Multiple sequence alignment - TraesCS7B01G114700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G114700 chr7B 100.000 2213 0 0 1 2213 133423754 133421542 0.000000e+00 4087.0
1 TraesCS7B01G114700 chr7B 100.000 44 0 0 2468 2511 133421287 133421244 5.760000e-12 82.4
2 TraesCS7B01G114700 chr7A 85.942 1003 64 36 790 1726 170585937 170584946 0.000000e+00 1000.0
3 TraesCS7B01G114700 chr7A 89.474 475 38 7 1743 2213 170567200 170566734 7.740000e-165 590.0
4 TraesCS7B01G114700 chr7A 89.520 229 20 4 551 777 219906886 219906660 1.140000e-73 287.0
5 TraesCS7B01G114700 chr7A 94.326 141 8 0 55 195 170586520 170586380 1.510000e-52 217.0
6 TraesCS7B01G114700 chr7A 85.128 195 16 6 203 391 170586123 170585936 1.190000e-43 187.0
7 TraesCS7B01G114700 chr7A 86.391 169 10 5 408 564 108822636 108822469 3.320000e-39 172.0
8 TraesCS7B01G114700 chr7A 83.832 167 17 2 408 564 429374458 429374292 1.560000e-32 150.0
9 TraesCS7B01G114700 chr7A 100.000 28 0 0 388 415 108822668 108822641 5.000000e-03 52.8
10 TraesCS7B01G114700 chr7D 95.010 501 19 4 1278 1773 168252319 168251820 0.000000e+00 782.0
11 TraesCS7B01G114700 chr7D 92.769 484 23 6 790 1261 168252846 168252363 0.000000e+00 689.0
12 TraesCS7B01G114700 chr7D 87.297 370 35 9 1769 2132 168251771 168251408 1.800000e-111 412.0
13 TraesCS7B01G114700 chr7D 93.562 233 10 3 1 233 168253147 168252920 2.390000e-90 342.0
14 TraesCS7B01G114700 chr7D 94.231 52 3 0 340 391 168252896 168252845 2.070000e-11 80.5
15 TraesCS7B01G114700 chr3B 92.453 212 15 1 567 778 335697054 335696844 4.060000e-78 302.0
16 TraesCS7B01G114700 chr3B 86.228 167 12 3 408 564 795224507 795224342 1.190000e-38 171.0
17 TraesCS7B01G114700 chr2A 91.403 221 18 1 557 777 333742188 333742407 4.060000e-78 302.0
18 TraesCS7B01G114700 chr2A 89.655 87 6 1 478 564 750145937 750146020 9.500000e-20 108.0
19 TraesCS7B01G114700 chr1D 91.705 217 18 0 561 777 2856071 2855855 4.060000e-78 302.0
20 TraesCS7B01G114700 chr5B 90.749 227 17 2 555 777 685637548 685637322 1.460000e-77 300.0
21 TraesCS7B01G114700 chr3D 90.950 221 20 0 561 781 2720098 2719878 5.250000e-77 298.0
22 TraesCS7B01G114700 chr3D 83.158 190 18 4 389 564 613961379 613961568 7.190000e-36 161.0
23 TraesCS7B01G114700 chr3D 90.667 75 7 0 1357 1431 286894112 286894038 1.590000e-17 100.0
24 TraesCS7B01G114700 chr6D 90.950 221 15 5 561 778 328108031 328108249 2.440000e-75 292.0
25 TraesCS7B01G114700 chr5D 90.909 220 16 4 561 777 421982585 421982367 2.440000e-75 292.0
26 TraesCS7B01G114700 chr1A 88.462 234 25 2 547 780 220979067 220979298 5.290000e-72 281.0
27 TraesCS7B01G114700 chr1B 88.623 167 9 2 408 564 362277 362111 7.090000e-46 195.0
28 TraesCS7B01G114700 chr1B 87.273 165 11 8 410 564 360543 360379 1.980000e-41 180.0
29 TraesCS7B01G114700 chr1B 85.542 166 14 5 408 563 681518604 681518439 5.560000e-37 165.0
30 TraesCS7B01G114700 chr1B 85.915 142 10 2 407 538 631903518 631903659 2.600000e-30 143.0
31 TraesCS7B01G114700 chr5A 86.228 167 12 3 408 564 8073121 8073286 1.190000e-38 171.0
32 TraesCS7B01G114700 chr5A 85.455 165 14 2 408 562 505641502 505641666 2.000000e-36 163.0
33 TraesCS7B01G114700 chr5A 92.045 88 7 0 408 495 11374149 11374236 9.430000e-25 124.0
34 TraesCS7B01G114700 chr4D 86.145 166 13 2 408 563 464227297 464227462 1.190000e-38 171.0
35 TraesCS7B01G114700 chr3A 85.535 159 14 2 408 557 577558667 577558509 9.300000e-35 158.0
36 TraesCS7B01G114700 chr6B 81.522 184 18 11 391 563 382767054 382766876 1.210000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G114700 chr7B 133421244 133423754 2510 True 2084.7 4087 100.000000 1 2511 2 chr7B.!!$R1 2510
1 TraesCS7B01G114700 chr7A 170584946 170586520 1574 True 468.0 1000 88.465333 55 1726 3 chr7A.!!$R5 1671
2 TraesCS7B01G114700 chr7D 168251408 168253147 1739 True 461.1 782 92.573800 1 2132 5 chr7D.!!$R1 2131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 862 0.037232 GCGCATACCCCTAGGACATC 60.037 60.0 11.48 0.0 36.73 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2431 0.811281 AATCAACCAAGCGCCTTAGC 59.189 50.0 2.29 0.0 37.41 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.694213 GGAAGCTCAAGTCTGACTTCC 58.306 52.381 19.65 13.24 44.01 3.46
161 162 0.253610 AAGTGTCGTGAAACCCACCA 59.746 50.000 0.00 0.00 42.76 4.17
171 172 3.860930 AACCCACCACACGCCATCC 62.861 63.158 0.00 0.00 0.00 3.51
241 491 2.438434 ACCACATGGCTTAGCGGC 60.438 61.111 0.00 0.00 39.32 6.53
264 517 8.973378 CGGCATTTTACATTCTTTTACTTCAAA 58.027 29.630 0.00 0.00 0.00 2.69
279 532 4.895961 ACTTCAAAGTTCAGGGTACTAGC 58.104 43.478 0.00 0.00 35.21 3.42
280 533 4.347000 ACTTCAAAGTTCAGGGTACTAGCA 59.653 41.667 0.00 0.00 35.21 3.49
282 535 4.894784 TCAAAGTTCAGGGTACTAGCAAG 58.105 43.478 0.00 0.00 0.00 4.01
283 536 4.591498 TCAAAGTTCAGGGTACTAGCAAGA 59.409 41.667 0.00 0.00 0.00 3.02
285 538 4.744795 AGTTCAGGGTACTAGCAAGATG 57.255 45.455 0.00 0.00 0.00 2.90
286 539 4.353777 AGTTCAGGGTACTAGCAAGATGA 58.646 43.478 0.00 0.00 0.00 2.92
287 540 4.777896 AGTTCAGGGTACTAGCAAGATGAA 59.222 41.667 0.00 0.00 0.00 2.57
288 541 5.105146 AGTTCAGGGTACTAGCAAGATGAAG 60.105 44.000 0.00 0.00 0.00 3.02
289 542 4.353777 TCAGGGTACTAGCAAGATGAAGT 58.646 43.478 0.00 0.00 0.00 3.01
292 545 4.532521 AGGGTACTAGCAAGATGAAGTTGT 59.467 41.667 0.00 0.00 0.00 3.32
295 548 6.166982 GGTACTAGCAAGATGAAGTTGTCTT 58.833 40.000 0.00 0.00 35.15 3.01
297 550 6.551385 ACTAGCAAGATGAAGTTGTCTTTG 57.449 37.500 0.00 0.00 32.60 2.77
298 551 4.843220 AGCAAGATGAAGTTGTCTTTGG 57.157 40.909 0.00 0.00 32.60 3.28
299 552 3.005155 AGCAAGATGAAGTTGTCTTTGGC 59.995 43.478 0.00 1.48 32.60 4.52
300 553 3.858503 GCAAGATGAAGTTGTCTTTGGCC 60.859 47.826 0.00 0.00 32.60 5.36
301 554 2.519013 AGATGAAGTTGTCTTTGGCCC 58.481 47.619 0.00 0.00 33.64 5.80
302 555 1.200020 GATGAAGTTGTCTTTGGCCCG 59.800 52.381 0.00 0.00 33.64 6.13
303 556 0.821711 TGAAGTTGTCTTTGGCCCGG 60.822 55.000 0.00 0.00 33.64 5.73
312 565 1.077334 TCTTTGGCCCGGGGAAATAAA 59.923 47.619 25.28 10.34 0.00 1.40
316 569 1.672854 GGCCCGGGGAAATAAACTGC 61.673 60.000 25.28 1.93 0.00 4.40
324 577 3.306710 GGGGAAATAAACTGCCACCTTTG 60.307 47.826 0.00 0.00 0.00 2.77
343 596 1.868498 TGTTTCAAGGACGCGTTTAGG 59.132 47.619 15.53 4.21 0.00 2.69
347 600 0.949105 CAAGGACGCGTTTAGGTGCT 60.949 55.000 15.53 0.00 36.31 4.40
391 647 7.164171 GCACAACATCGTACATTTAATGCTAAG 59.836 37.037 4.68 0.66 0.00 2.18
392 648 7.639850 CACAACATCGTACATTTAATGCTAAGG 59.360 37.037 4.68 0.00 0.00 2.69
393 649 6.300354 ACATCGTACATTTAATGCTAAGGC 57.700 37.500 4.68 0.00 39.26 4.35
394 650 6.055588 ACATCGTACATTTAATGCTAAGGCT 58.944 36.000 4.68 0.00 39.59 4.58
395 651 5.984233 TCGTACATTTAATGCTAAGGCTG 57.016 39.130 4.68 0.00 39.59 4.85
396 652 4.272504 TCGTACATTTAATGCTAAGGCTGC 59.727 41.667 4.68 0.00 39.59 5.25
397 653 4.554723 CGTACATTTAATGCTAAGGCTGCC 60.555 45.833 11.65 11.65 39.59 4.85
398 654 2.695147 ACATTTAATGCTAAGGCTGCCC 59.305 45.455 16.57 0.00 39.59 5.36
399 655 1.388547 TTTAATGCTAAGGCTGCCCG 58.611 50.000 16.57 5.42 39.59 6.13
400 656 0.254747 TTAATGCTAAGGCTGCCCGT 59.745 50.000 16.57 6.37 39.59 5.28
401 657 1.124780 TAATGCTAAGGCTGCCCGTA 58.875 50.000 16.57 7.30 39.59 4.02
402 658 0.254747 AATGCTAAGGCTGCCCGTAA 59.745 50.000 16.57 0.00 39.59 3.18
403 659 0.474184 ATGCTAAGGCTGCCCGTAAT 59.526 50.000 16.57 0.08 39.59 1.89
404 660 0.463654 TGCTAAGGCTGCCCGTAATG 60.464 55.000 16.57 1.27 39.59 1.90
405 661 0.179056 GCTAAGGCTGCCCGTAATGA 60.179 55.000 16.57 0.00 35.76 2.57
406 662 1.871080 CTAAGGCTGCCCGTAATGAG 58.129 55.000 16.57 0.00 35.76 2.90
407 663 1.412710 CTAAGGCTGCCCGTAATGAGA 59.587 52.381 16.57 0.00 35.76 3.27
408 664 0.179000 AAGGCTGCCCGTAATGAGAG 59.821 55.000 16.57 0.00 35.76 3.20
409 665 0.978146 AGGCTGCCCGTAATGAGAGT 60.978 55.000 16.57 0.00 35.76 3.24
410 666 0.750850 GGCTGCCCGTAATGAGAGTA 59.249 55.000 7.66 0.00 0.00 2.59
411 667 1.344763 GGCTGCCCGTAATGAGAGTAT 59.655 52.381 7.66 0.00 0.00 2.12
412 668 2.610727 GGCTGCCCGTAATGAGAGTATC 60.611 54.545 7.66 0.00 0.00 2.24
413 669 2.035961 GCTGCCCGTAATGAGAGTATCA 59.964 50.000 0.00 0.00 43.70 2.15
423 679 3.564053 TGAGAGTATCATGCATGCCAA 57.436 42.857 22.25 5.34 37.82 4.52
424 680 3.208594 TGAGAGTATCATGCATGCCAAC 58.791 45.455 22.25 17.59 37.82 3.77
425 681 3.118149 TGAGAGTATCATGCATGCCAACT 60.118 43.478 22.25 21.56 37.82 3.16
426 682 4.101430 TGAGAGTATCATGCATGCCAACTA 59.899 41.667 22.25 3.72 37.82 2.24
427 683 5.039920 AGAGTATCATGCATGCCAACTAA 57.960 39.130 22.25 2.92 37.82 2.24
428 684 5.439721 AGAGTATCATGCATGCCAACTAAA 58.560 37.500 22.25 2.12 37.82 1.85
429 685 5.297776 AGAGTATCATGCATGCCAACTAAAC 59.702 40.000 22.25 11.79 37.82 2.01
430 686 4.949238 AGTATCATGCATGCCAACTAAACA 59.051 37.500 22.25 0.53 0.00 2.83
431 687 4.804868 ATCATGCATGCCAACTAAACAA 57.195 36.364 22.25 0.00 0.00 2.83
432 688 4.804868 TCATGCATGCCAACTAAACAAT 57.195 36.364 22.25 0.00 0.00 2.71
433 689 5.149973 TCATGCATGCCAACTAAACAATT 57.850 34.783 22.25 0.00 0.00 2.32
434 690 5.549347 TCATGCATGCCAACTAAACAATTT 58.451 33.333 22.25 0.00 0.00 1.82
435 691 5.996513 TCATGCATGCCAACTAAACAATTTT 59.003 32.000 22.25 0.00 0.00 1.82
436 692 5.670149 TGCATGCCAACTAAACAATTTTG 57.330 34.783 16.68 0.00 0.00 2.44
437 693 5.363101 TGCATGCCAACTAAACAATTTTGA 58.637 33.333 16.68 0.00 0.00 2.69
438 694 5.996513 TGCATGCCAACTAAACAATTTTGAT 59.003 32.000 16.68 0.00 0.00 2.57
439 695 6.073167 TGCATGCCAACTAAACAATTTTGATG 60.073 34.615 16.68 0.00 0.00 3.07
440 696 6.147492 GCATGCCAACTAAACAATTTTGATGA 59.853 34.615 6.36 0.00 0.00 2.92
441 697 7.622672 GCATGCCAACTAAACAATTTTGATGAG 60.623 37.037 6.36 0.00 0.00 2.90
442 698 6.222389 TGCCAACTAAACAATTTTGATGAGG 58.778 36.000 0.00 0.00 0.00 3.86
443 699 6.183360 TGCCAACTAAACAATTTTGATGAGGT 60.183 34.615 0.00 0.00 0.00 3.85
444 700 6.146021 GCCAACTAAACAATTTTGATGAGGTG 59.854 38.462 0.00 0.00 0.00 4.00
445 701 6.646240 CCAACTAAACAATTTTGATGAGGTGG 59.354 38.462 7.42 7.42 36.11 4.61
446 702 5.783111 ACTAAACAATTTTGATGAGGTGGC 58.217 37.500 0.00 0.00 0.00 5.01
447 703 4.686191 AAACAATTTTGATGAGGTGGCA 57.314 36.364 0.00 0.00 0.00 4.92
448 704 4.895668 AACAATTTTGATGAGGTGGCAT 57.104 36.364 0.00 0.00 0.00 4.40
449 705 4.196626 ACAATTTTGATGAGGTGGCATG 57.803 40.909 0.00 0.00 0.00 4.06
450 706 3.833650 ACAATTTTGATGAGGTGGCATGA 59.166 39.130 0.00 0.00 0.00 3.07
451 707 4.283978 ACAATTTTGATGAGGTGGCATGAA 59.716 37.500 0.00 0.00 0.00 2.57
452 708 5.221682 ACAATTTTGATGAGGTGGCATGAAA 60.222 36.000 0.00 0.00 31.17 2.69
453 709 5.687166 ATTTTGATGAGGTGGCATGAAAT 57.313 34.783 0.00 0.00 32.77 2.17
454 710 5.486735 TTTTGATGAGGTGGCATGAAATT 57.513 34.783 0.00 0.00 32.77 1.82
455 711 6.602410 TTTTGATGAGGTGGCATGAAATTA 57.398 33.333 0.00 0.00 32.77 1.40
456 712 6.602410 TTTGATGAGGTGGCATGAAATTAA 57.398 33.333 0.00 0.00 28.68 1.40
457 713 6.602410 TTGATGAGGTGGCATGAAATTAAA 57.398 33.333 0.00 0.00 0.00 1.52
458 714 6.795144 TGATGAGGTGGCATGAAATTAAAT 57.205 33.333 0.00 0.00 0.00 1.40
459 715 6.575267 TGATGAGGTGGCATGAAATTAAATG 58.425 36.000 0.00 0.00 0.00 2.32
460 716 6.380560 TGATGAGGTGGCATGAAATTAAATGA 59.619 34.615 0.00 0.00 0.00 2.57
461 717 6.602410 TGAGGTGGCATGAAATTAAATGAA 57.398 33.333 0.00 0.00 0.00 2.57
462 718 6.632909 TGAGGTGGCATGAAATTAAATGAAG 58.367 36.000 0.00 0.00 0.00 3.02
463 719 6.436847 TGAGGTGGCATGAAATTAAATGAAGA 59.563 34.615 0.00 0.00 0.00 2.87
464 720 7.039152 TGAGGTGGCATGAAATTAAATGAAGAA 60.039 33.333 0.00 0.00 0.00 2.52
465 721 7.678837 AGGTGGCATGAAATTAAATGAAGAAA 58.321 30.769 0.00 0.00 0.00 2.52
466 722 8.156165 AGGTGGCATGAAATTAAATGAAGAAAA 58.844 29.630 0.00 0.00 0.00 2.29
467 723 8.782144 GGTGGCATGAAATTAAATGAAGAAAAA 58.218 29.630 0.00 0.00 0.00 1.94
468 724 9.815936 GTGGCATGAAATTAAATGAAGAAAAAG 57.184 29.630 0.00 0.00 0.00 2.27
469 725 9.775854 TGGCATGAAATTAAATGAAGAAAAAGA 57.224 25.926 0.00 0.00 0.00 2.52
520 776 6.768029 ATGTTGTGTTATTTTGTGTCATGC 57.232 33.333 0.00 0.00 0.00 4.06
521 777 5.654497 TGTTGTGTTATTTTGTGTCATGCA 58.346 33.333 0.00 0.00 0.00 3.96
522 778 6.279123 TGTTGTGTTATTTTGTGTCATGCAT 58.721 32.000 0.00 0.00 0.00 3.96
523 779 6.200475 TGTTGTGTTATTTTGTGTCATGCATG 59.800 34.615 21.07 21.07 0.00 4.06
524 780 6.081872 TGTGTTATTTTGTGTCATGCATGA 57.918 33.333 25.42 25.42 0.00 3.07
540 796 8.393671 TCATGCATGACAATAAATATAGTGCA 57.606 30.769 25.42 0.00 43.17 4.57
542 798 9.634163 CATGCATGACAATAAATATAGTGCATT 57.366 29.630 22.59 0.00 45.33 3.56
567 823 9.560860 TTATGATACCAACATATGATACTCCCT 57.439 33.333 10.38 0.00 31.64 4.20
568 824 7.482169 TGATACCAACATATGATACTCCCTC 57.518 40.000 10.38 0.00 0.00 4.30
569 825 7.248976 TGATACCAACATATGATACTCCCTCT 58.751 38.462 10.38 0.00 0.00 3.69
570 826 7.397476 TGATACCAACATATGATACTCCCTCTC 59.603 40.741 10.38 0.00 0.00 3.20
571 827 5.721225 ACCAACATATGATACTCCCTCTCT 58.279 41.667 10.38 0.00 0.00 3.10
572 828 5.777732 ACCAACATATGATACTCCCTCTCTC 59.222 44.000 10.38 0.00 0.00 3.20
573 829 5.777223 CCAACATATGATACTCCCTCTCTCA 59.223 44.000 10.38 0.00 0.00 3.27
574 830 6.268617 CCAACATATGATACTCCCTCTCTCAA 59.731 42.308 10.38 0.00 0.00 3.02
575 831 7.038445 CCAACATATGATACTCCCTCTCTCAAT 60.038 40.741 10.38 0.00 0.00 2.57
576 832 8.373981 CAACATATGATACTCCCTCTCTCAATT 58.626 37.037 10.38 0.00 0.00 2.32
577 833 8.503428 ACATATGATACTCCCTCTCTCAATTT 57.497 34.615 10.38 0.00 0.00 1.82
578 834 9.607333 ACATATGATACTCCCTCTCTCAATTTA 57.393 33.333 10.38 0.00 0.00 1.40
579 835 9.868277 CATATGATACTCCCTCTCTCAATTTAC 57.132 37.037 0.00 0.00 0.00 2.01
580 836 7.921041 ATGATACTCCCTCTCTCAATTTACA 57.079 36.000 0.00 0.00 0.00 2.41
581 837 7.733773 TGATACTCCCTCTCTCAATTTACAA 57.266 36.000 0.00 0.00 0.00 2.41
582 838 7.786030 TGATACTCCCTCTCTCAATTTACAAG 58.214 38.462 0.00 0.00 0.00 3.16
583 839 5.428184 ACTCCCTCTCTCAATTTACAAGG 57.572 43.478 0.00 0.00 0.00 3.61
584 840 4.195416 CTCCCTCTCTCAATTTACAAGGC 58.805 47.826 0.00 0.00 0.00 4.35
585 841 2.939103 CCCTCTCTCAATTTACAAGGCG 59.061 50.000 0.00 0.00 0.00 5.52
586 842 3.600388 CCTCTCTCAATTTACAAGGCGT 58.400 45.455 0.00 0.00 0.00 5.68
587 843 3.372206 CCTCTCTCAATTTACAAGGCGTG 59.628 47.826 0.00 0.00 0.00 5.34
588 844 2.742053 TCTCTCAATTTACAAGGCGTGC 59.258 45.455 0.00 0.00 0.00 5.34
589 845 1.463056 TCTCAATTTACAAGGCGTGCG 59.537 47.619 0.00 0.00 0.00 5.34
590 846 0.109964 TCAATTTACAAGGCGTGCGC 60.110 50.000 8.17 8.17 41.06 6.09
591 847 0.386605 CAATTTACAAGGCGTGCGCA 60.387 50.000 18.36 5.66 44.11 6.09
592 848 0.525761 AATTTACAAGGCGTGCGCAT 59.474 45.000 15.91 8.56 44.11 4.73
593 849 1.374560 ATTTACAAGGCGTGCGCATA 58.625 45.000 15.91 0.00 44.11 3.14
594 850 0.444651 TTTACAAGGCGTGCGCATAC 59.555 50.000 15.91 9.00 44.11 2.39
595 851 1.363145 TTACAAGGCGTGCGCATACC 61.363 55.000 15.91 18.85 44.11 2.73
596 852 3.876198 CAAGGCGTGCGCATACCC 61.876 66.667 23.46 18.73 44.11 3.69
599 855 4.230002 GGCGTGCGCATACCCCTA 62.230 66.667 15.91 0.00 44.11 3.53
600 856 2.661866 GCGTGCGCATACCCCTAG 60.662 66.667 15.91 0.00 41.49 3.02
601 857 2.029073 CGTGCGCATACCCCTAGG 59.971 66.667 15.91 0.06 40.04 3.02
602 858 2.495409 CGTGCGCATACCCCTAGGA 61.495 63.158 15.91 0.00 36.73 2.94
603 859 1.069258 GTGCGCATACCCCTAGGAC 59.931 63.158 15.91 0.00 36.73 3.85
604 860 1.382009 TGCGCATACCCCTAGGACA 60.382 57.895 11.48 0.00 36.73 4.02
605 861 0.762842 TGCGCATACCCCTAGGACAT 60.763 55.000 11.48 0.00 36.73 3.06
606 862 0.037232 GCGCATACCCCTAGGACATC 60.037 60.000 11.48 0.00 36.73 3.06
607 863 1.338107 CGCATACCCCTAGGACATCA 58.662 55.000 11.48 0.00 36.73 3.07
608 864 1.691976 CGCATACCCCTAGGACATCAA 59.308 52.381 11.48 0.00 36.73 2.57
609 865 2.303022 CGCATACCCCTAGGACATCAAT 59.697 50.000 11.48 0.00 36.73 2.57
610 866 3.244561 CGCATACCCCTAGGACATCAATT 60.245 47.826 11.48 0.00 36.73 2.32
611 867 4.729868 GCATACCCCTAGGACATCAATTT 58.270 43.478 11.48 0.00 36.73 1.82
612 868 4.520492 GCATACCCCTAGGACATCAATTTG 59.480 45.833 11.48 0.00 36.73 2.32
613 869 5.690097 GCATACCCCTAGGACATCAATTTGA 60.690 44.000 11.48 0.75 36.73 2.69
614 870 4.236527 ACCCCTAGGACATCAATTTGAC 57.763 45.455 11.48 0.00 36.73 3.18
615 871 3.053619 ACCCCTAGGACATCAATTTGACC 60.054 47.826 11.48 0.00 36.73 4.02
616 872 3.053693 CCCCTAGGACATCAATTTGACCA 60.054 47.826 11.48 0.00 34.42 4.02
617 873 4.569653 CCCCTAGGACATCAATTTGACCAA 60.570 45.833 11.48 0.00 34.42 3.67
618 874 4.399303 CCCTAGGACATCAATTTGACCAAC 59.601 45.833 11.48 0.00 34.42 3.77
619 875 4.399303 CCTAGGACATCAATTTGACCAACC 59.601 45.833 1.05 3.86 34.42 3.77
620 876 4.118168 AGGACATCAATTTGACCAACCT 57.882 40.909 0.15 5.95 34.42 3.50
621 877 5.255397 AGGACATCAATTTGACCAACCTA 57.745 39.130 0.15 0.00 34.42 3.08
622 878 5.640147 AGGACATCAATTTGACCAACCTAA 58.360 37.500 0.15 0.00 34.42 2.69
623 879 6.256053 AGGACATCAATTTGACCAACCTAAT 58.744 36.000 0.15 0.00 34.42 1.73
624 880 7.410174 AGGACATCAATTTGACCAACCTAATA 58.590 34.615 0.15 0.00 34.42 0.98
625 881 7.557719 AGGACATCAATTTGACCAACCTAATAG 59.442 37.037 0.15 0.00 34.42 1.73
626 882 7.556275 GGACATCAATTTGACCAACCTAATAGA 59.444 37.037 0.15 0.00 32.58 1.98
627 883 8.877864 ACATCAATTTGACCAACCTAATAGAA 57.122 30.769 0.15 0.00 0.00 2.10
628 884 8.960591 ACATCAATTTGACCAACCTAATAGAAG 58.039 33.333 0.15 0.00 0.00 2.85
629 885 8.960591 CATCAATTTGACCAACCTAATAGAAGT 58.039 33.333 0.15 0.00 0.00 3.01
630 886 8.561738 TCAATTTGACCAACCTAATAGAAGTC 57.438 34.615 0.00 0.00 0.00 3.01
631 887 8.160765 TCAATTTGACCAACCTAATAGAAGTCA 58.839 33.333 0.00 0.00 0.00 3.41
632 888 8.960591 CAATTTGACCAACCTAATAGAAGTCAT 58.039 33.333 0.00 0.00 33.21 3.06
684 940 8.574196 ACTTCAGATGTTTTATTTTCAAACGG 57.426 30.769 0.00 0.00 37.00 4.44
685 941 8.194769 ACTTCAGATGTTTTATTTTCAAACGGT 58.805 29.630 0.00 0.00 37.00 4.83
686 942 9.672086 CTTCAGATGTTTTATTTTCAAACGGTA 57.328 29.630 0.00 0.00 37.00 4.02
730 986 8.706035 AGTTTATATTACGACGATACAATTGCC 58.294 33.333 5.05 0.00 0.00 4.52
731 987 8.489559 GTTTATATTACGACGATACAATTGCCA 58.510 33.333 5.05 0.00 0.00 4.92
732 988 8.590719 TTATATTACGACGATACAATTGCCAA 57.409 30.769 5.05 0.00 0.00 4.52
733 989 4.587211 TTACGACGATACAATTGCCAAC 57.413 40.909 5.05 0.00 0.00 3.77
734 990 1.735571 ACGACGATACAATTGCCAACC 59.264 47.619 5.05 0.00 0.00 3.77
735 991 2.006888 CGACGATACAATTGCCAACCT 58.993 47.619 5.05 0.00 0.00 3.50
736 992 3.191669 CGACGATACAATTGCCAACCTA 58.808 45.455 5.05 0.00 0.00 3.08
737 993 3.245284 CGACGATACAATTGCCAACCTAG 59.755 47.826 5.05 0.00 0.00 3.02
738 994 3.541632 ACGATACAATTGCCAACCTAGG 58.458 45.455 7.41 7.41 0.00 3.02
739 995 3.054655 ACGATACAATTGCCAACCTAGGT 60.055 43.478 9.21 9.21 0.00 3.08
740 996 4.162698 ACGATACAATTGCCAACCTAGGTA 59.837 41.667 16.67 0.00 0.00 3.08
741 997 5.163237 ACGATACAATTGCCAACCTAGGTAT 60.163 40.000 16.67 0.83 0.00 2.73
742 998 6.042322 ACGATACAATTGCCAACCTAGGTATA 59.958 38.462 16.67 0.00 0.00 1.47
743 999 7.103641 CGATACAATTGCCAACCTAGGTATAT 58.896 38.462 16.67 0.00 0.00 0.86
744 1000 7.064609 CGATACAATTGCCAACCTAGGTATATG 59.935 40.741 16.67 10.11 0.00 1.78
745 1001 4.827284 ACAATTGCCAACCTAGGTATATGC 59.173 41.667 16.67 15.36 0.00 3.14
746 1002 2.831685 TGCCAACCTAGGTATATGCG 57.168 50.000 16.67 5.63 0.00 4.73
747 1003 1.270625 TGCCAACCTAGGTATATGCGC 60.271 52.381 16.67 14.94 0.00 6.09
748 1004 1.270625 GCCAACCTAGGTATATGCGCA 60.271 52.381 16.67 14.96 0.00 6.09
749 1005 2.688507 CCAACCTAGGTATATGCGCAG 58.311 52.381 16.67 0.24 0.00 5.18
750 1006 2.612972 CCAACCTAGGTATATGCGCAGG 60.613 54.545 16.67 11.62 0.00 4.85
751 1007 2.299013 CAACCTAGGTATATGCGCAGGA 59.701 50.000 16.67 6.76 0.00 3.86
752 1008 1.893801 ACCTAGGTATATGCGCAGGAC 59.106 52.381 18.32 13.31 0.00 3.85
753 1009 2.171840 CCTAGGTATATGCGCAGGACT 58.828 52.381 18.32 11.85 0.00 3.85
754 1010 2.563179 CCTAGGTATATGCGCAGGACTT 59.437 50.000 18.32 12.28 0.00 3.01
755 1011 2.533266 AGGTATATGCGCAGGACTTG 57.467 50.000 18.32 0.00 0.00 3.16
756 1012 1.762957 AGGTATATGCGCAGGACTTGT 59.237 47.619 18.32 0.00 0.00 3.16
757 1013 2.963101 AGGTATATGCGCAGGACTTGTA 59.037 45.455 18.32 0.83 0.00 2.41
758 1014 3.386726 AGGTATATGCGCAGGACTTGTAA 59.613 43.478 18.32 0.00 0.00 2.41
759 1015 4.124238 GGTATATGCGCAGGACTTGTAAA 58.876 43.478 18.32 0.00 0.00 2.01
760 1016 4.025145 GGTATATGCGCAGGACTTGTAAAC 60.025 45.833 18.32 1.99 0.00 2.01
761 1017 2.185004 ATGCGCAGGACTTGTAAACT 57.815 45.000 18.32 0.00 0.00 2.66
762 1018 1.225855 TGCGCAGGACTTGTAAACTG 58.774 50.000 5.66 0.00 0.00 3.16
763 1019 1.202592 TGCGCAGGACTTGTAAACTGA 60.203 47.619 5.66 0.00 32.86 3.41
764 1020 1.871039 GCGCAGGACTTGTAAACTGAA 59.129 47.619 0.30 0.00 32.86 3.02
765 1021 2.289547 GCGCAGGACTTGTAAACTGAAA 59.710 45.455 0.30 0.00 32.86 2.69
766 1022 3.848554 GCGCAGGACTTGTAAACTGAAAC 60.849 47.826 0.30 0.00 32.86 2.78
767 1023 3.603857 CGCAGGACTTGTAAACTGAAACG 60.604 47.826 0.00 0.00 32.86 3.60
768 1024 3.303791 GCAGGACTTGTAAACTGAAACGG 60.304 47.826 0.00 0.00 32.86 4.44
769 1025 4.124238 CAGGACTTGTAAACTGAAACGGA 58.876 43.478 0.00 0.00 32.86 4.69
770 1026 4.211374 CAGGACTTGTAAACTGAAACGGAG 59.789 45.833 0.00 0.00 32.86 4.63
771 1027 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
772 1028 3.473625 ACTTGTAAACTGAAACGGAGGG 58.526 45.455 0.00 0.00 0.00 4.30
773 1029 3.135167 ACTTGTAAACTGAAACGGAGGGA 59.865 43.478 0.00 0.00 0.00 4.20
774 1030 3.396260 TGTAAACTGAAACGGAGGGAG 57.604 47.619 0.00 0.00 0.00 4.30
775 1031 2.701951 TGTAAACTGAAACGGAGGGAGT 59.298 45.455 0.00 0.00 0.00 3.85
776 1032 3.896888 TGTAAACTGAAACGGAGGGAGTA 59.103 43.478 0.00 0.00 0.00 2.59
777 1033 3.397849 AAACTGAAACGGAGGGAGTAC 57.602 47.619 0.00 0.00 0.00 2.73
778 1034 2.305858 ACTGAAACGGAGGGAGTACT 57.694 50.000 0.00 0.00 0.00 2.73
779 1035 2.169330 ACTGAAACGGAGGGAGTACTC 58.831 52.381 14.87 14.87 36.76 2.59
861 1118 1.371022 CGCACTGATCGATCCGGAG 60.371 63.158 22.31 15.19 0.00 4.63
862 1119 1.663074 GCACTGATCGATCCGGAGC 60.663 63.158 22.31 18.82 0.00 4.70
934 1193 0.749649 CCTCTCACTCCGCAAGCTAT 59.250 55.000 0.00 0.00 0.00 2.97
959 1218 0.745845 CCCTGAACCTGAAGCATCGG 60.746 60.000 0.00 0.00 0.00 4.18
979 1248 3.367025 CGGTCGAGTTAGTTTTGGTGATC 59.633 47.826 0.00 0.00 0.00 2.92
1216 1485 1.299926 GTGCTCGGTGAGTCGTTGT 60.300 57.895 0.00 0.00 31.39 3.32
1245 1514 1.552337 TGTTCTCTTCCAGCTAGGCAG 59.448 52.381 0.00 0.00 37.29 4.85
1270 1576 0.544223 ATGCCATGGGTTGCGTACTA 59.456 50.000 15.13 0.00 0.00 1.82
1271 1577 0.107897 TGCCATGGGTTGCGTACTAG 60.108 55.000 15.13 0.00 0.00 2.57
1272 1578 0.107848 GCCATGGGTTGCGTACTAGT 60.108 55.000 15.13 0.00 0.00 2.57
1273 1579 1.137479 GCCATGGGTTGCGTACTAGTA 59.863 52.381 15.13 0.00 0.00 1.82
1274 1580 2.802057 GCCATGGGTTGCGTACTAGTAG 60.802 54.545 15.13 0.00 0.00 2.57
1275 1581 2.429610 CCATGGGTTGCGTACTAGTAGT 59.570 50.000 2.85 8.14 0.00 2.73
1276 1582 3.633525 CCATGGGTTGCGTACTAGTAGTA 59.366 47.826 2.85 5.90 0.00 1.82
1298 1604 4.687901 ACATGTGTCGATGGAATGGATA 57.312 40.909 0.00 0.00 32.34 2.59
1336 1642 2.643272 GAGCTCCACGACGTGACA 59.357 61.111 28.83 13.76 35.23 3.58
1495 1801 0.792640 ACAAGAACATGAAGCTCGCG 59.207 50.000 0.00 0.00 0.00 5.87
1545 1880 2.159421 GCCGCATCATCATCATCAATCC 60.159 50.000 0.00 0.00 0.00 3.01
1582 1917 1.747745 GGCCTGGCCGTCGTTTAAT 60.748 57.895 24.16 0.00 39.62 1.40
1657 1994 3.359695 TTGGGGGTCACTTGTATTAGC 57.640 47.619 0.00 0.00 0.00 3.09
1786 2178 8.809468 TCTCAATATATAACTACGCCATCTCT 57.191 34.615 0.00 0.00 0.00 3.10
1794 2186 2.877168 ACTACGCCATCTCTACTTACGG 59.123 50.000 0.00 0.00 0.00 4.02
1841 2233 3.818210 ACTTCAACGTGCAACCATTCATA 59.182 39.130 0.00 0.00 0.00 2.15
2022 2419 3.058085 TCAACGCGCGGTATATCATCTAA 60.058 43.478 35.22 0.13 0.00 2.10
2026 2423 5.271625 ACGCGCGGTATATCATCTAATTAG 58.728 41.667 35.22 6.11 0.00 1.73
2040 2437 8.948631 TCATCTAATTAGTGTGAAAGCTAAGG 57.051 34.615 12.19 0.00 31.70 2.69
2041 2438 7.495934 TCATCTAATTAGTGTGAAAGCTAAGGC 59.504 37.037 12.19 0.00 39.06 4.35
2057 2454 2.200373 AGGCGCTTGGTTGATTAACT 57.800 45.000 7.64 0.00 36.99 2.24
2094 2491 5.046288 TGGTATGGTTGATGTCATGCATA 57.954 39.130 0.00 0.00 38.06 3.14
2096 2493 6.069994 TGGTATGGTTGATGTCATGCATAAT 58.930 36.000 0.00 0.00 38.06 1.28
2097 2494 6.016108 TGGTATGGTTGATGTCATGCATAATG 60.016 38.462 0.00 0.00 38.06 1.90
2098 2495 4.310357 TGGTTGATGTCATGCATAATGC 57.690 40.909 0.00 0.00 45.29 3.56
2112 2509 4.737054 GCATAATGCATTGCCATACCTAC 58.263 43.478 22.27 0.00 44.26 3.18
2126 2523 4.097437 CCATACCTACTTGCTCGTTGACTA 59.903 45.833 0.00 0.00 0.00 2.59
2127 2524 3.851976 ACCTACTTGCTCGTTGACTAG 57.148 47.619 0.00 0.00 0.00 2.57
2128 2525 3.418995 ACCTACTTGCTCGTTGACTAGA 58.581 45.455 0.00 0.00 0.00 2.43
2129 2526 3.440872 ACCTACTTGCTCGTTGACTAGAG 59.559 47.826 0.00 0.00 37.54 2.43
2135 2532 2.284263 CTCGTTGACTAGAGCATGCA 57.716 50.000 21.98 0.00 0.00 3.96
2136 2533 2.819115 CTCGTTGACTAGAGCATGCAT 58.181 47.619 21.98 10.70 0.00 3.96
2137 2534 3.969899 CTCGTTGACTAGAGCATGCATA 58.030 45.455 21.98 11.33 0.00 3.14
2138 2535 4.363138 CTCGTTGACTAGAGCATGCATAA 58.637 43.478 21.98 2.90 0.00 1.90
2139 2536 4.948847 TCGTTGACTAGAGCATGCATAAT 58.051 39.130 21.98 1.54 0.00 1.28
2140 2537 4.746611 TCGTTGACTAGAGCATGCATAATG 59.253 41.667 21.98 8.24 39.49 1.90
2141 2538 4.746611 CGTTGACTAGAGCATGCATAATGA 59.253 41.667 21.98 0.00 38.72 2.57
2142 2539 5.332883 CGTTGACTAGAGCATGCATAATGAC 60.333 44.000 21.98 7.63 38.72 3.06
2143 2540 5.280654 TGACTAGAGCATGCATAATGACA 57.719 39.130 21.98 8.71 38.72 3.58
2144 2541 5.861727 TGACTAGAGCATGCATAATGACAT 58.138 37.500 21.98 0.00 38.72 3.06
2145 2542 6.996509 TGACTAGAGCATGCATAATGACATA 58.003 36.000 21.98 0.00 38.72 2.29
2146 2543 6.870439 TGACTAGAGCATGCATAATGACATAC 59.130 38.462 21.98 0.64 38.72 2.39
2147 2544 7.002250 ACTAGAGCATGCATAATGACATACT 57.998 36.000 21.98 0.00 38.72 2.12
2148 2545 7.448420 ACTAGAGCATGCATAATGACATACTT 58.552 34.615 21.98 0.00 38.72 2.24
2149 2546 8.588472 ACTAGAGCATGCATAATGACATACTTA 58.412 33.333 21.98 0.00 38.72 2.24
2150 2547 7.902387 AGAGCATGCATAATGACATACTTAG 57.098 36.000 21.98 0.00 38.72 2.18
2151 2548 7.448420 AGAGCATGCATAATGACATACTTAGT 58.552 34.615 21.98 0.00 38.72 2.24
2152 2549 7.935755 AGAGCATGCATAATGACATACTTAGTT 59.064 33.333 21.98 0.00 38.72 2.24
2153 2550 7.868775 AGCATGCATAATGACATACTTAGTTG 58.131 34.615 21.98 0.00 38.72 3.16
2154 2551 6.580041 GCATGCATAATGACATACTTAGTTGC 59.420 38.462 14.21 0.00 38.72 4.17
2155 2552 7.521099 GCATGCATAATGACATACTTAGTTGCT 60.521 37.037 14.21 0.00 38.72 3.91
2156 2553 7.864108 TGCATAATGACATACTTAGTTGCTT 57.136 32.000 0.00 0.00 0.00 3.91
2157 2554 7.696755 TGCATAATGACATACTTAGTTGCTTG 58.303 34.615 0.00 0.00 0.00 4.01
2158 2555 7.336679 TGCATAATGACATACTTAGTTGCTTGT 59.663 33.333 0.00 0.00 0.00 3.16
2159 2556 8.184192 GCATAATGACATACTTAGTTGCTTGTT 58.816 33.333 0.00 0.00 0.00 2.83
2160 2557 9.494479 CATAATGACATACTTAGTTGCTTGTTG 57.506 33.333 0.00 0.00 0.00 3.33
2161 2558 7.744087 AATGACATACTTAGTTGCTTGTTGA 57.256 32.000 0.00 0.00 0.00 3.18
2162 2559 6.539649 TGACATACTTAGTTGCTTGTTGAC 57.460 37.500 0.00 0.00 0.00 3.18
2163 2560 6.288294 TGACATACTTAGTTGCTTGTTGACT 58.712 36.000 0.00 0.00 0.00 3.41
2164 2561 6.765989 TGACATACTTAGTTGCTTGTTGACTT 59.234 34.615 0.00 0.00 0.00 3.01
2165 2562 7.929245 TGACATACTTAGTTGCTTGTTGACTTA 59.071 33.333 0.00 0.00 0.00 2.24
2166 2563 8.311650 ACATACTTAGTTGCTTGTTGACTTAG 57.688 34.615 0.00 0.00 0.00 2.18
2167 2564 5.674933 ACTTAGTTGCTTGTTGACTTAGC 57.325 39.130 0.00 0.00 35.50 3.09
2168 2565 4.515567 ACTTAGTTGCTTGTTGACTTAGCC 59.484 41.667 0.00 0.00 34.03 3.93
2169 2566 2.230660 AGTTGCTTGTTGACTTAGCCC 58.769 47.619 0.00 0.00 34.03 5.19
2170 2567 2.158608 AGTTGCTTGTTGACTTAGCCCT 60.159 45.455 0.00 0.00 34.03 5.19
2171 2568 3.072476 AGTTGCTTGTTGACTTAGCCCTA 59.928 43.478 0.00 0.00 34.03 3.53
2172 2569 3.334583 TGCTTGTTGACTTAGCCCTAG 57.665 47.619 0.00 0.00 34.03 3.02
2173 2570 2.010497 GCTTGTTGACTTAGCCCTAGC 58.990 52.381 0.00 0.00 40.32 3.42
2174 2571 2.633488 CTTGTTGACTTAGCCCTAGCC 58.367 52.381 0.00 0.00 41.25 3.93
2175 2572 0.909623 TGTTGACTTAGCCCTAGCCC 59.090 55.000 0.00 0.00 41.25 5.19
2176 2573 0.909623 GTTGACTTAGCCCTAGCCCA 59.090 55.000 0.00 0.00 41.25 5.36
2177 2574 1.490910 GTTGACTTAGCCCTAGCCCAT 59.509 52.381 0.00 0.00 41.25 4.00
2178 2575 1.424638 TGACTTAGCCCTAGCCCATC 58.575 55.000 0.00 0.00 41.25 3.51
2179 2576 1.343985 TGACTTAGCCCTAGCCCATCA 60.344 52.381 0.00 0.00 41.25 3.07
2180 2577 1.768870 GACTTAGCCCTAGCCCATCAA 59.231 52.381 0.00 0.00 41.25 2.57
2181 2578 1.490910 ACTTAGCCCTAGCCCATCAAC 59.509 52.381 0.00 0.00 41.25 3.18
2182 2579 0.843984 TTAGCCCTAGCCCATCAACC 59.156 55.000 0.00 0.00 41.25 3.77
2183 2580 1.407656 TAGCCCTAGCCCATCAACCG 61.408 60.000 0.00 0.00 41.25 4.44
2184 2581 2.510906 CCCTAGCCCATCAACCGG 59.489 66.667 0.00 0.00 0.00 5.28
2194 2591 3.676291 CCATCAACCGGGACAATTTTT 57.324 42.857 6.32 0.00 0.00 1.94
2212 2609 2.861462 TTTTCCCAAAGTCGCAACAG 57.139 45.000 0.00 0.00 0.00 3.16
2486 2883 2.467566 AACCCTCACATGAACGGTAC 57.532 50.000 0.00 0.00 0.00 3.34
2487 2884 1.640917 ACCCTCACATGAACGGTACT 58.359 50.000 0.00 0.00 0.00 2.73
2488 2885 1.975680 ACCCTCACATGAACGGTACTT 59.024 47.619 0.00 0.00 0.00 2.24
2489 2886 2.028385 ACCCTCACATGAACGGTACTTC 60.028 50.000 0.00 0.00 0.00 3.01
2490 2887 2.028476 CCCTCACATGAACGGTACTTCA 60.028 50.000 0.00 0.52 34.65 3.02
2491 2888 3.369471 CCCTCACATGAACGGTACTTCAT 60.369 47.826 0.00 4.87 40.81 2.57
2499 2896 5.918426 TGAACGGTACTTCATGGTATACA 57.082 39.130 5.01 0.00 0.00 2.29
2500 2897 5.898174 TGAACGGTACTTCATGGTATACAG 58.102 41.667 5.01 0.00 0.00 2.74
2501 2898 5.653330 TGAACGGTACTTCATGGTATACAGA 59.347 40.000 5.01 0.00 0.00 3.41
2502 2899 5.769484 ACGGTACTTCATGGTATACAGAG 57.231 43.478 5.01 0.00 0.00 3.35
2503 2900 5.443283 ACGGTACTTCATGGTATACAGAGA 58.557 41.667 5.01 0.00 0.00 3.10
2504 2901 5.531659 ACGGTACTTCATGGTATACAGAGAG 59.468 44.000 5.01 0.00 0.00 3.20
2505 2902 5.563085 CGGTACTTCATGGTATACAGAGAGC 60.563 48.000 5.01 0.00 0.00 4.09
2506 2903 5.302059 GGTACTTCATGGTATACAGAGAGCA 59.698 44.000 5.01 0.00 0.00 4.26
2507 2904 5.269505 ACTTCATGGTATACAGAGAGCAC 57.730 43.478 5.01 0.00 0.00 4.40
2508 2905 4.959210 ACTTCATGGTATACAGAGAGCACT 59.041 41.667 5.01 0.00 0.00 4.40
2509 2906 4.926140 TCATGGTATACAGAGAGCACTG 57.074 45.455 5.01 0.00 42.78 3.66
2510 2907 4.536765 TCATGGTATACAGAGAGCACTGA 58.463 43.478 5.01 0.00 40.63 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.082579 GCGGCTACAGGGAGGAGTG 62.083 68.421 0.00 0.00 0.00 3.51
137 138 1.597663 GGGTTTCACGACACTTGTGAG 59.402 52.381 7.83 3.97 46.17 3.51
171 172 1.236628 GCTGCTCCTGCTCCATTATG 58.763 55.000 0.00 0.00 40.48 1.90
195 196 0.951040 GCTGCTCTGGTACACGCTTT 60.951 55.000 0.00 0.00 31.90 3.51
198 199 2.815647 GGCTGCTCTGGTACACGC 60.816 66.667 0.00 0.00 0.00 5.34
238 488 8.514136 TTGAAGTAAAAGAATGTAAAATGCCG 57.486 30.769 0.00 0.00 0.00 5.69
264 517 4.353777 TCATCTTGCTAGTACCCTGAACT 58.646 43.478 0.00 0.00 0.00 3.01
279 532 3.305608 GGGCCAAAGACAACTTCATCTTG 60.306 47.826 4.39 0.00 35.34 3.02
280 533 2.893489 GGGCCAAAGACAACTTCATCTT 59.107 45.455 4.39 0.00 36.73 2.40
282 535 1.200020 CGGGCCAAAGACAACTTCATC 59.800 52.381 4.39 0.00 35.05 2.92
283 536 1.247567 CGGGCCAAAGACAACTTCAT 58.752 50.000 4.39 0.00 35.05 2.57
285 538 1.524008 CCCGGGCCAAAGACAACTTC 61.524 60.000 8.08 0.00 35.05 3.01
286 539 1.530655 CCCGGGCCAAAGACAACTT 60.531 57.895 8.08 0.00 38.05 2.66
287 540 2.115266 CCCGGGCCAAAGACAACT 59.885 61.111 8.08 0.00 0.00 3.16
288 541 2.987355 TTCCCCGGGCCAAAGACAAC 62.987 60.000 17.73 0.00 0.00 3.32
289 542 2.299727 TTTCCCCGGGCCAAAGACAA 62.300 55.000 17.73 1.41 0.00 3.18
292 545 0.705253 TTATTTCCCCGGGCCAAAGA 59.295 50.000 17.73 10.78 0.00 2.52
295 548 0.410270 AGTTTATTTCCCCGGGCCAA 59.590 50.000 17.73 10.38 0.00 4.52
297 550 1.672854 GCAGTTTATTTCCCCGGGCC 61.673 60.000 17.73 0.00 0.00 5.80
298 551 1.672854 GGCAGTTTATTTCCCCGGGC 61.673 60.000 17.73 0.00 0.00 6.13
299 552 0.323908 TGGCAGTTTATTTCCCCGGG 60.324 55.000 15.80 15.80 0.00 5.73
300 553 0.815095 GTGGCAGTTTATTTCCCCGG 59.185 55.000 0.00 0.00 0.00 5.73
301 554 0.815095 GGTGGCAGTTTATTTCCCCG 59.185 55.000 0.00 0.00 0.00 5.73
302 555 2.231716 AGGTGGCAGTTTATTTCCCC 57.768 50.000 0.00 0.00 0.00 4.81
303 556 3.323691 ACAAAGGTGGCAGTTTATTTCCC 59.676 43.478 0.00 0.00 0.00 3.97
312 565 1.756538 CCTTGAAACAAAGGTGGCAGT 59.243 47.619 0.00 0.00 41.65 4.40
316 569 1.269051 GCGTCCTTGAAACAAAGGTGG 60.269 52.381 3.06 0.00 45.94 4.61
324 577 1.869132 ACCTAAACGCGTCCTTGAAAC 59.131 47.619 14.44 0.00 0.00 2.78
343 596 2.545946 GTGGAGTTCAAAGTCAGAGCAC 59.454 50.000 0.38 0.00 0.00 4.40
347 600 1.138069 TGCGTGGAGTTCAAAGTCAGA 59.862 47.619 0.38 0.00 0.00 3.27
391 647 0.750850 TACTCTCATTACGGGCAGCC 59.249 55.000 1.26 1.26 0.00 4.85
392 648 2.035961 TGATACTCTCATTACGGGCAGC 59.964 50.000 0.00 0.00 0.00 5.25
393 649 4.240888 CATGATACTCTCATTACGGGCAG 58.759 47.826 0.00 0.00 42.07 4.85
394 650 3.554960 GCATGATACTCTCATTACGGGCA 60.555 47.826 0.00 0.00 42.07 5.36
395 651 2.996621 GCATGATACTCTCATTACGGGC 59.003 50.000 0.00 0.00 42.07 6.13
396 652 4.257267 TGCATGATACTCTCATTACGGG 57.743 45.455 0.00 0.00 42.07 5.28
397 653 4.092529 GCATGCATGATACTCTCATTACGG 59.907 45.833 30.64 0.00 42.07 4.02
398 654 4.092529 GGCATGCATGATACTCTCATTACG 59.907 45.833 30.64 0.00 42.07 3.18
399 655 4.999311 TGGCATGCATGATACTCTCATTAC 59.001 41.667 30.64 7.19 42.07 1.89
400 656 5.231702 TGGCATGCATGATACTCTCATTA 57.768 39.130 30.64 0.00 42.07 1.90
401 657 4.094830 TGGCATGCATGATACTCTCATT 57.905 40.909 30.64 0.00 42.07 2.57
402 658 3.782656 TGGCATGCATGATACTCTCAT 57.217 42.857 30.64 0.00 45.78 2.90
403 659 3.118149 AGTTGGCATGCATGATACTCTCA 60.118 43.478 30.64 11.99 38.53 3.27
404 660 3.474600 AGTTGGCATGCATGATACTCTC 58.525 45.455 30.64 10.15 0.00 3.20
405 661 3.572632 AGTTGGCATGCATGATACTCT 57.427 42.857 30.64 16.41 0.00 3.24
406 662 5.066375 TGTTTAGTTGGCATGCATGATACTC 59.934 40.000 30.64 11.65 0.00 2.59
407 663 4.949238 TGTTTAGTTGGCATGCATGATACT 59.051 37.500 30.64 26.11 0.00 2.12
408 664 5.247507 TGTTTAGTTGGCATGCATGATAC 57.752 39.130 30.64 21.28 0.00 2.24
409 665 5.911378 TTGTTTAGTTGGCATGCATGATA 57.089 34.783 30.64 14.66 0.00 2.15
410 666 4.804868 TTGTTTAGTTGGCATGCATGAT 57.195 36.364 30.64 11.73 0.00 2.45
411 667 4.804868 ATTGTTTAGTTGGCATGCATGA 57.195 36.364 30.64 7.50 0.00 3.07
412 668 5.866335 AAATTGTTTAGTTGGCATGCATG 57.134 34.783 22.70 22.70 0.00 4.06
413 669 5.996513 TCAAAATTGTTTAGTTGGCATGCAT 59.003 32.000 21.36 4.57 0.00 3.96
414 670 5.363101 TCAAAATTGTTTAGTTGGCATGCA 58.637 33.333 21.36 2.54 0.00 3.96
415 671 5.921004 TCAAAATTGTTTAGTTGGCATGC 57.079 34.783 9.90 9.90 0.00 4.06
416 672 7.148540 CCTCATCAAAATTGTTTAGTTGGCATG 60.149 37.037 0.00 0.00 0.00 4.06
417 673 6.875195 CCTCATCAAAATTGTTTAGTTGGCAT 59.125 34.615 0.00 0.00 0.00 4.40
418 674 6.183360 ACCTCATCAAAATTGTTTAGTTGGCA 60.183 34.615 0.00 0.00 0.00 4.92
419 675 6.146021 CACCTCATCAAAATTGTTTAGTTGGC 59.854 38.462 0.00 0.00 0.00 4.52
420 676 6.646240 CCACCTCATCAAAATTGTTTAGTTGG 59.354 38.462 0.00 0.00 0.00 3.77
421 677 6.146021 GCCACCTCATCAAAATTGTTTAGTTG 59.854 38.462 0.00 0.00 0.00 3.16
422 678 6.183360 TGCCACCTCATCAAAATTGTTTAGTT 60.183 34.615 0.00 0.00 0.00 2.24
423 679 5.304101 TGCCACCTCATCAAAATTGTTTAGT 59.696 36.000 0.00 0.00 0.00 2.24
424 680 5.782047 TGCCACCTCATCAAAATTGTTTAG 58.218 37.500 0.00 0.00 0.00 1.85
425 681 5.798125 TGCCACCTCATCAAAATTGTTTA 57.202 34.783 0.00 0.00 0.00 2.01
426 682 4.686191 TGCCACCTCATCAAAATTGTTT 57.314 36.364 0.00 0.00 0.00 2.83
427 683 4.283978 TCATGCCACCTCATCAAAATTGTT 59.716 37.500 0.00 0.00 0.00 2.83
428 684 3.833650 TCATGCCACCTCATCAAAATTGT 59.166 39.130 0.00 0.00 0.00 2.71
429 685 4.459390 TCATGCCACCTCATCAAAATTG 57.541 40.909 0.00 0.00 0.00 2.32
430 686 5.486735 TTTCATGCCACCTCATCAAAATT 57.513 34.783 0.00 0.00 0.00 1.82
431 687 5.687166 ATTTCATGCCACCTCATCAAAAT 57.313 34.783 0.00 0.00 0.00 1.82
432 688 5.486735 AATTTCATGCCACCTCATCAAAA 57.513 34.783 0.00 0.00 0.00 2.44
433 689 6.602410 TTAATTTCATGCCACCTCATCAAA 57.398 33.333 0.00 0.00 0.00 2.69
434 690 6.602410 TTTAATTTCATGCCACCTCATCAA 57.398 33.333 0.00 0.00 0.00 2.57
435 691 6.380560 TCATTTAATTTCATGCCACCTCATCA 59.619 34.615 0.00 0.00 0.00 3.07
436 692 6.808829 TCATTTAATTTCATGCCACCTCATC 58.191 36.000 0.00 0.00 0.00 2.92
437 693 6.795144 TCATTTAATTTCATGCCACCTCAT 57.205 33.333 0.00 0.00 0.00 2.90
438 694 6.436847 TCTTCATTTAATTTCATGCCACCTCA 59.563 34.615 0.00 0.00 0.00 3.86
439 695 6.866480 TCTTCATTTAATTTCATGCCACCTC 58.134 36.000 0.00 0.00 0.00 3.85
440 696 6.855763 TCTTCATTTAATTTCATGCCACCT 57.144 33.333 0.00 0.00 0.00 4.00
441 697 7.903995 TTTCTTCATTTAATTTCATGCCACC 57.096 32.000 0.00 0.00 0.00 4.61
442 698 9.815936 CTTTTTCTTCATTTAATTTCATGCCAC 57.184 29.630 0.00 0.00 0.00 5.01
443 699 9.775854 TCTTTTTCTTCATTTAATTTCATGCCA 57.224 25.926 0.00 0.00 0.00 4.92
494 750 8.759641 GCATGACACAAAATAACACAACATTTA 58.240 29.630 0.00 0.00 0.00 1.40
495 751 7.279536 TGCATGACACAAAATAACACAACATTT 59.720 29.630 0.00 0.00 0.00 2.32
496 752 6.760298 TGCATGACACAAAATAACACAACATT 59.240 30.769 0.00 0.00 0.00 2.71
497 753 6.279123 TGCATGACACAAAATAACACAACAT 58.721 32.000 0.00 0.00 0.00 2.71
498 754 5.654497 TGCATGACACAAAATAACACAACA 58.346 33.333 0.00 0.00 0.00 3.33
499 755 6.420306 TCATGCATGACACAAAATAACACAAC 59.580 34.615 25.42 0.00 0.00 3.32
500 756 6.510536 TCATGCATGACACAAAATAACACAA 58.489 32.000 25.42 0.00 0.00 3.33
501 757 6.081872 TCATGCATGACACAAAATAACACA 57.918 33.333 25.42 0.00 0.00 3.72
515 771 8.393671 TGCACTATATTTATTGTCATGCATGA 57.606 30.769 25.42 25.42 0.00 3.07
516 772 9.634163 AATGCACTATATTTATTGTCATGCATG 57.366 29.630 21.07 21.07 32.99 4.06
541 797 9.560860 AGGGAGTATCATATGTTGGTATCATAA 57.439 33.333 1.90 0.00 36.25 1.90
542 798 9.201989 GAGGGAGTATCATATGTTGGTATCATA 57.798 37.037 1.90 0.00 36.25 2.15
543 799 7.903481 AGAGGGAGTATCATATGTTGGTATCAT 59.097 37.037 1.90 0.00 36.25 2.45
544 800 7.248976 AGAGGGAGTATCATATGTTGGTATCA 58.751 38.462 1.90 0.00 36.25 2.15
545 801 7.617723 AGAGAGGGAGTATCATATGTTGGTATC 59.382 40.741 1.90 0.00 36.25 2.24
546 802 7.483018 AGAGAGGGAGTATCATATGTTGGTAT 58.517 38.462 1.90 0.00 36.25 2.73
547 803 6.864421 AGAGAGGGAGTATCATATGTTGGTA 58.136 40.000 1.90 0.00 36.25 3.25
548 804 5.721225 AGAGAGGGAGTATCATATGTTGGT 58.279 41.667 1.90 0.00 36.25 3.67
549 805 5.777223 TGAGAGAGGGAGTATCATATGTTGG 59.223 44.000 1.90 0.00 36.25 3.77
550 806 6.907853 TGAGAGAGGGAGTATCATATGTTG 57.092 41.667 1.90 0.00 36.25 3.33
551 807 8.503428 AATTGAGAGAGGGAGTATCATATGTT 57.497 34.615 1.90 0.00 36.25 2.71
552 808 8.503428 AAATTGAGAGAGGGAGTATCATATGT 57.497 34.615 1.90 0.00 36.25 2.29
553 809 9.868277 GTAAATTGAGAGAGGGAGTATCATATG 57.132 37.037 0.00 0.00 36.25 1.78
554 810 9.607333 TGTAAATTGAGAGAGGGAGTATCATAT 57.393 33.333 0.00 0.00 36.25 1.78
555 811 9.434275 TTGTAAATTGAGAGAGGGAGTATCATA 57.566 33.333 0.00 0.00 36.25 2.15
556 812 7.921041 TGTAAATTGAGAGAGGGAGTATCAT 57.079 36.000 0.00 0.00 36.25 2.45
557 813 7.147655 CCTTGTAAATTGAGAGAGGGAGTATCA 60.148 40.741 0.00 0.00 36.25 2.15
558 814 7.213678 CCTTGTAAATTGAGAGAGGGAGTATC 58.786 42.308 0.00 0.00 0.00 2.24
559 815 6.408662 GCCTTGTAAATTGAGAGAGGGAGTAT 60.409 42.308 0.00 0.00 0.00 2.12
560 816 5.104900 GCCTTGTAAATTGAGAGAGGGAGTA 60.105 44.000 0.00 0.00 0.00 2.59
561 817 4.323868 GCCTTGTAAATTGAGAGAGGGAGT 60.324 45.833 0.00 0.00 0.00 3.85
562 818 4.195416 GCCTTGTAAATTGAGAGAGGGAG 58.805 47.826 0.00 0.00 0.00 4.30
563 819 3.369471 CGCCTTGTAAATTGAGAGAGGGA 60.369 47.826 0.00 0.00 0.00 4.20
564 820 2.939103 CGCCTTGTAAATTGAGAGAGGG 59.061 50.000 0.00 0.00 0.00 4.30
565 821 3.372206 CACGCCTTGTAAATTGAGAGAGG 59.628 47.826 0.00 0.00 0.00 3.69
566 822 3.181516 GCACGCCTTGTAAATTGAGAGAG 60.182 47.826 0.00 0.00 0.00 3.20
567 823 2.742053 GCACGCCTTGTAAATTGAGAGA 59.258 45.455 0.00 0.00 0.00 3.10
568 824 2.474526 CGCACGCCTTGTAAATTGAGAG 60.475 50.000 0.00 0.00 0.00 3.20
569 825 1.463056 CGCACGCCTTGTAAATTGAGA 59.537 47.619 0.00 0.00 0.00 3.27
570 826 1.882198 CGCACGCCTTGTAAATTGAG 58.118 50.000 0.00 0.00 0.00 3.02
571 827 0.109964 GCGCACGCCTTGTAAATTGA 60.110 50.000 0.30 0.00 34.56 2.57
572 828 0.386605 TGCGCACGCCTTGTAAATTG 60.387 50.000 5.66 0.00 41.09 2.32
573 829 0.525761 ATGCGCACGCCTTGTAAATT 59.474 45.000 14.90 0.00 41.09 1.82
574 830 1.063469 GTATGCGCACGCCTTGTAAAT 59.937 47.619 14.90 0.00 41.09 1.40
575 831 0.444651 GTATGCGCACGCCTTGTAAA 59.555 50.000 14.90 0.00 41.09 2.01
576 832 1.363145 GGTATGCGCACGCCTTGTAA 61.363 55.000 14.90 0.00 41.09 2.41
577 833 1.812093 GGTATGCGCACGCCTTGTA 60.812 57.895 14.90 0.00 41.09 2.41
578 834 3.124921 GGTATGCGCACGCCTTGT 61.125 61.111 14.90 0.00 41.09 3.16
579 835 3.876198 GGGTATGCGCACGCCTTG 61.876 66.667 25.13 0.00 41.09 3.61
583 839 2.661866 CTAGGGGTATGCGCACGC 60.662 66.667 14.90 9.74 42.35 5.34
584 840 2.029073 CCTAGGGGTATGCGCACG 59.971 66.667 14.90 0.00 0.00 5.34
585 841 1.069258 GTCCTAGGGGTATGCGCAC 59.931 63.158 14.90 0.00 0.00 5.34
586 842 0.762842 ATGTCCTAGGGGTATGCGCA 60.763 55.000 14.96 14.96 0.00 6.09
587 843 0.037232 GATGTCCTAGGGGTATGCGC 60.037 60.000 9.46 0.00 0.00 6.09
588 844 1.338107 TGATGTCCTAGGGGTATGCG 58.662 55.000 9.46 0.00 0.00 4.73
589 845 4.373156 AATTGATGTCCTAGGGGTATGC 57.627 45.455 9.46 0.00 0.00 3.14
590 846 5.765182 GTCAAATTGATGTCCTAGGGGTATG 59.235 44.000 9.46 0.00 0.00 2.39
591 847 5.163088 GGTCAAATTGATGTCCTAGGGGTAT 60.163 44.000 9.46 0.76 0.00 2.73
592 848 4.165372 GGTCAAATTGATGTCCTAGGGGTA 59.835 45.833 9.46 0.00 0.00 3.69
593 849 3.053619 GGTCAAATTGATGTCCTAGGGGT 60.054 47.826 9.46 0.00 0.00 4.95
594 850 3.053693 TGGTCAAATTGATGTCCTAGGGG 60.054 47.826 9.46 0.00 30.93 4.79
595 851 4.235079 TGGTCAAATTGATGTCCTAGGG 57.765 45.455 9.46 0.00 30.93 3.53
596 852 4.399303 GGTTGGTCAAATTGATGTCCTAGG 59.601 45.833 0.82 0.82 30.93 3.02
597 853 5.256474 AGGTTGGTCAAATTGATGTCCTAG 58.744 41.667 0.00 0.00 30.93 3.02
598 854 5.255397 AGGTTGGTCAAATTGATGTCCTA 57.745 39.130 0.00 0.00 30.93 2.94
599 855 4.118168 AGGTTGGTCAAATTGATGTCCT 57.882 40.909 0.00 2.96 30.93 3.85
600 856 5.975693 TTAGGTTGGTCAAATTGATGTCC 57.024 39.130 0.00 0.00 0.00 4.02
601 857 8.506168 TCTATTAGGTTGGTCAAATTGATGTC 57.494 34.615 0.00 0.00 0.00 3.06
602 858 8.877864 TTCTATTAGGTTGGTCAAATTGATGT 57.122 30.769 0.00 0.00 0.00 3.06
603 859 8.960591 ACTTCTATTAGGTTGGTCAAATTGATG 58.039 33.333 0.00 0.00 0.00 3.07
604 860 9.178758 GACTTCTATTAGGTTGGTCAAATTGAT 57.821 33.333 0.00 0.00 0.00 2.57
605 861 8.160765 TGACTTCTATTAGGTTGGTCAAATTGA 58.839 33.333 0.00 0.00 30.81 2.57
606 862 8.335532 TGACTTCTATTAGGTTGGTCAAATTG 57.664 34.615 0.00 0.00 30.81 2.32
658 914 9.030301 CCGTTTGAAAATAAAACATCTGAAGTT 57.970 29.630 0.00 0.00 37.37 2.66
659 915 8.194769 ACCGTTTGAAAATAAAACATCTGAAGT 58.805 29.630 0.00 0.00 37.37 3.01
660 916 8.574196 ACCGTTTGAAAATAAAACATCTGAAG 57.426 30.769 0.00 0.00 37.37 3.02
704 960 8.706035 GGCAATTGTATCGTCGTAATATAAACT 58.294 33.333 7.40 0.00 0.00 2.66
705 961 8.489559 TGGCAATTGTATCGTCGTAATATAAAC 58.510 33.333 7.40 0.00 0.00 2.01
706 962 8.590719 TGGCAATTGTATCGTCGTAATATAAA 57.409 30.769 7.40 0.00 0.00 1.40
707 963 8.489559 GTTGGCAATTGTATCGTCGTAATATAA 58.510 33.333 1.92 0.00 0.00 0.98
708 964 7.116662 GGTTGGCAATTGTATCGTCGTAATATA 59.883 37.037 1.92 0.00 0.00 0.86
709 965 6.073440 GGTTGGCAATTGTATCGTCGTAATAT 60.073 38.462 1.92 0.00 0.00 1.28
710 966 5.234757 GGTTGGCAATTGTATCGTCGTAATA 59.765 40.000 1.92 0.00 0.00 0.98
711 967 4.034742 GGTTGGCAATTGTATCGTCGTAAT 59.965 41.667 1.92 0.00 0.00 1.89
712 968 3.371591 GGTTGGCAATTGTATCGTCGTAA 59.628 43.478 1.92 0.00 0.00 3.18
713 969 2.931325 GGTTGGCAATTGTATCGTCGTA 59.069 45.455 1.92 0.00 0.00 3.43
714 970 1.735571 GGTTGGCAATTGTATCGTCGT 59.264 47.619 1.92 0.00 0.00 4.34
715 971 2.006888 AGGTTGGCAATTGTATCGTCG 58.993 47.619 1.92 0.00 0.00 5.12
716 972 3.560068 CCTAGGTTGGCAATTGTATCGTC 59.440 47.826 1.92 0.00 0.00 4.20
717 973 3.054655 ACCTAGGTTGGCAATTGTATCGT 60.055 43.478 9.21 0.00 0.00 3.73
718 974 3.541632 ACCTAGGTTGGCAATTGTATCG 58.458 45.455 9.21 0.00 0.00 2.92
719 975 7.148239 GCATATACCTAGGTTGGCAATTGTATC 60.148 40.741 22.11 0.00 0.00 2.24
720 976 6.659242 GCATATACCTAGGTTGGCAATTGTAT 59.341 38.462 22.11 5.71 0.00 2.29
721 977 6.001460 GCATATACCTAGGTTGGCAATTGTA 58.999 40.000 22.11 0.00 0.00 2.41
722 978 4.827284 GCATATACCTAGGTTGGCAATTGT 59.173 41.667 22.11 0.00 0.00 2.71
723 979 4.083324 CGCATATACCTAGGTTGGCAATTG 60.083 45.833 22.11 9.59 0.00 2.32
724 980 4.072131 CGCATATACCTAGGTTGGCAATT 58.928 43.478 22.11 0.00 0.00 2.32
725 981 3.674997 CGCATATACCTAGGTTGGCAAT 58.325 45.455 22.11 9.64 0.00 3.56
726 982 2.808933 GCGCATATACCTAGGTTGGCAA 60.809 50.000 22.11 0.75 0.00 4.52
727 983 1.270625 GCGCATATACCTAGGTTGGCA 60.271 52.381 22.11 1.21 0.00 4.92
728 984 1.270625 TGCGCATATACCTAGGTTGGC 60.271 52.381 22.11 16.84 0.00 4.52
729 985 2.612972 CCTGCGCATATACCTAGGTTGG 60.613 54.545 22.11 8.50 0.00 3.77
730 986 2.299013 TCCTGCGCATATACCTAGGTTG 59.701 50.000 22.11 13.87 0.00 3.77
731 987 2.299297 GTCCTGCGCATATACCTAGGTT 59.701 50.000 22.11 10.62 0.00 3.50
732 988 1.893801 GTCCTGCGCATATACCTAGGT 59.106 52.381 20.57 20.57 0.00 3.08
733 989 2.171840 AGTCCTGCGCATATACCTAGG 58.828 52.381 12.24 7.41 0.00 3.02
734 990 3.005897 ACAAGTCCTGCGCATATACCTAG 59.994 47.826 12.24 5.11 0.00 3.02
735 991 2.963101 ACAAGTCCTGCGCATATACCTA 59.037 45.455 12.24 0.00 0.00 3.08
736 992 1.762957 ACAAGTCCTGCGCATATACCT 59.237 47.619 12.24 0.00 0.00 3.08
737 993 2.240493 ACAAGTCCTGCGCATATACC 57.760 50.000 12.24 0.00 0.00 2.73
738 994 4.809426 AGTTTACAAGTCCTGCGCATATAC 59.191 41.667 12.24 9.81 0.00 1.47
739 995 4.808895 CAGTTTACAAGTCCTGCGCATATA 59.191 41.667 12.24 0.00 0.00 0.86
740 996 3.623060 CAGTTTACAAGTCCTGCGCATAT 59.377 43.478 12.24 0.00 0.00 1.78
741 997 3.000041 CAGTTTACAAGTCCTGCGCATA 59.000 45.455 12.24 0.00 0.00 3.14
742 998 1.806542 CAGTTTACAAGTCCTGCGCAT 59.193 47.619 12.24 0.00 0.00 4.73
743 999 1.202592 TCAGTTTACAAGTCCTGCGCA 60.203 47.619 10.98 10.98 0.00 6.09
744 1000 1.508632 TCAGTTTACAAGTCCTGCGC 58.491 50.000 0.00 0.00 0.00 6.09
745 1001 3.603857 CGTTTCAGTTTACAAGTCCTGCG 60.604 47.826 0.00 0.00 0.00 5.18
746 1002 3.303791 CCGTTTCAGTTTACAAGTCCTGC 60.304 47.826 0.00 0.00 0.00 4.85
747 1003 4.124238 TCCGTTTCAGTTTACAAGTCCTG 58.876 43.478 0.00 0.00 0.00 3.86
748 1004 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
749 1005 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
750 1006 3.497262 CCCTCCGTTTCAGTTTACAAGTC 59.503 47.826 0.00 0.00 0.00 3.01
751 1007 3.135167 TCCCTCCGTTTCAGTTTACAAGT 59.865 43.478 0.00 0.00 0.00 3.16
752 1008 3.735591 TCCCTCCGTTTCAGTTTACAAG 58.264 45.455 0.00 0.00 0.00 3.16
753 1009 3.135167 ACTCCCTCCGTTTCAGTTTACAA 59.865 43.478 0.00 0.00 0.00 2.41
754 1010 2.701951 ACTCCCTCCGTTTCAGTTTACA 59.298 45.455 0.00 0.00 0.00 2.41
755 1011 3.397849 ACTCCCTCCGTTTCAGTTTAC 57.602 47.619 0.00 0.00 0.00 2.01
756 1012 4.154942 AGTACTCCCTCCGTTTCAGTTTA 58.845 43.478 0.00 0.00 0.00 2.01
757 1013 2.970640 AGTACTCCCTCCGTTTCAGTTT 59.029 45.455 0.00 0.00 0.00 2.66
758 1014 2.561858 GAGTACTCCCTCCGTTTCAGTT 59.438 50.000 12.13 0.00 0.00 3.16
759 1015 2.169330 GAGTACTCCCTCCGTTTCAGT 58.831 52.381 12.13 0.00 0.00 3.41
760 1016 1.477295 GGAGTACTCCCTCCGTTTCAG 59.523 57.143 28.87 0.00 43.94 3.02
761 1017 1.553706 GGAGTACTCCCTCCGTTTCA 58.446 55.000 28.87 0.00 43.94 2.69
772 1028 3.808174 GCGATTTGTAATGGGGAGTACTC 59.192 47.826 14.87 14.87 0.00 2.59
773 1029 3.199071 TGCGATTTGTAATGGGGAGTACT 59.801 43.478 0.00 0.00 0.00 2.73
774 1030 3.537580 TGCGATTTGTAATGGGGAGTAC 58.462 45.455 0.00 0.00 0.00 2.73
775 1031 3.916359 TGCGATTTGTAATGGGGAGTA 57.084 42.857 0.00 0.00 0.00 2.59
776 1032 2.799126 TGCGATTTGTAATGGGGAGT 57.201 45.000 0.00 0.00 0.00 3.85
777 1033 4.448537 TTTTGCGATTTGTAATGGGGAG 57.551 40.909 0.00 0.00 0.00 4.30
778 1034 4.524714 TCTTTTTGCGATTTGTAATGGGGA 59.475 37.500 0.00 0.00 0.00 4.81
779 1035 4.815269 TCTTTTTGCGATTTGTAATGGGG 58.185 39.130 0.00 0.00 0.00 4.96
780 1036 6.777526 TTTCTTTTTGCGATTTGTAATGGG 57.222 33.333 0.00 0.00 0.00 4.00
781 1037 8.071122 TCTTTTCTTTTTGCGATTTGTAATGG 57.929 30.769 0.00 0.00 0.00 3.16
782 1038 9.356929 GTTCTTTTCTTTTTGCGATTTGTAATG 57.643 29.630 0.00 0.00 0.00 1.90
783 1039 9.092876 TGTTCTTTTCTTTTTGCGATTTGTAAT 57.907 25.926 0.00 0.00 0.00 1.89
784 1040 8.467402 TGTTCTTTTCTTTTTGCGATTTGTAA 57.533 26.923 0.00 0.00 0.00 2.41
785 1041 8.641499 ATGTTCTTTTCTTTTTGCGATTTGTA 57.359 26.923 0.00 0.00 0.00 2.41
786 1042 6.959671 TGTTCTTTTCTTTTTGCGATTTGT 57.040 29.167 0.00 0.00 0.00 2.83
787 1043 6.782358 CGATGTTCTTTTCTTTTTGCGATTTG 59.218 34.615 0.00 0.00 0.00 2.32
788 1044 6.475402 ACGATGTTCTTTTCTTTTTGCGATTT 59.525 30.769 0.00 0.00 0.00 2.17
789 1045 5.977129 ACGATGTTCTTTTCTTTTTGCGATT 59.023 32.000 0.00 0.00 0.00 3.34
790 1046 5.519722 ACGATGTTCTTTTCTTTTTGCGAT 58.480 33.333 0.00 0.00 0.00 4.58
861 1118 0.533308 TTGGACCTTGGTGTGTACGC 60.533 55.000 0.00 0.00 0.00 4.42
862 1119 1.508632 CTTGGACCTTGGTGTGTACG 58.491 55.000 0.00 0.00 0.00 3.67
896 1155 2.354539 CCCGCCGTGCAGTTTTTG 60.355 61.111 0.00 0.00 0.00 2.44
934 1193 0.397941 CTTCAGGTTCAGGGCTGTGA 59.602 55.000 0.00 0.00 0.00 3.58
959 1218 4.143094 GCAGATCACCAAAACTAACTCGAC 60.143 45.833 0.00 0.00 0.00 4.20
993 1262 4.657408 TGAGCCACCATTGCCGCA 62.657 61.111 0.00 0.00 0.00 5.69
1110 1379 2.956987 CCGACCACGTACGTCCTT 59.043 61.111 19.94 5.18 37.88 3.36
1216 1485 3.565482 GCTGGAAGAGAACATCACAACAA 59.435 43.478 0.00 0.00 34.07 2.83
1245 1514 1.737816 CAACCCATGGCATGCTAGC 59.262 57.895 22.02 8.10 0.00 3.42
1246 1515 1.737816 GCAACCCATGGCATGCTAG 59.262 57.895 24.80 14.29 36.38 3.42
1247 1516 2.120282 CGCAACCCATGGCATGCTA 61.120 57.895 27.30 12.99 36.91 3.49
1251 1520 0.544223 TAGTACGCAACCCATGGCAT 59.456 50.000 6.09 0.00 0.00 4.40
1252 1521 0.107897 CTAGTACGCAACCCATGGCA 60.108 55.000 6.09 0.00 0.00 4.92
1270 1576 5.654603 TTCCATCGACACATGTTACTACT 57.345 39.130 0.00 0.00 0.00 2.57
1271 1577 5.234329 CCATTCCATCGACACATGTTACTAC 59.766 44.000 0.00 0.00 0.00 2.73
1272 1578 5.128008 TCCATTCCATCGACACATGTTACTA 59.872 40.000 0.00 0.00 0.00 1.82
1273 1579 4.081142 TCCATTCCATCGACACATGTTACT 60.081 41.667 0.00 0.00 0.00 2.24
1274 1580 4.188462 TCCATTCCATCGACACATGTTAC 58.812 43.478 0.00 0.00 0.00 2.50
1275 1581 4.479786 TCCATTCCATCGACACATGTTA 57.520 40.909 0.00 0.00 0.00 2.41
1276 1582 3.348647 TCCATTCCATCGACACATGTT 57.651 42.857 0.00 0.00 0.00 2.71
1298 1604 3.131577 TCCTTGTCGTACTTGAACACTGT 59.868 43.478 0.00 0.00 0.00 3.55
1495 1801 2.050144 TGGATCTACCAGGCCTTGATC 58.950 52.381 11.55 16.36 44.64 2.92
1545 1880 2.888594 CCAAGCATGCAATCCTCAAAG 58.111 47.619 21.98 0.00 0.00 2.77
1582 1917 2.594303 CCAGCAAGGCACGGACAA 60.594 61.111 0.00 0.00 0.00 3.18
1657 1994 8.836413 ACACATTATCCACGATAAATTAGGTTG 58.164 33.333 0.00 0.00 37.92 3.77
1677 2014 6.223852 AGTTTACTCGATGAAGACACACATT 58.776 36.000 0.00 0.00 0.00 2.71
1777 2169 3.752222 ACTATCCGTAAGTAGAGATGGCG 59.248 47.826 0.00 0.00 0.00 5.69
1784 2176 5.048013 CCATGCATGACTATCCGTAAGTAGA 60.048 44.000 28.31 0.00 0.00 2.59
1786 2178 4.830600 TCCATGCATGACTATCCGTAAGTA 59.169 41.667 28.31 0.00 0.00 2.24
1791 2183 3.558931 TTTCCATGCATGACTATCCGT 57.441 42.857 28.31 0.00 0.00 4.69
1794 2186 4.098349 TGCCTTTTTCCATGCATGACTATC 59.902 41.667 28.31 9.22 0.00 2.08
1985 2382 3.304123 CGCGTTGATGTGGGAACTTTTTA 60.304 43.478 0.00 0.00 0.00 1.52
1987 2384 1.001815 CGCGTTGATGTGGGAACTTTT 60.002 47.619 0.00 0.00 0.00 2.27
1997 2394 1.269361 TGATATACCGCGCGTTGATGT 60.269 47.619 29.95 20.71 0.00 3.06
2001 2398 1.698165 AGATGATATACCGCGCGTTG 58.302 50.000 29.95 17.12 0.00 4.10
2022 2419 2.678336 GCGCCTTAGCTTTCACACTAAT 59.322 45.455 0.00 0.00 36.60 1.73
2026 2423 2.544726 AGCGCCTTAGCTTTCACAC 58.455 52.632 2.29 0.00 46.80 3.82
2034 2431 0.811281 AATCAACCAAGCGCCTTAGC 59.189 50.000 2.29 0.00 37.41 3.09
2035 2432 3.689649 AGTTAATCAACCAAGCGCCTTAG 59.310 43.478 2.29 0.00 35.05 2.18
2040 2437 3.552604 TTCAGTTAATCAACCAAGCGC 57.447 42.857 0.00 0.00 35.05 5.92
2094 2491 3.068590 GCAAGTAGGTATGGCAATGCATT 59.931 43.478 5.99 5.99 33.00 3.56
2096 2493 2.023673 GCAAGTAGGTATGGCAATGCA 58.976 47.619 7.79 0.00 33.00 3.96
2097 2494 2.291741 GAGCAAGTAGGTATGGCAATGC 59.708 50.000 0.00 0.00 0.00 3.56
2098 2495 2.545526 CGAGCAAGTAGGTATGGCAATG 59.454 50.000 0.00 0.00 0.00 2.82
2099 2496 2.170607 ACGAGCAAGTAGGTATGGCAAT 59.829 45.455 0.00 0.00 0.00 3.56
2100 2497 1.553248 ACGAGCAAGTAGGTATGGCAA 59.447 47.619 0.00 0.00 0.00 4.52
2126 2523 7.448420 ACTAAGTATGTCATTATGCATGCTCT 58.552 34.615 20.33 8.90 37.13 4.09
2127 2524 7.664082 ACTAAGTATGTCATTATGCATGCTC 57.336 36.000 20.33 1.59 37.13 4.26
2128 2525 7.521099 GCAACTAAGTATGTCATTATGCATGCT 60.521 37.037 20.33 7.07 39.17 3.79
2129 2526 6.580041 GCAACTAAGTATGTCATTATGCATGC 59.420 38.462 11.82 11.82 32.13 4.06
2130 2527 7.868775 AGCAACTAAGTATGTCATTATGCATG 58.131 34.615 10.16 0.00 32.76 4.06
2131 2528 8.347771 CAAGCAACTAAGTATGTCATTATGCAT 58.652 33.333 3.79 3.79 32.76 3.96
2132 2529 7.336679 ACAAGCAACTAAGTATGTCATTATGCA 59.663 33.333 0.00 0.00 32.76 3.96
2133 2530 7.697691 ACAAGCAACTAAGTATGTCATTATGC 58.302 34.615 0.00 0.00 0.00 3.14
2134 2531 9.494479 CAACAAGCAACTAAGTATGTCATTATG 57.506 33.333 0.00 0.00 0.00 1.90
2135 2532 9.448438 TCAACAAGCAACTAAGTATGTCATTAT 57.552 29.630 0.00 0.00 0.00 1.28
2136 2533 8.717821 GTCAACAAGCAACTAAGTATGTCATTA 58.282 33.333 0.00 0.00 0.00 1.90
2137 2534 7.445402 AGTCAACAAGCAACTAAGTATGTCATT 59.555 33.333 0.00 0.00 0.00 2.57
2138 2535 6.936900 AGTCAACAAGCAACTAAGTATGTCAT 59.063 34.615 0.00 0.00 0.00 3.06
2139 2536 6.288294 AGTCAACAAGCAACTAAGTATGTCA 58.712 36.000 0.00 0.00 0.00 3.58
2140 2537 6.787085 AGTCAACAAGCAACTAAGTATGTC 57.213 37.500 0.00 0.00 0.00 3.06
2141 2538 7.095187 GCTAAGTCAACAAGCAACTAAGTATGT 60.095 37.037 3.47 0.00 36.26 2.29
2142 2539 7.237173 GCTAAGTCAACAAGCAACTAAGTATG 58.763 38.462 3.47 0.00 36.26 2.39
2143 2540 6.371825 GGCTAAGTCAACAAGCAACTAAGTAT 59.628 38.462 8.99 0.00 38.01 2.12
2144 2541 5.699458 GGCTAAGTCAACAAGCAACTAAGTA 59.301 40.000 8.99 0.00 38.01 2.24
2145 2542 4.515567 GGCTAAGTCAACAAGCAACTAAGT 59.484 41.667 8.99 0.00 38.01 2.24
2146 2543 4.083271 GGGCTAAGTCAACAAGCAACTAAG 60.083 45.833 8.99 0.00 38.01 2.18
2147 2544 3.818773 GGGCTAAGTCAACAAGCAACTAA 59.181 43.478 8.99 0.00 38.01 2.24
2148 2545 3.072476 AGGGCTAAGTCAACAAGCAACTA 59.928 43.478 8.99 0.00 38.01 2.24
2149 2546 2.158608 AGGGCTAAGTCAACAAGCAACT 60.159 45.455 8.99 4.79 38.01 3.16
2150 2547 2.230660 AGGGCTAAGTCAACAAGCAAC 58.769 47.619 8.99 3.08 38.01 4.17
2151 2548 2.656947 AGGGCTAAGTCAACAAGCAA 57.343 45.000 8.99 0.00 38.01 3.91
2152 2549 2.615493 GCTAGGGCTAAGTCAACAAGCA 60.615 50.000 8.99 0.00 38.01 3.91
2153 2550 2.010497 GCTAGGGCTAAGTCAACAAGC 58.990 52.381 0.00 0.00 35.22 4.01
2154 2551 2.633488 GGCTAGGGCTAAGTCAACAAG 58.367 52.381 0.00 0.00 38.73 3.16
2155 2552 1.280998 GGGCTAGGGCTAAGTCAACAA 59.719 52.381 0.00 0.00 38.73 2.83
2156 2553 0.909623 GGGCTAGGGCTAAGTCAACA 59.090 55.000 0.00 0.00 38.73 3.33
2157 2554 0.909623 TGGGCTAGGGCTAAGTCAAC 59.090 55.000 0.00 0.00 38.73 3.18
2158 2555 1.768870 GATGGGCTAGGGCTAAGTCAA 59.231 52.381 0.00 0.00 38.73 3.18
2159 2556 1.343985 TGATGGGCTAGGGCTAAGTCA 60.344 52.381 0.00 0.00 38.73 3.41
2160 2557 1.424638 TGATGGGCTAGGGCTAAGTC 58.575 55.000 0.00 0.00 38.73 3.01
2161 2558 1.490910 GTTGATGGGCTAGGGCTAAGT 59.509 52.381 0.00 0.00 38.73 2.24
2162 2559 1.202818 GGTTGATGGGCTAGGGCTAAG 60.203 57.143 0.00 0.00 38.73 2.18
2163 2560 0.843984 GGTTGATGGGCTAGGGCTAA 59.156 55.000 0.00 0.00 38.73 3.09
2164 2561 1.407656 CGGTTGATGGGCTAGGGCTA 61.408 60.000 0.00 0.00 38.73 3.93
2165 2562 2.746375 CGGTTGATGGGCTAGGGCT 61.746 63.158 0.00 0.00 38.73 5.19
2166 2563 2.203209 CGGTTGATGGGCTAGGGC 60.203 66.667 0.00 0.00 37.82 5.19
2167 2564 2.510906 CCGGTTGATGGGCTAGGG 59.489 66.667 0.00 0.00 0.00 3.53
2168 2565 2.070039 TCCCGGTTGATGGGCTAGG 61.070 63.158 0.00 0.00 46.92 3.02
2169 2566 1.146263 GTCCCGGTTGATGGGCTAG 59.854 63.158 0.00 0.00 46.92 3.42
2170 2567 1.202099 TTGTCCCGGTTGATGGGCTA 61.202 55.000 0.00 0.00 46.92 3.93
2171 2568 1.863155 ATTGTCCCGGTTGATGGGCT 61.863 55.000 0.00 0.00 46.92 5.19
2172 2569 0.970427 AATTGTCCCGGTTGATGGGC 60.970 55.000 0.00 0.00 46.92 5.36
2174 2571 3.676291 AAAAATTGTCCCGGTTGATGG 57.324 42.857 0.00 0.00 0.00 3.51
2192 2589 3.157932 CTGTTGCGACTTTGGGAAAAA 57.842 42.857 5.50 0.00 0.00 1.94
2193 2590 2.861462 CTGTTGCGACTTTGGGAAAA 57.139 45.000 5.50 0.00 0.00 2.29
2467 2864 1.975680 AGTACCGTTCATGTGAGGGTT 59.024 47.619 17.00 3.13 35.34 4.11
2468 2865 1.640917 AGTACCGTTCATGTGAGGGT 58.359 50.000 16.34 16.34 36.84 4.34
2469 2866 2.028476 TGAAGTACCGTTCATGTGAGGG 60.028 50.000 8.38 8.38 31.31 4.30
2470 2867 3.313012 TGAAGTACCGTTCATGTGAGG 57.687 47.619 0.00 0.00 31.31 3.86
2476 2873 6.322969 TCTGTATACCATGAAGTACCGTTCAT 59.677 38.462 0.00 4.87 46.09 2.57
2477 2874 5.653330 TCTGTATACCATGAAGTACCGTTCA 59.347 40.000 0.00 0.52 40.68 3.18
2478 2875 6.039047 TCTCTGTATACCATGAAGTACCGTTC 59.961 42.308 0.00 0.00 0.00 3.95
2479 2876 5.889853 TCTCTGTATACCATGAAGTACCGTT 59.110 40.000 0.00 0.00 0.00 4.44
2480 2877 5.443283 TCTCTGTATACCATGAAGTACCGT 58.557 41.667 0.00 0.00 0.00 4.83
2481 2878 5.563085 GCTCTCTGTATACCATGAAGTACCG 60.563 48.000 0.00 0.00 0.00 4.02
2482 2879 5.302059 TGCTCTCTGTATACCATGAAGTACC 59.698 44.000 0.00 0.00 0.00 3.34
2483 2880 6.039941 AGTGCTCTCTGTATACCATGAAGTAC 59.960 42.308 0.00 2.20 0.00 2.73
2484 2881 6.039829 CAGTGCTCTCTGTATACCATGAAGTA 59.960 42.308 0.00 0.00 0.00 2.24
2485 2882 4.959210 AGTGCTCTCTGTATACCATGAAGT 59.041 41.667 0.00 0.00 0.00 3.01
2486 2883 5.068329 TCAGTGCTCTCTGTATACCATGAAG 59.932 44.000 0.00 0.00 36.85 3.02
2487 2884 4.956075 TCAGTGCTCTCTGTATACCATGAA 59.044 41.667 0.00 0.00 36.85 2.57
2488 2885 4.536765 TCAGTGCTCTCTGTATACCATGA 58.463 43.478 0.00 0.00 36.85 3.07
2489 2886 4.926140 TCAGTGCTCTCTGTATACCATG 57.074 45.455 0.00 0.00 36.85 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.