Multiple sequence alignment - TraesCS7B01G114600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G114600 chr7B 100.000 4035 0 0 865 4899 133361057 133365091 0.000000e+00 7452.0
1 TraesCS7B01G114600 chr7B 100.000 581 0 0 1 581 133360193 133360773 0.000000e+00 1074.0
2 TraesCS7B01G114600 chr7B 88.627 255 25 4 6 257 670287496 670287243 1.710000e-79 307.0
3 TraesCS7B01G114600 chr7B 88.462 52 6 0 4800 4851 216792418 216792367 4.090000e-06 63.9
4 TraesCS7B01G114600 chr7A 94.439 3776 173 17 881 4643 170543032 170546783 0.000000e+00 5775.0
5 TraesCS7B01G114600 chr7A 91.121 428 34 4 1 426 170542415 170542840 1.180000e-160 577.0
6 TraesCS7B01G114600 chr7A 84.170 259 26 5 4641 4898 170564630 170564874 2.280000e-58 237.0
7 TraesCS7B01G114600 chr7A 94.118 102 4 1 470 571 170542845 170542944 2.360000e-33 154.0
8 TraesCS7B01G114600 chr7A 100.000 34 0 0 4798 4831 222966115 222966148 4.090000e-06 63.9
9 TraesCS7B01G114600 chr7D 94.788 1938 86 12 865 2791 168245280 168247213 0.000000e+00 3005.0
10 TraesCS7B01G114600 chr7D 89.238 1431 122 13 2800 4202 168247318 168248744 0.000000e+00 1760.0
11 TraesCS7B01G114600 chr7D 95.062 243 11 1 339 581 168244903 168245144 9.950000e-102 381.0
12 TraesCS7B01G114600 chr7D 87.451 255 28 4 6 257 186430528 186430781 1.730000e-74 291.0
13 TraesCS7B01G114600 chr3B 84.824 2952 351 53 1101 3994 20538914 20541826 0.000000e+00 2880.0
14 TraesCS7B01G114600 chr3B 79.624 319 52 12 4395 4706 475469199 475469511 2.970000e-52 217.0
15 TraesCS7B01G114600 chr3D 86.885 1708 151 37 1029 2690 14078709 14077029 0.000000e+00 1845.0
16 TraesCS7B01G114600 chr3D 82.812 1280 193 13 2770 4024 14076813 14075536 0.000000e+00 1120.0
17 TraesCS7B01G114600 chr3D 87.160 257 29 4 6 259 299349876 299349621 6.200000e-74 289.0
18 TraesCS7B01G114600 chr3D 78.824 340 56 14 4373 4701 365102490 365102824 1.070000e-51 215.0
19 TraesCS7B01G114600 chr3D 81.197 117 22 0 4783 4899 162173962 162174078 1.450000e-15 95.3
20 TraesCS7B01G114600 chr6A 88.235 255 26 4 6 257 454185987 454186240 7.970000e-78 302.0
21 TraesCS7B01G114600 chr2A 87.739 261 28 4 6 264 393191707 393191965 7.970000e-78 302.0
22 TraesCS7B01G114600 chr2A 85.217 115 17 0 4783 4897 389510500 389510386 8.610000e-23 119.0
23 TraesCS7B01G114600 chr4B 87.692 260 28 4 6 262 270402650 270402392 2.870000e-77 300.0
24 TraesCS7B01G114600 chr1B 88.048 251 27 3 6 253 542380016 542379766 1.330000e-75 294.0
25 TraesCS7B01G114600 chr2B 87.451 255 28 4 6 257 231313595 231313848 1.730000e-74 291.0
26 TraesCS7B01G114600 chr2B 80.198 101 17 3 4800 4899 9616882 9616784 6.800000e-09 73.1
27 TraesCS7B01G114600 chr6D 84.426 122 19 0 4778 4899 287676186 287676065 2.400000e-23 121.0
28 TraesCS7B01G114600 chr1D 83.333 102 17 0 4798 4899 476006870 476006769 1.450000e-15 95.3
29 TraesCS7B01G114600 chr4A 78.947 114 24 0 4782 4895 67316780 67316667 1.460000e-10 78.7
30 TraesCS7B01G114600 chr4A 80.392 102 19 1 4798 4899 64953015 64952915 5.260000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G114600 chr7B 133360193 133365091 4898 False 4263.000000 7452 100.000000 1 4899 2 chr7B.!!$F1 4898
1 TraesCS7B01G114600 chr7A 170542415 170546783 4368 False 2168.666667 5775 93.226000 1 4643 3 chr7A.!!$F3 4642
2 TraesCS7B01G114600 chr7D 168244903 168248744 3841 False 1715.333333 3005 93.029333 339 4202 3 chr7D.!!$F2 3863
3 TraesCS7B01G114600 chr3B 20538914 20541826 2912 False 2880.000000 2880 84.824000 1101 3994 1 chr3B.!!$F1 2893
4 TraesCS7B01G114600 chr3D 14075536 14078709 3173 True 1482.500000 1845 84.848500 1029 4024 2 chr3D.!!$R2 2995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 226 1.134401 TGCCTACATGACAGCCTTAGC 60.134 52.381 0.00 0.0 40.32 3.09 F
984 1010 1.377725 CAACGCCTGCCTCCTCAAT 60.378 57.895 0.00 0.0 0.00 2.57 F
1105 1141 0.108585 TGACCTGAGCAAGTTCCCAC 59.891 55.000 0.00 0.0 0.00 4.61 F
2943 3271 0.322546 AAGGACAACCCATTCTCCGC 60.323 55.000 0.00 0.0 37.41 5.54 F
3470 3824 0.248580 ACAAGCGTGTGCATTGTGTG 60.249 50.000 3.91 0.0 46.23 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1063 1091 0.544697 ATGGGGCCGACGACTTTATT 59.455 50.0 0.00 0.0 0.00 1.40 R
2079 2156 0.658897 GGCCAAACTCGTTGTCGAAA 59.341 50.0 0.00 0.0 45.61 3.46 R
3022 3350 0.526524 CGGCGCAGAAGAAGTAGGAG 60.527 60.0 10.83 0.0 0.00 3.69 R
3872 4227 0.031178 CCCAAGCTCAGCAACACAAC 59.969 55.0 0.00 0.0 0.00 3.32 R
4692 5059 0.032515 TATTGCCCGGACAGGAGAGA 60.033 55.0 0.73 0.0 45.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.860650 TTAGCAATATCCACAATAAATAGGTGT 57.139 29.630 0.00 0.00 0.00 4.16
53 54 1.210478 TGTTGATGCTAAGCTCCCCTC 59.790 52.381 0.00 0.00 0.00 4.30
86 87 8.108716 GCTTTAGCAACTAAACTATTTCATGC 57.891 34.615 0.00 0.00 41.59 4.06
95 96 4.741321 AACTATTTCATGCATTGGTGGG 57.259 40.909 0.00 0.00 0.00 4.61
135 137 3.921119 TTGCCTAAGTTCATGTGCTTG 57.079 42.857 12.43 5.32 0.00 4.01
149 151 1.615392 GTGCTTGGCATTGGTTCTTCT 59.385 47.619 0.00 0.00 41.91 2.85
157 159 2.827921 GCATTGGTTCTTCTTGGGTCAT 59.172 45.455 0.00 0.00 0.00 3.06
159 161 2.472695 TGGTTCTTCTTGGGTCATCG 57.527 50.000 0.00 0.00 0.00 3.84
169 171 3.007940 TCTTGGGTCATCGAACTCACATT 59.992 43.478 0.00 0.00 26.58 2.71
170 172 3.417069 TGGGTCATCGAACTCACATTT 57.583 42.857 0.00 0.00 0.00 2.32
185 187 9.660180 GAACTCACATTTCTCCTCTTTATTACT 57.340 33.333 0.00 0.00 0.00 2.24
186 188 9.660180 AACTCACATTTCTCCTCTTTATTACTC 57.340 33.333 0.00 0.00 0.00 2.59
187 189 8.816894 ACTCACATTTCTCCTCTTTATTACTCA 58.183 33.333 0.00 0.00 0.00 3.41
188 190 9.829507 CTCACATTTCTCCTCTTTATTACTCAT 57.170 33.333 0.00 0.00 0.00 2.90
201 203 9.551734 TCTTTATTACTCATCCACATCAGATTG 57.448 33.333 0.00 0.00 0.00 2.67
204 206 9.685276 TTATTACTCATCCACATCAGATTGTTT 57.315 29.630 0.00 0.00 0.00 2.83
224 226 1.134401 TGCCTACATGACAGCCTTAGC 60.134 52.381 0.00 0.00 40.32 3.09
239 241 5.994054 CAGCCTTAGCATATGTACAAGATGT 59.006 40.000 17.70 10.18 43.56 3.06
243 245 7.382110 CCTTAGCATATGTACAAGATGTAGCT 58.618 38.462 17.70 13.77 34.88 3.32
276 278 3.120269 CCTGAGTAGCCTAACTATACGCG 60.120 52.174 3.53 3.53 32.15 6.01
280 282 1.731969 GCCTAACTATACGCGCGGG 60.732 63.158 35.22 22.85 0.00 6.13
304 306 2.548067 CCGAGTCCATTTTAGGGATCCG 60.548 54.545 5.45 0.00 36.67 4.18
337 339 4.119862 GCGCTCATAAACTATCTTGGTGA 58.880 43.478 0.00 0.00 0.00 4.02
373 375 3.068590 CACCCTATAACGTAATGGTCCGT 59.931 47.826 0.00 0.00 39.32 4.69
472 474 5.810587 ACTCACACACATAATTAGTTAGCCG 59.189 40.000 0.00 0.00 0.00 5.52
509 511 9.486123 TTGATTCAACCCTCATCCAAAATAATA 57.514 29.630 0.00 0.00 0.00 0.98
896 922 8.150945 GGACATACAGTAGTTGTCATTATCCAT 58.849 37.037 13.86 0.00 41.29 3.41
984 1010 1.377725 CAACGCCTGCCTCCTCAAT 60.378 57.895 0.00 0.00 0.00 2.57
1027 1053 4.440525 CGTCCATTGATTGCCTTGCTAATT 60.441 41.667 0.00 0.00 0.00 1.40
1105 1141 0.108585 TGACCTGAGCAAGTTCCCAC 59.891 55.000 0.00 0.00 0.00 4.61
1192 1236 2.683933 TTGTCCTCCTCCTCGCCC 60.684 66.667 0.00 0.00 0.00 6.13
1272 1321 4.176271 GCAGCTTCTTTGTGTTGTTTCTT 58.824 39.130 0.00 0.00 0.00 2.52
1515 1582 4.675510 CTGGATTGAATTACCATGTGCAC 58.324 43.478 10.75 10.75 33.08 4.57
1546 1621 1.490490 GCCACTGAGACAATGGGGATA 59.510 52.381 1.65 0.00 33.81 2.59
1548 1623 3.748083 CCACTGAGACAATGGGGATATG 58.252 50.000 0.00 0.00 0.00 1.78
1549 1624 3.137176 CCACTGAGACAATGGGGATATGT 59.863 47.826 0.00 0.00 0.00 2.29
1809 1886 4.821589 GAGGGCGACTTCTGCGGG 62.822 72.222 0.00 0.00 32.80 6.13
2058 2135 2.203437 GTGGCCAACCCGTTCCTT 60.203 61.111 7.24 0.00 35.87 3.36
2129 2206 2.434359 CTTCCACCCGGACTTCGC 60.434 66.667 0.73 0.00 42.67 4.70
2139 2216 1.080974 GGACTTCGCGAAGAACGGA 60.081 57.895 45.43 14.95 40.79 4.69
2377 2462 1.002468 GCGATGTGTGTGTTTGCTTCT 60.002 47.619 0.00 0.00 0.00 2.85
2419 2511 4.504916 CCTCAGGCGACCTCTGCG 62.505 72.222 0.00 0.00 32.63 5.18
2696 2801 5.005740 TCATCCAGTTTGAAAGTCATCAGG 58.994 41.667 0.00 0.00 0.00 3.86
2699 2804 5.200483 TCCAGTTTGAAAGTCATCAGGTTT 58.800 37.500 0.00 0.00 0.00 3.27
2754 2863 4.780815 TGAAACTGTGACCAAGAGTGATT 58.219 39.130 0.00 0.00 0.00 2.57
2817 2958 4.344359 TGGCAACTGTGTATAGTTCACA 57.656 40.909 0.00 0.00 42.41 3.58
2943 3271 0.322546 AAGGACAACCCATTCTCCGC 60.323 55.000 0.00 0.00 37.41 5.54
3022 3350 2.654877 TTCGACTCCACGAAGCCC 59.345 61.111 0.00 0.00 45.21 5.19
3062 3390 1.218316 GTCGGCCAGGTAACCTCTG 59.782 63.158 2.24 0.00 37.17 3.35
3262 3606 1.107945 TCGACTCCATCAACGCCATA 58.892 50.000 0.00 0.00 0.00 2.74
3358 3702 1.227263 CCGCTCCATGACTAACCCG 60.227 63.158 0.00 0.00 0.00 5.28
3393 3737 3.069729 AGGTAATAATCACAGCCCTCGAC 59.930 47.826 0.00 0.00 0.00 4.20
3397 3741 1.541310 AATCACAGCCCTCGACCGAA 61.541 55.000 0.00 0.00 0.00 4.30
3415 3759 4.080582 ACCGAATTCATTCACCACCTCATA 60.081 41.667 6.22 0.00 36.61 2.15
3446 3800 5.979993 TGCTTTCATGGCATAATTTGTGAT 58.020 33.333 0.00 0.00 34.56 3.06
3462 3816 0.307453 TGATTGTGACAAGCGTGTGC 59.693 50.000 10.87 3.49 38.41 4.57
3470 3824 0.248580 ACAAGCGTGTGCATTGTGTG 60.249 50.000 3.91 0.00 46.23 3.82
3481 3836 6.380995 GTGTGCATTGTGTGATTTCATCTTA 58.619 36.000 0.00 0.00 0.00 2.10
3553 3908 4.807631 TCGGGGATCGAGACGCCA 62.808 66.667 21.59 10.76 43.74 5.69
3712 4067 4.097418 AGGACTTATACTTGCTCACCAGT 58.903 43.478 0.00 0.00 0.00 4.00
3872 4227 3.914312 ACGATGTTGACAGGAGTGTTAG 58.086 45.455 0.00 0.00 36.88 2.34
3877 4232 4.188462 TGTTGACAGGAGTGTTAGTTGTG 58.812 43.478 0.00 0.00 36.88 3.33
3928 4284 9.185192 GAACTATTTGTTTTCAGTTCAGAATGG 57.815 33.333 8.12 0.00 39.30 3.16
4000 4356 5.395768 GGGTACTCTCTCTATGTGTGCAATT 60.396 44.000 0.00 0.00 0.00 2.32
4260 4627 2.654863 ACCCTTCAACACAAAGTGAGG 58.345 47.619 3.88 0.29 36.96 3.86
4261 4628 1.956477 CCCTTCAACACAAAGTGAGGG 59.044 52.381 3.88 5.78 36.96 4.30
4263 4630 1.002468 CTTCAACACAAAGTGAGGGCG 60.002 52.381 3.88 0.00 36.96 6.13
4294 4661 4.748892 AGTGAGTTGATATGTGAAGGTCG 58.251 43.478 0.00 0.00 0.00 4.79
4300 4667 6.644347 AGTTGATATGTGAAGGTCGAAGATT 58.356 36.000 0.00 0.00 40.67 2.40
4327 4694 8.301730 TGACTCTAGTTAACCATTTTTACACG 57.698 34.615 0.88 0.00 0.00 4.49
4375 4742 3.499918 CGATTGGCTAACATTGATCTCCC 59.500 47.826 0.00 0.00 0.00 4.30
4382 4749 2.403252 ACATTGATCTCCCAACGTCC 57.597 50.000 0.00 0.00 0.00 4.79
4393 4760 2.162754 CAACGTCCGCGGACATACC 61.163 63.158 46.26 27.25 44.77 2.73
4413 4780 1.080434 GTCAGTGACCGAGCCTGTC 60.080 63.158 12.54 0.00 0.00 3.51
4421 4788 0.609131 ACCGAGCCTGTCCATTTTGG 60.609 55.000 0.00 0.00 39.43 3.28
4433 4800 3.517500 GTCCATTTTGGCCCTCCATTTTA 59.482 43.478 0.00 0.00 43.05 1.52
4444 4811 4.281688 GCCCTCCATTTTATGCATGTATGT 59.718 41.667 10.16 0.00 0.00 2.29
4447 4814 7.370383 CCCTCCATTTTATGCATGTATGTAAC 58.630 38.462 10.16 0.00 0.00 2.50
4454 4821 6.538189 TTATGCATGTATGTAACCATGTCG 57.462 37.500 10.16 0.00 40.42 4.35
4456 4823 2.348498 GCATGTATGTAACCATGTCGCG 60.348 50.000 0.00 0.00 40.42 5.87
4465 4832 0.102481 ACCATGTCGCGTACATCCTC 59.898 55.000 17.45 0.00 46.15 3.71
4496 4863 2.532235 CCGGTCAAATGCATGTGATTG 58.468 47.619 22.29 16.52 0.00 2.67
4499 4866 1.921887 GTCAAATGCATGTGATTGGCG 59.078 47.619 22.29 0.00 0.00 5.69
4518 4885 3.322254 GGCGGAGATGGAGAGAGAAATAA 59.678 47.826 0.00 0.00 0.00 1.40
4519 4886 4.202264 GGCGGAGATGGAGAGAGAAATAAA 60.202 45.833 0.00 0.00 0.00 1.40
4572 4939 4.959349 TCCTACGTGGAGGGTTGT 57.041 55.556 0.00 0.00 40.56 3.32
4580 4947 2.346365 GGAGGGTTGTCCGGACAC 59.654 66.667 36.40 27.77 41.67 3.67
4581 4948 2.513259 GGAGGGTTGTCCGGACACA 61.513 63.158 36.40 23.44 41.67 3.72
4582 4949 1.301479 GAGGGTTGTCCGGACACAC 60.301 63.158 36.40 31.01 41.67 3.82
4583 4950 2.281276 GGGTTGTCCGGACACACC 60.281 66.667 36.13 36.13 41.67 4.16
4584 4951 2.281276 GGTTGTCCGGACACACCC 60.281 66.667 35.10 30.13 41.67 4.61
4632 4999 5.939318 TTGGTATGGATATGGGGATTTCA 57.061 39.130 0.00 0.00 0.00 2.69
4634 5001 5.891198 TGGTATGGATATGGGGATTTCAAG 58.109 41.667 0.00 0.00 0.00 3.02
4643 5010 0.035439 GGGATTTCAAGACAGCCCGA 60.035 55.000 0.00 0.00 0.00 5.14
4644 5011 1.408822 GGGATTTCAAGACAGCCCGAT 60.409 52.381 0.00 0.00 0.00 4.18
4645 5012 1.943340 GGATTTCAAGACAGCCCGATC 59.057 52.381 0.00 0.00 0.00 3.69
4646 5013 2.632377 GATTTCAAGACAGCCCGATCA 58.368 47.619 0.00 0.00 0.00 2.92
4647 5014 2.787473 TTTCAAGACAGCCCGATCAT 57.213 45.000 0.00 0.00 0.00 2.45
4648 5015 3.904800 TTTCAAGACAGCCCGATCATA 57.095 42.857 0.00 0.00 0.00 2.15
4649 5016 4.422073 TTTCAAGACAGCCCGATCATAT 57.578 40.909 0.00 0.00 0.00 1.78
4650 5017 3.391506 TCAAGACAGCCCGATCATATG 57.608 47.619 0.00 0.00 0.00 1.78
4651 5018 2.037641 TCAAGACAGCCCGATCATATGG 59.962 50.000 2.13 0.00 0.00 2.74
4666 5033 3.587840 TGGGGACAAAGTGGGGAG 58.412 61.111 0.00 0.00 37.44 4.30
4667 5034 1.386772 TGGGGACAAAGTGGGGAGT 60.387 57.895 0.00 0.00 37.44 3.85
4668 5035 1.379146 GGGGACAAAGTGGGGAGTC 59.621 63.158 0.00 0.00 0.00 3.36
4669 5036 1.379146 GGGACAAAGTGGGGAGTCC 59.621 63.158 0.00 0.00 0.00 3.85
4670 5037 1.003718 GGACAAAGTGGGGAGTCCG 60.004 63.158 2.26 0.00 38.76 4.79
4671 5038 1.003718 GACAAAGTGGGGAGTCCGG 60.004 63.158 2.26 0.00 38.76 5.14
4672 5039 1.765597 GACAAAGTGGGGAGTCCGGT 61.766 60.000 0.00 0.00 38.76 5.28
4673 5040 1.350310 ACAAAGTGGGGAGTCCGGTT 61.350 55.000 0.00 0.00 38.76 4.44
4674 5041 0.889186 CAAAGTGGGGAGTCCGGTTG 60.889 60.000 0.00 0.00 38.76 3.77
4675 5042 2.064242 AAAGTGGGGAGTCCGGTTGG 62.064 60.000 0.00 0.00 38.76 3.77
4676 5043 4.029809 GTGGGGAGTCCGGTTGGG 62.030 72.222 0.00 0.00 38.76 4.12
4677 5044 4.585216 TGGGGAGTCCGGTTGGGT 62.585 66.667 0.00 0.00 38.76 4.51
4678 5045 4.029809 GGGGAGTCCGGTTGGGTG 62.030 72.222 0.00 0.00 37.00 4.61
4679 5046 3.246880 GGGAGTCCGGTTGGGTGT 61.247 66.667 0.00 0.00 37.00 4.16
4680 5047 1.914764 GGGAGTCCGGTTGGGTGTA 60.915 63.158 0.00 0.00 37.00 2.90
4681 5048 1.269703 GGGAGTCCGGTTGGGTGTAT 61.270 60.000 0.00 0.00 37.00 2.29
4682 5049 0.616891 GGAGTCCGGTTGGGTGTATT 59.383 55.000 0.00 0.00 37.00 1.89
4683 5050 1.003928 GGAGTCCGGTTGGGTGTATTT 59.996 52.381 0.00 0.00 37.00 1.40
4684 5051 2.553685 GGAGTCCGGTTGGGTGTATTTT 60.554 50.000 0.00 0.00 37.00 1.82
4685 5052 3.151554 GAGTCCGGTTGGGTGTATTTTT 58.848 45.455 0.00 0.00 37.00 1.94
4686 5053 3.151554 AGTCCGGTTGGGTGTATTTTTC 58.848 45.455 0.00 0.00 37.00 2.29
4687 5054 3.151554 GTCCGGTTGGGTGTATTTTTCT 58.848 45.455 0.00 0.00 37.00 2.52
4688 5055 3.189910 GTCCGGTTGGGTGTATTTTTCTC 59.810 47.826 0.00 0.00 37.00 2.87
4689 5056 3.073356 TCCGGTTGGGTGTATTTTTCTCT 59.927 43.478 0.00 0.00 37.00 3.10
4690 5057 3.824443 CCGGTTGGGTGTATTTTTCTCTT 59.176 43.478 0.00 0.00 0.00 2.85
4691 5058 4.082949 CCGGTTGGGTGTATTTTTCTCTTC 60.083 45.833 0.00 0.00 0.00 2.87
4692 5059 4.760204 CGGTTGGGTGTATTTTTCTCTTCT 59.240 41.667 0.00 0.00 0.00 2.85
4693 5060 5.106673 CGGTTGGGTGTATTTTTCTCTTCTC 60.107 44.000 0.00 0.00 0.00 2.87
4694 5061 6.004574 GGTTGGGTGTATTTTTCTCTTCTCT 58.995 40.000 0.00 0.00 0.00 3.10
4695 5062 6.149640 GGTTGGGTGTATTTTTCTCTTCTCTC 59.850 42.308 0.00 0.00 0.00 3.20
4696 5063 6.688073 TGGGTGTATTTTTCTCTTCTCTCT 57.312 37.500 0.00 0.00 0.00 3.10
4697 5064 6.702329 TGGGTGTATTTTTCTCTTCTCTCTC 58.298 40.000 0.00 0.00 0.00 3.20
4698 5065 6.110033 GGGTGTATTTTTCTCTTCTCTCTCC 58.890 44.000 0.00 0.00 0.00 3.71
4699 5066 6.070481 GGGTGTATTTTTCTCTTCTCTCTCCT 60.070 42.308 0.00 0.00 0.00 3.69
4700 5067 6.816140 GGTGTATTTTTCTCTTCTCTCTCCTG 59.184 42.308 0.00 0.00 0.00 3.86
4701 5068 7.382898 GTGTATTTTTCTCTTCTCTCTCCTGT 58.617 38.462 0.00 0.00 0.00 4.00
4702 5069 7.544217 GTGTATTTTTCTCTTCTCTCTCCTGTC 59.456 40.741 0.00 0.00 0.00 3.51
4703 5070 5.476091 TTTTTCTCTTCTCTCTCCTGTCC 57.524 43.478 0.00 0.00 0.00 4.02
4704 5071 2.411628 TCTCTTCTCTCTCCTGTCCG 57.588 55.000 0.00 0.00 0.00 4.79
4705 5072 1.065053 TCTCTTCTCTCTCCTGTCCGG 60.065 57.143 0.00 0.00 0.00 5.14
4706 5073 0.033991 TCTTCTCTCTCCTGTCCGGG 60.034 60.000 0.00 0.00 0.00 5.73
4707 5074 1.671901 CTTCTCTCTCCTGTCCGGGC 61.672 65.000 0.00 0.00 0.00 6.13
4708 5075 2.363018 CTCTCTCCTGTCCGGGCA 60.363 66.667 9.26 9.26 0.00 5.36
4709 5076 1.984570 CTCTCTCCTGTCCGGGCAA 60.985 63.158 11.40 0.00 0.00 4.52
4710 5077 1.306141 TCTCTCCTGTCCGGGCAAT 60.306 57.895 11.40 0.00 0.00 3.56
4711 5078 0.032515 TCTCTCCTGTCCGGGCAATA 60.033 55.000 11.40 0.00 0.00 1.90
4712 5079 0.390860 CTCTCCTGTCCGGGCAATAG 59.609 60.000 11.40 10.78 0.00 1.73
4713 5080 0.325296 TCTCCTGTCCGGGCAATAGT 60.325 55.000 11.40 0.00 0.00 2.12
4714 5081 0.179073 CTCCTGTCCGGGCAATAGTG 60.179 60.000 11.40 0.00 0.00 2.74
4726 5093 2.961526 CAATAGTGCTCGGGTAGTGT 57.038 50.000 0.00 0.00 0.00 3.55
4727 5094 2.810650 CAATAGTGCTCGGGTAGTGTC 58.189 52.381 0.00 0.00 0.00 3.67
4728 5095 1.400737 ATAGTGCTCGGGTAGTGTCC 58.599 55.000 0.00 0.00 0.00 4.02
4730 5097 3.066190 TGCTCGGGTAGTGTCCGG 61.066 66.667 0.00 0.00 46.78 5.14
4731 5098 2.753043 GCTCGGGTAGTGTCCGGA 60.753 66.667 0.00 0.00 46.78 5.14
4732 5099 3.061260 GCTCGGGTAGTGTCCGGAC 62.061 68.421 28.17 28.17 46.78 4.79
4733 5100 1.676635 CTCGGGTAGTGTCCGGACA 60.677 63.158 33.23 33.23 46.78 4.02
4734 5101 1.228521 TCGGGTAGTGTCCGGACAA 60.229 57.895 37.75 21.85 46.78 3.18
4735 5102 0.612732 TCGGGTAGTGTCCGGACAAT 60.613 55.000 36.44 36.44 46.78 2.71
4736 5103 0.179119 CGGGTAGTGTCCGGACAATC 60.179 60.000 38.10 27.34 43.77 2.67
4737 5104 1.192428 GGGTAGTGTCCGGACAATCT 58.808 55.000 38.10 31.18 43.77 2.40
4738 5105 1.134788 GGGTAGTGTCCGGACAATCTG 60.135 57.143 38.10 0.00 43.77 2.90
4739 5106 1.822990 GGTAGTGTCCGGACAATCTGA 59.177 52.381 38.10 20.64 43.77 3.27
4740 5107 2.431057 GGTAGTGTCCGGACAATCTGAT 59.569 50.000 38.10 21.14 43.77 2.90
4741 5108 2.680312 AGTGTCCGGACAATCTGATG 57.320 50.000 37.75 0.00 43.77 3.07
4742 5109 1.009829 GTGTCCGGACAATCTGATGC 58.990 55.000 37.75 19.40 43.77 3.91
4743 5110 0.460109 TGTCCGGACAATCTGATGCG 60.460 55.000 34.60 0.00 38.56 4.73
4744 5111 0.179111 GTCCGGACAATCTGATGCGA 60.179 55.000 29.75 0.00 0.00 5.10
4745 5112 0.179111 TCCGGACAATCTGATGCGAC 60.179 55.000 0.00 0.00 0.00 5.19
4746 5113 0.460109 CCGGACAATCTGATGCGACA 60.460 55.000 0.00 0.00 0.00 4.35
4747 5114 1.575244 CGGACAATCTGATGCGACAT 58.425 50.000 0.00 0.00 0.00 3.06
4748 5115 1.935873 CGGACAATCTGATGCGACATT 59.064 47.619 0.00 0.00 0.00 2.71
4749 5116 3.123050 CGGACAATCTGATGCGACATTA 58.877 45.455 0.00 0.00 0.00 1.90
4750 5117 3.183172 CGGACAATCTGATGCGACATTAG 59.817 47.826 0.00 5.61 0.00 1.73
4751 5118 3.496130 GGACAATCTGATGCGACATTAGG 59.504 47.826 10.22 0.89 0.00 2.69
4752 5119 3.470709 ACAATCTGATGCGACATTAGGG 58.529 45.455 10.22 5.30 0.00 3.53
4753 5120 2.810274 CAATCTGATGCGACATTAGGGG 59.190 50.000 10.22 0.71 0.00 4.79
4754 5121 0.758734 TCTGATGCGACATTAGGGGG 59.241 55.000 10.22 0.00 0.00 5.40
4755 5122 0.469917 CTGATGCGACATTAGGGGGT 59.530 55.000 0.00 0.00 0.00 4.95
4756 5123 0.916086 TGATGCGACATTAGGGGGTT 59.084 50.000 0.00 0.00 0.00 4.11
4757 5124 1.134220 TGATGCGACATTAGGGGGTTC 60.134 52.381 0.00 0.00 0.00 3.62
4758 5125 0.182775 ATGCGACATTAGGGGGTTCC 59.817 55.000 0.00 0.00 0.00 3.62
4759 5126 1.202099 TGCGACATTAGGGGGTTCCA 61.202 55.000 0.00 0.00 38.24 3.53
4760 5127 0.034863 GCGACATTAGGGGGTTCCAA 60.035 55.000 0.00 0.00 38.24 3.53
4761 5128 1.409661 GCGACATTAGGGGGTTCCAAT 60.410 52.381 0.00 0.00 38.24 3.16
4762 5129 2.948600 GCGACATTAGGGGGTTCCAATT 60.949 50.000 0.00 0.00 38.24 2.32
4763 5130 2.687935 CGACATTAGGGGGTTCCAATTG 59.312 50.000 0.00 0.00 38.24 2.32
4764 5131 3.708451 GACATTAGGGGGTTCCAATTGT 58.292 45.455 4.43 0.00 38.24 2.71
4765 5132 4.626771 CGACATTAGGGGGTTCCAATTGTA 60.627 45.833 4.43 0.00 38.24 2.41
4766 5133 4.867086 ACATTAGGGGGTTCCAATTGTAG 58.133 43.478 4.43 0.00 38.24 2.74
4767 5134 4.542525 ACATTAGGGGGTTCCAATTGTAGA 59.457 41.667 4.43 0.00 38.24 2.59
4768 5135 5.195756 ACATTAGGGGGTTCCAATTGTAGAT 59.804 40.000 4.43 0.00 38.24 1.98
4769 5136 3.669939 AGGGGGTTCCAATTGTAGATG 57.330 47.619 4.43 0.00 38.24 2.90
4770 5137 2.926329 AGGGGGTTCCAATTGTAGATGT 59.074 45.455 4.43 0.00 38.24 3.06
4771 5138 3.336694 AGGGGGTTCCAATTGTAGATGTT 59.663 43.478 4.43 0.00 38.24 2.71
4772 5139 3.447229 GGGGGTTCCAATTGTAGATGTTG 59.553 47.826 4.43 0.00 35.00 3.33
4773 5140 4.086457 GGGGTTCCAATTGTAGATGTTGT 58.914 43.478 4.43 0.00 0.00 3.32
4774 5141 4.082245 GGGGTTCCAATTGTAGATGTTGTG 60.082 45.833 4.43 0.00 0.00 3.33
4775 5142 4.764823 GGGTTCCAATTGTAGATGTTGTGA 59.235 41.667 4.43 0.00 0.00 3.58
4776 5143 5.106157 GGGTTCCAATTGTAGATGTTGTGAG 60.106 44.000 4.43 0.00 0.00 3.51
4777 5144 5.473504 GGTTCCAATTGTAGATGTTGTGAGT 59.526 40.000 4.43 0.00 0.00 3.41
4778 5145 6.373779 GTTCCAATTGTAGATGTTGTGAGTG 58.626 40.000 4.43 0.00 0.00 3.51
4779 5146 5.003160 TCCAATTGTAGATGTTGTGAGTGG 58.997 41.667 4.43 0.00 0.00 4.00
4780 5147 4.761739 CCAATTGTAGATGTTGTGAGTGGT 59.238 41.667 4.43 0.00 0.00 4.16
4781 5148 5.335113 CCAATTGTAGATGTTGTGAGTGGTG 60.335 44.000 4.43 0.00 0.00 4.17
4782 5149 3.401033 TGTAGATGTTGTGAGTGGTGG 57.599 47.619 0.00 0.00 0.00 4.61
4783 5150 2.703536 TGTAGATGTTGTGAGTGGTGGT 59.296 45.455 0.00 0.00 0.00 4.16
4784 5151 2.260844 AGATGTTGTGAGTGGTGGTG 57.739 50.000 0.00 0.00 0.00 4.17
4785 5152 0.593128 GATGTTGTGAGTGGTGGTGC 59.407 55.000 0.00 0.00 0.00 5.01
4786 5153 0.106769 ATGTTGTGAGTGGTGGTGCA 60.107 50.000 0.00 0.00 0.00 4.57
4787 5154 0.322906 TGTTGTGAGTGGTGGTGCAA 60.323 50.000 0.00 0.00 0.00 4.08
4788 5155 0.814457 GTTGTGAGTGGTGGTGCAAA 59.186 50.000 0.00 0.00 0.00 3.68
4789 5156 1.203523 GTTGTGAGTGGTGGTGCAAAA 59.796 47.619 0.00 0.00 0.00 2.44
4790 5157 1.774110 TGTGAGTGGTGGTGCAAAAT 58.226 45.000 0.00 0.00 0.00 1.82
4791 5158 2.937519 TGTGAGTGGTGGTGCAAAATA 58.062 42.857 0.00 0.00 0.00 1.40
4792 5159 2.621055 TGTGAGTGGTGGTGCAAAATAC 59.379 45.455 0.00 0.00 0.00 1.89
4793 5160 2.030274 GTGAGTGGTGGTGCAAAATACC 60.030 50.000 0.00 0.00 38.71 2.73
4794 5161 1.199097 GAGTGGTGGTGCAAAATACCG 59.801 52.381 0.00 0.00 41.18 4.02
4795 5162 0.388006 GTGGTGGTGCAAAATACCGC 60.388 55.000 7.45 7.45 45.65 5.68
4796 5163 0.538516 TGGTGGTGCAAAATACCGCT 60.539 50.000 7.54 0.00 45.66 5.52
4797 5164 1.271434 TGGTGGTGCAAAATACCGCTA 60.271 47.619 7.54 0.00 45.66 4.26
4798 5165 1.400494 GGTGGTGCAAAATACCGCTAG 59.600 52.381 7.54 0.00 45.66 3.42
4799 5166 2.352388 GTGGTGCAAAATACCGCTAGA 58.648 47.619 0.00 0.00 43.61 2.43
4800 5167 2.943033 GTGGTGCAAAATACCGCTAGAT 59.057 45.455 0.00 0.00 43.61 1.98
4801 5168 3.002348 GTGGTGCAAAATACCGCTAGATC 59.998 47.826 0.00 0.00 43.61 2.75
4802 5169 2.548480 GGTGCAAAATACCGCTAGATCC 59.452 50.000 0.00 0.00 0.00 3.36
4803 5170 2.548480 GTGCAAAATACCGCTAGATCCC 59.452 50.000 0.00 0.00 0.00 3.85
4804 5171 2.438021 TGCAAAATACCGCTAGATCCCT 59.562 45.455 0.00 0.00 0.00 4.20
4805 5172 3.118038 TGCAAAATACCGCTAGATCCCTT 60.118 43.478 0.00 0.00 0.00 3.95
4806 5173 3.251004 GCAAAATACCGCTAGATCCCTTG 59.749 47.826 0.00 0.00 0.00 3.61
4807 5174 3.771577 AAATACCGCTAGATCCCTTGG 57.228 47.619 0.00 0.00 0.00 3.61
4808 5175 2.400467 ATACCGCTAGATCCCTTGGT 57.600 50.000 0.00 3.23 0.00 3.67
4809 5176 3.537795 ATACCGCTAGATCCCTTGGTA 57.462 47.619 0.00 6.89 36.49 3.25
4810 5177 1.705873 ACCGCTAGATCCCTTGGTAG 58.294 55.000 0.00 0.00 0.00 3.18
4811 5178 0.969894 CCGCTAGATCCCTTGGTAGG 59.030 60.000 0.00 0.00 41.60 3.18
4821 5188 3.074281 TTGGTAGGGGTCCAAGCG 58.926 61.111 0.00 0.00 39.62 4.68
4822 5189 3.262448 TTGGTAGGGGTCCAAGCGC 62.262 63.158 0.00 0.00 39.62 5.92
4823 5190 3.712907 GGTAGGGGTCCAAGCGCA 61.713 66.667 11.47 0.00 0.00 6.09
4824 5191 2.125106 GTAGGGGTCCAAGCGCAG 60.125 66.667 11.47 0.38 0.00 5.18
4837 5204 3.506108 CGCAGCTGGAAATCTGGG 58.494 61.111 17.12 0.00 37.02 4.45
4838 5205 1.078214 CGCAGCTGGAAATCTGGGA 60.078 57.895 17.12 0.00 43.35 4.37
4839 5206 1.372087 CGCAGCTGGAAATCTGGGAC 61.372 60.000 17.12 0.00 43.35 4.46
4840 5207 1.034292 GCAGCTGGAAATCTGGGACC 61.034 60.000 17.12 0.00 0.00 4.46
4841 5208 0.329261 CAGCTGGAAATCTGGGACCA 59.671 55.000 5.57 0.00 0.00 4.02
4849 5216 3.377656 TCTGGGACCAGAGTTCGC 58.622 61.111 16.79 0.00 46.80 4.70
4850 5217 1.533033 TCTGGGACCAGAGTTCGCA 60.533 57.895 16.79 0.00 46.80 5.10
4851 5218 1.374758 CTGGGACCAGAGTTCGCAC 60.375 63.158 13.06 0.00 46.30 5.34
4852 5219 2.099652 CTGGGACCAGAGTTCGCACA 62.100 60.000 13.06 0.00 46.30 4.57
4853 5220 1.070786 GGGACCAGAGTTCGCACAA 59.929 57.895 0.00 0.00 0.00 3.33
4854 5221 0.534203 GGGACCAGAGTTCGCACAAA 60.534 55.000 0.00 0.00 0.00 2.83
4855 5222 0.868406 GGACCAGAGTTCGCACAAAG 59.132 55.000 0.00 0.00 0.00 2.77
4856 5223 0.868406 GACCAGAGTTCGCACAAAGG 59.132 55.000 0.00 0.00 0.00 3.11
4857 5224 0.180406 ACCAGAGTTCGCACAAAGGT 59.820 50.000 0.00 0.00 0.00 3.50
4858 5225 1.308998 CCAGAGTTCGCACAAAGGTT 58.691 50.000 0.00 0.00 0.00 3.50
4859 5226 1.676006 CCAGAGTTCGCACAAAGGTTT 59.324 47.619 0.00 0.00 0.00 3.27
4860 5227 2.099098 CCAGAGTTCGCACAAAGGTTTT 59.901 45.455 0.00 0.00 0.00 2.43
4861 5228 3.314080 CCAGAGTTCGCACAAAGGTTTTA 59.686 43.478 0.00 0.00 0.00 1.52
4862 5229 4.279659 CAGAGTTCGCACAAAGGTTTTAC 58.720 43.478 0.00 0.00 0.00 2.01
4863 5230 3.314357 AGAGTTCGCACAAAGGTTTTACC 59.686 43.478 0.00 0.00 38.99 2.85
4864 5231 2.359848 AGTTCGCACAAAGGTTTTACCC 59.640 45.455 0.00 0.00 39.75 3.69
4865 5232 2.054232 TCGCACAAAGGTTTTACCCA 57.946 45.000 0.00 0.00 39.75 4.51
4866 5233 2.376109 TCGCACAAAGGTTTTACCCAA 58.624 42.857 0.00 0.00 39.75 4.12
4867 5234 2.359531 TCGCACAAAGGTTTTACCCAAG 59.640 45.455 0.00 0.00 39.75 3.61
4868 5235 2.100087 CGCACAAAGGTTTTACCCAAGT 59.900 45.455 0.00 0.00 39.75 3.16
4869 5236 3.429684 CGCACAAAGGTTTTACCCAAGTT 60.430 43.478 0.00 0.00 39.75 2.66
4870 5237 4.116961 GCACAAAGGTTTTACCCAAGTTC 58.883 43.478 0.00 0.00 39.75 3.01
4871 5238 4.356289 CACAAAGGTTTTACCCAAGTTCG 58.644 43.478 0.00 0.00 39.75 3.95
4872 5239 4.018490 ACAAAGGTTTTACCCAAGTTCGT 58.982 39.130 0.00 0.00 39.75 3.85
4873 5240 4.142337 ACAAAGGTTTTACCCAAGTTCGTG 60.142 41.667 0.00 0.00 39.75 4.35
4874 5241 1.951602 AGGTTTTACCCAAGTTCGTGC 59.048 47.619 0.00 0.00 39.75 5.34
4875 5242 1.001048 GGTTTTACCCAAGTTCGTGCC 60.001 52.381 0.00 0.00 30.04 5.01
4876 5243 1.951602 GTTTTACCCAAGTTCGTGCCT 59.048 47.619 0.00 0.00 0.00 4.75
4877 5244 1.886886 TTTACCCAAGTTCGTGCCTC 58.113 50.000 0.00 0.00 0.00 4.70
4878 5245 1.053424 TTACCCAAGTTCGTGCCTCT 58.947 50.000 0.00 0.00 0.00 3.69
4879 5246 0.320374 TACCCAAGTTCGTGCCTCTG 59.680 55.000 0.00 0.00 0.00 3.35
4880 5247 1.071471 CCCAAGTTCGTGCCTCTGT 59.929 57.895 0.00 0.00 0.00 3.41
4881 5248 1.230635 CCCAAGTTCGTGCCTCTGTG 61.231 60.000 0.00 0.00 0.00 3.66
4882 5249 1.230635 CCAAGTTCGTGCCTCTGTGG 61.231 60.000 0.00 0.00 39.35 4.17
4883 5250 0.249868 CAAGTTCGTGCCTCTGTGGA 60.250 55.000 0.00 0.00 38.35 4.02
4884 5251 0.034059 AAGTTCGTGCCTCTGTGGAG 59.966 55.000 0.00 0.00 38.35 3.86
4885 5252 1.115930 AGTTCGTGCCTCTGTGGAGT 61.116 55.000 0.00 0.00 37.86 3.85
4886 5253 0.601558 GTTCGTGCCTCTGTGGAGTA 59.398 55.000 0.00 0.00 37.86 2.59
4887 5254 1.000506 GTTCGTGCCTCTGTGGAGTAA 59.999 52.381 0.00 0.00 37.86 2.24
4888 5255 1.557099 TCGTGCCTCTGTGGAGTAAT 58.443 50.000 0.00 0.00 37.86 1.89
4889 5256 2.730382 TCGTGCCTCTGTGGAGTAATA 58.270 47.619 0.00 0.00 37.86 0.98
4890 5257 2.426024 TCGTGCCTCTGTGGAGTAATAC 59.574 50.000 0.00 0.00 37.86 1.89
4891 5258 2.481449 CGTGCCTCTGTGGAGTAATACC 60.481 54.545 0.00 0.00 37.86 2.73
4892 5259 2.116238 TGCCTCTGTGGAGTAATACCC 58.884 52.381 0.00 0.00 37.86 3.69
4893 5260 2.292918 TGCCTCTGTGGAGTAATACCCT 60.293 50.000 0.00 0.00 37.86 4.34
4894 5261 3.052414 TGCCTCTGTGGAGTAATACCCTA 60.052 47.826 0.00 0.00 37.86 3.53
4895 5262 3.321396 GCCTCTGTGGAGTAATACCCTAC 59.679 52.174 0.00 0.00 37.86 3.18
4896 5263 4.543689 CCTCTGTGGAGTAATACCCTACA 58.456 47.826 0.00 0.00 37.86 2.74
4897 5264 5.148502 CCTCTGTGGAGTAATACCCTACAT 58.851 45.833 0.00 0.00 37.86 2.29
4898 5265 5.244178 CCTCTGTGGAGTAATACCCTACATC 59.756 48.000 0.00 0.00 37.86 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.522830 CAAGTGAAACACCTATTTATTGTGGAT 58.477 33.333 0.00 0.00 41.43 3.41
17 18 6.040842 AGCATCAACAAGTGAAACACCTATTT 59.959 34.615 0.00 0.00 40.50 1.40
18 19 5.536161 AGCATCAACAAGTGAAACACCTATT 59.464 36.000 0.00 0.00 40.50 1.73
23 24 4.676924 GCTTAGCATCAACAAGTGAAACAC 59.323 41.667 0.00 0.00 40.50 3.32
26 27 4.216257 GGAGCTTAGCATCAACAAGTGAAA 59.784 41.667 7.07 0.00 40.50 2.69
112 114 4.935352 AGCACATGAACTTAGGCAAAAA 57.065 36.364 0.00 0.00 0.00 1.94
122 124 1.274167 CCAATGCCAAGCACATGAACT 59.726 47.619 0.00 0.00 43.04 3.01
135 137 1.546029 GACCCAAGAAGAACCAATGCC 59.454 52.381 0.00 0.00 0.00 4.40
149 151 3.417069 AATGTGAGTTCGATGACCCAA 57.583 42.857 0.00 0.00 0.00 4.12
157 159 4.873746 AAGAGGAGAAATGTGAGTTCGA 57.126 40.909 0.00 0.00 0.00 3.71
159 161 9.660180 AGTAATAAAGAGGAGAAATGTGAGTTC 57.340 33.333 0.00 0.00 0.00 3.01
169 171 7.733773 TGTGGATGAGTAATAAAGAGGAGAA 57.266 36.000 0.00 0.00 0.00 2.87
170 172 7.565029 TGATGTGGATGAGTAATAAAGAGGAGA 59.435 37.037 0.00 0.00 0.00 3.71
185 187 3.444742 GGCAAACAATCTGATGTGGATGA 59.555 43.478 0.00 0.00 32.81 2.92
186 188 3.446161 AGGCAAACAATCTGATGTGGATG 59.554 43.478 0.00 0.00 32.81 3.51
187 189 3.705051 AGGCAAACAATCTGATGTGGAT 58.295 40.909 0.00 0.00 32.81 3.41
188 190 3.159213 AGGCAAACAATCTGATGTGGA 57.841 42.857 0.00 0.00 32.81 4.02
201 203 1.826385 AGGCTGTCATGTAGGCAAAC 58.174 50.000 21.42 1.20 42.62 2.93
204 206 1.134401 GCTAAGGCTGTCATGTAGGCA 60.134 52.381 21.42 7.30 42.62 4.75
224 226 6.205464 CCCCAAAGCTACATCTTGTACATATG 59.795 42.308 14.18 14.18 0.00 1.78
239 241 2.127297 AGGCCCTCCCCAAAGCTA 59.873 61.111 0.00 0.00 0.00 3.32
243 245 0.914417 CTACTCAGGCCCTCCCCAAA 60.914 60.000 0.00 0.00 0.00 3.28
280 282 4.502777 GGATCCCTAAAATGGACTCGGTAC 60.503 50.000 0.00 0.00 33.94 3.34
285 287 3.118371 ACACGGATCCCTAAAATGGACTC 60.118 47.826 6.06 0.00 33.94 3.36
286 288 2.844348 ACACGGATCCCTAAAATGGACT 59.156 45.455 6.06 0.00 33.94 3.85
304 306 1.939974 TATGAGCGCATCTCCAACAC 58.060 50.000 11.47 0.00 41.18 3.32
362 364 1.202498 GGCCTAGTGACGGACCATTAC 60.202 57.143 0.00 0.00 0.00 1.89
445 447 8.512138 GGCTAACTAATTATGTGTGTGAGTTTT 58.488 33.333 0.00 0.00 0.00 2.43
472 474 6.262273 TGAGGGTTGAATCAAACAACTAACTC 59.738 38.462 13.49 9.15 44.50 3.01
509 511 2.933928 GCTAAAGGACGAACGTTCCCAT 60.934 50.000 22.07 8.94 0.00 4.00
896 922 2.038426 AGACAATCAACGGACCACATGA 59.962 45.455 0.00 0.00 0.00 3.07
984 1010 2.037641 CGACATGCTGGATAATGGAGGA 59.962 50.000 0.00 0.00 0.00 3.71
1063 1091 0.544697 ATGGGGCCGACGACTTTATT 59.455 50.000 0.00 0.00 0.00 1.40
1105 1141 2.510664 CTCGGGAAGGAGGAGAAGG 58.489 63.158 0.00 0.00 0.00 3.46
1192 1236 2.124403 GCCATGGCTGTCCTGGAG 60.124 66.667 29.98 0.00 38.26 3.86
1272 1321 5.817296 AGCATAATAATCACAAACTGCTCGA 59.183 36.000 0.00 0.00 33.73 4.04
1417 1467 1.089920 GCGTGCCTGAGATGTTCATT 58.910 50.000 0.00 0.00 34.68 2.57
1689 1766 1.072266 TGCAGGTATCCCACACCTTT 58.928 50.000 0.00 0.00 44.18 3.11
1947 2024 4.555709 AACACGCGGTTGGAGCCA 62.556 61.111 12.47 0.00 38.60 4.75
2058 2135 4.090723 ACCTCGTCGGTGATGTCA 57.909 55.556 0.00 0.00 46.80 3.58
2079 2156 0.658897 GGCCAAACTCGTTGTCGAAA 59.341 50.000 0.00 0.00 45.61 3.46
2139 2216 1.811359 CTGTAGGAGACGAAGAACCGT 59.189 52.381 0.00 0.00 46.43 4.83
2419 2511 4.493747 CTCGCCTCCGTCGGGTTC 62.494 72.222 12.29 0.00 35.54 3.62
2512 2604 3.552068 CGTCGCCCATCATGAAGTACATA 60.552 47.826 0.00 0.00 37.46 2.29
2727 2836 4.949856 ACTCTTGGTCACAGTTTCAATTGT 59.050 37.500 5.13 0.00 0.00 2.71
2743 2852 5.979517 GGTTTCAGTTCAAAATCACTCTTGG 59.020 40.000 0.00 0.00 0.00 3.61
2744 2853 5.979517 GGGTTTCAGTTCAAAATCACTCTTG 59.020 40.000 0.00 0.00 0.00 3.02
3022 3350 0.526524 CGGCGCAGAAGAAGTAGGAG 60.527 60.000 10.83 0.00 0.00 3.69
3118 3462 4.211164 TCATACAAAGACTGCAAACTCACG 59.789 41.667 0.00 0.00 0.00 4.35
3262 3606 0.746563 CGTAACCCATGACCGGCATT 60.747 55.000 0.00 0.00 34.15 3.56
3381 3725 1.079127 AATTCGGTCGAGGGCTGTG 60.079 57.895 0.00 0.00 0.00 3.66
3393 3737 2.710377 TGAGGTGGTGAATGAATTCGG 58.290 47.619 0.04 0.00 39.62 4.30
3397 3741 7.121382 AGAACAATATGAGGTGGTGAATGAAT 58.879 34.615 0.00 0.00 0.00 2.57
3415 3759 4.546829 ATGCCATGAAAGCAAGAACAAT 57.453 36.364 0.00 0.00 44.83 2.71
3446 3800 0.737804 AATGCACACGCTTGTCACAA 59.262 45.000 0.00 0.00 39.64 3.33
3470 3824 6.916387 CACACATGCAAGGATAAGATGAAATC 59.084 38.462 0.00 0.00 46.04 2.17
3481 3836 3.263170 TGTACCTACACACATGCAAGGAT 59.737 43.478 5.36 0.00 36.30 3.24
3553 3908 2.097110 TGTACACCCCACTGTTCTCT 57.903 50.000 0.00 0.00 0.00 3.10
3712 4067 1.150560 ACCACCCTGTACACTCCCTTA 59.849 52.381 0.00 0.00 0.00 2.69
3860 4215 2.943033 GCAACACAACTAACACTCCTGT 59.057 45.455 0.00 0.00 0.00 4.00
3872 4227 0.031178 CCCAAGCTCAGCAACACAAC 59.969 55.000 0.00 0.00 0.00 3.32
4027 4383 6.135400 TCGCGCAATATTTGACTCATAATTG 58.865 36.000 8.75 0.00 0.00 2.32
4034 4390 3.725740 CCATTTCGCGCAATATTTGACTC 59.274 43.478 8.75 0.00 0.00 3.36
4101 4462 6.183360 CCGAGGATTACACCATTTTCCTTTAC 60.183 42.308 0.00 0.00 36.95 2.01
4114 4475 0.179119 CCACCGTCCGAGGATTACAC 60.179 60.000 0.00 0.00 34.73 2.90
4221 4588 3.066760 GGGTTAACCAAGATGTGCTATGC 59.933 47.826 25.71 0.00 39.85 3.14
4223 4590 4.862641 AGGGTTAACCAAGATGTGCTAT 57.137 40.909 25.71 0.00 43.89 2.97
4260 4627 3.128349 TCAACTCACTTACACTTTCGCC 58.872 45.455 0.00 0.00 0.00 5.54
4261 4628 4.992381 ATCAACTCACTTACACTTTCGC 57.008 40.909 0.00 0.00 0.00 4.70
4263 4630 8.534333 TCACATATCAACTCACTTACACTTTC 57.466 34.615 0.00 0.00 0.00 2.62
4326 4693 2.007360 AGATGCTCTCACTTGCTTCG 57.993 50.000 0.00 0.00 38.07 3.79
4327 4694 3.854666 TGTAGATGCTCTCACTTGCTTC 58.145 45.455 0.00 0.00 34.77 3.86
4350 4717 5.490139 AGATCAATGTTAGCCAATCGTTG 57.510 39.130 0.00 0.00 0.00 4.10
4399 4766 0.321653 AAATGGACAGGCTCGGTCAC 60.322 55.000 7.22 0.00 37.00 3.67
4421 4788 4.281688 ACATACATGCATAAAATGGAGGGC 59.718 41.667 15.55 0.00 36.69 5.19
4433 4800 3.250762 GCGACATGGTTACATACATGCAT 59.749 43.478 0.00 0.00 46.35 3.96
4454 4821 2.032178 GCAATTTGAGGAGGATGTACGC 59.968 50.000 0.00 0.00 0.00 4.42
4456 4823 2.952310 GGGCAATTTGAGGAGGATGTAC 59.048 50.000 0.00 0.00 0.00 2.90
4465 4832 0.965439 TTTGACCGGGCAATTTGAGG 59.035 50.000 26.67 2.79 0.00 3.86
4496 4863 1.115467 TTTCTCTCTCCATCTCCGCC 58.885 55.000 0.00 0.00 0.00 6.13
4518 4885 8.583296 CCTGGATCATCTTTTCTCTTTCTTTTT 58.417 33.333 0.00 0.00 0.00 1.94
4519 4886 7.178097 CCCTGGATCATCTTTTCTCTTTCTTTT 59.822 37.037 0.00 0.00 0.00 2.27
4526 4893 3.201708 CCACCCTGGATCATCTTTTCTCT 59.798 47.826 0.00 0.00 40.96 3.10
4534 4901 1.150081 CAGCCCACCCTGGATCATC 59.850 63.158 0.00 0.00 40.96 2.92
4537 4904 3.065787 ATGCAGCCCACCCTGGATC 62.066 63.158 0.00 0.00 39.30 3.36
4541 4908 2.377810 TAGGATGCAGCCCACCCTG 61.378 63.158 19.48 0.00 35.93 4.45
4542 4909 2.042762 TAGGATGCAGCCCACCCT 59.957 61.111 19.48 0.09 0.00 4.34
4580 4947 0.249741 GATACGGGGATGTTCGGGTG 60.250 60.000 0.00 0.00 0.00 4.61
4581 4948 1.405272 GGATACGGGGATGTTCGGGT 61.405 60.000 0.00 0.00 0.00 5.28
4582 4949 1.119574 AGGATACGGGGATGTTCGGG 61.120 60.000 0.00 0.00 46.39 5.14
4583 4950 0.317479 GAGGATACGGGGATGTTCGG 59.683 60.000 0.00 0.00 46.39 4.30
4584 4951 0.317479 GGAGGATACGGGGATGTTCG 59.683 60.000 0.00 0.00 46.39 3.95
4585 4952 0.685660 GGGAGGATACGGGGATGTTC 59.314 60.000 0.00 0.00 46.39 3.18
4586 4953 0.767060 GGGGAGGATACGGGGATGTT 60.767 60.000 0.00 0.00 46.39 2.71
4587 4954 1.152096 GGGGAGGATACGGGGATGT 60.152 63.158 0.00 0.00 46.39 3.06
4588 4955 0.547712 ATGGGGAGGATACGGGGATG 60.548 60.000 0.00 0.00 46.39 3.51
4589 4956 1.098589 TATGGGGAGGATACGGGGAT 58.901 55.000 0.00 0.00 46.39 3.85
4619 4986 3.437052 GGGCTGTCTTGAAATCCCCATAT 60.437 47.826 0.00 0.00 0.00 1.78
4624 4991 0.035439 TCGGGCTGTCTTGAAATCCC 60.035 55.000 0.00 0.00 0.00 3.85
4632 4999 1.349026 CCCATATGATCGGGCTGTCTT 59.651 52.381 3.65 0.00 35.09 3.01
4634 5001 0.036010 CCCCATATGATCGGGCTGTC 60.036 60.000 3.65 0.00 41.57 3.51
4643 5010 2.177669 CCCCACTTTGTCCCCATATGAT 59.822 50.000 3.65 0.00 0.00 2.45
4644 5011 1.568597 CCCCACTTTGTCCCCATATGA 59.431 52.381 3.65 0.00 0.00 2.15
4645 5012 1.568597 TCCCCACTTTGTCCCCATATG 59.431 52.381 0.00 0.00 0.00 1.78
4646 5013 1.852965 CTCCCCACTTTGTCCCCATAT 59.147 52.381 0.00 0.00 0.00 1.78
4647 5014 1.295020 CTCCCCACTTTGTCCCCATA 58.705 55.000 0.00 0.00 0.00 2.74
4648 5015 0.776080 ACTCCCCACTTTGTCCCCAT 60.776 55.000 0.00 0.00 0.00 4.00
4649 5016 1.386772 ACTCCCCACTTTGTCCCCA 60.387 57.895 0.00 0.00 0.00 4.96
4650 5017 1.379146 GACTCCCCACTTTGTCCCC 59.621 63.158 0.00 0.00 0.00 4.81
4651 5018 1.379146 GGACTCCCCACTTTGTCCC 59.621 63.158 0.00 0.00 42.11 4.46
4652 5019 1.003718 CGGACTCCCCACTTTGTCC 60.004 63.158 0.00 0.00 43.86 4.02
4653 5020 1.003718 CCGGACTCCCCACTTTGTC 60.004 63.158 0.00 0.00 34.14 3.18
4654 5021 1.350310 AACCGGACTCCCCACTTTGT 61.350 55.000 9.46 0.00 34.14 2.83
4655 5022 0.889186 CAACCGGACTCCCCACTTTG 60.889 60.000 9.46 0.00 34.14 2.77
4656 5023 1.454539 CAACCGGACTCCCCACTTT 59.545 57.895 9.46 0.00 34.14 2.66
4657 5024 2.526046 CCAACCGGACTCCCCACTT 61.526 63.158 9.46 0.00 34.14 3.16
4658 5025 2.928396 CCAACCGGACTCCCCACT 60.928 66.667 9.46 0.00 34.14 4.00
4659 5026 4.029809 CCCAACCGGACTCCCCAC 62.030 72.222 9.46 0.00 34.14 4.61
4660 5027 4.585216 ACCCAACCGGACTCCCCA 62.585 66.667 9.46 0.00 34.64 4.96
4661 5028 4.029809 CACCCAACCGGACTCCCC 62.030 72.222 9.46 0.00 34.64 4.81
4662 5029 1.269703 ATACACCCAACCGGACTCCC 61.270 60.000 9.46 0.00 34.64 4.30
4663 5030 0.616891 AATACACCCAACCGGACTCC 59.383 55.000 9.46 0.00 34.64 3.85
4664 5031 2.484742 AAATACACCCAACCGGACTC 57.515 50.000 9.46 0.00 34.64 3.36
4665 5032 2.963599 AAAATACACCCAACCGGACT 57.036 45.000 9.46 0.00 34.64 3.85
4666 5033 3.151554 AGAAAAATACACCCAACCGGAC 58.848 45.455 9.46 0.00 34.64 4.79
4667 5034 3.073356 AGAGAAAAATACACCCAACCGGA 59.927 43.478 9.46 0.00 34.64 5.14
4668 5035 3.418047 AGAGAAAAATACACCCAACCGG 58.582 45.455 0.00 0.00 37.81 5.28
4669 5036 4.760204 AGAAGAGAAAAATACACCCAACCG 59.240 41.667 0.00 0.00 0.00 4.44
4670 5037 6.004574 AGAGAAGAGAAAAATACACCCAACC 58.995 40.000 0.00 0.00 0.00 3.77
4671 5038 6.937465 AGAGAGAAGAGAAAAATACACCCAAC 59.063 38.462 0.00 0.00 0.00 3.77
4672 5039 7.079451 AGAGAGAAGAGAAAAATACACCCAA 57.921 36.000 0.00 0.00 0.00 4.12
4673 5040 6.295916 GGAGAGAGAAGAGAAAAATACACCCA 60.296 42.308 0.00 0.00 0.00 4.51
4674 5041 6.070481 AGGAGAGAGAAGAGAAAAATACACCC 60.070 42.308 0.00 0.00 0.00 4.61
4675 5042 6.816140 CAGGAGAGAGAAGAGAAAAATACACC 59.184 42.308 0.00 0.00 0.00 4.16
4676 5043 7.382898 ACAGGAGAGAGAAGAGAAAAATACAC 58.617 38.462 0.00 0.00 0.00 2.90
4677 5044 7.310113 GGACAGGAGAGAGAAGAGAAAAATACA 60.310 40.741 0.00 0.00 0.00 2.29
4678 5045 7.039270 GGACAGGAGAGAGAAGAGAAAAATAC 58.961 42.308 0.00 0.00 0.00 1.89
4679 5046 6.127591 CGGACAGGAGAGAGAAGAGAAAAATA 60.128 42.308 0.00 0.00 0.00 1.40
4680 5047 5.337169 CGGACAGGAGAGAGAAGAGAAAAAT 60.337 44.000 0.00 0.00 0.00 1.82
4681 5048 4.021894 CGGACAGGAGAGAGAAGAGAAAAA 60.022 45.833 0.00 0.00 0.00 1.94
4682 5049 3.508012 CGGACAGGAGAGAGAAGAGAAAA 59.492 47.826 0.00 0.00 0.00 2.29
4683 5050 3.085533 CGGACAGGAGAGAGAAGAGAAA 58.914 50.000 0.00 0.00 0.00 2.52
4684 5051 2.619332 CCGGACAGGAGAGAGAAGAGAA 60.619 54.545 0.00 0.00 45.00 2.87
4685 5052 1.065053 CCGGACAGGAGAGAGAAGAGA 60.065 57.143 0.00 0.00 45.00 3.10
4686 5053 1.388547 CCGGACAGGAGAGAGAAGAG 58.611 60.000 0.00 0.00 45.00 2.85
4687 5054 0.033991 CCCGGACAGGAGAGAGAAGA 60.034 60.000 0.73 0.00 45.00 2.87
4688 5055 1.671901 GCCCGGACAGGAGAGAGAAG 61.672 65.000 0.73 0.00 45.00 2.85
4689 5056 1.682684 GCCCGGACAGGAGAGAGAA 60.683 63.158 0.73 0.00 45.00 2.87
4690 5057 2.043852 GCCCGGACAGGAGAGAGA 60.044 66.667 0.73 0.00 45.00 3.10
4691 5058 1.333636 ATTGCCCGGACAGGAGAGAG 61.334 60.000 0.73 0.00 45.00 3.20
4692 5059 0.032515 TATTGCCCGGACAGGAGAGA 60.033 55.000 0.73 0.00 45.00 3.10
4693 5060 0.390860 CTATTGCCCGGACAGGAGAG 59.609 60.000 0.73 0.00 45.00 3.20
4694 5061 0.325296 ACTATTGCCCGGACAGGAGA 60.325 55.000 0.73 0.00 45.00 3.71
4695 5062 0.179073 CACTATTGCCCGGACAGGAG 60.179 60.000 0.73 0.43 45.00 3.69
4696 5063 1.904771 CACTATTGCCCGGACAGGA 59.095 57.895 0.73 0.00 45.00 3.86
4697 5064 1.819632 GCACTATTGCCCGGACAGG 60.820 63.158 0.73 0.00 43.66 4.00
4698 5065 3.813596 GCACTATTGCCCGGACAG 58.186 61.111 0.73 0.00 43.66 3.51
4707 5074 2.481449 GGACACTACCCGAGCACTATTG 60.481 54.545 0.00 0.00 0.00 1.90
4708 5075 1.755380 GGACACTACCCGAGCACTATT 59.245 52.381 0.00 0.00 0.00 1.73
4709 5076 1.400737 GGACACTACCCGAGCACTAT 58.599 55.000 0.00 0.00 0.00 2.12
4710 5077 2.877975 GGACACTACCCGAGCACTA 58.122 57.895 0.00 0.00 0.00 2.74
4711 5078 3.696084 GGACACTACCCGAGCACT 58.304 61.111 0.00 0.00 0.00 4.40
4717 5084 0.179119 GATTGTCCGGACACTACCCG 60.179 60.000 36.40 0.00 46.10 5.28
4718 5085 1.134788 CAGATTGTCCGGACACTACCC 60.135 57.143 36.40 21.49 41.67 3.69
4719 5086 1.822990 TCAGATTGTCCGGACACTACC 59.177 52.381 36.40 23.15 41.67 3.18
4720 5087 3.448686 CATCAGATTGTCCGGACACTAC 58.551 50.000 36.40 26.87 41.67 2.73
4721 5088 2.159099 GCATCAGATTGTCCGGACACTA 60.159 50.000 36.40 23.74 41.67 2.74
4722 5089 1.406069 GCATCAGATTGTCCGGACACT 60.406 52.381 36.40 30.98 41.67 3.55
4723 5090 1.009829 GCATCAGATTGTCCGGACAC 58.990 55.000 36.40 25.25 41.67 3.67
4724 5091 0.460109 CGCATCAGATTGTCCGGACA 60.460 55.000 33.23 33.23 39.98 4.02
4725 5092 0.179111 TCGCATCAGATTGTCCGGAC 60.179 55.000 28.17 28.17 0.00 4.79
4726 5093 0.179111 GTCGCATCAGATTGTCCGGA 60.179 55.000 0.00 0.00 0.00 5.14
4727 5094 0.460109 TGTCGCATCAGATTGTCCGG 60.460 55.000 0.00 0.00 0.00 5.14
4728 5095 1.575244 ATGTCGCATCAGATTGTCCG 58.425 50.000 0.00 0.00 0.00 4.79
4729 5096 3.496130 CCTAATGTCGCATCAGATTGTCC 59.504 47.826 0.00 0.00 0.00 4.02
4730 5097 3.496130 CCCTAATGTCGCATCAGATTGTC 59.504 47.826 0.00 0.00 0.00 3.18
4731 5098 3.470709 CCCTAATGTCGCATCAGATTGT 58.529 45.455 0.00 0.00 0.00 2.71
4732 5099 2.810274 CCCCTAATGTCGCATCAGATTG 59.190 50.000 0.00 0.00 0.00 2.67
4733 5100 2.224621 CCCCCTAATGTCGCATCAGATT 60.225 50.000 0.00 0.00 0.00 2.40
4734 5101 1.349026 CCCCCTAATGTCGCATCAGAT 59.651 52.381 0.00 0.00 0.00 2.90
4735 5102 0.758734 CCCCCTAATGTCGCATCAGA 59.241 55.000 0.00 0.00 0.00 3.27
4736 5103 0.469917 ACCCCCTAATGTCGCATCAG 59.530 55.000 0.00 0.00 0.00 2.90
4737 5104 0.916086 AACCCCCTAATGTCGCATCA 59.084 50.000 0.00 0.00 0.00 3.07
4738 5105 1.594331 GAACCCCCTAATGTCGCATC 58.406 55.000 0.00 0.00 0.00 3.91
4739 5106 0.182775 GGAACCCCCTAATGTCGCAT 59.817 55.000 0.00 0.00 0.00 4.73
4740 5107 1.202099 TGGAACCCCCTAATGTCGCA 61.202 55.000 0.00 0.00 35.38 5.10
4741 5108 0.034863 TTGGAACCCCCTAATGTCGC 60.035 55.000 0.00 0.00 35.38 5.19
4742 5109 2.687935 CAATTGGAACCCCCTAATGTCG 59.312 50.000 0.00 0.00 35.38 4.35
4743 5110 3.708451 ACAATTGGAACCCCCTAATGTC 58.292 45.455 10.83 0.00 35.38 3.06
4744 5111 3.845109 ACAATTGGAACCCCCTAATGT 57.155 42.857 10.83 0.00 35.38 2.71
4745 5112 5.124036 TCTACAATTGGAACCCCCTAATG 57.876 43.478 10.83 0.00 35.38 1.90
4746 5113 5.195756 ACATCTACAATTGGAACCCCCTAAT 59.804 40.000 10.83 0.00 35.38 1.73
4747 5114 4.542525 ACATCTACAATTGGAACCCCCTAA 59.457 41.667 10.83 0.00 35.38 2.69
4748 5115 4.116113 ACATCTACAATTGGAACCCCCTA 58.884 43.478 10.83 0.00 35.38 3.53
4749 5116 2.926329 ACATCTACAATTGGAACCCCCT 59.074 45.455 10.83 0.00 35.38 4.79
4750 5117 3.382083 ACATCTACAATTGGAACCCCC 57.618 47.619 10.83 0.00 0.00 5.40
4751 5118 4.082245 CACAACATCTACAATTGGAACCCC 60.082 45.833 10.83 0.00 0.00 4.95
4752 5119 4.764823 TCACAACATCTACAATTGGAACCC 59.235 41.667 10.83 0.00 0.00 4.11
4753 5120 5.473504 ACTCACAACATCTACAATTGGAACC 59.526 40.000 10.83 0.00 0.00 3.62
4754 5121 6.373779 CACTCACAACATCTACAATTGGAAC 58.626 40.000 10.83 0.00 0.00 3.62
4755 5122 5.473162 CCACTCACAACATCTACAATTGGAA 59.527 40.000 10.83 0.00 0.00 3.53
4756 5123 5.003160 CCACTCACAACATCTACAATTGGA 58.997 41.667 10.83 0.00 0.00 3.53
4757 5124 4.761739 ACCACTCACAACATCTACAATTGG 59.238 41.667 10.83 0.00 0.00 3.16
4758 5125 5.335113 CCACCACTCACAACATCTACAATTG 60.335 44.000 3.24 3.24 0.00 2.32
4759 5126 4.761739 CCACCACTCACAACATCTACAATT 59.238 41.667 0.00 0.00 0.00 2.32
4760 5127 4.202461 ACCACCACTCACAACATCTACAAT 60.202 41.667 0.00 0.00 0.00 2.71
4761 5128 3.135712 ACCACCACTCACAACATCTACAA 59.864 43.478 0.00 0.00 0.00 2.41
4762 5129 2.703536 ACCACCACTCACAACATCTACA 59.296 45.455 0.00 0.00 0.00 2.74
4763 5130 3.067106 CACCACCACTCACAACATCTAC 58.933 50.000 0.00 0.00 0.00 2.59
4764 5131 2.549992 GCACCACCACTCACAACATCTA 60.550 50.000 0.00 0.00 0.00 1.98
4765 5132 1.815408 GCACCACCACTCACAACATCT 60.815 52.381 0.00 0.00 0.00 2.90
4766 5133 0.593128 GCACCACCACTCACAACATC 59.407 55.000 0.00 0.00 0.00 3.06
4767 5134 0.106769 TGCACCACCACTCACAACAT 60.107 50.000 0.00 0.00 0.00 2.71
4768 5135 0.322906 TTGCACCACCACTCACAACA 60.323 50.000 0.00 0.00 0.00 3.33
4769 5136 0.814457 TTTGCACCACCACTCACAAC 59.186 50.000 0.00 0.00 0.00 3.32
4770 5137 1.550327 TTTTGCACCACCACTCACAA 58.450 45.000 0.00 0.00 0.00 3.33
4771 5138 1.774110 ATTTTGCACCACCACTCACA 58.226 45.000 0.00 0.00 0.00 3.58
4772 5139 2.030274 GGTATTTTGCACCACCACTCAC 60.030 50.000 0.00 0.00 36.01 3.51
4773 5140 2.235016 GGTATTTTGCACCACCACTCA 58.765 47.619 0.00 0.00 36.01 3.41
4774 5141 1.199097 CGGTATTTTGCACCACCACTC 59.801 52.381 0.00 0.00 35.67 3.51
4775 5142 1.243902 CGGTATTTTGCACCACCACT 58.756 50.000 0.00 0.00 35.67 4.00
4776 5143 0.388006 GCGGTATTTTGCACCACCAC 60.388 55.000 0.00 0.00 35.67 4.16
4777 5144 0.538516 AGCGGTATTTTGCACCACCA 60.539 50.000 0.00 0.00 35.67 4.17
4778 5145 1.400494 CTAGCGGTATTTTGCACCACC 59.600 52.381 0.00 0.00 35.67 4.61
4779 5146 2.352388 TCTAGCGGTATTTTGCACCAC 58.648 47.619 0.00 0.00 35.67 4.16
4780 5147 2.772077 TCTAGCGGTATTTTGCACCA 57.228 45.000 0.00 0.00 35.67 4.17
4781 5148 2.548480 GGATCTAGCGGTATTTTGCACC 59.452 50.000 0.00 0.00 0.00 5.01
4782 5149 2.548480 GGGATCTAGCGGTATTTTGCAC 59.452 50.000 0.00 0.00 0.00 4.57
4783 5150 2.438021 AGGGATCTAGCGGTATTTTGCA 59.562 45.455 0.00 0.00 0.00 4.08
4784 5151 3.127425 AGGGATCTAGCGGTATTTTGC 57.873 47.619 0.00 0.00 0.00 3.68
4785 5152 3.815401 CCAAGGGATCTAGCGGTATTTTG 59.185 47.826 0.00 0.00 0.00 2.44
4786 5153 3.458487 ACCAAGGGATCTAGCGGTATTTT 59.542 43.478 0.00 0.00 0.00 1.82
4787 5154 3.046374 ACCAAGGGATCTAGCGGTATTT 58.954 45.455 0.00 0.00 0.00 1.40
4788 5155 2.690840 ACCAAGGGATCTAGCGGTATT 58.309 47.619 0.00 0.00 0.00 1.89
4789 5156 2.400467 ACCAAGGGATCTAGCGGTAT 57.600 50.000 0.00 0.00 0.00 2.73
4790 5157 2.490351 CCTACCAAGGGATCTAGCGGTA 60.490 54.545 0.00 0.00 39.48 4.02
4791 5158 1.705873 CTACCAAGGGATCTAGCGGT 58.294 55.000 0.00 0.00 0.00 5.68
4792 5159 0.969894 CCTACCAAGGGATCTAGCGG 59.030 60.000 0.00 0.00 39.48 5.52
4804 5171 3.074281 CGCTTGGACCCCTACCAA 58.926 61.111 0.00 0.00 43.84 3.67
4805 5172 3.712907 GCGCTTGGACCCCTACCA 61.713 66.667 0.00 0.00 35.47 3.25
4806 5173 3.682292 CTGCGCTTGGACCCCTACC 62.682 68.421 9.73 0.00 0.00 3.18
4807 5174 2.125106 CTGCGCTTGGACCCCTAC 60.125 66.667 9.73 0.00 0.00 3.18
4808 5175 4.096003 GCTGCGCTTGGACCCCTA 62.096 66.667 9.73 0.00 0.00 3.53
4812 5179 4.704833 TCCAGCTGCGCTTGGACC 62.705 66.667 20.03 0.00 36.40 4.46
4813 5180 1.589716 ATTTCCAGCTGCGCTTGGAC 61.590 55.000 22.52 3.48 36.40 4.02
4814 5181 1.303561 ATTTCCAGCTGCGCTTGGA 60.304 52.632 20.03 20.03 36.40 3.53
4815 5182 1.138247 GATTTCCAGCTGCGCTTGG 59.862 57.895 8.66 14.16 36.40 3.61
4816 5183 0.179171 CAGATTTCCAGCTGCGCTTG 60.179 55.000 8.66 4.45 36.40 4.01
4817 5184 1.310933 CCAGATTTCCAGCTGCGCTT 61.311 55.000 8.66 0.00 36.40 4.68
4818 5185 1.748122 CCAGATTTCCAGCTGCGCT 60.748 57.895 8.66 0.00 40.77 5.92
4819 5186 2.768492 CCCAGATTTCCAGCTGCGC 61.768 63.158 8.66 0.00 0.00 6.09
4820 5187 1.078214 TCCCAGATTTCCAGCTGCG 60.078 57.895 8.66 1.56 0.00 5.18
4821 5188 1.034292 GGTCCCAGATTTCCAGCTGC 61.034 60.000 8.66 0.00 0.00 5.25
4822 5189 0.329261 TGGTCCCAGATTTCCAGCTG 59.671 55.000 6.78 6.78 0.00 4.24
4823 5190 0.622665 CTGGTCCCAGATTTCCAGCT 59.377 55.000 7.61 0.00 46.30 4.24
4824 5191 0.620556 TCTGGTCCCAGATTTCCAGC 59.379 55.000 12.01 0.00 46.80 4.85
4833 5200 1.374758 GTGCGAACTCTGGTCCCAG 60.375 63.158 7.02 7.02 44.86 4.45
4834 5201 1.691195 TTGTGCGAACTCTGGTCCCA 61.691 55.000 0.00 0.00 0.00 4.37
4835 5202 0.534203 TTTGTGCGAACTCTGGTCCC 60.534 55.000 0.00 0.00 0.00 4.46
4836 5203 0.868406 CTTTGTGCGAACTCTGGTCC 59.132 55.000 0.00 0.00 0.00 4.46
4837 5204 0.868406 CCTTTGTGCGAACTCTGGTC 59.132 55.000 0.00 0.00 0.00 4.02
4838 5205 0.180406 ACCTTTGTGCGAACTCTGGT 59.820 50.000 0.00 0.00 0.00 4.00
4839 5206 1.308998 AACCTTTGTGCGAACTCTGG 58.691 50.000 0.00 0.00 0.00 3.86
4840 5207 3.420839 AAAACCTTTGTGCGAACTCTG 57.579 42.857 0.00 0.00 0.00 3.35
4841 5208 3.314357 GGTAAAACCTTTGTGCGAACTCT 59.686 43.478 0.00 0.00 34.73 3.24
4842 5209 3.549423 GGGTAAAACCTTTGTGCGAACTC 60.549 47.826 0.00 0.00 38.64 3.01
4843 5210 2.359848 GGGTAAAACCTTTGTGCGAACT 59.640 45.455 0.00 0.00 38.64 3.01
4844 5211 2.099427 TGGGTAAAACCTTTGTGCGAAC 59.901 45.455 0.00 0.00 38.64 3.95
4845 5212 2.376109 TGGGTAAAACCTTTGTGCGAA 58.624 42.857 0.00 0.00 38.64 4.70
4846 5213 2.054232 TGGGTAAAACCTTTGTGCGA 57.946 45.000 0.00 0.00 38.64 5.10
4847 5214 2.100087 ACTTGGGTAAAACCTTTGTGCG 59.900 45.455 0.00 0.00 38.64 5.34
4848 5215 3.812156 ACTTGGGTAAAACCTTTGTGC 57.188 42.857 0.00 0.00 38.64 4.57
4849 5216 4.142337 ACGAACTTGGGTAAAACCTTTGTG 60.142 41.667 0.00 0.00 38.64 3.33
4850 5217 4.018490 ACGAACTTGGGTAAAACCTTTGT 58.982 39.130 0.00 0.00 38.64 2.83
4851 5218 4.356289 CACGAACTTGGGTAAAACCTTTG 58.644 43.478 0.00 0.00 38.64 2.77
4852 5219 3.181484 GCACGAACTTGGGTAAAACCTTT 60.181 43.478 0.00 0.00 38.64 3.11
4853 5220 2.359848 GCACGAACTTGGGTAAAACCTT 59.640 45.455 0.00 0.00 38.64 3.50
4854 5221 1.951602 GCACGAACTTGGGTAAAACCT 59.048 47.619 0.00 0.00 38.64 3.50
4855 5222 1.001048 GGCACGAACTTGGGTAAAACC 60.001 52.381 0.00 0.00 37.60 3.27
4856 5223 1.951602 AGGCACGAACTTGGGTAAAAC 59.048 47.619 0.00 0.00 0.00 2.43
4857 5224 2.158726 AGAGGCACGAACTTGGGTAAAA 60.159 45.455 0.00 0.00 0.00 1.52
4858 5225 1.418637 AGAGGCACGAACTTGGGTAAA 59.581 47.619 0.00 0.00 0.00 2.01
4859 5226 1.053424 AGAGGCACGAACTTGGGTAA 58.947 50.000 0.00 0.00 0.00 2.85
4860 5227 0.320374 CAGAGGCACGAACTTGGGTA 59.680 55.000 0.00 0.00 0.00 3.69
4861 5228 1.071471 CAGAGGCACGAACTTGGGT 59.929 57.895 0.00 0.00 0.00 4.51
4862 5229 1.071471 ACAGAGGCACGAACTTGGG 59.929 57.895 0.00 0.00 0.00 4.12
4863 5230 1.230635 CCACAGAGGCACGAACTTGG 61.231 60.000 0.00 0.00 0.00 3.61
4864 5231 0.249868 TCCACAGAGGCACGAACTTG 60.250 55.000 0.00 0.00 37.29 3.16
4865 5232 0.034059 CTCCACAGAGGCACGAACTT 59.966 55.000 0.00 0.00 36.39 2.66
4866 5233 1.115930 ACTCCACAGAGGCACGAACT 61.116 55.000 0.00 0.00 45.11 3.01
4867 5234 0.601558 TACTCCACAGAGGCACGAAC 59.398 55.000 0.00 0.00 45.11 3.95
4868 5235 1.334160 TTACTCCACAGAGGCACGAA 58.666 50.000 0.00 0.00 45.11 3.85
4869 5236 1.557099 ATTACTCCACAGAGGCACGA 58.443 50.000 0.00 0.00 45.11 4.35
4870 5237 2.481449 GGTATTACTCCACAGAGGCACG 60.481 54.545 0.00 0.00 45.11 5.34
4871 5238 2.158943 GGGTATTACTCCACAGAGGCAC 60.159 54.545 0.00 0.00 45.11 5.01
4872 5239 2.116238 GGGTATTACTCCACAGAGGCA 58.884 52.381 0.00 0.00 45.11 4.75
4873 5240 2.399580 AGGGTATTACTCCACAGAGGC 58.600 52.381 0.00 0.00 45.11 4.70
4874 5241 4.543689 TGTAGGGTATTACTCCACAGAGG 58.456 47.826 0.00 0.00 45.11 3.69
4875 5242 6.334102 GATGTAGGGTATTACTCCACAGAG 57.666 45.833 1.57 0.00 46.36 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.