Multiple sequence alignment - TraesCS7B01G114300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G114300 chr7B 100.000 5016 0 0 1 5016 132172614 132167599 0.000000e+00 9263.0
1 TraesCS7B01G114300 chr7B 83.219 584 83 11 4438 5016 599800474 599799901 5.750000e-144 521.0
2 TraesCS7B01G114300 chr7B 92.126 254 16 4 1 252 367739143 367738892 6.180000e-94 355.0
3 TraesCS7B01G114300 chr7B 90.347 259 22 3 3 259 455228874 455228617 2.240000e-88 337.0
4 TraesCS7B01G114300 chr7D 92.323 1980 91 35 2419 4372 167586530 167584586 0.000000e+00 2758.0
5 TraesCS7B01G114300 chr7D 92.887 1884 62 27 531 2367 167588585 167586727 0.000000e+00 2671.0
6 TraesCS7B01G114300 chr7D 98.008 251 5 0 254 504 167588824 167588574 2.140000e-118 436.0
7 TraesCS7B01G114300 chr7D 100.000 30 0 0 2391 2420 167586723 167586694 7.020000e-04 56.5
8 TraesCS7B01G114300 chr7A 90.098 1828 69 29 531 2308 169401554 169399789 0.000000e+00 2270.0
9 TraesCS7B01G114300 chr7A 89.843 1654 98 39 2692 4291 169399351 169397714 0.000000e+00 2060.0
10 TraesCS7B01G114300 chr7A 91.176 272 8 4 2344 2599 169399793 169399522 6.180000e-94 355.0
11 TraesCS7B01G114300 chr7A 94.931 217 8 1 291 504 169401759 169401543 2.240000e-88 337.0
12 TraesCS7B01G114300 chr5D 86.587 589 53 10 4440 5016 507866454 507867028 1.190000e-175 627.0
13 TraesCS7B01G114300 chr6D 86.713 572 54 6 4445 5016 35001968 35002517 2.570000e-172 616.0
14 TraesCS7B01G114300 chr6D 76.557 610 91 32 4437 5016 465175045 465174458 2.290000e-73 287.0
15 TraesCS7B01G114300 chr1B 86.491 570 62 7 4438 5004 444028455 444029012 3.320000e-171 612.0
16 TraesCS7B01G114300 chr1D 84.854 581 71 8 4438 5016 403201479 403202044 2.030000e-158 569.0
17 TraesCS7B01G114300 chr1D 91.406 256 20 2 3 256 492904231 492903976 2.870000e-92 350.0
18 TraesCS7B01G114300 chr1D 81.132 159 21 4 4858 5016 288931773 288931624 8.820000e-23 119.0
19 TraesCS7B01G114300 chr4D 86.508 504 62 4 4438 4940 432420474 432419976 2.640000e-152 549.0
20 TraesCS7B01G114300 chr4D 86.337 505 59 6 4437 4940 442641156 442641651 4.420000e-150 542.0
21 TraesCS7B01G114300 chr4D 81.935 310 39 8 4720 5015 486082123 486081817 3.880000e-61 246.0
22 TraesCS7B01G114300 chr4D 88.889 63 7 0 4922 4984 133734199 133734261 1.500000e-10 78.7
23 TraesCS7B01G114300 chr3B 84.444 585 60 12 4438 5016 644321701 644321142 9.490000e-152 547.0
24 TraesCS7B01G114300 chr3B 90.310 258 23 2 1 256 239892753 239892496 2.240000e-88 337.0
25 TraesCS7B01G114300 chr5B 83.590 585 63 14 4438 5016 491628331 491628888 7.440000e-143 518.0
26 TraesCS7B01G114300 chr5B 90.588 255 23 1 4 257 548380699 548380445 2.240000e-88 337.0
27 TraesCS7B01G114300 chr5B 83.938 193 13 6 4828 5011 158762391 158762574 8.640000e-38 169.0
28 TraesCS7B01G114300 chr5B 89.333 75 8 0 4937 5011 483048155 483048081 1.490000e-15 95.3
29 TraesCS7B01G114300 chr6B 90.698 258 22 2 1 256 136359569 136359312 4.810000e-90 342.0
30 TraesCS7B01G114300 chr6B 90.698 258 22 2 1 257 638215395 638215651 4.810000e-90 342.0
31 TraesCS7B01G114300 chr2B 91.270 252 20 2 3 252 688467996 688468247 4.810000e-90 342.0
32 TraesCS7B01G114300 chr3A 90.909 253 22 1 3 254 65353155 65353407 6.220000e-89 339.0
33 TraesCS7B01G114300 chr2A 79.381 194 17 5 4824 5016 306110302 306110473 1.140000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G114300 chr7B 132167599 132172614 5015 True 9263.000 9263 100.0000 1 5016 1 chr7B.!!$R1 5015
1 TraesCS7B01G114300 chr7B 599799901 599800474 573 True 521.000 521 83.2190 4438 5016 1 chr7B.!!$R4 578
2 TraesCS7B01G114300 chr7D 167584586 167588824 4238 True 1480.375 2758 95.8045 254 4372 4 chr7D.!!$R1 4118
3 TraesCS7B01G114300 chr7A 169397714 169401759 4045 True 1255.500 2270 91.5120 291 4291 4 chr7A.!!$R1 4000
4 TraesCS7B01G114300 chr5D 507866454 507867028 574 False 627.000 627 86.5870 4440 5016 1 chr5D.!!$F1 576
5 TraesCS7B01G114300 chr6D 35001968 35002517 549 False 616.000 616 86.7130 4445 5016 1 chr6D.!!$F1 571
6 TraesCS7B01G114300 chr6D 465174458 465175045 587 True 287.000 287 76.5570 4437 5016 1 chr6D.!!$R1 579
7 TraesCS7B01G114300 chr1B 444028455 444029012 557 False 612.000 612 86.4910 4438 5004 1 chr1B.!!$F1 566
8 TraesCS7B01G114300 chr1D 403201479 403202044 565 False 569.000 569 84.8540 4438 5016 1 chr1D.!!$F1 578
9 TraesCS7B01G114300 chr3B 644321142 644321701 559 True 547.000 547 84.4440 4438 5016 1 chr3B.!!$R2 578
10 TraesCS7B01G114300 chr5B 491628331 491628888 557 False 518.000 518 83.5900 4438 5016 1 chr5B.!!$F2 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.033366 ATCAAACGCAACTTTGGGCC 59.967 50.0 0.0 0.0 44.05 5.80 F
154 155 0.033781 AAACGGACGGATTTCGGACA 59.966 50.0 0.0 0.0 44.45 4.02 F
937 941 0.042431 ACAGCTCAGAGTCCCCATCT 59.958 55.0 0.0 0.0 0.00 2.90 F
1890 1931 0.176680 CCAGTCCCTTCATGTCCTCG 59.823 60.0 0.0 0.0 0.00 4.63 F
1903 1944 0.247736 GTCCTCGTGCTCTTGGTCAT 59.752 55.0 0.0 0.0 0.00 3.06 F
2965 3345 0.515127 TCAACGCCAGTACGCATTTG 59.485 50.0 0.0 0.0 36.19 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1925 0.247736 ATGACCAAGAGCACGAGGAC 59.752 55.000 0.00 0.00 0.00 3.85 R
1903 1944 1.610038 TGACGAGCAGGACGAGTTAAA 59.390 47.619 0.00 0.00 34.70 1.52 R
2320 2395 0.251916 TGGTACAATGGCGGAAGGAG 59.748 55.000 0.00 0.00 31.92 3.69 R
2965 3345 0.390124 TGACCACAGACCGGTGTTAC 59.610 55.000 14.63 0.00 36.69 2.50 R
3150 3539 1.001641 ATGGGCTGCAGAACCACTC 60.002 57.895 26.65 6.94 37.05 3.51 R
4699 5188 0.105913 AATCGGAGGAGGAGGAGGAC 60.106 60.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.569849 TTGAAGCGTTGGGAGGGA 58.430 55.556 0.00 0.00 0.00 4.20
18 19 1.374947 TTGAAGCGTTGGGAGGGAG 59.625 57.895 0.00 0.00 0.00 4.30
19 20 2.124507 TTGAAGCGTTGGGAGGGAGG 62.125 60.000 0.00 0.00 0.00 4.30
20 21 3.330720 AAGCGTTGGGAGGGAGGG 61.331 66.667 0.00 0.00 0.00 4.30
21 22 3.864983 AAGCGTTGGGAGGGAGGGA 62.865 63.158 0.00 0.00 0.00 4.20
22 23 3.090532 GCGTTGGGAGGGAGGGAT 61.091 66.667 0.00 0.00 0.00 3.85
23 24 2.680370 GCGTTGGGAGGGAGGGATT 61.680 63.158 0.00 0.00 0.00 3.01
24 25 1.224592 CGTTGGGAGGGAGGGATTG 59.775 63.158 0.00 0.00 0.00 2.67
25 26 1.076705 GTTGGGAGGGAGGGATTGC 60.077 63.158 0.00 0.00 0.00 3.56
26 27 1.230281 TTGGGAGGGAGGGATTGCT 60.230 57.895 0.00 0.00 0.00 3.91
27 28 0.045623 TTGGGAGGGAGGGATTGCTA 59.954 55.000 0.00 0.00 0.00 3.49
28 29 0.400525 TGGGAGGGAGGGATTGCTAG 60.401 60.000 0.00 0.00 0.00 3.42
29 30 0.400670 GGGAGGGAGGGATTGCTAGT 60.401 60.000 0.00 0.00 0.00 2.57
30 31 0.761802 GGAGGGAGGGATTGCTAGTG 59.238 60.000 0.00 0.00 0.00 2.74
31 32 1.501582 GAGGGAGGGATTGCTAGTGT 58.498 55.000 0.00 0.00 0.00 3.55
32 33 1.414550 GAGGGAGGGATTGCTAGTGTC 59.585 57.143 0.00 0.00 0.00 3.67
33 34 0.470341 GGGAGGGATTGCTAGTGTCC 59.530 60.000 0.00 0.00 0.00 4.02
34 35 1.501582 GGAGGGATTGCTAGTGTCCT 58.498 55.000 9.17 0.00 32.55 3.85
35 36 1.414550 GGAGGGATTGCTAGTGTCCTC 59.585 57.143 0.00 0.00 39.84 3.71
36 37 1.067821 GAGGGATTGCTAGTGTCCTCG 59.932 57.143 9.17 0.00 32.67 4.63
37 38 1.112113 GGGATTGCTAGTGTCCTCGA 58.888 55.000 9.17 0.00 32.55 4.04
38 39 1.202428 GGGATTGCTAGTGTCCTCGAC 60.202 57.143 9.17 0.00 32.55 4.20
39 40 1.476891 GGATTGCTAGTGTCCTCGACA 59.523 52.381 0.00 0.00 40.50 4.35
40 41 2.480416 GGATTGCTAGTGTCCTCGACAG 60.480 54.545 0.00 0.00 43.57 3.51
41 42 0.888619 TTGCTAGTGTCCTCGACAGG 59.111 55.000 0.00 0.00 43.57 4.00
42 43 1.139947 GCTAGTGTCCTCGACAGGC 59.860 63.158 0.00 0.00 43.57 4.85
43 44 1.429825 CTAGTGTCCTCGACAGGCG 59.570 63.158 0.00 0.00 43.57 5.52
44 45 1.994507 CTAGTGTCCTCGACAGGCGG 61.995 65.000 0.00 0.00 43.57 6.13
45 46 4.436998 GTGTCCTCGACAGGCGGG 62.437 72.222 0.00 0.00 43.57 6.13
46 47 4.988716 TGTCCTCGACAGGCGGGT 62.989 66.667 0.00 0.00 39.40 5.28
47 48 4.131088 GTCCTCGACAGGCGGGTC 62.131 72.222 0.00 2.74 39.40 4.46
48 49 4.671590 TCCTCGACAGGCGGGTCA 62.672 66.667 0.00 0.00 39.40 4.02
49 50 4.436998 CCTCGACAGGCGGGTCAC 62.437 72.222 0.00 0.00 39.40 3.67
100 101 4.364409 GCGCGTCCGTTTCACCAC 62.364 66.667 8.43 0.00 36.67 4.16
101 102 2.962786 CGCGTCCGTTTCACCACA 60.963 61.111 0.00 0.00 0.00 4.17
102 103 2.526993 CGCGTCCGTTTCACCACAA 61.527 57.895 0.00 0.00 0.00 3.33
103 104 1.722677 GCGTCCGTTTCACCACAAA 59.277 52.632 0.00 0.00 0.00 2.83
104 105 0.309612 GCGTCCGTTTCACCACAAAT 59.690 50.000 0.00 0.00 0.00 2.32
105 106 1.662026 GCGTCCGTTTCACCACAAATC 60.662 52.381 0.00 0.00 0.00 2.17
106 107 1.600013 CGTCCGTTTCACCACAAATCA 59.400 47.619 0.00 0.00 0.00 2.57
107 108 2.032302 CGTCCGTTTCACCACAAATCAA 59.968 45.455 0.00 0.00 0.00 2.57
108 109 3.487711 CGTCCGTTTCACCACAAATCAAA 60.488 43.478 0.00 0.00 0.00 2.69
109 110 3.794564 GTCCGTTTCACCACAAATCAAAC 59.205 43.478 0.00 0.00 0.00 2.93
110 111 2.786578 CCGTTTCACCACAAATCAAACG 59.213 45.455 7.99 7.99 45.57 3.60
111 112 2.215363 CGTTTCACCACAAATCAAACGC 59.785 45.455 2.68 0.00 41.80 4.84
112 113 3.182967 GTTTCACCACAAATCAAACGCA 58.817 40.909 0.00 0.00 0.00 5.24
113 114 3.510388 TTCACCACAAATCAAACGCAA 57.490 38.095 0.00 0.00 0.00 4.85
114 115 2.803451 TCACCACAAATCAAACGCAAC 58.197 42.857 0.00 0.00 0.00 4.17
115 116 2.425312 TCACCACAAATCAAACGCAACT 59.575 40.909 0.00 0.00 0.00 3.16
116 117 3.119316 TCACCACAAATCAAACGCAACTT 60.119 39.130 0.00 0.00 0.00 2.66
117 118 3.616379 CACCACAAATCAAACGCAACTTT 59.384 39.130 0.00 0.00 0.00 2.66
118 119 3.616379 ACCACAAATCAAACGCAACTTTG 59.384 39.130 0.00 0.00 33.98 2.77
119 120 3.001127 CCACAAATCAAACGCAACTTTGG 59.999 43.478 0.00 0.00 32.78 3.28
120 121 3.001127 CACAAATCAAACGCAACTTTGGG 59.999 43.478 4.58 4.58 45.49 4.12
121 122 1.864565 AATCAAACGCAACTTTGGGC 58.135 45.000 5.97 0.00 44.05 5.36
122 123 0.033366 ATCAAACGCAACTTTGGGCC 59.967 50.000 0.00 0.00 44.05 5.80
123 124 1.948635 CAAACGCAACTTTGGGCCG 60.949 57.895 0.00 0.00 44.05 6.13
124 125 3.145422 AAACGCAACTTTGGGCCGG 62.145 57.895 0.00 0.00 44.05 6.13
127 128 2.679996 GCAACTTTGGGCCGGGAT 60.680 61.111 2.18 0.00 0.00 3.85
128 129 3.005540 GCAACTTTGGGCCGGGATG 62.006 63.158 2.18 0.00 0.00 3.51
129 130 2.037208 AACTTTGGGCCGGGATGG 59.963 61.111 2.18 0.00 42.50 3.51
130 131 3.600410 AACTTTGGGCCGGGATGGG 62.600 63.158 2.18 0.00 38.63 4.00
131 132 4.060667 CTTTGGGCCGGGATGGGT 62.061 66.667 2.18 0.00 38.63 4.51
132 133 4.055227 TTTGGGCCGGGATGGGTC 62.055 66.667 2.18 0.00 38.63 4.46
136 137 4.104183 GGCCGGGATGGGTCGAAA 62.104 66.667 2.18 0.00 38.63 3.46
137 138 2.045731 GCCGGGATGGGTCGAAAA 60.046 61.111 2.18 0.00 38.63 2.29
138 139 2.404186 GCCGGGATGGGTCGAAAAC 61.404 63.158 2.18 0.00 38.63 2.43
139 140 2.104253 CCGGGATGGGTCGAAAACG 61.104 63.158 0.00 0.00 0.00 3.60
140 141 2.104253 CGGGATGGGTCGAAAACGG 61.104 63.158 0.00 0.00 0.00 4.44
141 142 1.297364 GGGATGGGTCGAAAACGGA 59.703 57.895 0.00 0.00 0.00 4.69
142 143 1.022982 GGGATGGGTCGAAAACGGAC 61.023 60.000 0.00 0.00 0.00 4.79
143 144 1.356527 GGATGGGTCGAAAACGGACG 61.357 60.000 0.00 0.00 35.24 4.79
144 145 1.356527 GATGGGTCGAAAACGGACGG 61.357 60.000 0.00 0.00 35.24 4.79
145 146 1.818959 ATGGGTCGAAAACGGACGGA 61.819 55.000 0.00 0.00 35.24 4.69
146 147 1.079612 GGGTCGAAAACGGACGGAT 60.080 57.895 0.00 0.00 35.24 4.18
147 148 0.671472 GGGTCGAAAACGGACGGATT 60.671 55.000 0.00 0.00 35.24 3.01
148 149 1.150827 GGTCGAAAACGGACGGATTT 58.849 50.000 0.00 0.00 35.24 2.17
149 150 1.127397 GGTCGAAAACGGACGGATTTC 59.873 52.381 12.29 12.29 35.24 2.17
150 151 3.555817 CGAAAACGGACGGATTTCG 57.444 52.632 22.83 22.83 46.08 3.46
151 152 0.094046 CGAAAACGGACGGATTTCGG 59.906 55.000 25.68 14.98 46.94 4.30
152 153 1.431496 GAAAACGGACGGATTTCGGA 58.569 50.000 8.66 0.00 44.45 4.55
153 154 1.127397 GAAAACGGACGGATTTCGGAC 59.873 52.381 8.66 0.00 44.45 4.79
154 155 0.033781 AAACGGACGGATTTCGGACA 59.966 50.000 0.00 0.00 44.45 4.02
155 156 0.248289 AACGGACGGATTTCGGACAT 59.752 50.000 0.00 0.00 44.45 3.06
156 157 0.248289 ACGGACGGATTTCGGACATT 59.752 50.000 0.00 0.00 44.45 2.71
157 158 1.338389 ACGGACGGATTTCGGACATTT 60.338 47.619 0.00 0.00 44.45 2.32
158 159 1.062002 CGGACGGATTTCGGACATTTG 59.938 52.381 0.00 0.00 44.45 2.32
159 160 2.081462 GGACGGATTTCGGACATTTGT 58.919 47.619 0.00 0.00 44.45 2.83
160 161 2.095372 GGACGGATTTCGGACATTTGTC 59.905 50.000 1.99 1.99 44.45 3.18
171 172 3.211803 GACATTTGTCCGTTTAAGGCC 57.788 47.619 0.00 0.00 39.07 5.19
172 173 1.538075 ACATTTGTCCGTTTAAGGCCG 59.462 47.619 0.00 0.00 0.00 6.13
173 174 0.524414 ATTTGTCCGTTTAAGGCCGC 59.476 50.000 0.00 0.00 0.00 6.53
174 175 1.843734 TTTGTCCGTTTAAGGCCGCG 61.844 55.000 0.00 0.00 0.00 6.46
175 176 4.156622 GTCCGTTTAAGGCCGCGC 62.157 66.667 0.00 0.00 0.00 6.86
179 180 4.811761 GTTTAAGGCCGCGCGCTG 62.812 66.667 30.48 24.69 37.74 5.18
193 194 3.330853 GCTGGGTCGCGCTATTCG 61.331 66.667 5.56 0.00 42.12 3.34
194 195 2.104331 CTGGGTCGCGCTATTCGT 59.896 61.111 5.56 0.00 41.07 3.85
195 196 1.944676 CTGGGTCGCGCTATTCGTC 60.945 63.158 5.56 0.00 41.07 4.20
196 197 2.657620 GGGTCGCGCTATTCGTCC 60.658 66.667 5.56 0.00 41.07 4.79
197 198 3.022914 GGTCGCGCTATTCGTCCG 61.023 66.667 5.56 0.00 41.07 4.79
198 199 2.277756 GTCGCGCTATTCGTCCGT 60.278 61.111 5.56 0.00 41.07 4.69
199 200 1.870901 GTCGCGCTATTCGTCCGTT 60.871 57.895 5.56 0.00 41.07 4.44
200 201 1.153978 TCGCGCTATTCGTCCGTTT 60.154 52.632 5.56 0.00 41.07 3.60
201 202 0.733566 TCGCGCTATTCGTCCGTTTT 60.734 50.000 5.56 0.00 41.07 2.43
202 203 0.915904 CGCGCTATTCGTCCGTTTTA 59.084 50.000 5.56 0.00 41.07 1.52
203 204 1.330561 CGCGCTATTCGTCCGTTTTAC 60.331 52.381 5.56 0.00 41.07 2.01
204 205 1.005662 GCGCTATTCGTCCGTTTTACC 60.006 52.381 0.00 0.00 41.07 2.85
205 206 2.533266 CGCTATTCGTCCGTTTTACCT 58.467 47.619 0.00 0.00 0.00 3.08
206 207 2.533129 CGCTATTCGTCCGTTTTACCTC 59.467 50.000 0.00 0.00 0.00 3.85
207 208 3.514645 GCTATTCGTCCGTTTTACCTCA 58.485 45.455 0.00 0.00 0.00 3.86
208 209 3.928375 GCTATTCGTCCGTTTTACCTCAA 59.072 43.478 0.00 0.00 0.00 3.02
209 210 4.389687 GCTATTCGTCCGTTTTACCTCAAA 59.610 41.667 0.00 0.00 0.00 2.69
210 211 4.737353 ATTCGTCCGTTTTACCTCAAAC 57.263 40.909 0.00 0.00 33.90 2.93
217 218 3.322230 GTTTTACCTCAAACGAACGCA 57.678 42.857 0.00 0.00 0.00 5.24
218 219 3.031126 GTTTTACCTCAAACGAACGCAC 58.969 45.455 0.00 0.00 0.00 5.34
219 220 2.228138 TTACCTCAAACGAACGCACT 57.772 45.000 0.00 0.00 0.00 4.40
220 221 1.774639 TACCTCAAACGAACGCACTC 58.225 50.000 0.00 0.00 0.00 3.51
221 222 1.213094 ACCTCAAACGAACGCACTCG 61.213 55.000 3.05 3.05 44.50 4.18
222 223 1.487231 CTCAAACGAACGCACTCGG 59.513 57.895 9.04 0.00 43.22 4.63
223 224 0.937699 CTCAAACGAACGCACTCGGA 60.938 55.000 9.04 0.00 43.22 4.55
224 225 1.200839 CAAACGAACGCACTCGGAC 59.799 57.895 9.04 0.00 43.22 4.79
225 226 1.227031 AAACGAACGCACTCGGACA 60.227 52.632 9.04 0.00 43.22 4.02
226 227 0.806884 AAACGAACGCACTCGGACAA 60.807 50.000 9.04 0.00 43.22 3.18
227 228 0.806884 AACGAACGCACTCGGACAAA 60.807 50.000 9.04 0.00 43.22 2.83
228 229 0.806884 ACGAACGCACTCGGACAAAA 60.807 50.000 9.04 0.00 43.22 2.44
229 230 0.511221 CGAACGCACTCGGACAAAAT 59.489 50.000 0.00 0.00 40.69 1.82
230 231 1.721489 CGAACGCACTCGGACAAAATG 60.721 52.381 0.00 0.00 40.69 2.32
231 232 0.591170 AACGCACTCGGACAAAATGG 59.409 50.000 0.00 0.00 40.69 3.16
232 233 1.234615 ACGCACTCGGACAAAATGGG 61.235 55.000 0.00 0.00 40.69 4.00
233 234 1.883021 GCACTCGGACAAAATGGGG 59.117 57.895 0.00 0.00 0.00 4.96
234 235 0.893727 GCACTCGGACAAAATGGGGT 60.894 55.000 0.00 0.00 0.00 4.95
235 236 1.165270 CACTCGGACAAAATGGGGTC 58.835 55.000 0.00 0.00 0.00 4.46
236 237 0.321298 ACTCGGACAAAATGGGGTCG 60.321 55.000 0.00 0.00 34.87 4.79
237 238 1.644786 CTCGGACAAAATGGGGTCGC 61.645 60.000 0.00 0.00 34.87 5.19
238 239 2.874751 GGACAAAATGGGGTCGCG 59.125 61.111 0.00 0.00 34.87 5.87
239 240 2.178273 GACAAAATGGGGTCGCGC 59.822 61.111 0.00 0.00 0.00 6.86
240 241 3.661025 GACAAAATGGGGTCGCGCG 62.661 63.158 26.76 26.76 0.00 6.86
241 242 4.474846 CAAAATGGGGTCGCGCGG 62.475 66.667 31.69 11.75 0.00 6.46
332 333 2.383527 GCTCACTGCCGTACTGTGC 61.384 63.158 7.54 0.00 45.21 4.57
366 367 8.649973 AAGAAGAACTGAAGTTACAACAGTAG 57.350 34.615 12.76 0.00 42.81 2.57
426 427 5.928656 ACCTATTATAATCCTGCCCCTACT 58.071 41.667 0.00 0.00 0.00 2.57
440 441 2.621407 CCCCTACTACTACCGTCACCAA 60.621 54.545 0.00 0.00 0.00 3.67
534 538 2.119391 TTTTTGCGGGGGAGCCAT 59.881 55.556 0.00 0.00 36.02 4.40
535 539 1.384583 TTTTTGCGGGGGAGCCATA 59.615 52.632 0.00 0.00 36.02 2.74
536 540 0.682855 TTTTTGCGGGGGAGCCATAG 60.683 55.000 0.00 0.00 36.02 2.23
537 541 3.714487 TTTGCGGGGGAGCCATAGC 62.714 63.158 0.00 0.00 40.32 2.97
540 544 3.171388 CGGGGGAGCCATAGCCTT 61.171 66.667 0.00 0.00 41.25 4.35
541 545 2.757124 CGGGGGAGCCATAGCCTTT 61.757 63.158 0.00 0.00 41.25 3.11
621 625 4.323751 GCTCGAATACAAAAGCTTACACG 58.676 43.478 0.00 0.00 0.00 4.49
622 626 4.724036 GCTCGAATACAAAAGCTTACACGG 60.724 45.833 0.00 0.00 0.00 4.94
623 627 4.309099 TCGAATACAAAAGCTTACACGGT 58.691 39.130 0.00 0.00 0.00 4.83
624 628 4.751098 TCGAATACAAAAGCTTACACGGTT 59.249 37.500 0.00 0.00 0.00 4.44
625 629 5.925397 TCGAATACAAAAGCTTACACGGTTA 59.075 36.000 0.00 0.00 0.00 2.85
626 630 6.011277 CGAATACAAAAGCTTACACGGTTAC 58.989 40.000 0.00 0.00 0.00 2.50
627 631 6.346758 CGAATACAAAAGCTTACACGGTTACA 60.347 38.462 0.00 0.00 0.00 2.41
628 632 4.541085 ACAAAAGCTTACACGGTTACAC 57.459 40.909 0.00 0.00 0.00 2.90
638 642 0.248289 ACGGTTACACCATAGCGCTT 59.752 50.000 18.68 0.00 38.47 4.68
657 661 2.361992 CTGCCTGCCAAGCCATCA 60.362 61.111 0.00 0.00 0.00 3.07
738 742 0.543277 GATCCCTCTGACATGCACCA 59.457 55.000 0.00 0.00 0.00 4.17
741 745 1.355381 TCCCTCTGACATGCACCAATT 59.645 47.619 0.00 0.00 0.00 2.32
791 795 8.721479 TCTTTTCATTTCCATCTGATCCTATCT 58.279 33.333 0.00 0.00 0.00 1.98
821 825 2.745884 CGCACGGCCTTCCAATCA 60.746 61.111 0.00 0.00 0.00 2.57
823 827 2.700773 GCACGGCCTTCCAATCACC 61.701 63.158 0.00 0.00 0.00 4.02
937 941 0.042431 ACAGCTCAGAGTCCCCATCT 59.958 55.000 0.00 0.00 0.00 2.90
938 942 0.752054 CAGCTCAGAGTCCCCATCTC 59.248 60.000 0.00 0.00 0.00 2.75
948 955 2.311854 CCCCATCTCCCCAGCTTGT 61.312 63.158 0.00 0.00 0.00 3.16
1432 1455 1.482593 CCGAGAACTATTCACCCTGCT 59.517 52.381 0.00 0.00 0.00 4.24
1433 1456 2.482142 CCGAGAACTATTCACCCTGCTC 60.482 54.545 0.00 0.00 0.00 4.26
1434 1457 2.482142 CGAGAACTATTCACCCTGCTCC 60.482 54.545 0.00 0.00 0.00 4.70
1435 1458 2.769095 GAGAACTATTCACCCTGCTCCT 59.231 50.000 0.00 0.00 0.00 3.69
1436 1459 2.769095 AGAACTATTCACCCTGCTCCTC 59.231 50.000 0.00 0.00 0.00 3.71
1437 1460 1.115467 ACTATTCACCCTGCTCCTCG 58.885 55.000 0.00 0.00 0.00 4.63
1501 1524 1.290009 GAATGCGTTTGCTTGGCCT 59.710 52.632 3.32 0.00 43.34 5.19
1622 1663 3.622060 ATTTCTGGGGGCGACGTGG 62.622 63.158 0.00 0.00 0.00 4.94
1833 1874 2.701780 CGAGACCTCCACGGACCTG 61.702 68.421 0.00 0.00 36.31 4.00
1884 1925 1.379044 GGTGCCCAGTCCCTTCATG 60.379 63.158 0.00 0.00 0.00 3.07
1890 1931 0.176680 CCAGTCCCTTCATGTCCTCG 59.823 60.000 0.00 0.00 0.00 4.63
1891 1932 0.898320 CAGTCCCTTCATGTCCTCGT 59.102 55.000 0.00 0.00 0.00 4.18
1903 1944 0.247736 GTCCTCGTGCTCTTGGTCAT 59.752 55.000 0.00 0.00 0.00 3.06
2076 2120 7.602265 CCAATACCATACATACACATGAATCGA 59.398 37.037 0.00 0.00 35.96 3.59
2078 2122 9.554395 AATACCATACATACACATGAATCGAAA 57.446 29.630 0.00 0.00 35.96 3.46
2080 2124 7.047891 ACCATACATACACATGAATCGAAAGT 58.952 34.615 0.00 0.00 35.96 2.66
2081 2125 7.011389 ACCATACATACACATGAATCGAAAGTG 59.989 37.037 0.00 0.00 35.96 3.16
2097 2141 5.068906 CGAAAGTGCGATGAAATATGATCG 58.931 41.667 0.00 0.00 43.49 3.69
2099 2143 5.582439 AAGTGCGATGAAATATGATCGTC 57.418 39.130 11.54 7.18 42.77 4.20
2147 2197 0.729478 CGTATGAGCGGCGACTATGG 60.729 60.000 12.98 0.00 0.00 2.74
2168 2219 2.697761 GCAGACCGCACGGAGACTA 61.698 63.158 17.40 0.00 41.79 2.59
2218 2269 1.339055 CCGCATCAGGAAGAAGGTGAA 60.339 52.381 0.00 0.00 0.00 3.18
2255 2311 6.998074 TGTAGTCTGATTCATTTGTTCCTGTT 59.002 34.615 0.00 0.00 0.00 3.16
2272 2328 2.482721 CTGTTGAATAGAAAACGGCGGT 59.517 45.455 13.24 0.00 0.00 5.68
2273 2329 2.224549 TGTTGAATAGAAAACGGCGGTG 59.775 45.455 13.24 0.00 0.00 4.94
2318 2393 4.307432 CCACTCACAGTAACATCGAACTT 58.693 43.478 0.00 0.00 0.00 2.66
2320 2395 3.741344 ACTCACAGTAACATCGAACTTGC 59.259 43.478 0.00 0.00 0.00 4.01
2326 2401 4.092091 CAGTAACATCGAACTTGCTCCTTC 59.908 45.833 0.00 0.00 0.00 3.46
2367 2442 3.303351 AGGGCTGCTTGTTTATATGCT 57.697 42.857 0.00 0.00 0.00 3.79
2371 2446 5.835280 AGGGCTGCTTGTTTATATGCTAATT 59.165 36.000 0.00 0.00 0.00 1.40
2386 2461 4.576879 TGCTAATTTTGCATGCCATTCAA 58.423 34.783 16.68 0.00 35.31 2.69
2529 2778 3.758554 CACCACCATTTCTACTTGAAGGG 59.241 47.826 0.00 0.00 37.14 3.95
2542 2791 4.074970 ACTTGAAGGGTGCAAGAATACTG 58.925 43.478 10.00 0.00 44.16 2.74
2557 2812 7.380065 GCAAGAATACTGTCATAGTAGTAGCAC 59.620 40.741 0.00 0.00 44.69 4.40
2569 2824 5.153950 AGTAGTAGCACCTTTCTTGGAAG 57.846 43.478 0.00 0.00 0.00 3.46
2605 2860 3.012518 CTGAATTTGCTCATCCCGTTCT 58.987 45.455 0.00 0.00 0.00 3.01
2610 2865 6.152661 TGAATTTGCTCATCCCGTTCTTATTT 59.847 34.615 0.00 0.00 0.00 1.40
2614 2869 8.740123 TTTGCTCATCCCGTTCTTATTTATAA 57.260 30.769 0.00 0.00 0.00 0.98
2656 2911 3.738982 TGCGAGGAAAAATCAGAGTCAA 58.261 40.909 0.00 0.00 0.00 3.18
2690 2945 7.147312 TCCTTGTGCTTTGACTTTATTGATTG 58.853 34.615 0.00 0.00 0.00 2.67
2739 3117 6.653740 CGTAAAATTTCCTGTTAGAGGGAGTT 59.346 38.462 0.00 0.00 43.06 3.01
2753 3131 5.887754 AGAGGGAGTTTTGGTTTTGCTATA 58.112 37.500 0.00 0.00 0.00 1.31
2840 3219 1.060122 CGAACGTGACGATTTAAGCCC 59.940 52.381 13.70 0.00 0.00 5.19
2888 3268 3.437795 CAGCTGGAAAGCAGCCGG 61.438 66.667 5.57 0.00 46.14 6.13
2958 3338 3.373130 GGTAAATCCTTCAACGCCAGTAC 59.627 47.826 0.00 0.00 0.00 2.73
2965 3345 0.515127 TCAACGCCAGTACGCATTTG 59.485 50.000 0.00 0.00 36.19 2.32
3077 3457 3.495001 GCTCAAGCGGAGGTAAATGATAC 59.505 47.826 9.94 0.00 44.22 2.24
3078 3458 4.058817 CTCAAGCGGAGGTAAATGATACC 58.941 47.826 0.94 0.00 40.13 2.73
3104 3484 8.081633 CACTATTTCCAGTGCTCACATTTTTAA 58.918 33.333 2.63 0.00 39.54 1.52
3166 3555 2.743928 CGAGTGGTTCTGCAGCCC 60.744 66.667 9.47 12.03 0.00 5.19
3189 3578 6.294453 CCCATGCAGTTCTGTAATGTTGTTAA 60.294 38.462 0.00 0.00 0.00 2.01
3190 3579 7.315142 CCATGCAGTTCTGTAATGTTGTTAAT 58.685 34.615 0.00 0.00 0.00 1.40
3191 3580 8.458052 CCATGCAGTTCTGTAATGTTGTTAATA 58.542 33.333 0.00 0.00 0.00 0.98
3192 3581 9.277565 CATGCAGTTCTGTAATGTTGTTAATAC 57.722 33.333 0.00 0.00 0.00 1.89
3193 3582 7.514805 TGCAGTTCTGTAATGTTGTTAATACG 58.485 34.615 1.78 0.00 0.00 3.06
3576 4008 1.376037 GGACCTTGAGCGACCTTGG 60.376 63.158 0.00 0.00 0.00 3.61
3580 4012 0.320374 CCTTGAGCGACCTTGGTACA 59.680 55.000 0.00 0.00 0.00 2.90
3674 4106 1.303888 CTGGTGGGCATCTGCAACT 60.304 57.895 4.33 0.00 44.36 3.16
4117 4571 4.007282 TCGGAGATTTTGAGTACGTACG 57.993 45.455 19.49 15.01 0.00 3.67
4129 4583 5.891451 TGAGTACGTACGACTAGCTAGTAA 58.109 41.667 26.11 12.12 36.50 2.24
4130 4584 5.974158 TGAGTACGTACGACTAGCTAGTAAG 59.026 44.000 26.11 23.04 36.50 2.34
4132 4586 7.028926 AGTACGTACGACTAGCTAGTAAGTA 57.971 40.000 26.11 25.83 36.50 2.24
4135 4589 9.562583 GTACGTACGACTAGCTAGTAAGTATAT 57.437 37.037 29.08 24.07 37.53 0.86
4136 4590 8.459521 ACGTACGACTAGCTAGTAAGTATATG 57.540 38.462 29.08 24.72 36.50 1.78
4137 4591 8.085296 ACGTACGACTAGCTAGTAAGTATATGT 58.915 37.037 29.08 25.11 36.50 2.29
4146 4600 8.190326 AGCTAGTAAGTATATGTGGCATGTTA 57.810 34.615 0.00 0.00 0.00 2.41
4151 4605 3.807622 AGTATATGTGGCATGTTACACGC 59.192 43.478 0.00 0.00 40.39 5.34
4154 4608 0.672091 TGTGGCATGTTACACGCGAT 60.672 50.000 15.93 2.23 40.39 4.58
4181 4635 1.810532 GCTGCTGCCGAGTAGTAGT 59.189 57.895 3.85 0.00 34.54 2.73
4182 4636 1.022735 GCTGCTGCCGAGTAGTAGTA 58.977 55.000 3.85 0.00 34.54 1.82
4183 4637 1.002251 GCTGCTGCCGAGTAGTAGTAG 60.002 57.143 3.85 0.00 34.54 2.57
4202 4656 8.378565 AGTAGTAGTGGACAACTAGTAGTGTAA 58.621 37.037 10.35 0.00 44.28 2.41
4261 4717 2.947652 GGCCGGAGTATTAAAGGGAAAC 59.052 50.000 5.05 0.00 0.00 2.78
4266 4722 5.410067 CGGAGTATTAAAGGGAAACACGTA 58.590 41.667 0.00 0.00 0.00 3.57
4271 4727 4.816786 TTAAAGGGAAACACGTAGTTGC 57.183 40.909 4.51 2.97 41.61 4.17
4281 4741 1.792949 CACGTAGTTGCAGAACACTCC 59.207 52.381 0.00 0.00 41.61 3.85
4297 4757 1.680207 ACTCCGGTTCTAATCTACGGC 59.320 52.381 0.00 0.00 43.93 5.68
4298 4758 1.955080 CTCCGGTTCTAATCTACGGCT 59.045 52.381 0.00 0.00 43.93 5.52
4305 4765 1.757118 TCTAATCTACGGCTTGCAGCT 59.243 47.619 7.85 0.00 41.99 4.24
4311 4771 4.399395 CGGCTTGCAGCTCCCTGA 62.399 66.667 7.85 0.00 41.99 3.86
4312 4772 2.274760 GGCTTGCAGCTCCCTGAT 59.725 61.111 7.85 0.00 41.99 2.90
4314 4774 1.664321 GGCTTGCAGCTCCCTGATTG 61.664 60.000 7.85 0.00 41.99 2.67
4315 4775 0.964358 GCTTGCAGCTCCCTGATTGT 60.964 55.000 0.00 0.00 41.77 2.71
4316 4776 1.679944 GCTTGCAGCTCCCTGATTGTA 60.680 52.381 0.00 0.00 41.77 2.41
4317 4777 2.715046 CTTGCAGCTCCCTGATTGTAA 58.285 47.619 0.00 0.00 41.77 2.41
4318 4778 3.285484 CTTGCAGCTCCCTGATTGTAAT 58.715 45.455 0.00 0.00 41.77 1.89
4320 4780 3.700538 TGCAGCTCCCTGATTGTAATTT 58.299 40.909 0.00 0.00 41.77 1.82
4333 4796 7.040755 CCTGATTGTAATTTGTGTTGACCTGTA 60.041 37.037 0.00 0.00 0.00 2.74
4338 4801 4.911514 ATTTGTGTTGACCTGTACAACC 57.088 40.909 0.00 0.00 44.49 3.77
4347 4810 6.127842 TGTTGACCTGTACAACCTTTTCTTTC 60.128 38.462 0.00 0.00 44.49 2.62
4372 4835 3.778709 GCCGCACGTACGTAATGTTTTAG 60.779 47.826 22.34 6.40 0.00 1.85
4373 4836 3.607641 CCGCACGTACGTAATGTTTTAGA 59.392 43.478 22.34 0.00 0.00 2.10
4374 4837 4.259135 CCGCACGTACGTAATGTTTTAGAG 60.259 45.833 22.34 6.96 0.00 2.43
4375 4838 4.562390 GCACGTACGTAATGTTTTAGAGC 58.438 43.478 22.34 11.72 0.00 4.09
4376 4839 4.090354 GCACGTACGTAATGTTTTAGAGCA 59.910 41.667 22.34 0.00 0.00 4.26
4377 4840 5.220340 GCACGTACGTAATGTTTTAGAGCAT 60.220 40.000 22.34 0.00 0.00 3.79
4378 4841 6.400422 CACGTACGTAATGTTTTAGAGCATC 58.600 40.000 22.34 0.00 0.00 3.91
4389 4852 2.024871 GAGCATCTCCGACGGACG 59.975 66.667 13.88 9.65 42.18 4.79
4421 4884 2.519377 AAAAACCTTTTACAGCGGCC 57.481 45.000 0.00 0.00 0.00 6.13
4422 4885 0.312729 AAAACCTTTTACAGCGGCCG 59.687 50.000 24.05 24.05 0.00 6.13
4423 4886 0.535553 AAACCTTTTACAGCGGCCGA 60.536 50.000 33.48 4.15 0.00 5.54
4424 4887 0.953960 AACCTTTTACAGCGGCCGAG 60.954 55.000 33.48 23.15 0.00 4.63
4425 4888 1.375523 CCTTTTACAGCGGCCGAGT 60.376 57.895 33.48 27.73 0.00 4.18
4426 4889 0.108520 CCTTTTACAGCGGCCGAGTA 60.109 55.000 33.48 26.58 0.00 2.59
4427 4890 1.278238 CTTTTACAGCGGCCGAGTAG 58.722 55.000 33.48 16.32 0.00 2.57
4428 4891 0.738412 TTTTACAGCGGCCGAGTAGC 60.738 55.000 33.48 11.07 0.00 3.58
4466 4929 2.332514 CCGGCGCTTGCAATATGG 59.667 61.111 7.64 0.00 41.71 2.74
4474 4938 4.358851 GCGCTTGCAATATGGTCATTTTA 58.641 39.130 0.00 0.00 38.92 1.52
4481 4946 7.558161 TGCAATATGGTCATTTTAGAGACAG 57.442 36.000 0.00 0.00 36.50 3.51
4559 5039 9.097257 CCAAACAAGTTCATGACATAAAAGTTT 57.903 29.630 0.00 0.00 0.00 2.66
4574 5059 7.330700 ACATAAAAGTTTAAAATCATGCCCACG 59.669 33.333 0.00 0.00 0.00 4.94
4605 5091 6.882656 TCCAACCAAGTTCAAAATCATCAAA 58.117 32.000 0.00 0.00 0.00 2.69
4616 5102 7.410800 TCAAAATCATCAAACAAGTTCATGC 57.589 32.000 0.00 0.00 0.00 4.06
4624 5110 7.599621 TCATCAAACAAGTTCATGCCATAAAAG 59.400 33.333 0.00 0.00 0.00 2.27
4660 5146 1.893801 TGGCACATCAACAATCATGCA 59.106 42.857 0.00 0.00 34.73 3.96
4687 5176 1.540267 TCGTCTTTGTCCTCCTCTTCG 59.460 52.381 0.00 0.00 0.00 3.79
4699 5188 1.400846 TCCTCTTCGTCCGATTCTTCG 59.599 52.381 0.00 0.00 45.08 3.79
4711 5200 1.684450 GATTCTTCGTCCTCCTCCTCC 59.316 57.143 0.00 0.00 0.00 4.30
4724 5213 1.044611 CTCCTCCTCCGATTCTTCCC 58.955 60.000 0.00 0.00 0.00 3.97
4730 5219 1.384082 TCCGATTCTTCCCCCTCCC 60.384 63.158 0.00 0.00 0.00 4.30
4738 5227 1.371774 TCTTCCCCCTCCCCTTCATTA 59.628 52.381 0.00 0.00 0.00 1.90
4766 5258 0.536687 CGCATCATCATGGGGAGCTT 60.537 55.000 0.00 0.00 38.92 3.74
4790 5282 1.637553 AGGTGTTGGCAAGATCTCCAT 59.362 47.619 4.00 0.00 31.54 3.41
4801 5297 1.976404 AGATCTCCATCGGCATCATGT 59.024 47.619 0.00 0.00 33.75 3.21
4832 5331 1.302511 GGCACACCGGAAGACATGT 60.303 57.895 9.46 0.00 0.00 3.21
4868 5367 1.606531 GGAGGTGCTCTCATGCCTT 59.393 57.895 9.26 0.00 44.19 4.35
4869 5368 0.034670 GGAGGTGCTCTCATGCCTTT 60.035 55.000 9.26 0.00 44.19 3.11
4896 5395 1.580942 GCGCAAAACTCATGCCTCA 59.419 52.632 0.30 0.00 40.72 3.86
4926 5452 2.207501 CTGAAGCCACCCATGCCTCT 62.208 60.000 0.00 0.00 0.00 3.69
4969 5495 2.908015 GCTCCGAAGCCACCCATA 59.092 61.111 0.00 0.00 43.10 2.74
4970 5496 1.223487 GCTCCGAAGCCACCCATAA 59.777 57.895 0.00 0.00 43.10 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.374947 CTCCCTCCCAACGCTTCAA 59.625 57.895 0.00 0.00 0.00 2.69
1 2 2.592993 CCTCCCTCCCAACGCTTCA 61.593 63.158 0.00 0.00 0.00 3.02
2 3 2.269241 CCTCCCTCCCAACGCTTC 59.731 66.667 0.00 0.00 0.00 3.86
3 4 3.330720 CCCTCCCTCCCAACGCTT 61.331 66.667 0.00 0.00 0.00 4.68
4 5 3.642741 ATCCCTCCCTCCCAACGCT 62.643 63.158 0.00 0.00 0.00 5.07
5 6 2.680370 AATCCCTCCCTCCCAACGC 61.680 63.158 0.00 0.00 0.00 4.84
6 7 1.224592 CAATCCCTCCCTCCCAACG 59.775 63.158 0.00 0.00 0.00 4.10
7 8 1.076705 GCAATCCCTCCCTCCCAAC 60.077 63.158 0.00 0.00 0.00 3.77
8 9 0.045623 TAGCAATCCCTCCCTCCCAA 59.954 55.000 0.00 0.00 0.00 4.12
9 10 0.400525 CTAGCAATCCCTCCCTCCCA 60.401 60.000 0.00 0.00 0.00 4.37
10 11 0.400670 ACTAGCAATCCCTCCCTCCC 60.401 60.000 0.00 0.00 0.00 4.30
11 12 0.761802 CACTAGCAATCCCTCCCTCC 59.238 60.000 0.00 0.00 0.00 4.30
12 13 1.414550 GACACTAGCAATCCCTCCCTC 59.585 57.143 0.00 0.00 0.00 4.30
13 14 1.501582 GACACTAGCAATCCCTCCCT 58.498 55.000 0.00 0.00 0.00 4.20
14 15 0.470341 GGACACTAGCAATCCCTCCC 59.530 60.000 0.00 0.00 0.00 4.30
15 16 1.414550 GAGGACACTAGCAATCCCTCC 59.585 57.143 0.00 0.00 35.39 4.30
16 17 1.067821 CGAGGACACTAGCAATCCCTC 59.932 57.143 0.00 0.00 37.43 4.30
17 18 1.115467 CGAGGACACTAGCAATCCCT 58.885 55.000 4.32 0.00 32.47 4.20
18 19 1.112113 TCGAGGACACTAGCAATCCC 58.888 55.000 4.32 0.00 32.47 3.85
19 20 1.476891 TGTCGAGGACACTAGCAATCC 59.523 52.381 0.00 0.00 37.67 3.01
20 21 2.480416 CCTGTCGAGGACACTAGCAATC 60.480 54.545 0.00 0.00 42.93 2.67
21 22 1.478510 CCTGTCGAGGACACTAGCAAT 59.521 52.381 0.00 0.00 42.93 3.56
22 23 0.888619 CCTGTCGAGGACACTAGCAA 59.111 55.000 0.00 0.00 42.93 3.91
23 24 1.595993 GCCTGTCGAGGACACTAGCA 61.596 60.000 0.00 0.00 42.93 3.49
24 25 1.139947 GCCTGTCGAGGACACTAGC 59.860 63.158 0.00 0.00 42.93 3.42
25 26 1.429825 CGCCTGTCGAGGACACTAG 59.570 63.158 0.00 0.00 42.93 2.57
26 27 2.044555 CCGCCTGTCGAGGACACTA 61.045 63.158 0.00 0.00 42.93 2.74
27 28 3.374402 CCGCCTGTCGAGGACACT 61.374 66.667 0.00 0.00 42.93 3.55
28 29 4.436998 CCCGCCTGTCGAGGACAC 62.437 72.222 0.00 0.00 42.93 3.67
29 30 4.988716 ACCCGCCTGTCGAGGACA 62.989 66.667 0.00 0.00 42.93 4.02
30 31 4.131088 GACCCGCCTGTCGAGGAC 62.131 72.222 0.00 0.00 42.93 3.85
31 32 4.671590 TGACCCGCCTGTCGAGGA 62.672 66.667 0.00 0.00 42.93 3.71
32 33 4.436998 GTGACCCGCCTGTCGAGG 62.437 72.222 0.00 0.00 43.19 4.63
33 34 4.778415 CGTGACCCGCCTGTCGAG 62.778 72.222 0.00 0.00 41.67 4.04
83 84 4.364409 GTGGTGAAACGGACGCGC 62.364 66.667 5.73 0.00 38.12 6.86
84 85 2.037913 TTTGTGGTGAAACGGACGCG 62.038 55.000 3.53 3.53 38.12 6.01
85 86 0.309612 ATTTGTGGTGAAACGGACGC 59.690 50.000 0.00 0.00 38.12 5.19
86 87 1.600013 TGATTTGTGGTGAAACGGACG 59.400 47.619 0.00 0.00 38.12 4.79
87 88 3.701532 TTGATTTGTGGTGAAACGGAC 57.298 42.857 0.00 0.00 38.12 4.79
88 89 3.487711 CGTTTGATTTGTGGTGAAACGGA 60.488 43.478 0.00 0.00 43.09 4.69
89 90 2.786578 CGTTTGATTTGTGGTGAAACGG 59.213 45.455 0.00 0.00 43.09 4.44
91 92 3.182967 TGCGTTTGATTTGTGGTGAAAC 58.817 40.909 0.00 0.00 0.00 2.78
92 93 3.510388 TGCGTTTGATTTGTGGTGAAA 57.490 38.095 0.00 0.00 0.00 2.69
93 94 3.119316 AGTTGCGTTTGATTTGTGGTGAA 60.119 39.130 0.00 0.00 0.00 3.18
94 95 2.425312 AGTTGCGTTTGATTTGTGGTGA 59.575 40.909 0.00 0.00 0.00 4.02
95 96 2.808244 AGTTGCGTTTGATTTGTGGTG 58.192 42.857 0.00 0.00 0.00 4.17
96 97 3.518634 AAGTTGCGTTTGATTTGTGGT 57.481 38.095 0.00 0.00 0.00 4.16
97 98 3.001127 CCAAAGTTGCGTTTGATTTGTGG 59.999 43.478 7.40 0.00 39.40 4.17
98 99 3.001127 CCCAAAGTTGCGTTTGATTTGTG 59.999 43.478 7.40 0.00 39.40 3.33
99 100 3.194062 CCCAAAGTTGCGTTTGATTTGT 58.806 40.909 7.40 0.00 39.40 2.83
100 101 2.032979 GCCCAAAGTTGCGTTTGATTTG 60.033 45.455 7.40 0.00 39.40 2.32
101 102 2.209273 GCCCAAAGTTGCGTTTGATTT 58.791 42.857 7.40 0.00 39.40 2.17
102 103 1.540146 GGCCCAAAGTTGCGTTTGATT 60.540 47.619 0.00 0.00 39.40 2.57
103 104 0.033366 GGCCCAAAGTTGCGTTTGAT 59.967 50.000 0.00 0.00 39.40 2.57
104 105 1.439644 GGCCCAAAGTTGCGTTTGA 59.560 52.632 0.00 0.00 39.40 2.69
105 106 1.948635 CGGCCCAAAGTTGCGTTTG 60.949 57.895 0.00 0.24 37.20 2.93
106 107 2.415426 CGGCCCAAAGTTGCGTTT 59.585 55.556 0.00 0.00 0.00 3.60
107 108 3.601685 CCGGCCCAAAGTTGCGTT 61.602 61.111 0.00 0.00 0.00 4.84
110 111 2.679996 ATCCCGGCCCAAAGTTGC 60.680 61.111 0.00 0.00 0.00 4.17
111 112 2.350458 CCATCCCGGCCCAAAGTTG 61.350 63.158 0.00 0.00 0.00 3.16
112 113 2.037208 CCATCCCGGCCCAAAGTT 59.963 61.111 0.00 0.00 0.00 2.66
113 114 4.060667 CCCATCCCGGCCCAAAGT 62.061 66.667 0.00 0.00 0.00 2.66
114 115 4.060667 ACCCATCCCGGCCCAAAG 62.061 66.667 0.00 0.00 0.00 2.77
115 116 4.055227 GACCCATCCCGGCCCAAA 62.055 66.667 0.00 0.00 0.00 3.28
119 120 3.631952 TTTTCGACCCATCCCGGCC 62.632 63.158 0.00 0.00 0.00 6.13
120 121 2.045731 TTTTCGACCCATCCCGGC 60.046 61.111 0.00 0.00 0.00 6.13
121 122 3.899395 GTTTTCGACCCATCCCGG 58.101 61.111 0.00 0.00 0.00 5.73
132 133 0.094046 CCGAAATCCGTCCGTTTTCG 59.906 55.000 19.22 19.22 46.80 3.46
133 134 1.127397 GTCCGAAATCCGTCCGTTTTC 59.873 52.381 0.00 3.60 36.31 2.29
134 135 1.150827 GTCCGAAATCCGTCCGTTTT 58.849 50.000 0.00 0.00 36.31 2.43
135 136 0.033781 TGTCCGAAATCCGTCCGTTT 59.966 50.000 0.00 0.00 36.31 3.60
136 137 0.248289 ATGTCCGAAATCCGTCCGTT 59.752 50.000 0.00 0.00 36.31 4.44
137 138 0.248289 AATGTCCGAAATCCGTCCGT 59.752 50.000 0.00 0.00 36.31 4.69
138 139 1.062002 CAAATGTCCGAAATCCGTCCG 59.938 52.381 0.00 0.00 36.31 4.79
139 140 2.081462 ACAAATGTCCGAAATCCGTCC 58.919 47.619 0.00 0.00 36.31 4.79
140 141 3.385079 GACAAATGTCCGAAATCCGTC 57.615 47.619 2.04 0.00 39.07 4.79
151 152 2.413634 CGGCCTTAAACGGACAAATGTC 60.414 50.000 0.00 4.96 44.04 3.06
152 153 1.538075 CGGCCTTAAACGGACAAATGT 59.462 47.619 0.00 0.00 30.13 2.71
153 154 1.731098 GCGGCCTTAAACGGACAAATG 60.731 52.381 0.00 0.00 30.13 2.32
154 155 0.524414 GCGGCCTTAAACGGACAAAT 59.476 50.000 0.00 0.00 30.13 2.32
155 156 1.843734 CGCGGCCTTAAACGGACAAA 61.844 55.000 0.00 0.00 30.13 2.83
156 157 2.319096 CGCGGCCTTAAACGGACAA 61.319 57.895 0.00 0.00 30.13 3.18
157 158 2.739287 CGCGGCCTTAAACGGACA 60.739 61.111 0.00 0.00 30.13 4.02
158 159 4.156622 GCGCGGCCTTAAACGGAC 62.157 66.667 8.83 0.00 0.00 4.79
162 163 4.811761 CAGCGCGCGGCCTTAAAC 62.812 66.667 33.06 12.08 45.17 2.01
176 177 3.330853 CGAATAGCGCGACCCAGC 61.331 66.667 12.10 0.00 0.00 4.85
177 178 1.944676 GACGAATAGCGCGACCCAG 60.945 63.158 12.10 0.00 46.04 4.45
178 179 2.103538 GACGAATAGCGCGACCCA 59.896 61.111 12.10 0.00 46.04 4.51
179 180 2.657620 GGACGAATAGCGCGACCC 60.658 66.667 12.10 0.00 46.04 4.46
180 181 3.022914 CGGACGAATAGCGCGACC 61.023 66.667 12.10 0.00 46.04 4.79
181 182 1.408474 AAACGGACGAATAGCGCGAC 61.408 55.000 12.10 0.04 46.04 5.19
182 183 0.733566 AAAACGGACGAATAGCGCGA 60.734 50.000 12.10 0.00 46.04 5.87
183 184 0.915904 TAAAACGGACGAATAGCGCG 59.084 50.000 0.00 0.00 46.04 6.86
184 185 1.005662 GGTAAAACGGACGAATAGCGC 60.006 52.381 0.00 0.00 46.04 5.92
185 186 8.758605 GTTTGAGGTAAAACGGACGAATAGCG 62.759 46.154 0.00 0.00 36.85 4.26
186 187 3.514645 TGAGGTAAAACGGACGAATAGC 58.485 45.455 0.00 0.00 0.00 2.97
187 188 5.850931 GTTTGAGGTAAAACGGACGAATAG 58.149 41.667 0.00 0.00 30.90 1.73
188 189 5.844301 GTTTGAGGTAAAACGGACGAATA 57.156 39.130 0.00 0.00 30.90 1.75
189 190 4.737353 GTTTGAGGTAAAACGGACGAAT 57.263 40.909 0.00 0.00 30.90 3.34
197 198 3.031126 GTGCGTTCGTTTGAGGTAAAAC 58.969 45.455 0.00 0.00 36.81 2.43
198 199 2.937799 AGTGCGTTCGTTTGAGGTAAAA 59.062 40.909 0.00 0.00 0.00 1.52
199 200 2.540931 GAGTGCGTTCGTTTGAGGTAAA 59.459 45.455 0.00 0.00 0.00 2.01
200 201 2.129607 GAGTGCGTTCGTTTGAGGTAA 58.870 47.619 0.00 0.00 0.00 2.85
201 202 1.774639 GAGTGCGTTCGTTTGAGGTA 58.225 50.000 0.00 0.00 0.00 3.08
202 203 1.213094 CGAGTGCGTTCGTTTGAGGT 61.213 55.000 1.88 0.00 35.91 3.85
203 204 1.487231 CGAGTGCGTTCGTTTGAGG 59.513 57.895 1.88 0.00 35.91 3.86
204 205 0.937699 TCCGAGTGCGTTCGTTTGAG 60.938 55.000 8.56 0.00 38.88 3.02
205 206 1.066093 TCCGAGTGCGTTCGTTTGA 59.934 52.632 8.56 0.00 38.88 2.69
206 207 1.200839 GTCCGAGTGCGTTCGTTTG 59.799 57.895 8.56 0.00 38.88 2.93
207 208 0.806884 TTGTCCGAGTGCGTTCGTTT 60.807 50.000 8.56 0.00 38.88 3.60
208 209 0.806884 TTTGTCCGAGTGCGTTCGTT 60.807 50.000 8.56 0.00 38.88 3.85
209 210 0.806884 TTTTGTCCGAGTGCGTTCGT 60.807 50.000 8.56 0.00 38.88 3.85
210 211 0.511221 ATTTTGTCCGAGTGCGTTCG 59.489 50.000 2.96 2.96 40.18 3.95
211 212 1.399727 CCATTTTGTCCGAGTGCGTTC 60.400 52.381 0.00 0.00 35.23 3.95
212 213 0.591170 CCATTTTGTCCGAGTGCGTT 59.409 50.000 0.00 0.00 35.23 4.84
213 214 1.234615 CCCATTTTGTCCGAGTGCGT 61.235 55.000 0.00 0.00 35.23 5.24
214 215 1.501741 CCCATTTTGTCCGAGTGCG 59.498 57.895 0.00 0.00 37.24 5.34
215 216 0.893727 ACCCCATTTTGTCCGAGTGC 60.894 55.000 0.00 0.00 0.00 4.40
216 217 1.165270 GACCCCATTTTGTCCGAGTG 58.835 55.000 0.00 0.00 0.00 3.51
217 218 0.321298 CGACCCCATTTTGTCCGAGT 60.321 55.000 0.00 0.00 0.00 4.18
218 219 1.644786 GCGACCCCATTTTGTCCGAG 61.645 60.000 0.00 0.00 0.00 4.63
219 220 1.673009 GCGACCCCATTTTGTCCGA 60.673 57.895 0.00 0.00 0.00 4.55
220 221 2.874751 GCGACCCCATTTTGTCCG 59.125 61.111 0.00 0.00 0.00 4.79
221 222 2.874751 CGCGACCCCATTTTGTCC 59.125 61.111 0.00 0.00 0.00 4.02
222 223 2.178273 GCGCGACCCCATTTTGTC 59.822 61.111 12.10 0.00 0.00 3.18
223 224 3.732892 CGCGCGACCCCATTTTGT 61.733 61.111 28.94 0.00 0.00 2.83
224 225 4.474846 CCGCGCGACCCCATTTTG 62.475 66.667 34.63 6.11 0.00 2.44
237 238 1.669760 TAAAGCCAACTCCACCGCG 60.670 57.895 0.00 0.00 0.00 6.46
238 239 0.887387 TGTAAAGCCAACTCCACCGC 60.887 55.000 0.00 0.00 0.00 5.68
239 240 1.156736 CTGTAAAGCCAACTCCACCG 58.843 55.000 0.00 0.00 0.00 4.94
240 241 0.881796 GCTGTAAAGCCAACTCCACC 59.118 55.000 0.00 0.00 0.00 4.61
241 242 1.897560 AGCTGTAAAGCCAACTCCAC 58.102 50.000 0.00 0.00 34.90 4.02
242 243 3.408634 GTTAGCTGTAAAGCCAACTCCA 58.591 45.455 8.76 0.00 34.46 3.86
243 244 2.747989 GGTTAGCTGTAAAGCCAACTCC 59.252 50.000 14.70 0.00 36.80 3.85
244 245 3.437049 CAGGTTAGCTGTAAAGCCAACTC 59.563 47.826 14.70 6.42 36.80 3.01
245 246 3.072476 TCAGGTTAGCTGTAAAGCCAACT 59.928 43.478 14.70 1.53 36.80 3.16
246 247 3.188667 GTCAGGTTAGCTGTAAAGCCAAC 59.811 47.826 11.32 7.60 36.07 3.77
247 248 3.072476 AGTCAGGTTAGCTGTAAAGCCAA 59.928 43.478 11.32 0.00 34.90 4.52
248 249 2.637872 AGTCAGGTTAGCTGTAAAGCCA 59.362 45.455 11.32 0.00 34.90 4.75
249 250 3.336138 AGTCAGGTTAGCTGTAAAGCC 57.664 47.619 11.32 0.00 34.90 4.35
250 251 3.437049 CCAAGTCAGGTTAGCTGTAAAGC 59.563 47.826 11.32 0.00 0.00 3.51
251 252 4.452455 CACCAAGTCAGGTTAGCTGTAAAG 59.548 45.833 11.32 1.32 40.77 1.85
252 253 4.101898 TCACCAAGTCAGGTTAGCTGTAAA 59.898 41.667 11.32 0.00 40.77 2.01
332 333 9.187455 GTAACTTCAGTTCTTCTTTGACTAGAG 57.813 37.037 0.00 0.00 39.31 2.43
366 367 2.834638 TGGTCCTAGGTAGGGTGTAC 57.165 55.000 9.08 0.00 43.79 2.90
426 427 1.602668 GCGTTGTTGGTGACGGTAGTA 60.603 52.381 0.00 0.00 39.52 1.82
517 521 0.682855 CTATGGCTCCCCCGCAAAAA 60.683 55.000 0.00 0.00 35.87 1.94
518 522 1.077068 CTATGGCTCCCCCGCAAAA 60.077 57.895 0.00 0.00 35.87 2.44
519 523 2.595095 CTATGGCTCCCCCGCAAA 59.405 61.111 0.00 0.00 35.87 3.68
520 524 4.189580 GCTATGGCTCCCCCGCAA 62.190 66.667 0.00 0.00 35.87 4.85
523 527 1.415672 TAAAGGCTATGGCTCCCCCG 61.416 60.000 0.00 0.00 37.50 5.73
524 528 0.110678 GTAAAGGCTATGGCTCCCCC 59.889 60.000 0.00 0.00 37.50 5.40
525 529 0.843984 TGTAAAGGCTATGGCTCCCC 59.156 55.000 0.00 0.00 37.50 4.81
526 530 1.490910 AGTGTAAAGGCTATGGCTCCC 59.509 52.381 0.00 0.00 37.50 4.30
527 531 2.565841 CAGTGTAAAGGCTATGGCTCC 58.434 52.381 0.00 0.00 37.50 4.70
528 532 1.943340 GCAGTGTAAAGGCTATGGCTC 59.057 52.381 0.00 0.00 37.50 4.70
529 533 1.408822 GGCAGTGTAAAGGCTATGGCT 60.409 52.381 0.00 0.00 41.24 4.75
530 534 1.025041 GGCAGTGTAAAGGCTATGGC 58.975 55.000 0.00 0.00 37.82 4.40
531 535 1.680338 GGGCAGTGTAAAGGCTATGG 58.320 55.000 0.00 0.00 0.00 2.74
532 536 1.064758 TGGGGCAGTGTAAAGGCTATG 60.065 52.381 0.00 0.00 0.00 2.23
533 537 1.295020 TGGGGCAGTGTAAAGGCTAT 58.705 50.000 0.00 0.00 0.00 2.97
534 538 1.211949 GATGGGGCAGTGTAAAGGCTA 59.788 52.381 0.00 0.00 0.00 3.93
535 539 0.034089 GATGGGGCAGTGTAAAGGCT 60.034 55.000 0.00 0.00 0.00 4.58
536 540 1.037579 GGATGGGGCAGTGTAAAGGC 61.038 60.000 0.00 0.00 0.00 4.35
537 541 0.331278 TGGATGGGGCAGTGTAAAGG 59.669 55.000 0.00 0.00 0.00 3.11
538 542 2.026641 CATGGATGGGGCAGTGTAAAG 58.973 52.381 0.00 0.00 0.00 1.85
539 543 1.341877 CCATGGATGGGGCAGTGTAAA 60.342 52.381 5.56 0.00 44.31 2.01
540 544 0.258484 CCATGGATGGGGCAGTGTAA 59.742 55.000 5.56 0.00 44.31 2.41
541 545 1.922057 CCATGGATGGGGCAGTGTA 59.078 57.895 5.56 0.00 44.31 2.90
622 626 1.933853 CAGGAAGCGCTATGGTGTAAC 59.066 52.381 12.05 0.00 0.00 2.50
623 627 1.742411 GCAGGAAGCGCTATGGTGTAA 60.742 52.381 12.05 0.00 0.00 2.41
624 628 0.179084 GCAGGAAGCGCTATGGTGTA 60.179 55.000 12.05 0.00 0.00 2.90
625 629 1.450312 GCAGGAAGCGCTATGGTGT 60.450 57.895 12.05 0.00 0.00 4.16
626 630 3.414272 GCAGGAAGCGCTATGGTG 58.586 61.111 12.05 7.52 0.00 4.17
703 707 2.290768 GGGATCCATCTGTCCATCCATG 60.291 54.545 15.23 0.00 37.18 3.66
738 742 2.093711 TGATGATCCGGACGTGTCAATT 60.094 45.455 6.12 0.00 0.00 2.32
741 745 1.067060 GATGATGATCCGGACGTGTCA 59.933 52.381 6.12 7.22 0.00 3.58
781 785 5.244851 CGAGAATTGAAGGGAGATAGGATCA 59.755 44.000 0.00 0.00 0.00 2.92
791 795 0.391130 CCGTGCGAGAATTGAAGGGA 60.391 55.000 0.00 0.00 0.00 4.20
821 825 2.947785 ACGAGGAGGAGGAGGGGT 60.948 66.667 0.00 0.00 0.00 4.95
823 827 2.123640 GGACGAGGAGGAGGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
862 866 1.877680 CGTGGTCATGGTGTGTCATGT 60.878 52.381 0.00 0.00 43.52 3.21
922 926 0.762461 GGGGAGATGGGGACTCTGAG 60.762 65.000 2.45 2.45 35.10 3.35
925 929 1.316266 CTGGGGAGATGGGGACTCT 59.684 63.158 0.00 0.00 35.10 3.24
937 941 3.646715 CCGGGAACAAGCTGGGGA 61.647 66.667 0.00 0.00 0.00 4.81
963 970 3.360340 GACGACGAGGACCACCGT 61.360 66.667 11.06 11.06 42.17 4.83
990 1009 3.877450 TGATGCATCGGGGGAGGC 61.877 66.667 21.34 0.00 0.00 4.70
1087 1110 4.556233 TGGCAATAGTATAACTGCGCTAG 58.444 43.478 9.73 7.16 35.60 3.42
1135 1158 1.001406 AGAGAACAAAGGACGAGCCAG 59.999 52.381 0.00 0.00 40.02 4.85
1414 1437 2.769095 AGGAGCAGGGTGAATAGTTCTC 59.231 50.000 0.00 0.00 0.00 2.87
1435 1458 0.596577 CAAGAACAGGTCGAGGACGA 59.403 55.000 0.00 0.00 46.56 4.20
1436 1459 0.388649 CCAAGAACAGGTCGAGGACG 60.389 60.000 0.00 0.00 41.26 4.79
1437 1460 0.966920 TCCAAGAACAGGTCGAGGAC 59.033 55.000 0.00 0.00 31.54 3.85
1501 1524 1.150536 GGGGCCTTCACAGTCACAA 59.849 57.895 0.84 0.00 0.00 3.33
1622 1663 5.382618 AACACAAGATTGAAGAATCTGGC 57.617 39.130 0.00 0.00 46.45 4.85
1854 1895 4.408821 GGCACCATCAGGGCGTGA 62.409 66.667 12.80 12.80 42.05 4.35
1874 1915 0.741221 GCACGAGGACATGAAGGGAC 60.741 60.000 0.00 0.00 0.00 4.46
1884 1925 0.247736 ATGACCAAGAGCACGAGGAC 59.752 55.000 0.00 0.00 0.00 3.85
1890 1931 3.746492 ACGAGTTAAATGACCAAGAGCAC 59.254 43.478 0.00 0.00 0.00 4.40
1891 1932 3.994392 GACGAGTTAAATGACCAAGAGCA 59.006 43.478 0.00 0.00 0.00 4.26
1903 1944 1.610038 TGACGAGCAGGACGAGTTAAA 59.390 47.619 0.00 0.00 34.70 1.52
2076 2120 5.755375 AGACGATCATATTTCATCGCACTTT 59.245 36.000 7.92 0.00 44.74 2.66
2078 2122 4.876125 AGACGATCATATTTCATCGCACT 58.124 39.130 7.92 5.98 44.74 4.40
2080 2124 5.048013 ACCTAGACGATCATATTTCATCGCA 60.048 40.000 7.92 0.00 44.74 5.10
2081 2125 5.403246 ACCTAGACGATCATATTTCATCGC 58.597 41.667 7.92 3.20 44.74 4.58
2097 2141 4.324267 ACAACCACATTTGCTACCTAGAC 58.676 43.478 0.00 0.00 0.00 2.59
2099 2143 7.336931 AGAAATACAACCACATTTGCTACCTAG 59.663 37.037 0.00 0.00 0.00 3.02
2218 2269 4.280789 TCAGACTACATAATGGGAGGGT 57.719 45.455 0.00 0.00 0.00 4.34
2255 2311 2.459060 TCACCGCCGTTTTCTATTCA 57.541 45.000 0.00 0.00 0.00 2.57
2272 2328 2.039746 ACCAAATCCACGGATCACTTCA 59.960 45.455 0.00 0.00 33.08 3.02
2273 2329 2.711542 ACCAAATCCACGGATCACTTC 58.288 47.619 0.00 0.00 33.08 3.01
2318 2393 0.392461 GTACAATGGCGGAAGGAGCA 60.392 55.000 0.00 0.00 36.08 4.26
2320 2395 0.251916 TGGTACAATGGCGGAAGGAG 59.748 55.000 0.00 0.00 31.92 3.69
2367 2442 5.163281 AGGTTGAATGGCATGCAAAATTA 57.837 34.783 22.27 0.00 0.00 1.40
2371 2446 3.514706 ACATAGGTTGAATGGCATGCAAA 59.485 39.130 22.27 7.97 0.00 3.68
2386 2461 3.824443 CCGGAAAAGGAAAACACATAGGT 59.176 43.478 0.00 0.00 0.00 3.08
2529 2778 7.380065 GCTACTACTATGACAGTATTCTTGCAC 59.620 40.741 0.00 0.00 39.06 4.57
2542 2791 6.043411 CCAAGAAAGGTGCTACTACTATGAC 58.957 44.000 0.00 0.00 0.00 3.06
2569 2824 5.279384 CAAATTCAGAATGTGATGCTAGCC 58.721 41.667 13.29 0.00 37.40 3.93
2614 2869 8.044060 TCGCAAAAAGAAAATCTCACTGATAT 57.956 30.769 0.00 0.00 34.45 1.63
2656 2911 2.159179 AAGCACAAGGAAAACTGGGT 57.841 45.000 0.00 0.00 0.00 4.51
2690 2945 7.172703 ACGAGGTTTATTATGCTACAAATAGGC 59.827 37.037 0.00 0.00 0.00 3.93
2784 3162 7.551585 ACCACAAGAACAAATTACATGAAACA 58.448 30.769 0.00 0.00 0.00 2.83
2888 3268 2.031163 AGGTGCGTCAGCTTGGAC 59.969 61.111 5.85 0.00 39.27 4.02
2958 3338 1.136085 CAGACCGGTGTTACAAATGCG 60.136 52.381 14.63 0.00 0.00 4.73
2965 3345 0.390124 TGACCACAGACCGGTGTTAC 59.610 55.000 14.63 0.00 36.69 2.50
2999 3379 2.947652 CTGTGATAAATGCCCAGGTGAG 59.052 50.000 0.00 0.00 0.00 3.51
3077 3457 3.057969 TGTGAGCACTGGAAATAGTGG 57.942 47.619 7.87 0.00 46.32 4.00
3104 3484 2.810274 GGCATGTAGATTGCGTGATGAT 59.190 45.455 0.00 0.00 41.07 2.45
3150 3539 1.001641 ATGGGCTGCAGAACCACTC 60.002 57.895 26.65 6.94 37.05 3.51
3166 3555 9.277565 GTATTAACAACATTACAGAACTGCATG 57.722 33.333 1.46 7.25 33.25 4.06
3189 3578 7.012704 AGCATATCAAATTTGAAGCAGACGTAT 59.987 33.333 29.22 17.56 41.13 3.06
3190 3579 6.316140 AGCATATCAAATTTGAAGCAGACGTA 59.684 34.615 29.22 16.47 41.13 3.57
3191 3580 5.124457 AGCATATCAAATTTGAAGCAGACGT 59.876 36.000 29.22 15.22 41.13 4.34
3192 3581 5.575957 AGCATATCAAATTTGAAGCAGACG 58.424 37.500 29.22 15.92 41.13 4.18
3193 3582 7.256286 AGAAGCATATCAAATTTGAAGCAGAC 58.744 34.615 29.22 22.41 41.13 3.51
3450 3872 2.599597 GGGCTCATCCACATGCCT 59.400 61.111 0.00 0.00 44.36 4.75
3593 4025 2.898729 ACGTGTCATCATCCCAGATC 57.101 50.000 0.00 0.00 0.00 2.75
3659 4091 1.080298 GCAAGTTGCAGATGCCCAC 60.080 57.895 22.90 0.00 44.26 4.61
3674 4106 3.037833 CTGCGACGACTGCTGCAA 61.038 61.111 3.02 0.00 36.82 4.08
3835 4267 1.216444 CTCCAGCGTGCTCAGCTTA 59.784 57.895 0.00 0.00 44.06 3.09
4074 4528 2.093288 AGAATCCAATTCGCAGCTCAGA 60.093 45.455 0.00 0.00 43.92 3.27
4117 4571 7.450124 TGCCACATATACTTACTAGCTAGTC 57.550 40.000 29.28 11.03 37.73 2.59
4129 4583 3.807622 GCGTGTAACATGCCACATATACT 59.192 43.478 10.29 0.00 40.14 2.12
4130 4584 3.362596 CGCGTGTAACATGCCACATATAC 60.363 47.826 0.00 0.00 42.72 1.47
4132 4586 1.597195 CGCGTGTAACATGCCACATAT 59.403 47.619 0.00 0.00 42.72 1.78
4135 4589 0.672091 ATCGCGTGTAACATGCCACA 60.672 50.000 5.77 4.16 42.72 4.17
4136 4590 0.247655 CATCGCGTGTAACATGCCAC 60.248 55.000 5.77 0.00 42.72 5.01
4137 4591 1.976478 GCATCGCGTGTAACATGCCA 61.976 55.000 15.11 0.00 42.72 4.92
4146 4600 2.512286 CCATCCAGCATCGCGTGT 60.512 61.111 5.77 0.00 0.00 4.49
4151 4605 2.203167 AGCAGCCATCCAGCATCG 60.203 61.111 0.00 0.00 34.23 3.84
4181 4635 5.412594 CGGTTACACTACTAGTTGTCCACTA 59.587 44.000 7.02 0.00 36.88 2.74
4182 4636 4.217118 CGGTTACACTACTAGTTGTCCACT 59.783 45.833 7.02 0.00 39.87 4.00
4183 4637 4.022849 ACGGTTACACTACTAGTTGTCCAC 60.023 45.833 7.02 4.61 0.00 4.02
4202 4656 6.282199 AGATAACATCTCACTTGTTACGGT 57.718 37.500 0.00 0.00 41.08 4.83
4261 4717 1.792949 GGAGTGTTCTGCAACTACGTG 59.207 52.381 0.00 0.00 33.17 4.49
4266 4722 0.180406 AACCGGAGTGTTCTGCAACT 59.820 50.000 9.46 0.00 33.17 3.16
4281 4741 1.859080 GCAAGCCGTAGATTAGAACCG 59.141 52.381 0.00 0.00 0.00 4.44
4297 4757 2.408271 TACAATCAGGGAGCTGCAAG 57.592 50.000 7.79 0.00 0.00 4.01
4298 4758 2.877097 TTACAATCAGGGAGCTGCAA 57.123 45.000 7.79 0.00 0.00 4.08
4305 4765 5.242838 GGTCAACACAAATTACAATCAGGGA 59.757 40.000 0.00 0.00 0.00 4.20
4311 4771 7.575414 TGTACAGGTCAACACAAATTACAAT 57.425 32.000 0.00 0.00 0.00 2.71
4312 4772 7.251994 GTTGTACAGGTCAACACAAATTACAA 58.748 34.615 0.00 0.00 42.94 2.41
4314 4774 6.038936 AGGTTGTACAGGTCAACACAAATTAC 59.961 38.462 10.21 0.00 44.53 1.89
4315 4775 6.123651 AGGTTGTACAGGTCAACACAAATTA 58.876 36.000 10.21 0.00 44.53 1.40
4316 4776 4.953579 AGGTTGTACAGGTCAACACAAATT 59.046 37.500 10.21 0.00 44.53 1.82
4317 4777 4.532834 AGGTTGTACAGGTCAACACAAAT 58.467 39.130 10.21 0.00 44.53 2.32
4318 4778 3.958018 AGGTTGTACAGGTCAACACAAA 58.042 40.909 10.21 0.00 44.53 2.83
4320 4780 3.637911 AAGGTTGTACAGGTCAACACA 57.362 42.857 10.21 0.00 44.53 3.72
4333 4796 1.681264 CGGCCAGAAAGAAAAGGTTGT 59.319 47.619 2.24 0.00 0.00 3.32
4338 4801 0.385974 CGTGCGGCCAGAAAGAAAAG 60.386 55.000 2.24 0.00 0.00 2.27
4347 4810 1.517694 ATTACGTACGTGCGGCCAG 60.518 57.895 30.25 2.35 35.98 4.85
4372 4835 2.024871 CGTCCGTCGGAGATGCTC 59.975 66.667 15.95 0.13 43.31 4.26
4402 4865 1.269361 CGGCCGCTGTAAAAGGTTTTT 60.269 47.619 14.67 0.00 0.00 1.94
4403 4866 0.312729 CGGCCGCTGTAAAAGGTTTT 59.687 50.000 14.67 0.00 0.00 2.43
4404 4867 0.535553 TCGGCCGCTGTAAAAGGTTT 60.536 50.000 23.51 0.00 0.00 3.27
4405 4868 0.953960 CTCGGCCGCTGTAAAAGGTT 60.954 55.000 23.51 0.00 0.00 3.50
4406 4869 1.375523 CTCGGCCGCTGTAAAAGGT 60.376 57.895 23.51 0.00 0.00 3.50
4407 4870 0.108520 TACTCGGCCGCTGTAAAAGG 60.109 55.000 23.51 3.98 0.00 3.11
4408 4871 1.278238 CTACTCGGCCGCTGTAAAAG 58.722 55.000 23.51 13.67 0.00 2.27
4409 4872 0.738412 GCTACTCGGCCGCTGTAAAA 60.738 55.000 23.51 6.10 0.00 1.52
4410 4873 1.153706 GCTACTCGGCCGCTGTAAA 60.154 57.895 23.51 6.83 0.00 2.01
4411 4874 2.493030 GCTACTCGGCCGCTGTAA 59.507 61.111 23.51 0.55 0.00 2.41
4412 4875 3.524606 GGCTACTCGGCCGCTGTA 61.525 66.667 23.51 23.05 42.82 2.74
4419 4882 0.109735 GCAAAAACTGGCTACTCGGC 60.110 55.000 0.00 0.00 38.97 5.54
4420 4883 0.165944 CGCAAAAACTGGCTACTCGG 59.834 55.000 0.00 0.00 0.00 4.63
4421 4884 0.452784 GCGCAAAAACTGGCTACTCG 60.453 55.000 0.30 0.00 0.00 4.18
4422 4885 0.452784 CGCGCAAAAACTGGCTACTC 60.453 55.000 8.75 0.00 0.00 2.59
4423 4886 1.574428 CGCGCAAAAACTGGCTACT 59.426 52.632 8.75 0.00 0.00 2.57
4424 4887 2.080636 GCGCGCAAAAACTGGCTAC 61.081 57.895 29.10 0.00 0.00 3.58
4425 4888 2.254051 GCGCGCAAAAACTGGCTA 59.746 55.556 29.10 0.00 0.00 3.93
4426 4889 4.980903 CGCGCGCAAAAACTGGCT 62.981 61.111 32.61 0.00 0.00 4.75
4427 4890 4.973360 TCGCGCGCAAAAACTGGC 62.973 61.111 32.61 0.00 0.00 4.85
4428 4891 2.796617 CTCGCGCGCAAAAACTGG 60.797 61.111 32.61 12.21 0.00 4.00
4429 4892 3.452668 GCTCGCGCGCAAAAACTG 61.453 61.111 32.61 13.04 0.00 3.16
4430 4893 3.862063 CTGCTCGCGCGCAAAAACT 62.862 57.895 32.61 0.00 39.80 2.66
4431 4894 3.452668 CTGCTCGCGCGCAAAAAC 61.453 61.111 32.61 15.40 39.80 2.43
4517 4985 9.727859 AACTTGTTTGGGTGTTTTTAAACTATT 57.272 25.926 6.87 0.00 39.59 1.73
4529 4997 3.360867 TGTCATGAACTTGTTTGGGTGT 58.639 40.909 0.00 0.00 0.00 4.16
4559 5039 3.615155 TGATGACGTGGGCATGATTTTA 58.385 40.909 0.00 0.00 0.00 1.52
4574 5059 5.452078 TTTGAACTTGGTTGGATGATGAC 57.548 39.130 0.00 0.00 0.00 3.06
4605 5091 5.304101 TGAACCTTTTATGGCATGAACTTGT 59.696 36.000 10.98 2.58 0.00 3.16
4616 5102 8.934825 CCATTTATTTGTGTGAACCTTTTATGG 58.065 33.333 0.00 0.00 0.00 2.74
4624 5110 4.626042 TGTGCCATTTATTTGTGTGAACC 58.374 39.130 0.00 0.00 0.00 3.62
4660 5146 2.432510 GGAGGACAAAGACGAGGATGAT 59.567 50.000 0.00 0.00 0.00 2.45
4699 5188 0.105913 AATCGGAGGAGGAGGAGGAC 60.106 60.000 0.00 0.00 0.00 3.85
4711 5200 1.411651 GGGAGGGGGAAGAATCGGAG 61.412 65.000 0.00 0.00 0.00 4.63
4724 5213 1.543429 GCGACATAATGAAGGGGAGGG 60.543 57.143 0.00 0.00 0.00 4.30
4730 5219 1.564622 CGGCGCGACATAATGAAGG 59.435 57.895 14.85 0.00 0.00 3.46
4738 5227 3.341043 GATGATGCGGCGCGACAT 61.341 61.111 31.66 31.66 32.14 3.06
4766 5258 1.425066 AGATCTTGCCAACACCTTCCA 59.575 47.619 0.00 0.00 0.00 3.53
4790 5282 2.170397 ACATACCTTCACATGATGCCGA 59.830 45.455 0.00 0.00 0.00 5.54
4801 5297 2.472695 GTGTGCCTCACATACCTTCA 57.527 50.000 2.80 0.00 46.32 3.02
4832 5331 2.889606 CGGGTGACATGGGTGGACA 61.890 63.158 0.00 0.00 0.00 4.02
4868 5367 1.806542 GAGTTTTGCGCCTCTCATGAA 59.193 47.619 4.18 0.00 0.00 2.57
4869 5368 1.270785 TGAGTTTTGCGCCTCTCATGA 60.271 47.619 4.18 0.00 32.95 3.07
4878 5377 0.171903 ATGAGGCATGAGTTTTGCGC 59.828 50.000 0.00 0.00 41.07 6.09
4941 5467 2.978452 CTTCGGAGCTACCATGGGCG 62.978 65.000 18.09 7.47 38.90 6.13
4942 5468 1.227674 CTTCGGAGCTACCATGGGC 60.228 63.158 18.09 11.01 38.90 5.36
4943 5469 1.227674 GCTTCGGAGCTACCATGGG 60.228 63.158 18.09 0.00 45.65 4.00
4944 5470 4.445699 GCTTCGGAGCTACCATGG 57.554 61.111 8.97 11.19 45.65 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.