Multiple sequence alignment - TraesCS7B01G111800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G111800 chr7B 100.000 5455 0 0 1 5455 128353286 128347832 0.000000e+00 10074.0
1 TraesCS7B01G111800 chr7B 79.231 130 19 7 178 306 583170251 583170129 3.500000e-12 84.2
2 TraesCS7B01G111800 chr7A 91.946 2868 144 33 2051 4907 166760221 166757430 0.000000e+00 3936.0
3 TraesCS7B01G111800 chr7A 91.265 1454 84 14 908 2339 166762397 166760965 0.000000e+00 1941.0
4 TraesCS7B01G111800 chr7A 84.074 653 51 21 2271 2891 166760883 166760252 1.020000e-161 580.0
5 TraesCS7B01G111800 chr7A 90.367 436 27 7 4905 5334 166757335 166756909 4.770000e-155 558.0
6 TraesCS7B01G111800 chr7A 98.551 69 1 0 2271 2339 166760958 166760890 7.420000e-24 122.0
7 TraesCS7B01G111800 chr7A 92.208 77 6 0 671 747 166762598 166762522 5.780000e-20 110.0
8 TraesCS7B01G111800 chr7A 97.619 42 1 0 866 907 166762455 166762414 7.580000e-09 73.1
9 TraesCS7B01G111800 chr7D 89.438 1619 91 28 354 1916 164885394 164883800 0.000000e+00 1969.0
10 TraesCS7B01G111800 chr7D 86.124 1254 115 35 1953 3169 164883639 164882408 0.000000e+00 1297.0
11 TraesCS7B01G111800 chr7D 91.834 845 45 11 4073 4907 164881126 164880296 0.000000e+00 1157.0
12 TraesCS7B01G111800 chr7D 91.353 451 33 3 3224 3669 164882398 164881949 3.610000e-171 612.0
13 TraesCS7B01G111800 chr7D 94.220 173 10 0 4905 5077 164880188 164880016 1.170000e-66 265.0
14 TraesCS7B01G111800 chr7D 90.500 200 16 3 5137 5334 164879994 164879796 1.510000e-65 261.0
15 TraesCS7B01G111800 chr7D 87.281 228 26 3 3833 4058 164881529 164881303 1.950000e-64 257.0
16 TraesCS7B01G111800 chr7D 86.777 121 15 1 4052 4171 164881245 164881125 3.430000e-27 134.0
17 TraesCS7B01G111800 chr5B 74.153 561 90 36 7 531 550196699 550196158 1.210000e-41 182.0
18 TraesCS7B01G111800 chr1B 75.630 357 61 20 228 575 668185356 668185017 2.630000e-33 154.0
19 TraesCS7B01G111800 chr1B 80.488 123 21 3 221 340 614273523 614273401 2.090000e-14 91.6
20 TraesCS7B01G111800 chr4A 80.383 209 29 11 176 377 118990845 118990642 1.220000e-31 148.0
21 TraesCS7B01G111800 chr6B 80.142 141 21 7 164 301 37763633 37763769 1.250000e-16 99.0
22 TraesCS7B01G111800 chr6B 84.444 90 13 1 267 355 279193848 279193937 2.710000e-13 87.9
23 TraesCS7B01G111800 chr2D 79.137 139 23 3 203 340 32732911 32733044 2.090000e-14 91.6
24 TraesCS7B01G111800 chr6D 78.472 144 22 9 217 356 26090215 26090353 9.740000e-13 86.1
25 TraesCS7B01G111800 chr6D 75.824 182 32 11 174 352 147689955 147689783 1.260000e-11 82.4
26 TraesCS7B01G111800 chr4B 79.339 121 23 2 221 340 122276250 122276369 3.500000e-12 84.2
27 TraesCS7B01G111800 chr5A 80.412 97 15 4 261 355 435003226 435003320 2.730000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G111800 chr7B 128347832 128353286 5454 True 10074.000000 10074 100.000000 1 5455 1 chr7B.!!$R1 5454
1 TraesCS7B01G111800 chr7A 166756909 166762598 5689 True 1045.728571 3936 92.290000 671 5334 7 chr7A.!!$R1 4663
2 TraesCS7B01G111800 chr7D 164879796 164885394 5598 True 744.000000 1969 89.690875 354 5334 8 chr7D.!!$R1 4980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 846 0.111253 ACAAGTTTCAGCCCTGGAGG 59.889 55.0 0.00 0.0 39.47 4.30 F
1393 1466 0.460284 ATCGCGTGAGATGGTTCACC 60.460 55.0 5.77 0.0 43.56 4.02 F
2117 2316 0.393537 ATACTGCAGCTTCTGGGCAC 60.394 55.0 15.27 0.0 33.34 5.01 F
2356 2710 0.466372 TGATTGCACCCAACGGTTCA 60.466 50.0 0.00 0.0 42.04 3.18 F
3039 4291 0.671781 AGTCACTCGCTGATTGTGGC 60.672 55.0 0.00 0.0 36.66 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1781 0.247460 GGAAGGAAAAGCCCACATGC 59.753 55.0 0.00 0.00 37.37 4.06 R
3281 4536 0.249531 TTACGGTGAGCGCACAAGAA 60.250 50.0 22.36 9.26 46.96 2.52 R
3973 5517 0.678950 AGCAACAACCATTTTCGGGG 59.321 50.0 0.00 0.00 0.00 5.73 R
4314 6025 0.179018 GGGGGCTTGACGCAATAGAT 60.179 55.0 0.00 0.00 41.67 1.98 R
4581 6293 1.006086 CGATGGCGCACATTGTCTTA 58.994 50.0 10.83 0.00 40.72 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 9.773328 AACTTGTATATGAAAATGTCAATCGTG 57.227 29.630 0.00 0.00 40.50 4.35
113 114 7.910162 ACTTGTATATGAAAATGTCAATCGTGC 59.090 33.333 0.00 0.00 40.50 5.34
114 115 6.418141 TGTATATGAAAATGTCAATCGTGCG 58.582 36.000 0.00 0.00 40.50 5.34
115 116 3.829886 ATGAAAATGTCAATCGTGCGT 57.170 38.095 0.00 0.00 40.50 5.24
116 117 3.617540 TGAAAATGTCAATCGTGCGTT 57.382 38.095 0.00 0.00 31.51 4.84
117 118 3.958704 TGAAAATGTCAATCGTGCGTTT 58.041 36.364 0.00 0.00 31.51 3.60
118 119 3.728221 TGAAAATGTCAATCGTGCGTTTG 59.272 39.130 8.56 8.56 31.51 2.93
119 120 3.617540 AAATGTCAATCGTGCGTTTGA 57.382 38.095 12.30 12.30 33.16 2.69
120 121 3.617540 AATGTCAATCGTGCGTTTGAA 57.382 38.095 16.39 9.67 36.14 2.69
121 122 3.617540 ATGTCAATCGTGCGTTTGAAA 57.382 38.095 16.39 13.07 36.14 2.69
122 123 3.406728 TGTCAATCGTGCGTTTGAAAA 57.593 38.095 16.39 8.16 36.14 2.29
123 124 3.759418 TGTCAATCGTGCGTTTGAAAAA 58.241 36.364 16.39 6.27 36.14 1.94
248 249 7.850268 TGTGTTGATCATGTATTCAAAAACG 57.150 32.000 0.00 0.00 33.90 3.60
249 250 7.421599 TGTGTTGATCATGTATTCAAAAACGT 58.578 30.769 0.00 0.00 33.90 3.99
250 251 7.918033 TGTGTTGATCATGTATTCAAAAACGTT 59.082 29.630 0.00 0.00 33.90 3.99
251 252 9.388346 GTGTTGATCATGTATTCAAAAACGTTA 57.612 29.630 0.00 0.00 33.90 3.18
252 253 9.952188 TGTTGATCATGTATTCAAAAACGTTAA 57.048 25.926 0.00 0.00 33.90 2.01
257 258 9.787532 ATCATGTATTCAAAAACGTTAATCTGG 57.212 29.630 0.00 0.00 0.00 3.86
258 259 8.788806 TCATGTATTCAAAAACGTTAATCTGGT 58.211 29.630 0.00 0.00 0.00 4.00
425 426 5.635700 CCGAGTGAAAACAAAAGAAAACCAA 59.364 36.000 0.00 0.00 0.00 3.67
576 581 5.293560 ACAGAGAGAGAAACGAAGAAAAGG 58.706 41.667 0.00 0.00 0.00 3.11
578 583 3.060602 AGAGAGAAACGAAGAAAAGGCG 58.939 45.455 0.00 0.00 0.00 5.52
588 593 4.156182 CGAAGAAAAGGCGGTGAATAAAC 58.844 43.478 0.00 0.00 0.00 2.01
597 602 5.286438 AGGCGGTGAATAAACAAGAAAAAC 58.714 37.500 0.00 0.00 0.00 2.43
603 608 9.471742 CGGTGAATAAACAAGAAAAACAAAAAG 57.528 29.630 0.00 0.00 0.00 2.27
609 614 6.811253 AACAAGAAAAACAAAAAGGAACCC 57.189 33.333 0.00 0.00 0.00 4.11
621 626 3.904800 AAGGAACCCAAAAACTTGTGG 57.095 42.857 0.00 0.00 34.44 4.17
625 630 3.449377 GGAACCCAAAAACTTGTGGAAGA 59.551 43.478 0.00 0.00 37.03 2.87
633 639 1.376037 CTTGTGGAAGACCGGCTCC 60.376 63.158 0.00 6.06 39.42 4.70
666 672 5.055144 ACTAGATCGCGACATACTAACTCA 58.945 41.667 12.93 0.00 0.00 3.41
724 730 0.235665 CGCTGCAACTGAACGATTGT 59.764 50.000 0.00 0.00 0.00 2.71
732 738 0.792640 CTGAACGATTGTGCTCGCTT 59.207 50.000 0.00 0.00 42.35 4.68
764 785 0.900647 AGGACTGTTCTCTGGGTCGG 60.901 60.000 0.00 0.00 0.00 4.79
822 843 1.402787 AACACAAGTTTCAGCCCTGG 58.597 50.000 0.00 0.00 33.11 4.45
823 844 0.550914 ACACAAGTTTCAGCCCTGGA 59.449 50.000 0.00 0.00 0.00 3.86
824 845 1.242076 CACAAGTTTCAGCCCTGGAG 58.758 55.000 0.00 0.00 0.00 3.86
825 846 0.111253 ACAAGTTTCAGCCCTGGAGG 59.889 55.000 0.00 0.00 39.47 4.30
842 863 3.462678 GCCTGGACCGGACCTCTC 61.463 72.222 23.51 8.58 0.00 3.20
843 864 2.360980 CCTGGACCGGACCTCTCT 59.639 66.667 23.51 0.00 0.00 3.10
844 865 1.755008 CCTGGACCGGACCTCTCTC 60.755 68.421 23.51 0.56 0.00 3.20
845 866 1.000771 CTGGACCGGACCTCTCTCA 60.001 63.158 23.51 1.30 0.00 3.27
846 867 1.000771 TGGACCGGACCTCTCTCAG 60.001 63.158 23.51 0.00 0.00 3.35
959 996 2.733593 GACGAGACCACGCCACAC 60.734 66.667 0.00 0.00 36.70 3.82
1014 1054 1.802880 GCAGCGATGGTGTACTTCGAT 60.803 52.381 1.46 3.55 46.27 3.59
1090 1130 2.364579 TACGCCGGAACCCCATCT 60.365 61.111 5.05 0.00 0.00 2.90
1094 1134 2.066999 GCCGGAACCCCATCTCTCT 61.067 63.158 5.05 0.00 0.00 3.10
1261 1315 1.007387 CGCCCAGGCTTGTTGTTTC 60.007 57.895 7.17 0.00 39.32 2.78
1274 1328 1.339929 GTTGTTTCGCCCAGATTTGGT 59.660 47.619 0.96 0.00 43.40 3.67
1277 1331 1.068541 GTTTCGCCCAGATTTGGTGAC 60.069 52.381 0.96 0.00 41.88 3.67
1316 1370 4.332828 ACCAGGAAGTGTGTATTTTAGGC 58.667 43.478 0.00 0.00 0.00 3.93
1323 1377 2.616842 GTGTGTATTTTAGGCCCCGATG 59.383 50.000 0.00 0.00 0.00 3.84
1343 1416 3.011818 TGACGCGTCTCAACTAGGAATA 58.988 45.455 36.27 11.70 0.00 1.75
1360 1433 1.520494 ATAGAGCCGATCGAGCGTTA 58.480 50.000 22.70 14.92 34.64 3.18
1366 1439 2.121786 GCCGATCGAGCGTTATTGTAA 58.878 47.619 22.70 0.00 0.00 2.41
1393 1466 0.460284 ATCGCGTGAGATGGTTCACC 60.460 55.000 5.77 0.00 43.56 4.02
1450 1523 5.077564 TGGTATAGTATCAGTGGCTCGATT 58.922 41.667 0.00 0.00 0.00 3.34
1603 1676 8.839310 ATGATAGTGAGATGCTAATTACAACC 57.161 34.615 0.00 0.00 0.00 3.77
1628 1701 9.622004 CCAAATGTCTGCTTGATATCATAAATC 57.378 33.333 6.17 0.00 0.00 2.17
1713 1788 2.135903 TAGTGTGGGTGGGCATGTGG 62.136 60.000 0.00 0.00 0.00 4.17
1717 1792 4.702274 GGGTGGGCATGTGGGCTT 62.702 66.667 0.00 0.00 42.84 4.35
1718 1793 2.604382 GGTGGGCATGTGGGCTTT 60.604 61.111 0.00 0.00 42.84 3.51
1719 1794 2.216331 GGTGGGCATGTGGGCTTTT 61.216 57.895 0.00 0.00 42.84 2.27
1720 1795 1.293179 GTGGGCATGTGGGCTTTTC 59.707 57.895 0.00 0.00 42.84 2.29
1721 1796 1.912763 TGGGCATGTGGGCTTTTCC 60.913 57.895 0.00 0.00 42.84 3.13
1722 1797 1.610379 GGGCATGTGGGCTTTTCCT 60.610 57.895 0.00 0.00 42.84 3.36
1723 1798 1.194121 GGGCATGTGGGCTTTTCCTT 61.194 55.000 0.00 0.00 42.84 3.36
1765 1840 5.738619 TGCTGTCCATGAAGAAAGTACTA 57.261 39.130 0.00 0.00 0.00 1.82
1778 1853 6.561519 AGAAAGTACTATTGTGCCCACTAT 57.438 37.500 0.00 0.61 0.00 2.12
1834 1909 5.116084 AGCCAGGAAAATAGATAGTGCAA 57.884 39.130 0.00 0.00 0.00 4.08
1886 1961 0.892814 AAGCAAGTGGCCTTCTGCTC 60.893 55.000 21.28 6.64 46.50 4.26
1951 2150 6.459066 TGTCCTGACTTCATCTAGAAAACTG 58.541 40.000 0.00 0.00 35.40 3.16
2013 2212 3.748048 TGTGATTAGCTCAACACTGAAGC 59.252 43.478 9.38 0.00 35.07 3.86
2092 2291 1.200020 GTGCAGCCCAAACATACACTC 59.800 52.381 0.00 0.00 0.00 3.51
2114 2313 3.063997 CGTAAAATACTGCAGCTTCTGGG 59.936 47.826 15.27 0.00 31.21 4.45
2117 2316 0.393537 ATACTGCAGCTTCTGGGCAC 60.394 55.000 15.27 0.00 33.34 5.01
2118 2317 1.767654 TACTGCAGCTTCTGGGCACA 61.768 55.000 15.27 0.00 33.34 4.57
2130 2329 2.669878 GGGCACACATGTCCCAAAT 58.330 52.632 14.75 0.00 45.80 2.32
2199 2398 8.728088 ATTTTTGTTAGTGCTAGATTTTCACG 57.272 30.769 0.00 0.00 35.97 4.35
2200 2399 7.485418 TTTTGTTAGTGCTAGATTTTCACGA 57.515 32.000 0.00 0.00 35.97 4.35
2226 2425 8.432110 TGACTCGATAAAGCTTTTATATGCAA 57.568 30.769 18.47 0.00 0.00 4.08
2244 2448 1.937223 CAAAACTACACTGTCCGCACA 59.063 47.619 0.00 0.00 0.00 4.57
2292 2496 4.302559 TGCTTCAGTACTCTCCTAGTCA 57.697 45.455 0.00 0.00 39.80 3.41
2356 2710 0.466372 TGATTGCACCCAACGGTTCA 60.466 50.000 0.00 0.00 42.04 3.18
2369 2723 5.127031 CCCAACGGTTCAGGAAATCATAAAT 59.873 40.000 1.01 0.00 0.00 1.40
2373 2727 9.236691 CAACGGTTCAGGAAATCATAAATATTG 57.763 33.333 0.00 0.00 0.00 1.90
2470 2828 8.411683 AGCACTTCCAGATGAAATATTTGAATC 58.588 33.333 5.17 8.60 31.06 2.52
2498 2856 9.084164 CCATAGTTATATAGGTGCGTAAATCAC 57.916 37.037 0.00 0.00 0.00 3.06
2527 2885 3.181491 GCTGTGCCTTTTAGTTGACAACA 60.181 43.478 20.08 3.96 0.00 3.33
2550 2908 1.842562 AGCACATTCAGCATAGAGGGT 59.157 47.619 0.00 0.00 0.00 4.34
2569 2927 3.620488 GGTCCATTGTGCTAGGAAATGA 58.380 45.455 15.56 4.98 33.96 2.57
2592 2950 5.365619 ACGTAGATACCATTGGAAATCACC 58.634 41.667 10.37 5.88 0.00 4.02
2620 2978 2.287547 GCAGAACTTCGAAAATGTGCCA 60.288 45.455 16.57 0.00 0.00 4.92
2623 2981 3.057315 AGAACTTCGAAAATGTGCCATGG 60.057 43.478 7.63 7.63 0.00 3.66
2629 2987 2.093553 CGAAAATGTGCCATGGGGAAAT 60.094 45.455 15.13 0.00 35.59 2.17
2644 3896 5.158889 TGGGGAAATTTTGGTTGACCTTAT 58.841 37.500 1.34 0.00 36.82 1.73
2712 3964 6.963796 ACTGTAGCTGAATGTTTTTCTCTTG 58.036 36.000 0.00 0.00 0.00 3.02
2750 4002 8.827599 CGTCTTAATTGACTTTTGTTGTAATCG 58.172 33.333 0.00 0.00 35.00 3.34
2830 4082 7.041916 CCATGATTTGTGTTGTTAAATGCAGTT 60.042 33.333 4.23 4.23 0.00 3.16
2950 4202 8.400947 CCTTCTATGTGATTTTAATGACAGGTG 58.599 37.037 1.57 0.00 36.02 4.00
3039 4291 0.671781 AGTCACTCGCTGATTGTGGC 60.672 55.000 0.00 0.00 36.66 5.01
3040 4292 0.950555 GTCACTCGCTGATTGTGGCA 60.951 55.000 0.00 0.00 36.46 4.92
3083 4335 7.829211 TGCACTTGCCTATTACTTTTTCTAGAT 59.171 33.333 0.00 0.00 41.18 1.98
3182 4436 1.254026 TGTTGTACTCCCTCTGTCCG 58.746 55.000 0.00 0.00 0.00 4.79
3184 4438 1.617357 GTTGTACTCCCTCTGTCCGTT 59.383 52.381 0.00 0.00 0.00 4.44
3281 4536 5.296780 GGATTTTGTATGTCACCGTGATCAT 59.703 40.000 4.13 11.92 0.00 2.45
3423 4683 9.677567 TTGTTCTTTTGTTAAGATTAGCACATC 57.322 29.630 0.00 0.00 0.00 3.06
3561 4821 2.049248 CGGTTGGCATTGTGGTGC 60.049 61.111 0.00 0.00 44.31 5.01
3576 4836 1.343069 GGTGCTATAGGCTAGGTGCT 58.657 55.000 14.25 0.00 42.39 4.40
3696 5239 9.668497 GTACTTTTGACCCATCTTAGACTTAAT 57.332 33.333 0.00 0.00 0.00 1.40
3738 5281 7.262048 AGTCAAACAATATGTTTCCGTTTGTT 58.738 30.769 12.93 0.00 46.61 2.83
3753 5296 5.818336 TCCGTTTGTTTGTTCTCTTGACATA 59.182 36.000 0.00 0.00 0.00 2.29
3755 5298 5.907391 CGTTTGTTTGTTCTCTTGACATACC 59.093 40.000 0.00 0.00 0.00 2.73
3770 5313 7.444183 TCTTGACATACCCTTGTTAAAGTTCTG 59.556 37.037 0.00 0.00 31.07 3.02
3774 5317 7.287810 ACATACCCTTGTTAAAGTTCTGAAGT 58.712 34.615 0.00 0.00 0.00 3.01
3782 5325 8.500753 TTGTTAAAGTTCTGAAGTGAAAGCTA 57.499 30.769 0.00 0.00 0.00 3.32
3783 5326 8.677148 TGTTAAAGTTCTGAAGTGAAAGCTAT 57.323 30.769 0.00 0.00 0.00 2.97
3820 5363 9.791801 ATTAAATTTTATTTCTTTGCCAGTGGT 57.208 25.926 11.74 0.00 0.00 4.16
3821 5364 9.620259 TTAAATTTTATTTCTTTGCCAGTGGTT 57.380 25.926 11.74 0.00 0.00 3.67
3822 5365 8.518430 AAATTTTATTTCTTTGCCAGTGGTTT 57.482 26.923 11.74 0.00 0.00 3.27
3823 5366 8.518430 AATTTTATTTCTTTGCCAGTGGTTTT 57.482 26.923 11.74 0.00 0.00 2.43
3824 5367 9.620259 AATTTTATTTCTTTGCCAGTGGTTTTA 57.380 25.926 11.74 0.00 0.00 1.52
3825 5368 8.655651 TTTTATTTCTTTGCCAGTGGTTTTAG 57.344 30.769 11.74 3.87 0.00 1.85
3826 5369 7.589958 TTATTTCTTTGCCAGTGGTTTTAGA 57.410 32.000 11.74 6.21 0.00 2.10
3827 5370 4.911514 TTCTTTGCCAGTGGTTTTAGAC 57.088 40.909 11.74 0.00 0.00 2.59
3828 5371 4.164843 TCTTTGCCAGTGGTTTTAGACT 57.835 40.909 11.74 0.00 0.00 3.24
3829 5372 5.298989 TCTTTGCCAGTGGTTTTAGACTA 57.701 39.130 11.74 0.00 0.00 2.59
3830 5373 5.876357 TCTTTGCCAGTGGTTTTAGACTAT 58.124 37.500 11.74 0.00 0.00 2.12
3831 5374 5.938125 TCTTTGCCAGTGGTTTTAGACTATC 59.062 40.000 11.74 0.00 0.00 2.08
3871 5415 0.947244 CGAGCAGCTTGTTTCCACTT 59.053 50.000 0.00 0.00 0.00 3.16
3872 5416 1.334869 CGAGCAGCTTGTTTCCACTTT 59.665 47.619 0.00 0.00 0.00 2.66
3930 5474 4.700268 TGTTGTGCTATGGTGCTAAATG 57.300 40.909 0.00 0.00 0.00 2.32
3933 5477 4.220693 TGTGCTATGGTGCTAAATGACT 57.779 40.909 0.00 0.00 0.00 3.41
3973 5517 3.873952 GTCTCTTGGCTACATTGTGGATC 59.126 47.826 4.11 0.00 0.00 3.36
3980 5524 2.682563 GCTACATTGTGGATCCCCGAAA 60.683 50.000 9.90 0.00 34.29 3.46
3982 5526 3.100207 ACATTGTGGATCCCCGAAAAT 57.900 42.857 9.90 0.00 34.29 1.82
3983 5527 2.760092 ACATTGTGGATCCCCGAAAATG 59.240 45.455 9.90 10.31 36.24 2.32
3985 5529 0.701731 TGTGGATCCCCGAAAATGGT 59.298 50.000 9.90 0.00 34.29 3.55
4005 5549 4.464597 TGGTTGTTGCTTCCTACTTGTTTT 59.535 37.500 0.00 0.00 0.00 2.43
4041 5585 2.475187 GCGATCATGTGCACTTTGTCTC 60.475 50.000 19.41 14.25 0.00 3.36
4048 5592 2.869801 TGTGCACTTTGTCTCGGTTAAG 59.130 45.455 19.41 0.00 0.00 1.85
4119 5825 6.929049 CCTGACTGTTCTAATATTAATGCGGA 59.071 38.462 0.00 0.00 0.00 5.54
4182 5892 2.266554 GCTCTGCTGACTGTATGTGAC 58.733 52.381 0.00 0.00 0.00 3.67
4196 5906 1.593196 TGTGACTACTTTGCAGTGCC 58.407 50.000 13.72 0.00 34.06 5.01
4246 5956 2.746362 CGCAAAGAAGATGGAGAAGCTT 59.254 45.455 0.00 0.00 0.00 3.74
4308 6019 7.890127 TGATGGTATCTTCCATTGTTTCTCTTT 59.110 33.333 0.00 0.00 46.72 2.52
4338 6049 2.573340 GCGTCAAGCCCCCAAATG 59.427 61.111 0.00 0.00 40.81 2.32
4347 6058 1.693606 AGCCCCCAAATGTTTTCACTG 59.306 47.619 0.00 0.00 0.00 3.66
4359 6070 3.831911 TGTTTTCACTGATTTGGATCCCC 59.168 43.478 9.90 0.00 0.00 4.81
4369 6080 1.906105 TTGGATCCCCGACCTTTCCG 61.906 60.000 9.90 0.00 34.29 4.30
4468 6179 3.389329 AGGCAGTAGTATCATGTTCTGGG 59.611 47.826 0.00 0.00 0.00 4.45
4569 6281 1.349067 GTGGGTGGTCTAAGAGTGGT 58.651 55.000 0.00 0.00 0.00 4.16
4581 6293 6.015265 GGTCTAAGAGTGGTGAGTAGTTTTCT 60.015 42.308 0.00 0.00 0.00 2.52
4609 6323 2.203070 GCGCCATCGTTGGATCCT 60.203 61.111 16.83 0.00 46.92 3.24
4623 6337 2.247358 GGATCCTTTTTCCTGGCACAA 58.753 47.619 3.84 0.00 38.70 3.33
4774 6492 9.487790 TTTGGTGATGATTTTTCATTTAGGAAC 57.512 29.630 0.00 0.00 0.00 3.62
4801 6519 6.205076 TGGCAAAATGTTTTCTTGAATCCATG 59.795 34.615 0.00 0.00 0.00 3.66
4804 6522 7.799914 GCAAAATGTTTTCTTGAATCCATGAAC 59.200 33.333 0.00 0.00 36.55 3.18
4818 6536 2.095314 CCATGAACACTTATGCGTTGCA 60.095 45.455 0.00 0.00 44.86 4.08
4824 6542 1.264020 CACTTATGCGTTGCACACTGT 59.736 47.619 0.00 0.00 43.04 3.55
4860 6578 1.219522 ACAAGTACAACGCTGCGGAC 61.220 55.000 26.95 17.09 0.00 4.79
4883 6601 1.374947 CAGTGACGGTGGGGTTGAT 59.625 57.895 0.00 0.00 0.00 2.57
4884 6602 0.250727 CAGTGACGGTGGGGTTGATT 60.251 55.000 0.00 0.00 0.00 2.57
4885 6603 0.476771 AGTGACGGTGGGGTTGATTT 59.523 50.000 0.00 0.00 0.00 2.17
4920 6748 4.518970 TGATAGCTGGTTTGTTCCTTGTTC 59.481 41.667 0.00 0.00 0.00 3.18
4944 6772 2.551032 TGGATTCATTCATCGCATCAGC 59.449 45.455 0.00 0.00 37.42 4.26
5007 6835 7.857885 CCGCCTTGAATCTTATCTTGTTATTTC 59.142 37.037 0.00 0.00 0.00 2.17
5124 6952 7.437862 GTGCTCTTGAATTCAGATTACTAGAGG 59.562 40.741 23.06 11.57 31.47 3.69
5164 6993 2.944542 GCAGATCCATGGATGCATAGGG 60.945 54.545 32.05 12.92 34.60 3.53
5198 7027 3.624777 ACTCCATTGAAATCGGCTCAAT 58.375 40.909 2.83 2.83 42.85 2.57
5205 7034 6.237542 CCATTGAAATCGGCTCAATTTTTACG 60.238 38.462 5.22 0.00 40.69 3.18
5211 7040 2.417239 CGGCTCAATTTTTACGGTGCTA 59.583 45.455 0.00 0.00 0.00 3.49
5225 7054 2.029470 CGGTGCTAAAAAGGCATTTGGA 60.029 45.455 0.00 0.00 41.86 3.53
5263 7096 1.227853 GGCCTCCGTGTGTGTTCTT 60.228 57.895 0.00 0.00 0.00 2.52
5322 7156 3.544356 CCGAAGGCTTTTTCAGAAGAC 57.456 47.619 0.00 0.00 46.14 3.01
5334 7168 3.753294 TCAGAAGACGGAAGCTTTCTT 57.247 42.857 10.90 10.90 34.68 2.52
5335 7169 4.073293 TCAGAAGACGGAAGCTTTCTTT 57.927 40.909 12.08 0.41 31.48 2.52
5336 7170 4.451900 TCAGAAGACGGAAGCTTTCTTTT 58.548 39.130 12.08 5.25 31.48 2.27
5337 7171 4.511826 TCAGAAGACGGAAGCTTTCTTTTC 59.488 41.667 12.08 8.43 31.48 2.29
5338 7172 4.513318 CAGAAGACGGAAGCTTTCTTTTCT 59.487 41.667 12.08 10.21 31.48 2.52
5339 7173 5.008118 CAGAAGACGGAAGCTTTCTTTTCTT 59.992 40.000 12.08 11.58 33.03 2.52
5340 7174 5.237561 AGAAGACGGAAGCTTTCTTTTCTTC 59.762 40.000 21.87 21.87 39.79 2.87
5343 7177 3.560902 GGAAGCTTTCTTTTCTTCCCG 57.439 47.619 0.00 0.00 46.23 5.14
5344 7178 2.351835 GGAAGCTTTCTTTTCTTCCCGC 60.352 50.000 0.00 0.00 46.23 6.13
5345 7179 1.248486 AGCTTTCTTTTCTTCCCGCC 58.752 50.000 0.00 0.00 0.00 6.13
5346 7180 0.243907 GCTTTCTTTTCTTCCCGCCC 59.756 55.000 0.00 0.00 0.00 6.13
5347 7181 1.616159 CTTTCTTTTCTTCCCGCCCA 58.384 50.000 0.00 0.00 0.00 5.36
5348 7182 1.541588 CTTTCTTTTCTTCCCGCCCAG 59.458 52.381 0.00 0.00 0.00 4.45
5349 7183 0.476771 TTCTTTTCTTCCCGCCCAGT 59.523 50.000 0.00 0.00 0.00 4.00
5350 7184 1.354101 TCTTTTCTTCCCGCCCAGTA 58.646 50.000 0.00 0.00 0.00 2.74
5351 7185 1.278127 TCTTTTCTTCCCGCCCAGTAG 59.722 52.381 0.00 0.00 0.00 2.57
5352 7186 1.003233 CTTTTCTTCCCGCCCAGTAGT 59.997 52.381 0.00 0.00 0.00 2.73
5353 7187 0.323629 TTTCTTCCCGCCCAGTAGTG 59.676 55.000 0.00 0.00 0.00 2.74
5354 7188 0.834687 TTCTTCCCGCCCAGTAGTGT 60.835 55.000 0.00 0.00 0.00 3.55
5355 7189 1.218316 CTTCCCGCCCAGTAGTGTC 59.782 63.158 0.00 0.00 0.00 3.67
5356 7190 2.240162 CTTCCCGCCCAGTAGTGTCC 62.240 65.000 0.00 0.00 0.00 4.02
5357 7191 2.683933 CCCGCCCAGTAGTGTCCT 60.684 66.667 0.00 0.00 0.00 3.85
5358 7192 2.291043 CCCGCCCAGTAGTGTCCTT 61.291 63.158 0.00 0.00 0.00 3.36
5359 7193 1.079127 CCGCCCAGTAGTGTCCTTG 60.079 63.158 0.00 0.00 0.00 3.61
5360 7194 1.541310 CCGCCCAGTAGTGTCCTTGA 61.541 60.000 0.00 0.00 0.00 3.02
5361 7195 0.389948 CGCCCAGTAGTGTCCTTGAC 60.390 60.000 0.00 0.00 0.00 3.18
5362 7196 0.685097 GCCCAGTAGTGTCCTTGACA 59.315 55.000 0.00 0.00 40.50 3.58
5363 7197 1.338200 GCCCAGTAGTGTCCTTGACAG 60.338 57.143 0.00 0.00 43.57 3.51
5364 7198 1.338200 CCCAGTAGTGTCCTTGACAGC 60.338 57.143 0.00 0.00 43.57 4.40
5365 7199 1.344438 CCAGTAGTGTCCTTGACAGCA 59.656 52.381 0.00 0.00 43.57 4.41
5366 7200 2.224281 CCAGTAGTGTCCTTGACAGCAA 60.224 50.000 0.00 0.00 43.57 3.91
5367 7201 3.466836 CAGTAGTGTCCTTGACAGCAAA 58.533 45.455 0.00 0.00 43.57 3.68
5368 7202 3.496130 CAGTAGTGTCCTTGACAGCAAAG 59.504 47.826 0.00 0.00 43.57 2.77
5369 7203 1.972872 AGTGTCCTTGACAGCAAAGG 58.027 50.000 0.00 0.00 43.57 3.11
5370 7204 1.212935 AGTGTCCTTGACAGCAAAGGT 59.787 47.619 0.00 0.00 43.57 3.50
5371 7205 2.024414 GTGTCCTTGACAGCAAAGGTT 58.976 47.619 0.00 0.00 43.57 3.50
5372 7206 3.118038 AGTGTCCTTGACAGCAAAGGTTA 60.118 43.478 0.00 0.00 43.57 2.85
5373 7207 3.630312 GTGTCCTTGACAGCAAAGGTTAA 59.370 43.478 0.00 0.00 43.57 2.01
5374 7208 4.097286 GTGTCCTTGACAGCAAAGGTTAAA 59.903 41.667 0.00 0.00 43.57 1.52
5375 7209 4.338118 TGTCCTTGACAGCAAAGGTTAAAG 59.662 41.667 2.35 0.00 37.67 1.85
5376 7210 4.578928 GTCCTTGACAGCAAAGGTTAAAGA 59.421 41.667 2.35 0.00 32.73 2.52
5377 7211 4.821805 TCCTTGACAGCAAAGGTTAAAGAG 59.178 41.667 2.35 0.00 32.73 2.85
5378 7212 4.540824 CTTGACAGCAAAGGTTAAAGAGC 58.459 43.478 0.00 0.00 32.73 4.09
5379 7213 2.548057 TGACAGCAAAGGTTAAAGAGCG 59.452 45.455 0.00 0.00 0.00 5.03
5380 7214 2.548480 GACAGCAAAGGTTAAAGAGCGT 59.452 45.455 0.00 0.00 0.00 5.07
5381 7215 3.735591 ACAGCAAAGGTTAAAGAGCGTA 58.264 40.909 0.00 0.00 0.00 4.42
5382 7216 4.324267 ACAGCAAAGGTTAAAGAGCGTAT 58.676 39.130 0.00 0.00 0.00 3.06
5383 7217 4.392138 ACAGCAAAGGTTAAAGAGCGTATC 59.608 41.667 0.00 0.00 0.00 2.24
5384 7218 4.391830 CAGCAAAGGTTAAAGAGCGTATCA 59.608 41.667 0.00 0.00 0.00 2.15
5385 7219 5.001232 AGCAAAGGTTAAAGAGCGTATCAA 58.999 37.500 0.00 0.00 0.00 2.57
5386 7220 5.472137 AGCAAAGGTTAAAGAGCGTATCAAA 59.528 36.000 0.00 0.00 0.00 2.69
5387 7221 6.151144 AGCAAAGGTTAAAGAGCGTATCAAAT 59.849 34.615 0.00 0.00 0.00 2.32
5388 7222 6.806739 GCAAAGGTTAAAGAGCGTATCAAATT 59.193 34.615 0.00 0.00 0.00 1.82
5389 7223 7.966204 GCAAAGGTTAAAGAGCGTATCAAATTA 59.034 33.333 0.00 0.00 0.00 1.40
5392 7226 8.154649 AGGTTAAAGAGCGTATCAAATTATGG 57.845 34.615 0.00 0.00 0.00 2.74
5393 7227 6.856426 GGTTAAAGAGCGTATCAAATTATGGC 59.144 38.462 0.00 0.00 0.00 4.40
5394 7228 5.438761 AAAGAGCGTATCAAATTATGGCC 57.561 39.130 0.00 0.00 0.00 5.36
5395 7229 4.085357 AGAGCGTATCAAATTATGGCCA 57.915 40.909 8.56 8.56 0.00 5.36
5396 7230 4.655963 AGAGCGTATCAAATTATGGCCAT 58.344 39.130 24.45 24.45 0.00 4.40
5397 7231 5.072741 AGAGCGTATCAAATTATGGCCATT 58.927 37.500 26.37 3.13 0.00 3.16
5398 7232 5.182001 AGAGCGTATCAAATTATGGCCATTC 59.818 40.000 26.37 10.36 0.00 2.67
5399 7233 4.083324 AGCGTATCAAATTATGGCCATTCG 60.083 41.667 26.37 8.51 0.00 3.34
5400 7234 4.083537 GCGTATCAAATTATGGCCATTCGA 60.084 41.667 26.37 13.53 0.00 3.71
5401 7235 5.391950 GCGTATCAAATTATGGCCATTCGAT 60.392 40.000 26.37 19.07 0.00 3.59
5402 7236 6.611381 CGTATCAAATTATGGCCATTCGATT 58.389 36.000 26.37 18.07 0.00 3.34
5403 7237 6.524239 CGTATCAAATTATGGCCATTCGATTG 59.476 38.462 26.37 21.76 0.00 2.67
5404 7238 5.850557 TCAAATTATGGCCATTCGATTGT 57.149 34.783 26.37 0.00 0.00 2.71
5405 7239 5.830912 TCAAATTATGGCCATTCGATTGTC 58.169 37.500 26.37 0.00 0.00 3.18
5406 7240 4.853924 AATTATGGCCATTCGATTGTCC 57.146 40.909 26.37 3.65 0.00 4.02
5407 7241 1.877637 TATGGCCATTCGATTGTCCG 58.122 50.000 26.37 0.00 0.00 4.79
5408 7242 1.447317 ATGGCCATTCGATTGTCCGC 61.447 55.000 14.09 3.15 0.00 5.54
5409 7243 1.819632 GGCCATTCGATTGTCCGCT 60.820 57.895 0.00 0.00 0.00 5.52
5410 7244 1.353103 GCCATTCGATTGTCCGCTG 59.647 57.895 6.56 0.00 0.00 5.18
5411 7245 2.016961 CCATTCGATTGTCCGCTGG 58.983 57.895 6.56 0.00 0.00 4.85
5412 7246 0.461870 CCATTCGATTGTCCGCTGGA 60.462 55.000 6.56 0.00 35.51 3.86
5413 7247 1.586422 CATTCGATTGTCCGCTGGAT 58.414 50.000 0.67 0.00 32.73 3.41
5414 7248 1.528586 CATTCGATTGTCCGCTGGATC 59.471 52.381 0.67 0.00 32.73 3.36
5415 7249 0.534873 TTCGATTGTCCGCTGGATCA 59.465 50.000 0.00 0.00 32.73 2.92
5416 7250 0.103026 TCGATTGTCCGCTGGATCAG 59.897 55.000 0.00 0.00 32.73 2.90
5431 7265 6.704289 CTGGATCAGCATTGGATAAAGAAA 57.296 37.500 0.00 0.00 0.00 2.52
5432 7266 6.704289 TGGATCAGCATTGGATAAAGAAAG 57.296 37.500 0.00 0.00 0.00 2.62
5433 7267 6.189859 TGGATCAGCATTGGATAAAGAAAGT 58.810 36.000 0.00 0.00 0.00 2.66
5434 7268 6.095860 TGGATCAGCATTGGATAAAGAAAGTG 59.904 38.462 0.00 0.00 0.00 3.16
5435 7269 5.902613 TCAGCATTGGATAAAGAAAGTGG 57.097 39.130 0.00 0.00 0.00 4.00
5436 7270 4.158394 TCAGCATTGGATAAAGAAAGTGGC 59.842 41.667 0.00 0.00 0.00 5.01
5437 7271 4.159135 CAGCATTGGATAAAGAAAGTGGCT 59.841 41.667 0.00 0.00 0.00 4.75
5438 7272 4.774200 AGCATTGGATAAAGAAAGTGGCTT 59.226 37.500 0.00 0.00 0.00 4.35
5439 7273 5.246883 AGCATTGGATAAAGAAAGTGGCTTT 59.753 36.000 0.00 0.00 38.90 3.51
5440 7274 5.349543 GCATTGGATAAAGAAAGTGGCTTTG 59.650 40.000 0.00 0.00 36.35 2.77
5441 7275 4.519540 TGGATAAAGAAAGTGGCTTTGC 57.480 40.909 0.00 0.00 36.35 3.68
5442 7276 4.151883 TGGATAAAGAAAGTGGCTTTGCT 58.848 39.130 0.00 0.00 36.35 3.91
5443 7277 4.218417 TGGATAAAGAAAGTGGCTTTGCTC 59.782 41.667 0.00 0.00 36.35 4.26
5444 7278 4.380973 GGATAAAGAAAGTGGCTTTGCTCC 60.381 45.833 0.00 0.00 36.35 4.70
5445 7279 2.371658 AAGAAAGTGGCTTTGCTCCT 57.628 45.000 0.00 0.00 33.49 3.69
5446 7280 2.371658 AGAAAGTGGCTTTGCTCCTT 57.628 45.000 0.00 0.00 33.49 3.36
5447 7281 1.959282 AGAAAGTGGCTTTGCTCCTTG 59.041 47.619 0.00 0.00 33.49 3.61
5448 7282 1.000171 GAAAGTGGCTTTGCTCCTTGG 60.000 52.381 0.00 0.00 33.49 3.61
5449 7283 0.829182 AAGTGGCTTTGCTCCTTGGG 60.829 55.000 0.00 0.00 0.00 4.12
5450 7284 1.531602 GTGGCTTTGCTCCTTGGGT 60.532 57.895 0.00 0.00 0.00 4.51
5451 7285 1.228552 TGGCTTTGCTCCTTGGGTC 60.229 57.895 0.00 0.00 0.00 4.46
5452 7286 1.228552 GGCTTTGCTCCTTGGGTCA 60.229 57.895 0.00 0.00 0.00 4.02
5453 7287 0.827507 GGCTTTGCTCCTTGGGTCAA 60.828 55.000 0.00 0.00 0.00 3.18
5454 7288 1.039856 GCTTTGCTCCTTGGGTCAAA 58.960 50.000 0.00 6.91 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.773328 CACGATTGACATTTTCATATACAAGTT 57.227 29.630 0.00 0.00 32.84 2.66
87 88 7.910162 GCACGATTGACATTTTCATATACAAGT 59.090 33.333 0.00 0.00 32.84 3.16
88 89 7.110628 CGCACGATTGACATTTTCATATACAAG 59.889 37.037 0.00 0.00 32.84 3.16
89 90 6.904543 CGCACGATTGACATTTTCATATACAA 59.095 34.615 0.00 0.00 32.84 2.41
90 91 6.036626 ACGCACGATTGACATTTTCATATACA 59.963 34.615 0.00 0.00 32.84 2.29
91 92 6.418956 ACGCACGATTGACATTTTCATATAC 58.581 36.000 0.00 0.00 32.84 1.47
92 93 6.597262 ACGCACGATTGACATTTTCATATA 57.403 33.333 0.00 0.00 32.84 0.86
93 94 5.484173 ACGCACGATTGACATTTTCATAT 57.516 34.783 0.00 0.00 32.84 1.78
94 95 4.937696 ACGCACGATTGACATTTTCATA 57.062 36.364 0.00 0.00 32.84 2.15
95 96 3.829886 ACGCACGATTGACATTTTCAT 57.170 38.095 0.00 0.00 32.84 2.57
96 97 3.617540 AACGCACGATTGACATTTTCA 57.382 38.095 0.00 0.00 0.00 2.69
97 98 3.971871 TCAAACGCACGATTGACATTTTC 59.028 39.130 11.08 0.00 33.13 2.29
98 99 3.958704 TCAAACGCACGATTGACATTTT 58.041 36.364 11.08 0.00 33.13 1.82
99 100 3.617540 TCAAACGCACGATTGACATTT 57.382 38.095 11.08 0.00 33.13 2.32
100 101 3.617540 TTCAAACGCACGATTGACATT 57.382 38.095 14.17 0.00 36.80 2.71
101 102 3.617540 TTTCAAACGCACGATTGACAT 57.382 38.095 14.17 0.00 36.80 3.06
102 103 3.406728 TTTTCAAACGCACGATTGACA 57.593 38.095 14.17 6.53 36.80 3.58
222 223 8.914654 CGTTTTTGAATACATGATCAACACATT 58.085 29.630 0.00 0.00 35.42 2.71
223 224 8.081633 ACGTTTTTGAATACATGATCAACACAT 58.918 29.630 0.00 0.00 35.42 3.21
224 225 7.421599 ACGTTTTTGAATACATGATCAACACA 58.578 30.769 0.00 0.00 35.42 3.72
225 226 7.851822 ACGTTTTTGAATACATGATCAACAC 57.148 32.000 0.00 6.04 35.42 3.32
226 227 9.952188 TTAACGTTTTTGAATACATGATCAACA 57.048 25.926 5.91 0.00 35.42 3.33
231 232 9.787532 CCAGATTAACGTTTTTGAATACATGAT 57.212 29.630 5.91 0.00 0.00 2.45
232 233 8.788806 ACCAGATTAACGTTTTTGAATACATGA 58.211 29.630 5.91 0.00 0.00 3.07
233 234 8.964420 ACCAGATTAACGTTTTTGAATACATG 57.036 30.769 5.91 0.00 0.00 3.21
400 401 5.047943 TGGTTTTCTTTTGTTTTCACTCGGA 60.048 36.000 0.00 0.00 0.00 4.55
402 403 6.698359 TTGGTTTTCTTTTGTTTTCACTCG 57.302 33.333 0.00 0.00 0.00 4.18
541 544 9.068008 CGTTTCTCTCTCTGTTCTTACTATTTC 57.932 37.037 0.00 0.00 0.00 2.17
551 554 6.074034 CCTTTTCTTCGTTTCTCTCTCTGTTC 60.074 42.308 0.00 0.00 0.00 3.18
554 557 4.151512 GCCTTTTCTTCGTTTCTCTCTCTG 59.848 45.833 0.00 0.00 0.00 3.35
562 567 1.600485 TCACCGCCTTTTCTTCGTTTC 59.400 47.619 0.00 0.00 0.00 2.78
576 581 6.576551 TTGTTTTTCTTGTTTATTCACCGC 57.423 33.333 0.00 0.00 0.00 5.68
578 583 9.767684 CCTTTTTGTTTTTCTTGTTTATTCACC 57.232 29.630 0.00 0.00 0.00 4.02
588 593 6.809630 TTGGGTTCCTTTTTGTTTTTCTTG 57.190 33.333 0.00 0.00 0.00 3.02
597 602 5.106357 CCACAAGTTTTTGGGTTCCTTTTTG 60.106 40.000 0.00 0.00 35.89 2.44
603 608 3.449377 TCTTCCACAAGTTTTTGGGTTCC 59.551 43.478 1.19 0.00 35.89 3.62
606 611 2.764010 GGTCTTCCACAAGTTTTTGGGT 59.236 45.455 1.19 0.00 35.89 4.51
609 614 2.798145 GCCGGTCTTCCACAAGTTTTTG 60.798 50.000 1.90 0.00 40.24 2.44
621 626 2.077627 GAAGAAAAGGAGCCGGTCTTC 58.922 52.381 11.57 11.57 37.96 2.87
625 630 1.143073 AGTTGAAGAAAAGGAGCCGGT 59.857 47.619 1.90 0.00 0.00 5.28
633 639 4.621460 TGTCGCGATCTAGTTGAAGAAAAG 59.379 41.667 14.06 0.00 0.00 2.27
666 672 0.665369 GTCATCGTCCGGTTCACGTT 60.665 55.000 13.17 3.29 42.24 3.99
732 738 6.999272 AGAGAACAGTCCTATATCTCGCTTAA 59.001 38.462 0.00 0.00 41.04 1.85
764 785 3.680786 GGGCAACTTCAACCGGCC 61.681 66.667 0.00 0.00 43.86 6.13
769 790 1.179174 GGGTCCAGGGCAACTTCAAC 61.179 60.000 0.00 0.00 0.00 3.18
797 818 3.447742 GGCTGAAACTTGTGTTTGGAAG 58.552 45.455 0.00 0.00 45.36 3.46
825 846 3.462678 GAGAGGTCCGGTCCAGGC 61.463 72.222 20.28 8.63 0.00 4.85
826 847 1.755008 GAGAGAGGTCCGGTCCAGG 60.755 68.421 20.28 0.00 0.00 4.45
827 848 1.000771 TGAGAGAGGTCCGGTCCAG 60.001 63.158 20.28 0.00 0.00 3.86
828 849 1.000771 CTGAGAGAGGTCCGGTCCA 60.001 63.158 20.28 0.00 0.00 4.02
829 850 0.323542 TTCTGAGAGAGGTCCGGTCC 60.324 60.000 10.05 10.05 0.00 4.46
830 851 1.546961 TTTCTGAGAGAGGTCCGGTC 58.453 55.000 0.00 0.00 0.00 4.79
852 873 2.982488 TCCAGGGCTCTCTTTTTCTTCT 59.018 45.455 0.00 0.00 0.00 2.85
853 874 3.078097 GTCCAGGGCTCTCTTTTTCTTC 58.922 50.000 0.00 0.00 0.00 2.87
854 875 2.224892 GGTCCAGGGCTCTCTTTTTCTT 60.225 50.000 0.00 0.00 0.00 2.52
855 876 1.352687 GGTCCAGGGCTCTCTTTTTCT 59.647 52.381 0.00 0.00 0.00 2.52
856 877 1.827681 GGTCCAGGGCTCTCTTTTTC 58.172 55.000 0.00 0.00 0.00 2.29
1081 1121 1.299939 GGGGAAAGAGAGATGGGGTT 58.700 55.000 0.00 0.00 0.00 4.11
1090 1130 0.986550 GGGGGAATCGGGGAAAGAGA 60.987 60.000 0.00 0.00 0.00 3.10
1254 1308 2.064573 CCAAATCTGGGCGAAACAAC 57.935 50.000 0.00 0.00 39.30 3.32
1274 1328 3.084039 GTCATGGATTTGGAAGCAGTCA 58.916 45.455 0.00 0.00 0.00 3.41
1277 1331 2.426024 CTGGTCATGGATTTGGAAGCAG 59.574 50.000 0.00 0.00 0.00 4.24
1289 1343 3.634397 ATACACACTTCCTGGTCATGG 57.366 47.619 0.00 0.00 0.00 3.66
1323 1377 2.563471 ATTCCTAGTTGAGACGCGTC 57.437 50.000 31.30 31.30 0.00 5.19
1330 1384 4.378978 CGATCGGCTCTATTCCTAGTTGAG 60.379 50.000 7.38 0.00 0.00 3.02
1343 1416 0.669077 AATAACGCTCGATCGGCTCT 59.331 50.000 16.41 9.33 0.00 4.09
1360 1433 3.312146 TCACGCGATGCATGAATTACAAT 59.688 39.130 15.93 0.00 24.44 2.71
1366 1439 1.529865 CATCTCACGCGATGCATGAAT 59.470 47.619 15.93 0.00 34.92 2.57
1393 1466 4.318071 CGTCACACAAATCAATAAGCAACG 59.682 41.667 0.00 0.00 0.00 4.10
1473 1546 6.643770 CAGTTTTGCTTTCTGTTAATGCTGAT 59.356 34.615 0.00 0.00 0.00 2.90
1564 1637 9.730705 ATCTCACTATCATTCTTGACTTGAAAA 57.269 29.630 0.00 0.00 33.85 2.29
1579 1652 7.791029 TGGTTGTAATTAGCATCTCACTATCA 58.209 34.615 0.00 0.00 0.00 2.15
1603 1676 9.622004 GGATTTATGATATCAAGCAGACATTTG 57.378 33.333 9.99 0.00 0.00 2.32
1628 1701 5.361857 AGGCATTTATCACAAAATCTCCTGG 59.638 40.000 0.00 0.00 32.14 4.45
1706 1781 0.247460 GGAAGGAAAAGCCCACATGC 59.753 55.000 0.00 0.00 37.37 4.06
1713 1788 4.220602 TGCTTCAATTAGGAAGGAAAAGCC 59.779 41.667 7.44 0.00 41.44 4.35
1719 1794 7.549839 CAATGATTTGCTTCAATTAGGAAGGA 58.450 34.615 7.44 2.44 43.54 3.36
1720 1795 7.766219 CAATGATTTGCTTCAATTAGGAAGG 57.234 36.000 7.44 0.00 43.54 3.46
1749 1824 5.066505 GGGCACAATAGTACTTTCTTCATGG 59.933 44.000 0.00 0.00 0.00 3.66
1765 1840 6.664428 AACAAACTTAATAGTGGGCACAAT 57.336 33.333 0.00 0.00 34.01 2.71
1778 1853 7.411486 TTCATCCAGGAACAAACAAACTTAA 57.589 32.000 0.00 0.00 0.00 1.85
1867 1942 0.892814 GAGCAGAAGGCCACTTGCTT 60.893 55.000 23.24 11.36 46.50 3.91
1886 1961 9.533253 AAAATTAAGTGGTTTTCAGATGAAGTG 57.467 29.630 0.00 0.00 35.21 3.16
1928 2003 5.350091 GCAGTTTTCTAGATGAAGTCAGGAC 59.650 44.000 0.00 0.00 35.89 3.85
1984 2183 5.643777 AGTGTTGAGCTAATCACATACCAAC 59.356 40.000 13.70 7.63 37.77 3.77
2092 2291 3.063997 CCCAGAAGCTGCAGTATTTTACG 59.936 47.826 16.64 0.73 0.00 3.18
2114 2313 2.161855 TCAGATTTGGGACATGTGTGC 58.838 47.619 1.15 0.00 39.30 4.57
2117 2316 3.678289 TGACTCAGATTTGGGACATGTG 58.322 45.455 1.15 0.00 39.30 3.21
2118 2317 4.581309 ATGACTCAGATTTGGGACATGT 57.419 40.909 0.00 0.00 38.48 3.21
2186 2385 4.684193 CGAGTCATCGTGAAAATCTAGC 57.316 45.455 0.00 0.00 44.09 3.42
2199 2398 8.712363 TGCATATAAAAGCTTTATCGAGTCATC 58.288 33.333 13.10 0.00 0.00 2.92
2200 2399 8.607441 TGCATATAAAAGCTTTATCGAGTCAT 57.393 30.769 13.10 0.00 0.00 3.06
2226 2425 2.224185 TGATGTGCGGACAGTGTAGTTT 60.224 45.455 16.77 0.00 34.87 2.66
2244 2448 6.985653 AGTAGATAACACCAGCAGTATGAT 57.014 37.500 0.00 0.00 39.69 2.45
2445 2803 8.411683 AGATTCAAATATTTCATCTGGAAGTGC 58.588 33.333 14.68 3.79 36.72 4.40
2470 2828 9.517609 GATTTACGCACCTATATAACTATGGAG 57.482 37.037 0.00 0.00 0.00 3.86
2487 2845 1.553248 AGCTGTAGGGTGATTTACGCA 59.447 47.619 0.00 0.00 44.14 5.24
2488 2846 1.933853 CAGCTGTAGGGTGATTTACGC 59.066 52.381 5.25 0.00 45.36 4.42
2498 2856 2.290323 ACTAAAAGGCACAGCTGTAGGG 60.290 50.000 21.20 8.83 0.00 3.53
2500 2858 4.065088 TCAACTAAAAGGCACAGCTGTAG 58.935 43.478 21.20 13.91 0.00 2.74
2527 2885 4.103785 ACCCTCTATGCTGAATGTGCTATT 59.896 41.667 0.00 0.00 0.00 1.73
2550 2908 3.270027 CGTCATTTCCTAGCACAATGGA 58.730 45.455 6.83 0.00 0.00 3.41
2569 2927 5.130477 AGGTGATTTCCAATGGTATCTACGT 59.870 40.000 14.62 0.00 0.00 3.57
2592 2950 4.536364 TTTTCGAAGTTCTGCACAGAAG 57.464 40.909 13.21 2.59 46.93 2.85
2620 2978 3.597182 AGGTCAACCAAAATTTCCCCAT 58.403 40.909 1.33 0.00 38.89 4.00
2623 2981 6.653320 GGAAATAAGGTCAACCAAAATTTCCC 59.347 38.462 24.85 15.62 44.46 3.97
2629 2987 8.713708 TGATTAGGAAATAAGGTCAACCAAAA 57.286 30.769 1.33 0.00 38.89 2.44
2712 3964 6.313905 AGTCAATTAAGACGATCCATGACAAC 59.686 38.462 0.00 0.00 43.24 3.32
2830 4082 5.789521 TGACATGATGACCGTTAAAGAAGA 58.210 37.500 0.00 0.00 0.00 2.87
2873 4125 6.839124 ATCACATTTTTCAAGGCAGATACA 57.161 33.333 0.00 0.00 0.00 2.29
2874 4126 7.380602 GCATATCACATTTTTCAAGGCAGATAC 59.619 37.037 0.00 0.00 0.00 2.24
2875 4127 7.068470 TGCATATCACATTTTTCAAGGCAGATA 59.932 33.333 0.00 0.00 0.00 1.98
2876 4128 6.127281 TGCATATCACATTTTTCAAGGCAGAT 60.127 34.615 0.00 0.00 0.00 2.90
3039 4291 7.401080 CAAGTGCAAAGTTAAAAACCAATCTG 58.599 34.615 0.00 0.00 0.00 2.90
3040 4292 6.037062 GCAAGTGCAAAGTTAAAAACCAATCT 59.963 34.615 0.00 0.00 41.59 2.40
3083 4335 6.202570 GCATTTTTACAGTGATGGCTTTCAAA 59.797 34.615 0.00 0.00 0.00 2.69
3281 4536 0.249531 TTACGGTGAGCGCACAAGAA 60.250 50.000 22.36 9.26 46.96 2.52
3423 4683 4.040461 AGGTTGGGTCGAATATAGGTGATG 59.960 45.833 0.00 0.00 0.00 3.07
3542 4802 2.037053 CACCACAATGCCAACCGAA 58.963 52.632 0.00 0.00 0.00 4.30
3576 4836 6.183360 GGCTAGTCACCTACCACACATATTTA 60.183 42.308 0.00 0.00 0.00 1.40
3727 5270 5.048643 TGTCAAGAGAACAAACAAACGGAAA 60.049 36.000 0.00 0.00 0.00 3.13
3738 5281 5.304686 ACAAGGGTATGTCAAGAGAACAA 57.695 39.130 0.00 0.00 0.00 2.83
3753 5296 5.751586 TCACTTCAGAACTTTAACAAGGGT 58.248 37.500 0.00 0.00 33.82 4.34
3755 5298 6.693113 GCTTTCACTTCAGAACTTTAACAAGG 59.307 38.462 0.00 0.00 33.82 3.61
3770 5313 8.885494 ATGATAGAACTGATAGCTTTCACTTC 57.115 34.615 14.39 14.39 0.00 3.01
3794 5337 9.791801 ACCACTGGCAAAGAAATAAAATTTAAT 57.208 25.926 0.00 0.00 0.00 1.40
3805 5348 4.953579 AGTCTAAAACCACTGGCAAAGAAA 59.046 37.500 0.00 0.00 0.00 2.52
3806 5349 4.532834 AGTCTAAAACCACTGGCAAAGAA 58.467 39.130 0.00 0.00 0.00 2.52
3807 5350 4.164843 AGTCTAAAACCACTGGCAAAGA 57.835 40.909 0.00 0.00 0.00 2.52
3808 5351 5.940470 AGATAGTCTAAAACCACTGGCAAAG 59.060 40.000 0.00 0.00 0.00 2.77
3809 5352 5.876357 AGATAGTCTAAAACCACTGGCAAA 58.124 37.500 0.00 0.00 0.00 3.68
3810 5353 5.499004 AGATAGTCTAAAACCACTGGCAA 57.501 39.130 0.00 0.00 0.00 4.52
3811 5354 5.245531 CAAGATAGTCTAAAACCACTGGCA 58.754 41.667 0.00 0.00 0.00 4.92
3812 5355 4.095036 GCAAGATAGTCTAAAACCACTGGC 59.905 45.833 0.00 0.00 0.00 4.85
3813 5356 5.491982 AGCAAGATAGTCTAAAACCACTGG 58.508 41.667 0.00 0.00 0.00 4.00
3814 5357 6.128172 CCAAGCAAGATAGTCTAAAACCACTG 60.128 42.308 0.00 0.00 0.00 3.66
3815 5358 5.940470 CCAAGCAAGATAGTCTAAAACCACT 59.060 40.000 0.00 0.00 0.00 4.00
3816 5359 5.392057 GCCAAGCAAGATAGTCTAAAACCAC 60.392 44.000 0.00 0.00 0.00 4.16
3817 5360 4.700213 GCCAAGCAAGATAGTCTAAAACCA 59.300 41.667 0.00 0.00 0.00 3.67
3818 5361 4.096532 GGCCAAGCAAGATAGTCTAAAACC 59.903 45.833 0.00 0.00 0.00 3.27
3819 5362 4.700213 TGGCCAAGCAAGATAGTCTAAAAC 59.300 41.667 0.61 0.00 0.00 2.43
3820 5363 4.917385 TGGCCAAGCAAGATAGTCTAAAA 58.083 39.130 0.61 0.00 0.00 1.52
3821 5364 4.019321 ACTGGCCAAGCAAGATAGTCTAAA 60.019 41.667 7.01 0.00 33.12 1.85
3822 5365 3.519510 ACTGGCCAAGCAAGATAGTCTAA 59.480 43.478 7.01 0.00 33.12 2.10
3823 5366 3.107601 ACTGGCCAAGCAAGATAGTCTA 58.892 45.455 7.01 0.00 33.12 2.59
3824 5367 1.912043 ACTGGCCAAGCAAGATAGTCT 59.088 47.619 7.01 0.00 33.12 3.24
3825 5368 2.012673 CACTGGCCAAGCAAGATAGTC 58.987 52.381 7.01 0.00 33.12 2.59
3826 5369 1.352352 ACACTGGCCAAGCAAGATAGT 59.648 47.619 7.01 0.00 33.12 2.12
3827 5370 2.119801 ACACTGGCCAAGCAAGATAG 57.880 50.000 7.01 0.00 33.12 2.08
3828 5371 2.161855 CAACACTGGCCAAGCAAGATA 58.838 47.619 7.01 0.00 33.12 1.98
3829 5372 0.963962 CAACACTGGCCAAGCAAGAT 59.036 50.000 7.01 0.00 33.12 2.40
3830 5373 1.108727 CCAACACTGGCCAAGCAAGA 61.109 55.000 7.01 0.00 35.39 3.02
3831 5374 1.364901 CCAACACTGGCCAAGCAAG 59.635 57.895 7.01 0.00 35.39 4.01
3871 5415 8.954950 TCACAAATGCCAGAAAAGAATAAAAA 57.045 26.923 0.00 0.00 0.00 1.94
3872 5416 8.991026 CATCACAAATGCCAGAAAAGAATAAAA 58.009 29.630 0.00 0.00 0.00 1.52
3888 5432 1.548081 TGCTGACCCCATCACAAATG 58.452 50.000 0.00 0.00 32.37 2.32
3930 5474 5.533903 AGACCCATGAAATTATGATGCAGTC 59.466 40.000 0.00 0.00 0.00 3.51
3933 5477 5.698104 AGAGACCCATGAAATTATGATGCA 58.302 37.500 0.00 0.00 0.00 3.96
3973 5517 0.678950 AGCAACAACCATTTTCGGGG 59.321 50.000 0.00 0.00 0.00 5.73
3980 5524 4.215109 ACAAGTAGGAAGCAACAACCATT 58.785 39.130 0.00 0.00 0.00 3.16
3982 5526 3.290948 ACAAGTAGGAAGCAACAACCA 57.709 42.857 0.00 0.00 0.00 3.67
3983 5527 4.649088 AAACAAGTAGGAAGCAACAACC 57.351 40.909 0.00 0.00 0.00 3.77
4005 5549 9.140286 GCACATGATCGCTCTTATAACTATAAA 57.860 33.333 0.00 0.00 0.00 1.40
4024 5568 1.202639 ACCGAGACAAAGTGCACATGA 60.203 47.619 24.19 0.00 0.00 3.07
4026 5570 1.967319 AACCGAGACAAAGTGCACAT 58.033 45.000 21.04 3.48 0.00 3.21
4041 5585 5.175859 TCTCCACTTTTATCAGCTTAACCG 58.824 41.667 0.00 0.00 0.00 4.44
4048 5592 8.462016 ACAATACAATTCTCCACTTTTATCAGC 58.538 33.333 0.00 0.00 0.00 4.26
4196 5906 4.932200 AGCTTGATCCGTCTTAAACTTCAG 59.068 41.667 0.00 0.00 0.00 3.02
4246 5956 6.426633 TCATGAGAGCGAAAAAGATGTTGTTA 59.573 34.615 0.00 0.00 0.00 2.41
4297 6007 8.551205 CGCAATAGATATAGCAAAGAGAAACAA 58.449 33.333 0.00 0.00 0.00 2.83
4298 6008 7.710907 ACGCAATAGATATAGCAAAGAGAAACA 59.289 33.333 0.00 0.00 0.00 2.83
4308 6019 4.245660 GGCTTGACGCAATAGATATAGCA 58.754 43.478 0.00 0.00 41.67 3.49
4314 6025 0.179018 GGGGGCTTGACGCAATAGAT 60.179 55.000 0.00 0.00 41.67 1.98
4338 6049 3.119495 CGGGGATCCAAATCAGTGAAAAC 60.119 47.826 15.23 0.00 33.21 2.43
4347 6058 2.298610 GAAAGGTCGGGGATCCAAATC 58.701 52.381 15.23 0.00 0.00 2.17
4359 6070 2.280524 TGCACCACGGAAAGGTCG 60.281 61.111 0.00 0.00 37.23 4.79
4369 6080 1.528586 CGCTTATATCAGCTGCACCAC 59.471 52.381 9.47 0.00 37.68 4.16
4569 6281 6.145534 CGCACATTGTCTTAGAAAACTACTCA 59.854 38.462 0.00 0.00 0.00 3.41
4581 6293 1.006086 CGATGGCGCACATTGTCTTA 58.994 50.000 10.83 0.00 40.72 2.10
4609 6323 1.740718 GCGGTTTTGTGCCAGGAAAAA 60.741 47.619 0.00 0.00 0.00 1.94
4623 6337 2.407090 GGTAAGTGTACTTCGCGGTTT 58.593 47.619 6.13 0.00 37.40 3.27
4774 6492 6.205076 TGGATTCAAGAAAACATTTTGCCATG 59.795 34.615 0.00 0.00 0.00 3.66
4801 6519 2.679355 TGTGCAACGCATAAGTGTTC 57.321 45.000 0.00 0.00 46.11 3.18
4818 6536 4.559502 GTGCTCCCACAACAGTGT 57.440 55.556 0.00 0.00 41.67 3.55
4860 6578 4.742201 CCCACCGTCACTGCGAGG 62.742 72.222 0.00 0.00 0.00 4.63
4883 6601 4.337274 CCAGCTATCACTGCATCATCAAAA 59.663 41.667 0.00 0.00 36.29 2.44
4884 6602 3.881089 CCAGCTATCACTGCATCATCAAA 59.119 43.478 0.00 0.00 36.29 2.69
4885 6603 3.118149 ACCAGCTATCACTGCATCATCAA 60.118 43.478 0.00 0.00 36.29 2.57
4920 6748 3.566742 TGATGCGATGAATGAATCCAAGG 59.433 43.478 0.00 0.00 0.00 3.61
5007 6835 2.159653 GCTAAGACAGAACATGGCAACG 60.160 50.000 0.00 0.00 40.68 4.10
5124 6952 4.949856 TCTGCCAAACCTTTCCTATCATTC 59.050 41.667 0.00 0.00 0.00 2.67
5130 6958 2.647299 TGGATCTGCCAAACCTTTCCTA 59.353 45.455 0.00 0.00 45.87 2.94
5172 7001 6.533730 TGAGCCGATTTCAATGGAGTATATT 58.466 36.000 0.00 0.00 0.00 1.28
5176 7005 3.904800 TGAGCCGATTTCAATGGAGTA 57.095 42.857 0.00 0.00 0.00 2.59
5177 7006 2.787473 TGAGCCGATTTCAATGGAGT 57.213 45.000 0.00 0.00 0.00 3.85
5178 7007 4.644103 AATTGAGCCGATTTCAATGGAG 57.356 40.909 8.93 0.00 42.73 3.86
5179 7008 5.404466 AAAATTGAGCCGATTTCAATGGA 57.596 34.783 8.93 0.00 42.73 3.41
5180 7009 6.237542 CGTAAAAATTGAGCCGATTTCAATGG 60.238 38.462 8.93 0.00 42.73 3.16
5198 7027 4.650754 TGCCTTTTTAGCACCGTAAAAA 57.349 36.364 0.00 0.00 38.80 1.94
5205 7034 3.588955 CTCCAAATGCCTTTTTAGCACC 58.411 45.455 0.00 0.00 44.40 5.01
5211 7040 2.224354 CCTGTGCTCCAAATGCCTTTTT 60.224 45.455 0.00 0.00 0.00 1.94
5318 7152 4.276183 GGAAGAAAAGAAAGCTTCCGTCTT 59.724 41.667 0.00 2.33 45.62 3.01
5334 7168 0.323629 CACTACTGGGCGGGAAGAAA 59.676 55.000 0.00 0.00 0.00 2.52
5335 7169 0.834687 ACACTACTGGGCGGGAAGAA 60.835 55.000 0.00 0.00 0.00 2.52
5336 7170 1.229082 ACACTACTGGGCGGGAAGA 60.229 57.895 0.00 0.00 0.00 2.87
5337 7171 1.218316 GACACTACTGGGCGGGAAG 59.782 63.158 0.00 0.00 0.00 3.46
5338 7172 2.288025 GGACACTACTGGGCGGGAA 61.288 63.158 0.00 0.00 0.00 3.97
5339 7173 2.682494 GGACACTACTGGGCGGGA 60.682 66.667 0.00 0.00 0.00 5.14
5340 7174 2.291043 AAGGACACTACTGGGCGGG 61.291 63.158 0.00 0.00 0.00 6.13
5341 7175 1.079127 CAAGGACACTACTGGGCGG 60.079 63.158 0.00 0.00 0.00 6.13
5342 7176 0.389948 GTCAAGGACACTACTGGGCG 60.390 60.000 0.00 0.00 32.09 6.13
5343 7177 0.685097 TGTCAAGGACACTACTGGGC 59.315 55.000 0.00 0.00 37.67 5.36
5344 7178 1.338200 GCTGTCAAGGACACTACTGGG 60.338 57.143 0.00 0.00 37.67 4.45
5345 7179 1.344438 TGCTGTCAAGGACACTACTGG 59.656 52.381 0.00 0.00 37.67 4.00
5346 7180 2.820059 TGCTGTCAAGGACACTACTG 57.180 50.000 0.00 0.00 37.67 2.74
5347 7181 3.495100 CCTTTGCTGTCAAGGACACTACT 60.495 47.826 0.00 0.00 37.67 2.57
5348 7182 2.808543 CCTTTGCTGTCAAGGACACTAC 59.191 50.000 0.00 0.00 37.67 2.73
5349 7183 2.438021 ACCTTTGCTGTCAAGGACACTA 59.562 45.455 12.33 0.00 37.67 2.74
5350 7184 1.212935 ACCTTTGCTGTCAAGGACACT 59.787 47.619 12.33 0.00 37.67 3.55
5351 7185 1.680338 ACCTTTGCTGTCAAGGACAC 58.320 50.000 12.33 0.00 37.67 3.67
5352 7186 2.435372 AACCTTTGCTGTCAAGGACA 57.565 45.000 12.33 0.00 40.50 4.02
5353 7187 4.578928 TCTTTAACCTTTGCTGTCAAGGAC 59.421 41.667 12.33 0.00 31.65 3.85
5354 7188 4.787551 TCTTTAACCTTTGCTGTCAAGGA 58.212 39.130 12.33 0.00 31.65 3.36
5355 7189 4.557496 GCTCTTTAACCTTTGCTGTCAAGG 60.557 45.833 5.70 5.70 33.12 3.61
5356 7190 4.540824 GCTCTTTAACCTTTGCTGTCAAG 58.459 43.478 0.00 0.00 33.12 3.02
5357 7191 3.003275 CGCTCTTTAACCTTTGCTGTCAA 59.997 43.478 0.00 0.00 0.00 3.18
5358 7192 2.548057 CGCTCTTTAACCTTTGCTGTCA 59.452 45.455 0.00 0.00 0.00 3.58
5359 7193 2.548480 ACGCTCTTTAACCTTTGCTGTC 59.452 45.455 0.00 0.00 0.00 3.51
5360 7194 2.572290 ACGCTCTTTAACCTTTGCTGT 58.428 42.857 0.00 0.00 0.00 4.40
5361 7195 4.391830 TGATACGCTCTTTAACCTTTGCTG 59.608 41.667 0.00 0.00 0.00 4.41
5362 7196 4.575885 TGATACGCTCTTTAACCTTTGCT 58.424 39.130 0.00 0.00 0.00 3.91
5363 7197 4.939509 TGATACGCTCTTTAACCTTTGC 57.060 40.909 0.00 0.00 0.00 3.68
5366 7200 8.621286 CCATAATTTGATACGCTCTTTAACCTT 58.379 33.333 0.00 0.00 0.00 3.50
5367 7201 7.255139 GCCATAATTTGATACGCTCTTTAACCT 60.255 37.037 0.00 0.00 0.00 3.50
5368 7202 6.856426 GCCATAATTTGATACGCTCTTTAACC 59.144 38.462 0.00 0.00 0.00 2.85
5369 7203 6.856426 GGCCATAATTTGATACGCTCTTTAAC 59.144 38.462 0.00 0.00 0.00 2.01
5370 7204 6.544197 TGGCCATAATTTGATACGCTCTTTAA 59.456 34.615 0.00 0.00 0.00 1.52
5371 7205 6.058833 TGGCCATAATTTGATACGCTCTTTA 58.941 36.000 0.00 0.00 0.00 1.85
5372 7206 4.887071 TGGCCATAATTTGATACGCTCTTT 59.113 37.500 0.00 0.00 0.00 2.52
5373 7207 4.460263 TGGCCATAATTTGATACGCTCTT 58.540 39.130 0.00 0.00 0.00 2.85
5374 7208 4.085357 TGGCCATAATTTGATACGCTCT 57.915 40.909 0.00 0.00 0.00 4.09
5375 7209 5.376854 AATGGCCATAATTTGATACGCTC 57.623 39.130 21.15 0.00 0.00 5.03
5376 7210 4.083324 CGAATGGCCATAATTTGATACGCT 60.083 41.667 21.15 0.00 0.00 5.07
5377 7211 4.083537 TCGAATGGCCATAATTTGATACGC 60.084 41.667 21.15 0.00 0.00 4.42
5378 7212 5.605564 TCGAATGGCCATAATTTGATACG 57.394 39.130 21.15 12.88 0.00 3.06
5379 7213 7.370383 ACAATCGAATGGCCATAATTTGATAC 58.630 34.615 21.15 1.72 37.22 2.24
5380 7214 7.523293 ACAATCGAATGGCCATAATTTGATA 57.477 32.000 21.15 0.00 37.22 2.15
5381 7215 6.409524 ACAATCGAATGGCCATAATTTGAT 57.590 33.333 21.15 16.03 39.02 2.57
5382 7216 5.830912 GACAATCGAATGGCCATAATTTGA 58.169 37.500 21.15 14.31 33.10 2.69
5391 7225 1.819632 AGCGGACAATCGAATGGCC 60.820 57.895 15.98 15.98 45.74 5.36
5392 7226 1.353103 CAGCGGACAATCGAATGGC 59.647 57.895 5.30 0.53 0.00 4.40
5393 7227 0.461870 TCCAGCGGACAATCGAATGG 60.462 55.000 5.30 0.00 38.80 3.16
5394 7228 1.528586 GATCCAGCGGACAATCGAATG 59.471 52.381 0.00 0.00 32.98 2.67
5395 7229 1.138859 TGATCCAGCGGACAATCGAAT 59.861 47.619 0.00 0.00 32.98 3.34
5396 7230 0.534873 TGATCCAGCGGACAATCGAA 59.465 50.000 0.00 0.00 32.98 3.71
5397 7231 0.103026 CTGATCCAGCGGACAATCGA 59.897 55.000 0.00 0.00 32.98 3.59
5398 7232 2.598045 CTGATCCAGCGGACAATCG 58.402 57.895 0.00 0.00 32.98 3.34
5408 7242 6.320672 ACTTTCTTTATCCAATGCTGATCCAG 59.679 38.462 0.00 0.00 34.12 3.86
5409 7243 6.095860 CACTTTCTTTATCCAATGCTGATCCA 59.904 38.462 0.00 0.00 0.00 3.41
5410 7244 6.460676 CCACTTTCTTTATCCAATGCTGATCC 60.461 42.308 0.00 0.00 0.00 3.36
5411 7245 6.501781 CCACTTTCTTTATCCAATGCTGATC 58.498 40.000 0.00 0.00 0.00 2.92
5412 7246 5.163478 GCCACTTTCTTTATCCAATGCTGAT 60.163 40.000 0.00 0.00 0.00 2.90
5413 7247 4.158394 GCCACTTTCTTTATCCAATGCTGA 59.842 41.667 0.00 0.00 0.00 4.26
5414 7248 4.159135 AGCCACTTTCTTTATCCAATGCTG 59.841 41.667 0.00 0.00 0.00 4.41
5415 7249 4.347607 AGCCACTTTCTTTATCCAATGCT 58.652 39.130 0.00 0.00 0.00 3.79
5416 7250 4.725790 AGCCACTTTCTTTATCCAATGC 57.274 40.909 0.00 0.00 0.00 3.56
5417 7251 5.349543 GCAAAGCCACTTTCTTTATCCAATG 59.650 40.000 0.00 0.00 30.60 2.82
5418 7252 5.246883 AGCAAAGCCACTTTCTTTATCCAAT 59.753 36.000 0.00 0.00 30.60 3.16
5419 7253 4.588528 AGCAAAGCCACTTTCTTTATCCAA 59.411 37.500 0.00 0.00 30.60 3.53
5420 7254 4.151883 AGCAAAGCCACTTTCTTTATCCA 58.848 39.130 0.00 0.00 30.60 3.41
5421 7255 4.380973 GGAGCAAAGCCACTTTCTTTATCC 60.381 45.833 0.00 0.00 34.41 2.59
5422 7256 4.460731 AGGAGCAAAGCCACTTTCTTTATC 59.539 41.667 0.00 0.00 30.60 1.75
5423 7257 4.411013 AGGAGCAAAGCCACTTTCTTTAT 58.589 39.130 0.00 0.00 30.60 1.40
5424 7258 3.832527 AGGAGCAAAGCCACTTTCTTTA 58.167 40.909 0.00 0.00 30.60 1.85
5425 7259 2.670939 AGGAGCAAAGCCACTTTCTTT 58.329 42.857 0.00 0.00 30.60 2.52
5426 7260 2.363359 CAAGGAGCAAAGCCACTTTCTT 59.637 45.455 0.00 0.00 30.60 2.52
5427 7261 1.959282 CAAGGAGCAAAGCCACTTTCT 59.041 47.619 0.00 0.00 30.60 2.52
5428 7262 1.000171 CCAAGGAGCAAAGCCACTTTC 60.000 52.381 0.00 0.00 30.60 2.62
5429 7263 1.043022 CCAAGGAGCAAAGCCACTTT 58.957 50.000 0.00 0.00 33.58 2.66
5430 7264 0.829182 CCCAAGGAGCAAAGCCACTT 60.829 55.000 0.00 0.00 0.00 3.16
5431 7265 1.228675 CCCAAGGAGCAAAGCCACT 60.229 57.895 0.00 0.00 0.00 4.00
5432 7266 1.527433 GACCCAAGGAGCAAAGCCAC 61.527 60.000 0.00 0.00 0.00 5.01
5433 7267 1.228552 GACCCAAGGAGCAAAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
5434 7268 0.827507 TTGACCCAAGGAGCAAAGCC 60.828 55.000 0.00 0.00 0.00 4.35
5435 7269 1.039856 TTTGACCCAAGGAGCAAAGC 58.960 50.000 0.00 0.00 31.40 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.