Multiple sequence alignment - TraesCS7B01G113100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G113100 chr7B 100.000 3353 0 0 1 3353 130817862 130814510 0.000000e+00 6192.0
1 TraesCS7B01G113100 chr7B 84.611 1657 199 32 719 2359 3504167 3505783 0.000000e+00 1596.0
2 TraesCS7B01G113100 chr7B 92.388 289 19 1 134 419 666635617 666635329 3.110000e-110 409.0
3 TraesCS7B01G113100 chr7A 94.821 2761 131 7 423 3176 167945853 167943098 0.000000e+00 4296.0
4 TraesCS7B01G113100 chr7A 85.645 1651 197 26 720 2359 65543322 65544943 0.000000e+00 1700.0
5 TraesCS7B01G113100 chr7A 84.221 526 76 5 1651 2175 65151325 65151844 3.860000e-139 505.0
6 TraesCS7B01G113100 chr7A 84.878 205 27 2 138 338 696327015 696326811 1.580000e-48 204.0
7 TraesCS7B01G113100 chr7A 90.566 53 3 1 325 377 696300950 696300900 6.000000e-08 69.4
8 TraesCS7B01G113100 chr7A 97.368 38 1 0 2101 2138 65151843 65151880 7.770000e-07 65.8
9 TraesCS7B01G113100 chr7D 95.518 1138 49 2 1364 2501 166820346 166819211 0.000000e+00 1818.0
10 TraesCS7B01G113100 chr7D 85.150 1596 195 28 775 2359 61187172 61188736 0.000000e+00 1596.0
11 TraesCS7B01G113100 chr7D 83.210 1084 142 26 775 1847 61179640 61180694 0.000000e+00 957.0
12 TraesCS7B01G113100 chr7D 88.710 434 36 4 932 1364 166875582 166875161 4.960000e-143 518.0
13 TraesCS7B01G113100 chr7D 79.641 167 16 7 3189 3352 37115361 37115210 1.650000e-18 104.0
14 TraesCS7B01G113100 chr2B 92.123 292 19 2 134 422 27622785 27623075 3.110000e-110 409.0
15 TraesCS7B01G113100 chr2B 90.847 295 21 2 134 422 27625038 27625332 1.130000e-104 390.0
16 TraesCS7B01G113100 chr2B 91.791 134 10 1 1 134 27622612 27622744 5.710000e-43 185.0
17 TraesCS7B01G113100 chr2B 85.635 181 11 4 3174 3351 742811107 742810939 3.440000e-40 176.0
18 TraesCS7B01G113100 chr2B 89.313 131 14 0 1 131 27624864 27624994 7.440000e-37 165.0
19 TraesCS7B01G113100 chr2B 83.152 184 13 5 3173 3352 509578016 509578185 5.790000e-33 152.0
20 TraesCS7B01G113100 chr6D 73.206 627 154 13 1718 2337 429018150 429018769 7.290000e-52 215.0
21 TraesCS7B01G113100 chr6D 83.721 215 28 5 216 425 17102514 17102302 2.640000e-46 196.0
22 TraesCS7B01G113100 chr6D 86.131 137 16 3 1 136 17104015 17103881 9.700000e-31 145.0
23 TraesCS7B01G113100 chr5B 86.885 183 14 7 3174 3352 583903290 583903114 2.640000e-46 196.0
24 TraesCS7B01G113100 chr5A 80.576 278 33 7 154 423 491213472 491213736 9.490000e-46 195.0
25 TraesCS7B01G113100 chr3B 86.339 183 12 7 3174 3352 25124089 25123916 1.590000e-43 187.0
26 TraesCS7B01G113100 chr3B 84.324 185 13 6 3171 3352 614193895 614194066 2.070000e-37 167.0
27 TraesCS7B01G113100 chr2D 84.615 182 12 5 3174 3352 619871316 619871484 2.070000e-37 167.0
28 TraesCS7B01G113100 chr6B 84.066 182 13 5 3174 3352 226138632 226138800 9.630000e-36 161.0
29 TraesCS7B01G113100 chr4B 83.696 184 17 7 3174 3353 25842118 25842292 9.630000e-36 161.0
30 TraesCS7B01G113100 chr3A 83.243 185 13 7 3172 3352 545907483 545907313 1.610000e-33 154.0
31 TraesCS7B01G113100 chr3A 82.222 180 16 6 3175 3352 25232889 25232724 1.250000e-29 141.0
32 TraesCS7B01G113100 chr6A 84.337 166 12 7 3189 3352 10502429 10502276 2.080000e-32 150.0
33 TraesCS7B01G113100 chr2A 80.435 184 19 10 3173 3352 20238881 20239051 1.260000e-24 124.0
34 TraesCS7B01G113100 chr4D 84.483 116 18 0 19 134 333451842 333451727 7.600000e-22 115.0
35 TraesCS7B01G113100 chr1A 94.231 52 3 0 3301 3352 282703309 282703360 2.770000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G113100 chr7B 130814510 130817862 3352 True 6192.00 6192 100.0000 1 3353 1 chr7B.!!$R1 3352
1 TraesCS7B01G113100 chr7B 3504167 3505783 1616 False 1596.00 1596 84.6110 719 2359 1 chr7B.!!$F1 1640
2 TraesCS7B01G113100 chr7A 167943098 167945853 2755 True 4296.00 4296 94.8210 423 3176 1 chr7A.!!$R1 2753
3 TraesCS7B01G113100 chr7A 65543322 65544943 1621 False 1700.00 1700 85.6450 720 2359 1 chr7A.!!$F1 1639
4 TraesCS7B01G113100 chr7A 65151325 65151880 555 False 285.40 505 90.7945 1651 2175 2 chr7A.!!$F2 524
5 TraesCS7B01G113100 chr7D 166819211 166820346 1135 True 1818.00 1818 95.5180 1364 2501 1 chr7D.!!$R2 1137
6 TraesCS7B01G113100 chr7D 61187172 61188736 1564 False 1596.00 1596 85.1500 775 2359 1 chr7D.!!$F2 1584
7 TraesCS7B01G113100 chr7D 61179640 61180694 1054 False 957.00 957 83.2100 775 1847 1 chr7D.!!$F1 1072
8 TraesCS7B01G113100 chr2B 27622612 27625332 2720 False 287.25 409 91.0185 1 422 4 chr2B.!!$F2 421
9 TraesCS7B01G113100 chr6D 429018150 429018769 619 False 215.00 215 73.2060 1718 2337 1 chr6D.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 414 0.260230 TAGCCAGGCTAGACTCAGCT 59.740 55.0 18.06 20.73 41.50 4.24 F
1143 1206 0.921347 CGCGCACTGTATACCTTGTC 59.079 55.0 8.75 0.00 0.00 3.18 F
2201 3797 0.035439 GAGGCCAAGGGTCGAATGAA 60.035 55.0 5.01 0.00 29.39 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 1287 0.099259 TGTCGTTGTCGTTGTCGTCT 59.901 50.0 0.0 0.0 38.33 4.18 R
2289 3885 0.309922 CTTGCCATGCCTTATCAGCG 59.690 55.0 0.0 0.0 0.00 5.18 R
3189 4791 0.107410 TGCAAACCGTGAGAACTGGT 60.107 50.0 0.0 0.0 37.68 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.379044 CTGCCTCAACCCCACCATC 60.379 63.158 0.00 0.00 0.00 3.51
70 71 4.271816 CCGGTCCGAGCTCCATCG 62.272 72.222 14.39 7.08 42.36 3.84
73 74 2.413765 GTCCGAGCTCCATCGTCC 59.586 66.667 8.47 0.00 41.12 4.79
77 78 2.543802 CGAGCTCCATCGTCCGCTA 61.544 63.158 8.47 0.00 37.91 4.26
78 79 1.008309 GAGCTCCATCGTCCGCTAC 60.008 63.158 0.87 0.00 31.96 3.58
136 178 2.421314 GTGTGTTTTGCAGGGGCC 59.579 61.111 0.00 0.00 40.13 5.80
165 207 4.155733 CGGTAGCGTCATGGGGCA 62.156 66.667 6.07 0.00 0.00 5.36
168 210 1.682451 GGTAGCGTCATGGGGCACTA 61.682 60.000 10.76 0.00 0.00 2.74
190 232 2.092968 GTGGTGCAGGTTCAGATGGATA 60.093 50.000 0.00 0.00 0.00 2.59
193 235 3.370953 GGTGCAGGTTCAGATGGATAACT 60.371 47.826 0.00 0.00 0.00 2.24
206 248 2.084546 GGATAACTGGTTGGTGTCTGC 58.915 52.381 0.00 0.00 0.00 4.26
210 252 0.546122 ACTGGTTGGTGTCTGCTTGA 59.454 50.000 0.00 0.00 0.00 3.02
231 273 1.438651 CTGAAAGAATTCCGTCGCCA 58.561 50.000 0.65 0.00 34.07 5.69
240 282 3.554692 CCGTCGCCATCGTGCTTC 61.555 66.667 0.00 0.00 36.96 3.86
256 298 2.025981 TGCTTCTGGGAAGTATGTGCAT 60.026 45.455 8.73 0.00 0.00 3.96
269 311 9.056005 GGAAGTATGTGCATATTTCTCATACAA 57.944 33.333 19.57 0.00 40.52 2.41
271 313 8.383318 AGTATGTGCATATTTCTCATACAACC 57.617 34.615 18.20 0.00 40.52 3.77
286 331 5.468746 TCATACAACCTAGCAAACAACTCAC 59.531 40.000 0.00 0.00 0.00 3.51
316 361 1.453155 CCCAGAGTATGCACACAACC 58.547 55.000 0.00 0.00 0.00 3.77
369 414 0.260230 TAGCCAGGCTAGACTCAGCT 59.740 55.000 18.06 20.73 41.50 4.24
374 419 2.660572 CAGGCTAGACTCAGCTAGGAA 58.339 52.381 0.00 0.00 41.50 3.36
383 428 2.144730 CTCAGCTAGGAAGATGCATGC 58.855 52.381 11.82 11.82 39.05 4.06
437 482 2.981875 CGCCCATAATTTTGAGCGTAC 58.018 47.619 14.83 0.00 38.81 3.67
445 490 9.607285 CCCATAATTTTGAGCGTACATATTAAC 57.393 33.333 0.00 0.00 0.00 2.01
567 612 6.764560 GGGTTTACTAATTCTTAGCCGATCAA 59.235 38.462 0.00 0.00 36.71 2.57
569 614 8.283291 GGTTTACTAATTCTTAGCCGATCAATG 58.717 37.037 0.00 0.00 36.71 2.82
580 625 7.606456 TCTTAGCCGATCAATGTTTTCTTAAGT 59.394 33.333 1.63 0.00 0.00 2.24
581 626 8.780846 TTAGCCGATCAATGTTTTCTTAAGTA 57.219 30.769 1.63 0.00 0.00 2.24
582 627 7.681939 AGCCGATCAATGTTTTCTTAAGTAA 57.318 32.000 1.63 0.00 0.00 2.24
583 628 7.752695 AGCCGATCAATGTTTTCTTAAGTAAG 58.247 34.615 1.63 0.00 34.65 2.34
594 639 9.970395 TGTTTTCTTAAGTAAGTATCAGTCGAA 57.030 29.630 1.63 0.00 34.93 3.71
689 734 7.654520 ACAACTATGTGATAAAGTGTACGTTGT 59.345 33.333 0.00 0.00 38.69 3.32
790 837 2.726633 CCTTTGTGGTTAAACAGTGCG 58.273 47.619 0.00 0.00 0.00 5.34
972 1027 6.370593 TGAAGACGTTCACAATTTTCATAGC 58.629 36.000 0.00 0.00 37.79 2.97
1004 1059 4.386951 CACGACCACCGCCATGGA 62.387 66.667 18.40 0.00 43.02 3.41
1012 1067 2.224159 ACCGCCATGGAACTGGTCT 61.224 57.895 18.40 0.00 42.00 3.85
1025 1080 4.158209 GGAACTGGTCTTCCTAGTAGACAC 59.842 50.000 18.58 11.39 43.00 3.67
1088 1148 4.458708 CTCTTCTTACTTTTTCTGTGCGC 58.541 43.478 0.00 0.00 0.00 6.09
1131 1194 2.357034 ATGAACCGTTCGCGCACT 60.357 55.556 8.75 0.00 39.70 4.40
1143 1206 0.921347 CGCGCACTGTATACCTTGTC 59.079 55.000 8.75 0.00 0.00 3.18
1159 1222 2.689553 TGTCGATTATGCCTGCTTCA 57.310 45.000 0.00 0.00 0.00 3.02
1160 1223 2.984562 TGTCGATTATGCCTGCTTCAA 58.015 42.857 0.00 0.00 0.00 2.69
1170 1233 1.466856 CCTGCTTCAAGCCTAATGCA 58.533 50.000 7.01 0.00 44.83 3.96
1217 1280 4.074259 TGGATTGAGAACATTCACCACTG 58.926 43.478 0.00 0.00 0.00 3.66
1224 1287 1.302431 CATTCACCACTGCCGGTCA 60.302 57.895 1.90 0.00 37.07 4.02
1228 1291 3.991051 ACCACTGCCGGTCAGACG 61.991 66.667 26.07 18.28 45.72 4.18
1259 1322 1.391485 CGACAACCATCGCTTCTTGAG 59.609 52.381 0.00 0.00 34.90 3.02
1290 1353 0.106149 AACGGTCAGGACTTGGTGAC 59.894 55.000 0.00 0.00 42.06 3.67
1296 1359 0.387367 CAGGACTTGGTGACGAGACG 60.387 60.000 0.00 0.00 45.46 4.18
1298 1361 0.663568 GGACTTGGTGACGAGACGTG 60.664 60.000 0.00 0.00 45.46 4.49
1329 1393 1.416013 CCCCACCACTATATCCCACCT 60.416 57.143 0.00 0.00 0.00 4.00
1425 1489 4.712476 AGACATCTATCAACCTTGATGCC 58.288 43.478 10.28 0.00 46.68 4.40
1599 2588 2.435059 GACCTCTTGCAGACCGCC 60.435 66.667 0.00 0.00 41.33 6.13
1603 2592 3.997064 CTCTTGCAGACCGCCTCCG 62.997 68.421 0.00 0.00 41.33 4.63
1878 2900 2.280592 AACCTTGTGGACGTCGCC 60.281 61.111 9.92 2.64 37.04 5.54
2201 3797 0.035439 GAGGCCAAGGGTCGAATGAA 60.035 55.000 5.01 0.00 29.39 2.57
2289 3885 0.668401 GCATCCAGCCAGCAAACAAC 60.668 55.000 0.00 0.00 37.23 3.32
2649 4245 2.514205 AAAATTTGCTCAACTGCGCT 57.486 40.000 9.73 0.00 35.36 5.92
2658 4254 9.599866 AATTTGCTCAACTGCGCTATATATATA 57.400 29.630 9.73 2.49 35.36 0.86
2764 4363 7.665559 AGAATACCAAGTCAATAGTTTGCTTCA 59.334 33.333 0.00 0.00 31.33 3.02
2793 4392 3.041211 TCCTCCCATATGTCCTTGACTG 58.959 50.000 1.24 0.00 33.15 3.51
2817 4416 1.315981 TGCACGCCACCAGTGAAAAA 61.316 50.000 0.00 0.00 41.83 1.94
2894 4495 8.291740 TGCATCATCTTTCATTTAATCCATACG 58.708 33.333 0.00 0.00 0.00 3.06
2902 4503 9.650371 CTTTCATTTAATCCATACGTACATGTG 57.350 33.333 9.11 0.00 0.00 3.21
2907 4509 9.997482 ATTTAATCCATACGTACATGTGTTTTC 57.003 29.630 9.11 0.00 0.00 2.29
2908 4510 6.431198 AATCCATACGTACATGTGTTTTCC 57.569 37.500 9.11 0.00 0.00 3.13
2931 4533 7.552459 TCCGATTCAGTATCAGTTCAATGTTA 58.448 34.615 0.00 0.00 32.45 2.41
2959 4561 7.655521 ATCATCAATCTGGAAATGAACACAT 57.344 32.000 0.00 0.00 32.31 3.21
2970 4572 6.658391 TGGAAATGAACACATACATCATGTCA 59.342 34.615 0.00 0.00 44.99 3.58
2992 4594 5.301551 TCACATCTTGTATTGTTGTTTGCCT 59.698 36.000 0.00 0.00 0.00 4.75
2993 4595 5.403166 CACATCTTGTATTGTTGTTTGCCTG 59.597 40.000 0.00 0.00 0.00 4.85
2999 4601 0.453793 TTGTTGTTTGCCTGTCACGG 59.546 50.000 0.00 0.00 0.00 4.94
3057 4659 1.891919 GCAGTGCCGGTGTTTCTCA 60.892 57.895 2.85 0.00 0.00 3.27
3166 4768 2.129555 GAAGGGGAGCACTGCCAGAA 62.130 60.000 10.58 0.00 43.56 3.02
3169 4771 1.228245 GGGAGCACTGCCAGAAACA 60.228 57.895 0.00 0.00 41.16 2.83
3173 4775 0.963962 AGCACTGCCAGAAACAATGG 59.036 50.000 0.00 0.00 41.04 3.16
3176 4778 1.962807 CACTGCCAGAAACAATGGGAA 59.037 47.619 0.00 0.00 37.74 3.97
3177 4779 2.364970 CACTGCCAGAAACAATGGGAAA 59.635 45.455 0.00 0.00 37.74 3.13
3178 4780 3.037549 ACTGCCAGAAACAATGGGAAAA 58.962 40.909 0.00 0.00 37.74 2.29
3179 4781 3.454082 ACTGCCAGAAACAATGGGAAAAA 59.546 39.130 0.00 0.00 37.74 1.94
3202 4804 7.553881 AAAATTATATGACCAGTTCTCACGG 57.446 36.000 0.00 0.00 0.00 4.94
3203 4805 5.871396 ATTATATGACCAGTTCTCACGGT 57.129 39.130 0.00 0.00 33.96 4.83
3204 4806 5.670792 TTATATGACCAGTTCTCACGGTT 57.329 39.130 0.00 0.00 32.17 4.44
3205 4807 2.930826 ATGACCAGTTCTCACGGTTT 57.069 45.000 0.00 0.00 32.17 3.27
3206 4808 1.948104 TGACCAGTTCTCACGGTTTG 58.052 50.000 0.00 0.00 32.17 2.93
3207 4809 0.586802 GACCAGTTCTCACGGTTTGC 59.413 55.000 0.00 0.00 32.17 3.68
3208 4810 0.107410 ACCAGTTCTCACGGTTTGCA 60.107 50.000 0.00 0.00 0.00 4.08
3209 4811 0.588252 CCAGTTCTCACGGTTTGCAG 59.412 55.000 0.00 0.00 0.00 4.41
3210 4812 0.588252 CAGTTCTCACGGTTTGCAGG 59.412 55.000 0.00 0.00 0.00 4.85
3211 4813 0.180406 AGTTCTCACGGTTTGCAGGT 59.820 50.000 0.00 0.00 0.00 4.00
3212 4814 0.307760 GTTCTCACGGTTTGCAGGTG 59.692 55.000 0.00 0.00 0.00 4.00
3213 4815 0.179234 TTCTCACGGTTTGCAGGTGA 59.821 50.000 10.28 10.28 38.29 4.02
3214 4816 4.454948 TCACGGTTTGCAGGTGAG 57.545 55.556 7.58 0.00 35.89 3.51
3215 4817 1.826709 TCACGGTTTGCAGGTGAGA 59.173 52.632 7.58 0.00 35.89 3.27
3216 4818 0.531974 TCACGGTTTGCAGGTGAGAC 60.532 55.000 7.58 0.00 35.89 3.36
3217 4819 1.227853 ACGGTTTGCAGGTGAGACC 60.228 57.895 0.00 0.00 38.99 3.85
3218 4820 1.966451 CGGTTTGCAGGTGAGACCC 60.966 63.158 0.00 0.00 39.75 4.46
3219 4821 1.966451 GGTTTGCAGGTGAGACCCG 60.966 63.158 0.00 0.00 39.75 5.28
3220 4822 1.227853 GTTTGCAGGTGAGACCCGT 60.228 57.895 0.00 0.00 39.75 5.28
3221 4823 1.070786 TTTGCAGGTGAGACCCGTC 59.929 57.895 0.00 0.00 39.75 4.79
3222 4824 1.407656 TTTGCAGGTGAGACCCGTCT 61.408 55.000 0.00 0.00 39.75 4.18
3223 4825 1.407656 TTGCAGGTGAGACCCGTCTT 61.408 55.000 0.00 0.00 39.75 3.01
3224 4826 1.374758 GCAGGTGAGACCCGTCTTG 60.375 63.158 0.00 0.00 39.75 3.02
3225 4827 1.816863 GCAGGTGAGACCCGTCTTGA 61.817 60.000 0.00 0.00 39.75 3.02
3226 4828 0.898320 CAGGTGAGACCCGTCTTGAT 59.102 55.000 0.00 0.00 39.75 2.57
3227 4829 0.898320 AGGTGAGACCCGTCTTGATG 59.102 55.000 0.00 0.00 39.75 3.07
3228 4830 0.108138 GGTGAGACCCGTCTTGATGG 60.108 60.000 0.00 2.00 40.61 3.51
3229 4831 0.895530 GTGAGACCCGTCTTGATGGA 59.104 55.000 10.25 0.00 40.61 3.41
3230 4832 1.482593 GTGAGACCCGTCTTGATGGAT 59.517 52.381 10.25 0.00 40.61 3.41
3231 4833 1.482182 TGAGACCCGTCTTGATGGATG 59.518 52.381 10.25 0.00 40.61 3.51
3232 4834 1.757118 GAGACCCGTCTTGATGGATGA 59.243 52.381 10.25 0.00 40.61 2.92
3233 4835 1.482593 AGACCCGTCTTGATGGATGAC 59.517 52.381 10.25 0.00 36.31 3.06
3234 4836 1.207089 GACCCGTCTTGATGGATGACA 59.793 52.381 10.25 0.00 0.00 3.58
3235 4837 1.839994 ACCCGTCTTGATGGATGACAT 59.160 47.619 10.25 0.00 44.18 3.06
3236 4838 2.216046 CCCGTCTTGATGGATGACATG 58.784 52.381 10.25 0.00 40.72 3.21
3237 4839 2.420547 CCCGTCTTGATGGATGACATGT 60.421 50.000 10.25 0.00 40.72 3.21
3238 4840 2.610833 CCGTCTTGATGGATGACATGTG 59.389 50.000 1.15 0.00 40.72 3.21
3239 4841 2.610833 CGTCTTGATGGATGACATGTGG 59.389 50.000 1.15 0.00 40.72 4.17
3240 4842 2.357009 GTCTTGATGGATGACATGTGGC 59.643 50.000 1.15 0.00 40.72 5.01
3241 4843 2.026075 TCTTGATGGATGACATGTGGCA 60.026 45.455 1.15 0.00 40.72 4.92
3243 4845 3.021177 TGATGGATGACATGTGGCATT 57.979 42.857 1.15 0.00 45.42 3.56
3244 4846 2.953648 TGATGGATGACATGTGGCATTC 59.046 45.455 1.15 1.06 45.42 2.67
3245 4847 2.510928 TGGATGACATGTGGCATTCA 57.489 45.000 1.15 5.70 46.54 2.57
3246 4848 2.093890 TGGATGACATGTGGCATTCAC 58.906 47.619 1.15 0.00 43.95 3.18
3257 4859 4.977741 GTGGCATTCACAAATCACAAAG 57.022 40.909 0.00 0.00 45.39 2.77
3258 4860 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
3259 4861 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
3260 4862 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
3261 4863 5.170021 GGCATTCACAAATCACAAAGCATA 58.830 37.500 0.00 0.00 0.00 3.14
3262 4864 5.813672 GGCATTCACAAATCACAAAGCATAT 59.186 36.000 0.00 0.00 0.00 1.78
3263 4865 6.979817 GGCATTCACAAATCACAAAGCATATA 59.020 34.615 0.00 0.00 0.00 0.86
3264 4866 7.043192 GGCATTCACAAATCACAAAGCATATAC 60.043 37.037 0.00 0.00 0.00 1.47
3265 4867 7.703621 GCATTCACAAATCACAAAGCATATACT 59.296 33.333 0.00 0.00 0.00 2.12
3266 4868 9.229784 CATTCACAAATCACAAAGCATATACTC 57.770 33.333 0.00 0.00 0.00 2.59
3267 4869 7.320443 TCACAAATCACAAAGCATATACTCC 57.680 36.000 0.00 0.00 0.00 3.85
3268 4870 6.883756 TCACAAATCACAAAGCATATACTCCA 59.116 34.615 0.00 0.00 0.00 3.86
3269 4871 7.557358 TCACAAATCACAAAGCATATACTCCAT 59.443 33.333 0.00 0.00 0.00 3.41
3270 4872 7.859377 CACAAATCACAAAGCATATACTCCATC 59.141 37.037 0.00 0.00 0.00 3.51
3271 4873 7.013655 ACAAATCACAAAGCATATACTCCATCC 59.986 37.037 0.00 0.00 0.00 3.51
3272 4874 4.973168 TCACAAAGCATATACTCCATCCC 58.027 43.478 0.00 0.00 0.00 3.85
3273 4875 4.074970 CACAAAGCATATACTCCATCCCC 58.925 47.826 0.00 0.00 0.00 4.81
3274 4876 3.721575 ACAAAGCATATACTCCATCCCCA 59.278 43.478 0.00 0.00 0.00 4.96
3275 4877 4.074970 CAAAGCATATACTCCATCCCCAC 58.925 47.826 0.00 0.00 0.00 4.61
3276 4878 2.269940 AGCATATACTCCATCCCCACC 58.730 52.381 0.00 0.00 0.00 4.61
3277 4879 2.157942 AGCATATACTCCATCCCCACCT 60.158 50.000 0.00 0.00 0.00 4.00
3278 4880 2.026822 GCATATACTCCATCCCCACCTG 60.027 54.545 0.00 0.00 0.00 4.00
3279 4881 3.520696 CATATACTCCATCCCCACCTGA 58.479 50.000 0.00 0.00 0.00 3.86
3280 4882 2.587060 ATACTCCATCCCCACCTGAA 57.413 50.000 0.00 0.00 0.00 3.02
3281 4883 2.352561 TACTCCATCCCCACCTGAAA 57.647 50.000 0.00 0.00 0.00 2.69
3282 4884 1.686236 ACTCCATCCCCACCTGAAAT 58.314 50.000 0.00 0.00 0.00 2.17
3283 4885 1.566231 ACTCCATCCCCACCTGAAATC 59.434 52.381 0.00 0.00 0.00 2.17
3284 4886 1.565759 CTCCATCCCCACCTGAAATCA 59.434 52.381 0.00 0.00 0.00 2.57
3285 4887 1.565759 TCCATCCCCACCTGAAATCAG 59.434 52.381 3.37 3.37 43.40 2.90
3294 4896 3.911719 CTGAAATCAGGGGGAAGGG 57.088 57.895 2.38 0.00 40.20 3.95
3295 4897 0.259938 CTGAAATCAGGGGGAAGGGG 59.740 60.000 2.38 0.00 40.20 4.79
3296 4898 1.221213 TGAAATCAGGGGGAAGGGGG 61.221 60.000 0.00 0.00 0.00 5.40
3313 4915 2.191981 GGGGGTGGAGGAAGATTAGA 57.808 55.000 0.00 0.00 0.00 2.10
3314 4916 2.707554 GGGGGTGGAGGAAGATTAGAT 58.292 52.381 0.00 0.00 0.00 1.98
3315 4917 2.373502 GGGGGTGGAGGAAGATTAGATG 59.626 54.545 0.00 0.00 0.00 2.90
3316 4918 2.224646 GGGGTGGAGGAAGATTAGATGC 60.225 54.545 0.00 0.00 0.00 3.91
3317 4919 2.708325 GGGTGGAGGAAGATTAGATGCT 59.292 50.000 0.00 0.00 0.00 3.79
3318 4920 3.137360 GGGTGGAGGAAGATTAGATGCTT 59.863 47.826 0.00 0.00 0.00 3.91
3319 4921 4.385754 GGGTGGAGGAAGATTAGATGCTTT 60.386 45.833 0.00 0.00 0.00 3.51
3320 4922 4.578105 GGTGGAGGAAGATTAGATGCTTTG 59.422 45.833 0.00 0.00 0.00 2.77
3321 4923 5.189180 GTGGAGGAAGATTAGATGCTTTGT 58.811 41.667 0.00 0.00 0.00 2.83
3322 4924 5.065731 GTGGAGGAAGATTAGATGCTTTGTG 59.934 44.000 0.00 0.00 0.00 3.33
3323 4925 5.045651 TGGAGGAAGATTAGATGCTTTGTGA 60.046 40.000 0.00 0.00 0.00 3.58
3324 4926 6.060788 GGAGGAAGATTAGATGCTTTGTGAT 58.939 40.000 0.00 0.00 0.00 3.06
3325 4927 6.545298 GGAGGAAGATTAGATGCTTTGTGATT 59.455 38.462 0.00 0.00 0.00 2.57
3326 4928 7.067981 GGAGGAAGATTAGATGCTTTGTGATTT 59.932 37.037 0.00 0.00 0.00 2.17
3327 4929 7.769220 AGGAAGATTAGATGCTTTGTGATTTG 58.231 34.615 0.00 0.00 0.00 2.32
3328 4930 6.474751 GGAAGATTAGATGCTTTGTGATTTGC 59.525 38.462 0.00 0.00 0.00 3.68
3329 4931 5.575957 AGATTAGATGCTTTGTGATTTGCG 58.424 37.500 0.00 0.00 0.00 4.85
3330 4932 5.355071 AGATTAGATGCTTTGTGATTTGCGA 59.645 36.000 0.00 0.00 0.00 5.10
3331 4933 3.921119 AGATGCTTTGTGATTTGCGAA 57.079 38.095 0.00 0.00 0.00 4.70
3332 4934 4.445452 AGATGCTTTGTGATTTGCGAAT 57.555 36.364 0.00 0.00 0.00 3.34
3333 4935 4.171005 AGATGCTTTGTGATTTGCGAATG 58.829 39.130 3.20 0.00 0.00 2.67
3334 4936 2.060284 TGCTTTGTGATTTGCGAATGC 58.940 42.857 3.20 0.59 43.20 3.56
3335 4937 1.391144 GCTTTGTGATTTGCGAATGCC 59.609 47.619 3.20 0.00 41.78 4.40
3336 4938 2.674954 CTTTGTGATTTGCGAATGCCA 58.325 42.857 3.20 0.00 41.78 4.92
3337 4939 2.063156 TTGTGATTTGCGAATGCCAC 57.937 45.000 3.20 7.66 41.78 5.01
3338 4940 0.109827 TGTGATTTGCGAATGCCACG 60.110 50.000 3.20 0.00 41.78 4.94
3339 4941 0.109781 GTGATTTGCGAATGCCACGT 60.110 50.000 3.20 0.00 41.78 4.49
3340 4942 0.109827 TGATTTGCGAATGCCACGTG 60.110 50.000 9.08 9.08 41.78 4.49
3341 4943 0.109781 GATTTGCGAATGCCACGTGT 60.110 50.000 15.65 0.00 41.78 4.49
3342 4944 0.109781 ATTTGCGAATGCCACGTGTC 60.110 50.000 15.65 0.98 41.78 3.67
3343 4945 1.440145 TTTGCGAATGCCACGTGTCA 61.440 50.000 15.65 8.63 41.78 3.58
3344 4946 1.233950 TTGCGAATGCCACGTGTCAT 61.234 50.000 15.65 11.07 41.78 3.06
3345 4947 1.233950 TGCGAATGCCACGTGTCATT 61.234 50.000 23.51 23.51 41.78 2.57
3346 4948 0.521242 GCGAATGCCACGTGTCATTC 60.521 55.000 32.08 32.08 42.95 2.67
3347 4949 0.795698 CGAATGCCACGTGTCATTCA 59.204 50.000 36.83 18.90 45.27 2.57
3348 4950 1.398041 CGAATGCCACGTGTCATTCAT 59.602 47.619 36.83 15.80 45.27 2.57
3349 4951 2.537529 CGAATGCCACGTGTCATTCATC 60.538 50.000 36.83 21.17 45.27 2.92
3350 4952 2.112380 ATGCCACGTGTCATTCATCA 57.888 45.000 15.65 0.00 0.00 3.07
3351 4953 1.441738 TGCCACGTGTCATTCATCAG 58.558 50.000 15.65 0.00 0.00 2.90
3352 4954 1.001860 TGCCACGTGTCATTCATCAGA 59.998 47.619 15.65 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.450312 GGGTTGAGGCAGACGATGG 60.450 63.158 0.00 0.00 0.00 3.51
10 11 1.918293 TGGGGTTGAGGCAGACGAT 60.918 57.895 0.00 0.00 0.00 3.73
11 12 2.525629 TGGGGTTGAGGCAGACGA 60.526 61.111 0.00 0.00 0.00 4.20
12 13 2.358737 GTGGGGTTGAGGCAGACG 60.359 66.667 0.00 0.00 0.00 4.18
13 14 2.034221 GGTGGGGTTGAGGCAGAC 59.966 66.667 0.00 0.00 0.00 3.51
14 15 1.852157 ATGGTGGGGTTGAGGCAGA 60.852 57.895 0.00 0.00 0.00 4.26
16 17 1.852157 AGATGGTGGGGTTGAGGCA 60.852 57.895 0.00 0.00 0.00 4.75
33 34 1.206849 GTGGAGAAAGAGGGAGCTCAG 59.793 57.143 17.19 0.00 0.00 3.35
151 193 0.686441 ACTAGTGCCCCATGACGCTA 60.686 55.000 0.00 0.00 0.00 4.26
165 207 1.717032 TCTGAACCTGCACCACTAGT 58.283 50.000 0.00 0.00 0.00 2.57
168 210 0.037303 CCATCTGAACCTGCACCACT 59.963 55.000 0.00 0.00 0.00 4.00
190 232 1.064758 TCAAGCAGACACCAACCAGTT 60.065 47.619 0.00 0.00 0.00 3.16
193 235 3.094386 GTCAAGCAGACACCAACCA 57.906 52.632 4.63 0.00 46.77 3.67
206 248 3.123621 CGACGGAATTCTTTCAGGTCAAG 59.876 47.826 5.23 0.00 36.99 3.02
210 252 1.439679 GCGACGGAATTCTTTCAGGT 58.560 50.000 5.23 0.00 32.09 4.00
231 273 2.501723 ACATACTTCCCAGAAGCACGAT 59.498 45.455 4.28 0.00 0.00 3.73
240 282 6.057533 TGAGAAATATGCACATACTTCCCAG 58.942 40.000 7.92 0.00 31.84 4.45
256 298 8.726988 GTTGTTTGCTAGGTTGTATGAGAAATA 58.273 33.333 0.00 0.00 0.00 1.40
269 311 2.614829 ACGTGAGTTGTTTGCTAGGT 57.385 45.000 0.00 0.00 46.40 3.08
345 390 1.068434 GAGTCTAGCCTGGCTAAGCTG 59.932 57.143 27.16 16.48 40.82 4.24
383 428 1.371022 ATAGTCTCGCGCTGCATCG 60.371 57.895 5.56 5.40 0.00 3.84
393 438 3.459232 TTGGATCCTTGCATAGTCTCG 57.541 47.619 14.23 0.00 0.00 4.04
581 626 7.965107 GCATTTTTCAGAATTCGACTGATACTT 59.035 33.333 5.18 0.00 42.68 2.24
582 627 7.119699 TGCATTTTTCAGAATTCGACTGATACT 59.880 33.333 5.18 0.00 42.68 2.12
583 628 7.243487 TGCATTTTTCAGAATTCGACTGATAC 58.757 34.615 5.18 0.00 42.68 2.24
594 639 9.199982 CTACACTGAATTTGCATTTTTCAGAAT 57.800 29.630 27.18 19.83 45.88 2.40
654 699 4.772886 ATCACATAGTTGTACTTCCCCC 57.227 45.455 0.00 0.00 33.76 5.40
657 702 8.773404 ACACTTTATCACATAGTTGTACTTCC 57.227 34.615 0.00 0.00 33.76 3.46
663 708 7.654520 ACAACGTACACTTTATCACATAGTTGT 59.345 33.333 0.00 0.00 41.27 3.32
689 734 9.685276 ATGTCTCAATCCACATTATGAAAAGTA 57.315 29.630 0.00 0.00 28.27 2.24
990 1045 2.040544 CAGTTCCATGGCGGTGGTC 61.041 63.158 6.96 4.32 40.27 4.02
1004 1059 5.000570 AGTGTCTACTAGGAAGACCAGTT 57.999 43.478 19.26 5.31 42.24 3.16
1012 1067 9.702253 AATGAGAAATAGAGTGTCTACTAGGAA 57.298 33.333 0.00 0.00 37.25 3.36
1025 1080 8.618702 AGTATCATGCCAAATGAGAAATAGAG 57.381 34.615 0.00 0.00 0.00 2.43
1099 1159 3.738281 CGGTTCATGAGGTACAGGATGAC 60.738 52.174 0.00 0.00 39.06 3.06
1131 1194 5.538118 CAGGCATAATCGACAAGGTATACA 58.462 41.667 5.01 0.00 0.00 2.29
1143 1206 1.002033 GGCTTGAAGCAGGCATAATCG 60.002 52.381 19.89 0.00 44.75 3.34
1159 1222 0.887933 CGGTGGTTTGCATTAGGCTT 59.112 50.000 0.00 0.00 45.15 4.35
1160 1223 1.595093 GCGGTGGTTTGCATTAGGCT 61.595 55.000 0.00 0.00 45.15 4.58
1170 1233 1.526575 CCTTGCTGATGCGGTGGTTT 61.527 55.000 0.00 0.00 43.34 3.27
1217 1280 3.103911 CGTTGTCGTCTGACCGGC 61.104 66.667 0.00 0.00 44.86 6.13
1224 1287 0.099259 TGTCGTTGTCGTTGTCGTCT 59.901 50.000 0.00 0.00 38.33 4.18
1228 1291 1.000884 TGGTTGTCGTTGTCGTTGTC 58.999 50.000 0.00 0.00 38.33 3.18
1281 1344 1.299926 GCACGTCTCGTCACCAAGT 60.300 57.895 0.00 0.00 38.32 3.16
1329 1393 5.354792 ACGGGCTTCGCTTAAACAATAATAA 59.645 36.000 0.29 0.00 43.89 1.40
1425 1489 3.065510 AGTTCACGACGAGTATGGAGATG 59.934 47.826 0.00 0.00 0.00 2.90
1832 2854 4.402616 AAATTGAGACCAAGATTCCCCA 57.597 40.909 0.00 0.00 35.48 4.96
2201 3797 1.489560 CCAAACTCGGTCCCCCTTCT 61.490 60.000 0.00 0.00 0.00 2.85
2289 3885 0.309922 CTTGCCATGCCTTATCAGCG 59.690 55.000 0.00 0.00 0.00 5.18
2502 4098 1.826385 CAAATTCTTGGAGACGGCCT 58.174 50.000 0.00 0.00 0.00 5.19
2525 4121 0.975887 ATTTGCATTTTGCCTCGGGT 59.024 45.000 0.00 0.00 44.23 5.28
2744 4343 5.183713 TGGATGAAGCAAACTATTGACTTGG 59.816 40.000 0.00 0.00 38.94 3.61
2764 4363 5.617888 AGGACATATGGGAGGAATATGGAT 58.382 41.667 7.80 0.00 40.72 3.41
2793 4392 2.026014 CTGGTGGCGTGCAACAAC 59.974 61.111 1.20 0.00 35.74 3.32
2872 4473 9.825109 TGTACGTATGGATTAAATGAAAGATGA 57.175 29.630 0.00 0.00 0.00 2.92
2894 4495 5.607119 ACTGAATCGGAAAACACATGTAC 57.393 39.130 0.00 0.00 0.00 2.90
2902 4503 6.721571 TGAACTGATACTGAATCGGAAAAC 57.278 37.500 0.00 0.00 42.81 2.43
2907 4509 6.668541 AACATTGAACTGATACTGAATCGG 57.331 37.500 0.00 0.00 45.26 4.18
2931 4533 9.211485 GTGTTCATTTCCAGATTGATGATTTTT 57.789 29.630 0.00 0.00 0.00 1.94
2935 4537 7.655521 ATGTGTTCATTTCCAGATTGATGAT 57.344 32.000 0.00 0.00 0.00 2.45
2959 4561 8.667463 CAACAATACAAGATGTGACATGATGTA 58.333 33.333 17.21 17.21 0.00 2.29
2970 4572 5.068987 ACAGGCAAACAACAATACAAGATGT 59.931 36.000 0.00 0.00 0.00 3.06
2992 4594 3.816523 GGGTAATTTCTTTGACCGTGACA 59.183 43.478 0.00 0.00 32.38 3.58
2993 4595 3.816523 TGGGTAATTTCTTTGACCGTGAC 59.183 43.478 0.00 0.00 32.38 3.67
2999 4601 7.756722 CACTGATCAATGGGTAATTTCTTTGAC 59.243 37.037 0.00 0.00 32.48 3.18
3050 4652 2.411547 CGTGCGTCCAAATCTGAGAAAC 60.412 50.000 0.00 0.00 0.00 2.78
3057 4659 2.746277 GGCCGTGCGTCCAAATCT 60.746 61.111 0.00 0.00 0.00 2.40
3088 4690 3.077556 CGCTGGCCCTACCTCAGT 61.078 66.667 0.00 0.00 40.22 3.41
3134 4736 3.204827 CCTTCCTCCGCATTGCCG 61.205 66.667 2.41 0.00 0.00 5.69
3143 4745 2.993853 CAGTGCTCCCCTTCCTCC 59.006 66.667 0.00 0.00 0.00 4.30
3177 4779 7.610305 ACCGTGAGAACTGGTCATATAATTTTT 59.390 33.333 0.00 0.00 0.00 1.94
3178 4780 7.110155 ACCGTGAGAACTGGTCATATAATTTT 58.890 34.615 0.00 0.00 0.00 1.82
3179 4781 6.650120 ACCGTGAGAACTGGTCATATAATTT 58.350 36.000 0.00 0.00 0.00 1.82
3180 4782 6.235231 ACCGTGAGAACTGGTCATATAATT 57.765 37.500 0.00 0.00 0.00 1.40
3181 4783 5.871396 ACCGTGAGAACTGGTCATATAAT 57.129 39.130 0.00 0.00 0.00 1.28
3182 4784 5.670792 AACCGTGAGAACTGGTCATATAA 57.329 39.130 0.00 0.00 34.11 0.98
3183 4785 5.416083 CAAACCGTGAGAACTGGTCATATA 58.584 41.667 0.00 0.00 34.11 0.86
3184 4786 4.253685 CAAACCGTGAGAACTGGTCATAT 58.746 43.478 0.00 0.00 34.11 1.78
3185 4787 3.659786 CAAACCGTGAGAACTGGTCATA 58.340 45.455 0.00 0.00 34.11 2.15
3186 4788 2.494059 CAAACCGTGAGAACTGGTCAT 58.506 47.619 0.00 0.00 34.11 3.06
3187 4789 1.948104 CAAACCGTGAGAACTGGTCA 58.052 50.000 0.00 0.00 34.11 4.02
3188 4790 0.586802 GCAAACCGTGAGAACTGGTC 59.413 55.000 0.00 0.00 34.11 4.02
3189 4791 0.107410 TGCAAACCGTGAGAACTGGT 60.107 50.000 0.00 0.00 37.68 4.00
3190 4792 0.588252 CTGCAAACCGTGAGAACTGG 59.412 55.000 0.00 0.00 0.00 4.00
3191 4793 0.588252 CCTGCAAACCGTGAGAACTG 59.412 55.000 0.00 0.00 0.00 3.16
3192 4794 0.180406 ACCTGCAAACCGTGAGAACT 59.820 50.000 0.00 0.00 0.00 3.01
3193 4795 0.307760 CACCTGCAAACCGTGAGAAC 59.692 55.000 0.00 0.00 0.00 3.01
3194 4796 0.179234 TCACCTGCAAACCGTGAGAA 59.821 50.000 0.00 0.00 32.85 2.87
3195 4797 1.826709 TCACCTGCAAACCGTGAGA 59.173 52.632 0.00 0.00 32.85 3.27
3196 4798 2.238353 CTCACCTGCAAACCGTGAG 58.762 57.895 14.71 14.71 45.33 3.51
3197 4799 0.531974 GTCTCACCTGCAAACCGTGA 60.532 55.000 5.71 5.71 35.34 4.35
3198 4800 1.507141 GGTCTCACCTGCAAACCGTG 61.507 60.000 0.00 0.00 34.73 4.94
3199 4801 1.227853 GGTCTCACCTGCAAACCGT 60.228 57.895 0.00 0.00 34.73 4.83
3200 4802 1.966451 GGGTCTCACCTGCAAACCG 60.966 63.158 0.00 0.00 38.64 4.44
3201 4803 1.966451 CGGGTCTCACCTGCAAACC 60.966 63.158 0.00 0.00 37.90 3.27
3202 4804 3.655481 CGGGTCTCACCTGCAAAC 58.345 61.111 0.00 0.00 37.90 2.93
3208 4810 0.898320 CATCAAGACGGGTCTCACCT 59.102 55.000 1.16 0.00 39.39 4.00
3209 4811 0.108138 CCATCAAGACGGGTCTCACC 60.108 60.000 1.16 0.00 39.39 4.02
3210 4812 0.895530 TCCATCAAGACGGGTCTCAC 59.104 55.000 1.16 0.00 39.39 3.51
3211 4813 1.482182 CATCCATCAAGACGGGTCTCA 59.518 52.381 1.16 0.00 39.39 3.27
3212 4814 1.757118 TCATCCATCAAGACGGGTCTC 59.243 52.381 1.16 0.00 39.39 3.36
3213 4815 1.482593 GTCATCCATCAAGACGGGTCT 59.517 52.381 0.00 0.00 42.75 3.85
3214 4816 1.207089 TGTCATCCATCAAGACGGGTC 59.793 52.381 0.00 0.00 35.09 4.46
3215 4817 1.275666 TGTCATCCATCAAGACGGGT 58.724 50.000 0.00 0.00 35.09 5.28
3216 4818 2.216046 CATGTCATCCATCAAGACGGG 58.784 52.381 0.00 0.00 35.09 5.28
3217 4819 2.610833 CACATGTCATCCATCAAGACGG 59.389 50.000 0.00 0.00 35.09 4.79
3218 4820 2.610833 CCACATGTCATCCATCAAGACG 59.389 50.000 0.00 0.00 35.09 4.18
3219 4821 2.357009 GCCACATGTCATCCATCAAGAC 59.643 50.000 0.00 0.00 0.00 3.01
3220 4822 2.026075 TGCCACATGTCATCCATCAAGA 60.026 45.455 0.00 0.00 0.00 3.02
3221 4823 2.371306 TGCCACATGTCATCCATCAAG 58.629 47.619 0.00 0.00 0.00 3.02
3222 4824 2.510928 TGCCACATGTCATCCATCAA 57.489 45.000 0.00 0.00 0.00 2.57
3223 4825 2.740506 ATGCCACATGTCATCCATCA 57.259 45.000 0.00 0.00 0.00 3.07
3224 4826 2.953648 TGAATGCCACATGTCATCCATC 59.046 45.455 0.00 0.00 0.00 3.51
3225 4827 2.691526 GTGAATGCCACATGTCATCCAT 59.308 45.455 0.00 0.00 45.03 3.41
3226 4828 2.093890 GTGAATGCCACATGTCATCCA 58.906 47.619 0.00 0.00 45.03 3.41
3227 4829 2.857592 GTGAATGCCACATGTCATCC 57.142 50.000 0.00 0.00 45.03 3.51
3236 4838 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
3237 4839 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
3238 4840 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
3239 4841 6.897259 ATATGCTTTGTGATTTGTGAATGC 57.103 33.333 0.00 0.00 0.00 3.56
3240 4842 9.229784 GAGTATATGCTTTGTGATTTGTGAATG 57.770 33.333 0.00 0.00 0.00 2.67
3241 4843 8.408601 GGAGTATATGCTTTGTGATTTGTGAAT 58.591 33.333 0.00 0.00 0.00 2.57
3242 4844 7.392953 TGGAGTATATGCTTTGTGATTTGTGAA 59.607 33.333 0.00 0.00 0.00 3.18
3243 4845 6.883756 TGGAGTATATGCTTTGTGATTTGTGA 59.116 34.615 0.00 0.00 0.00 3.58
3244 4846 7.087409 TGGAGTATATGCTTTGTGATTTGTG 57.913 36.000 0.00 0.00 0.00 3.33
3245 4847 7.013655 GGATGGAGTATATGCTTTGTGATTTGT 59.986 37.037 0.00 0.00 0.00 2.83
3246 4848 7.365741 GGATGGAGTATATGCTTTGTGATTTG 58.634 38.462 0.00 0.00 0.00 2.32
3247 4849 6.491403 GGGATGGAGTATATGCTTTGTGATTT 59.509 38.462 0.00 0.00 0.00 2.17
3248 4850 6.006449 GGGATGGAGTATATGCTTTGTGATT 58.994 40.000 0.00 0.00 0.00 2.57
3249 4851 5.515534 GGGGATGGAGTATATGCTTTGTGAT 60.516 44.000 0.00 0.00 0.00 3.06
3250 4852 4.202461 GGGGATGGAGTATATGCTTTGTGA 60.202 45.833 0.00 0.00 0.00 3.58
3251 4853 4.074970 GGGGATGGAGTATATGCTTTGTG 58.925 47.826 0.00 0.00 0.00 3.33
3252 4854 3.721575 TGGGGATGGAGTATATGCTTTGT 59.278 43.478 0.00 0.00 0.00 2.83
3253 4855 4.074970 GTGGGGATGGAGTATATGCTTTG 58.925 47.826 0.00 0.00 0.00 2.77
3254 4856 3.074538 GGTGGGGATGGAGTATATGCTTT 59.925 47.826 0.00 0.00 0.00 3.51
3255 4857 2.644798 GGTGGGGATGGAGTATATGCTT 59.355 50.000 0.00 0.00 0.00 3.91
3256 4858 2.157942 AGGTGGGGATGGAGTATATGCT 60.158 50.000 0.00 0.00 0.00 3.79
3257 4859 2.026822 CAGGTGGGGATGGAGTATATGC 60.027 54.545 0.00 0.00 0.00 3.14
3258 4860 3.520696 TCAGGTGGGGATGGAGTATATG 58.479 50.000 0.00 0.00 0.00 1.78
3259 4861 3.943269 TCAGGTGGGGATGGAGTATAT 57.057 47.619 0.00 0.00 0.00 0.86
3260 4862 3.717507 TTCAGGTGGGGATGGAGTATA 57.282 47.619 0.00 0.00 0.00 1.47
3261 4863 2.587060 TTCAGGTGGGGATGGAGTAT 57.413 50.000 0.00 0.00 0.00 2.12
3262 4864 2.352561 TTTCAGGTGGGGATGGAGTA 57.647 50.000 0.00 0.00 0.00 2.59
3263 4865 1.566231 GATTTCAGGTGGGGATGGAGT 59.434 52.381 0.00 0.00 0.00 3.85
3264 4866 1.565759 TGATTTCAGGTGGGGATGGAG 59.434 52.381 0.00 0.00 0.00 3.86
3265 4867 1.565759 CTGATTTCAGGTGGGGATGGA 59.434 52.381 0.00 0.00 40.20 3.41
3266 4868 2.062971 CTGATTTCAGGTGGGGATGG 57.937 55.000 0.00 0.00 40.20 3.51
3276 4878 0.259938 CCCCTTCCCCCTGATTTCAG 59.740 60.000 0.39 0.39 43.40 3.02
3277 4879 1.221213 CCCCCTTCCCCCTGATTTCA 61.221 60.000 0.00 0.00 0.00 2.69
3278 4880 1.620818 CCCCCTTCCCCCTGATTTC 59.379 63.158 0.00 0.00 0.00 2.17
3279 4881 3.871333 CCCCCTTCCCCCTGATTT 58.129 61.111 0.00 0.00 0.00 2.17
3294 4896 2.191981 TCTAATCTTCCTCCACCCCC 57.808 55.000 0.00 0.00 0.00 5.40
3295 4897 2.224646 GCATCTAATCTTCCTCCACCCC 60.225 54.545 0.00 0.00 0.00 4.95
3296 4898 2.708325 AGCATCTAATCTTCCTCCACCC 59.292 50.000 0.00 0.00 0.00 4.61
3297 4899 4.429854 AAGCATCTAATCTTCCTCCACC 57.570 45.455 0.00 0.00 0.00 4.61
3298 4900 5.065731 CACAAAGCATCTAATCTTCCTCCAC 59.934 44.000 0.00 0.00 0.00 4.02
3299 4901 5.045651 TCACAAAGCATCTAATCTTCCTCCA 60.046 40.000 0.00 0.00 0.00 3.86
3300 4902 5.431765 TCACAAAGCATCTAATCTTCCTCC 58.568 41.667 0.00 0.00 0.00 4.30
3301 4903 7.565323 AATCACAAAGCATCTAATCTTCCTC 57.435 36.000 0.00 0.00 0.00 3.71
3302 4904 7.630082 GCAAATCACAAAGCATCTAATCTTCCT 60.630 37.037 0.00 0.00 0.00 3.36
3303 4905 6.474751 GCAAATCACAAAGCATCTAATCTTCC 59.525 38.462 0.00 0.00 0.00 3.46
3304 4906 6.195983 CGCAAATCACAAAGCATCTAATCTTC 59.804 38.462 0.00 0.00 0.00 2.87
3305 4907 6.032094 CGCAAATCACAAAGCATCTAATCTT 58.968 36.000 0.00 0.00 0.00 2.40
3306 4908 5.355071 TCGCAAATCACAAAGCATCTAATCT 59.645 36.000 0.00 0.00 0.00 2.40
3307 4909 5.572211 TCGCAAATCACAAAGCATCTAATC 58.428 37.500 0.00 0.00 0.00 1.75
3308 4910 5.565592 TCGCAAATCACAAAGCATCTAAT 57.434 34.783 0.00 0.00 0.00 1.73
3309 4911 5.369685 TTCGCAAATCACAAAGCATCTAA 57.630 34.783 0.00 0.00 0.00 2.10
3310 4912 5.334319 CATTCGCAAATCACAAAGCATCTA 58.666 37.500 0.00 0.00 0.00 1.98
3311 4913 3.921119 TTCGCAAATCACAAAGCATCT 57.079 38.095 0.00 0.00 0.00 2.90
3312 4914 3.241868 GCATTCGCAAATCACAAAGCATC 60.242 43.478 0.00 0.00 38.36 3.91
3313 4915 2.669434 GCATTCGCAAATCACAAAGCAT 59.331 40.909 0.00 0.00 38.36 3.79
3314 4916 2.060284 GCATTCGCAAATCACAAAGCA 58.940 42.857 0.00 0.00 38.36 3.91
3315 4917 1.391144 GGCATTCGCAAATCACAAAGC 59.609 47.619 0.00 0.00 41.24 3.51
3316 4918 2.409378 GTGGCATTCGCAAATCACAAAG 59.591 45.455 0.00 0.00 41.24 2.77
3317 4919 2.402305 GTGGCATTCGCAAATCACAAA 58.598 42.857 0.00 0.00 41.24 2.83
3318 4920 1.665448 CGTGGCATTCGCAAATCACAA 60.665 47.619 0.00 0.00 41.24 3.33
3319 4921 0.109827 CGTGGCATTCGCAAATCACA 60.110 50.000 0.00 0.00 41.24 3.58
3320 4922 0.109781 ACGTGGCATTCGCAAATCAC 60.110 50.000 0.00 0.00 41.24 3.06
3321 4923 0.109827 CACGTGGCATTCGCAAATCA 60.110 50.000 7.95 0.00 41.24 2.57
3322 4924 0.109781 ACACGTGGCATTCGCAAATC 60.110 50.000 21.57 0.00 41.24 2.17
3323 4925 0.109781 GACACGTGGCATTCGCAAAT 60.110 50.000 18.77 0.00 41.24 2.32
3324 4926 1.281353 GACACGTGGCATTCGCAAA 59.719 52.632 18.77 0.00 41.24 3.68
3325 4927 1.233950 ATGACACGTGGCATTCGCAA 61.234 50.000 31.22 4.08 42.08 4.85
3326 4928 1.670730 ATGACACGTGGCATTCGCA 60.671 52.632 31.22 4.96 42.08 5.10
3327 4929 3.177600 ATGACACGTGGCATTCGC 58.822 55.556 31.22 5.64 42.08 4.70
3332 4934 1.001860 TCTGATGAATGACACGTGGCA 59.998 47.619 29.28 29.28 37.54 4.92
3333 4935 1.725641 TCTGATGAATGACACGTGGC 58.274 50.000 21.57 19.24 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.