.11	3.71
3596	4291	4.211794	GGCACATCAACAAATTGTTCTTGG	59.788	41.667	8.59	0.00	38.77	3.61
3662	4357	7.487509	CCATTATGCAAACGTATGAAATTGTGA	59.512	33.333	0.00	0.00	0.00	3.58
3731	4426	7.341805	AGTAATGTGAAGCCACTCTCAATATT	58.658	34.615	0.00	0.00	43.55	1.28
3791	4486	0.387239	GGTTTCGGAGTTGTGCATGC	60.387	55.000	11.82	11.82	0.00	4.06
3853	4548	2.557920	ACTCTCCCTTGTTCTTGCAG	57.442	50.000	0.00	0.00	0.00	4.41
3909	4604	5.791336	TTGTGGTGTATTTGCATAACCAA	57.209	34.783	7.73	0.00	42.32	3.67
4111	4806	6.317857	GTTCTTGCTCATGAACAGGTAATTC	58.682	40.000	18.08	0.00	41.98	2.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
83	84	4.302455	AGTATAGAACGACATGCAGATGC	58.698	43.478	0.00	0.00	42.50	3.91
164	165	7.496920	TCTTCGTCTGATTGCATCATCTAAATT	59.503	33.333	0.35	0.00	38.85	1.82
165	166	6.988580	TCTTCGTCTGATTGCATCATCTAAAT	59.011	34.615	0.35	0.00	38.85	1.40
196	197	4.040339	CCAAGAAATTTGTACAAGCCCCTT	59.960	41.667	8.56	8.57	0.00	3.95
385	388	5.357742	TGTTTGCATGGCTCTCTATTCTA	57.642	39.130	0.00	0.00	0.00	2.10
418	421	9.860898	GCATATTCTCCTTGACAAGTTAAAAAT	57.139	29.630	14.03	8.49	0.00	1.82
492	495	4.451629	ACCCACGTACATGAGAACTAAG	57.548	45.455	0.00	0.00	0.00	2.18
873	1538	2.368439	CGAATGAGATGGGGAAAAGCA	58.632	47.619	0.00	0.00	0.00	3.91
1046	1711	1.965414	TATGAAGCAAGGGAGGACCA	58.035	50.000	0.00	0.00	43.89	4.02
1079	1744	3.123050	GCCGAGCAACAAGACAAAAATT	58.877	40.909	0.00	0.00	0.00	1.82
1086	1752	0.874390	TTGATGCCGAGCAACAAGAC	59.126	50.000	14.39	1.10	44.08	3.01
1169	1837	5.638596	AACGGGAGAAAAATCCACAATAC	57.361	39.130	0.00	0.00	41.52	1.89
1211	1879	3.994317	AGAAAATCCCCAATCCCGAAAT	58.006	40.909	0.00	0.00	0.00	2.17
1215	1883	2.418609	GCAAAGAAAATCCCCAATCCCG	60.419	50.000	0.00	0.00	0.00	5.14
1222	1890	4.321974	CCTGTAGTTGCAAAGAAAATCCCC	60.322	45.833	0.00	0.00	0.00	4.81
1226	1894	7.817418	TTAGACCTGTAGTTGCAAAGAAAAT	57.183	32.000	0.00	0.00	0.00	1.82
1235	1904	9.162764	TGAGAAAATATTTAGACCTGTAGTTGC	57.837	33.333	0.01	0.00	0.00	4.17
1309	1978	3.377346	AGCAATACGAGTAGCATCAGG	57.623	47.619	0.00	0.00	0.00	3.86
1313	1982	6.574350	AGAAAACTAGCAATACGAGTAGCAT	58.426	36.000	0.00	0.00	32.40	3.79
1349	2018	5.303078	GGTCTCATGATACTCATACAGTGGT	59.697	44.000	10.68	0.00	34.28	4.16
1362	2031	6.701841	GCTATGAAGAAAACGGTCTCATGATA	59.298	38.462	0.00	0.00	0.00	2.15
1369	2038	8.008513	TCTAATAGCTATGAAGAAAACGGTCT	57.991	34.615	7.09	0.00	0.00	3.85
1416	2085	4.679197	TGTGCATTGCGAATTAACTCAAAC	59.321	37.500	3.84	0.00	0.00	2.93
1473	2142	2.030363	TGAAAATTTAGTGCCCTGTGCG	60.030	45.455	0.00	0.00	45.60	5.34
1494	2163	4.165565	TGCAGAAGAGAATCCATGGAAGAT	59.834	41.667	20.67	8.24	33.66	2.40
1495	2164	3.520721	TGCAGAAGAGAATCCATGGAAGA	59.479	43.478	20.67	0.00	33.66	2.87
1513	2182	2.121786	GCGCCAATGATATTTGTGCAG	58.878	47.619	0.00	0.00	0.00	4.41
1597	2266	1.376424	CGCTCTGACAGGCACCAAT	60.376	57.895	13.94	0.00	0.00	3.16
1598	2267	2.031012	CGCTCTGACAGGCACCAA	59.969	61.111	13.94	0.00	0.00	3.67
1616	2285	3.833650	TGGATTGCAAATGATGACCTTGT	59.166	39.130	1.71	0.00	0.00	3.16
1622	2291	4.760878	CACCATTGGATTGCAAATGATGA	58.239	39.130	10.37	0.00	36.13	2.92
1641	2310	5.125100	TCAAGTTCAAGATCAATTGCACC	57.875	39.130	0.00	0.00	28.03	5.01
1705	2374	9.897744	TGAGTTTATCAAAGTCATTCAAACATC	57.102	29.630	5.30	0.00	43.82	3.06
1734	2403	7.166638	CACGTCACAACTAAATAAAATTGCACA	59.833	33.333	0.00	0.00	0.00	4.57
1752	2421	6.481976	AGTTTCTAAATCAATGACACGTCACA	59.518	34.615	1.15	0.00	43.11	3.58
1794	2463	9.362151	ACCTTTTGTGACTCCTAAATATTCAAA	57.638	29.630	0.00	0.00	0.00	2.69
1810	2479	6.335471	TGACTCGAGTATTACCTTTTGTGA	57.665	37.500	20.09	0.00	0.00	3.58
1830	2499	2.497273	CCATTTGGGGACTCCATTTGAC	59.503	50.000	0.00	0.00	46.52	3.18
1923	2592	3.007940	TGAAGACTTGTAGTCCCACCATG	59.992	47.826	3.33	0.00	46.18	3.66
1975	2644	6.262944	TGCACAACTGAGTTTATCAAAGTCAT	59.737	34.615	9.06	0.00	46.52	3.06
2066	2744	8.985805	GTCCTAAATATTTAACATAGGTGGACG	58.014	37.037	16.76	1.43	35.64	4.79
2155	2833	7.716799	AACCAGGCACATCATAATCTTTTAA	57.283	32.000	0.00	0.00	0.00	1.52
2164	2842	2.026729	TCCGAAAACCAGGCACATCATA	60.027	45.455	0.00	0.00	0.00	2.15
2166	2844	0.109532	TCCGAAAACCAGGCACATCA	59.890	50.000	0.00	0.00	0.00	3.07
2243	2921	7.970614	GGTTGAGAGTAAATGATTGATCAAACC	59.029	37.037	13.09	6.34	40.69	3.27
2289	2967	6.627395	TTTCGATAGTCTCTCTTCAGATCC	57.373	41.667	0.00	0.00	37.40	3.36
2312	2990	9.480053	CACTTTGATCCAACAATTCTTTAACAT	57.520	29.630	0.00	0.00	0.00	2.71
2373	3051	1.824230	GCCCAAACATTATCTGGTGCA	59.176	47.619	0.00	0.00	0.00	4.57
2403	3081	2.400399	TCCTTGTTGTTCTTACGAGCG	58.600	47.619	0.00	0.00	0.00	5.03
2417	3095	1.355381	TCCATTGCAGGACATCCTTGT	59.645	47.619	0.00	0.00	46.09	3.16
2427	3105	2.892852	TGACCTTTCTTTCCATTGCAGG	59.107	45.455	0.00	0.00	0.00	4.85
2500	3180	8.702163	AAATAAGCTACAATGTAAATGGCAAC	57.298	30.769	0.00	0.00	0.00	4.17
2503	3183	9.586435	AGAAAAATAAGCTACAATGTAAATGGC	57.414	29.630	0.00	0.00	0.00	4.40
2590	3270	2.429610	TCCCTTCAGCATAACGACCTAC	59.570	50.000	0.00	0.00	0.00	3.18
2621	3301	4.838986	TCCTAGTATAATGGTCCAAGCCTC	59.161	45.833	0.00	0.00	0.00	4.70
2676	3356	1.819288	AGATCCGTCACTTGTGTCGAT	59.181	47.619	18.52	11.41	0.00	3.59
2691	3371	4.999950	GGTGATGGTGATTGATACAGATCC	59.000	45.833	0.00	0.00	0.00	3.36
2832	3512	4.517285	TCTCCATTTGTGTAGATCTTGGC	58.483	43.478	0.00	0.00	0.00	4.52
3013	3693	3.955551	TGTAAACCTTCCAACCCTTCAAC	59.044	43.478	0.00	0.00	0.00	3.18
3031	3711	7.147567	TGCCATCAACATATCTCCTAGTTGTAA	60.148	37.037	0.00	0.00	41.43	2.41
3105	3785	5.651139	AGCCAGTCGTAGTTCATTAGTAGAA	59.349	40.000	0.00	0.00	0.00	2.10
3162	3842	5.128499	CCACAATGGCTAATTTTGATGGGTA	59.872	40.000	0.00	0.00	28.90	3.69
3200	3891	6.842676	AGCTTCCCTAAAATAGAACCTATGG	58.157	40.000	0.00	0.00	0.00	2.74
3502	4197	3.694926	AGAGAAGCTGGGAATCAAAAGG	58.305	45.455	0.00	0.00	0.00	3.11
3596	4291	4.764172	AGAATACTGCTGTGGAGATTGAC	58.236	43.478	6.48	0.00	0.00	3.18
3662	4357	2.917933	TCAGTTGCTAGTTGTGTGCTT	58.082	42.857	0.00	0.00	0.00	3.91
3748	4443	9.567776	ACCATATCGAGAGGACTATTGATATAG	57.432	37.037	13.56	10.47	39.75	1.31
3753	4448	6.294010	CGAAACCATATCGAGAGGACTATTGA	60.294	42.308	7.49	0.00	42.76	2.57
3759	4454	2.621998	TCCGAAACCATATCGAGAGGAC	59.378	50.000	7.49	0.00	42.76	3.85
3791	4486	7.852971	TTACAAGGAATTATTCAACCTACGG	57.147	36.000	7.29	0.00	32.06	4.02
3878	4573	4.798924	GCAAATACACCACAATTTCTGGCA	60.799	41.667	0.00	0.00	31.13	4.92
3909	4604	6.152154	CCCGGAAAATTTTACCTTGTAGATGT	59.848	38.462	0.73	0.00	0.00	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.