Multiple sequence alignment - TraesCS7B01G111700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G111700 chr7B 100.000 6075 0 0 1 6075 128309845 128303771 0.000000e+00 11219
1 TraesCS7B01G111700 chr7B 94.453 649 36 0 1 649 526719261 526718613 0.000000e+00 1000
2 TraesCS7B01G111700 chr7B 95.724 304 13 0 3723 4026 529283490 529283793 1.970000e-134 490
3 TraesCS7B01G111700 chr7B 95.130 308 14 1 3727 4033 121051997 121051690 9.150000e-133 484
4 TraesCS7B01G111700 chr7D 90.167 2095 107 46 4025 6064 164872131 164870081 0.000000e+00 2636
5 TraesCS7B01G111700 chr7D 94.034 1190 39 13 649 1826 164875241 164874072 0.000000e+00 1775
6 TraesCS7B01G111700 chr7D 89.108 863 62 20 2636 3477 164873198 164872347 0.000000e+00 1044
7 TraesCS7B01G111700 chr7D 92.627 651 20 14 1921 2554 164873854 164873215 0.000000e+00 911
8 TraesCS7B01G111700 chr7D 89.451 237 11 8 3494 3725 164872362 164872135 2.770000e-73 287
9 TraesCS7B01G111700 chr7A 86.366 2127 143 81 4032 6064 166749458 166747385 0.000000e+00 2185
10 TraesCS7B01G111700 chr7A 84.060 872 70 34 2646 3477 166750725 166749883 0.000000e+00 776
11 TraesCS7B01G111700 chr7A 95.842 481 9 5 1353 1824 166752021 166751543 0.000000e+00 767
12 TraesCS7B01G111700 chr7A 87.865 651 38 21 649 1274 166752648 166752014 0.000000e+00 726
13 TraesCS7B01G111700 chr7A 85.922 689 43 24 1905 2557 166751400 166750730 0.000000e+00 686
14 TraesCS7B01G111700 chr7A 83.730 252 20 12 3494 3729 166749898 166749652 1.030000e-52 219
15 TraesCS7B01G111700 chr7A 75.000 400 87 12 1366 1757 457867081 457866687 8.100000e-39 172
16 TraesCS7B01G111700 chr1B 95.069 649 31 1 1 649 515910683 515910036 0.000000e+00 1020
17 TraesCS7B01G111700 chr1B 94.009 651 36 2 1 649 480753594 480752945 0.000000e+00 983
18 TraesCS7B01G111700 chr1B 93.721 653 39 1 1 651 573755787 573755135 0.000000e+00 977
19 TraesCS7B01G111700 chr1B 93.056 72 5 0 1351 1422 119774469 119774398 8.330000e-19 106
20 TraesCS7B01G111700 chr3B 94.624 651 35 0 1 651 436745193 436744543 0.000000e+00 1009
21 TraesCS7B01G111700 chr3B 94.009 651 37 1 1 649 752346357 752345707 0.000000e+00 985
22 TraesCS7B01G111700 chr3B 93.865 652 37 2 1 649 179352564 179351913 0.000000e+00 979
23 TraesCS7B01G111700 chr3B 81.303 353 37 15 1406 1755 683391225 683390899 6.040000e-65 259
24 TraesCS7B01G111700 chr5B 94.299 649 35 2 1 649 400778998 400778352 0.000000e+00 992
25 TraesCS7B01G111700 chr5B 93.721 653 39 1 1 651 587111941 587112593 0.000000e+00 977
26 TraesCS7B01G111700 chr6A 84.012 688 84 20 1104 1776 529018833 529019509 6.640000e-179 638
27 TraesCS7B01G111700 chr6A 87.349 332 40 2 4590 4920 529021791 529022121 4.440000e-101 379
28 TraesCS7B01G111700 chr6A 91.538 260 22 0 1923 2182 529019572 529019831 5.790000e-95 359
29 TraesCS7B01G111700 chr6B 83.138 682 79 27 1104 1766 574715064 574715728 1.890000e-164 590
30 TraesCS7B01G111700 chr6B 97.659 299 7 0 3728 4026 482911362 482911660 1.170000e-141 514
31 TraesCS7B01G111700 chr6B 96.644 298 9 1 3728 4025 34148191 34147895 1.520000e-135 494
32 TraesCS7B01G111700 chr6B 95.765 307 12 1 3720 4026 483022461 483022766 1.520000e-135 494
33 TraesCS7B01G111700 chr6B 96.333 300 11 0 3728 4027 538068037 538067738 1.520000e-135 494
34 TraesCS7B01G111700 chr6B 96.013 301 12 0 3728 4028 454462984 454463284 1.970000e-134 490
35 TraesCS7B01G111700 chr6B 95.667 300 13 0 3724 4023 348923125 348923424 3.290000e-132 483
36 TraesCS7B01G111700 chr6B 87.651 332 39 2 4590 4920 574717201 574717531 9.550000e-103 385
37 TraesCS7B01G111700 chr6B 92.308 260 20 0 1923 2182 574715807 574716066 2.670000e-98 370
38 TraesCS7B01G111700 chr6D 89.786 421 42 1 1347 1766 384439123 384439543 6.930000e-149 538
39 TraesCS7B01G111700 chr6D 87.952 332 38 2 4590 4920 384440955 384441285 2.050000e-104 390
40 TraesCS7B01G111700 chr6D 91.538 260 22 0 1923 2182 384439633 384439892 5.790000e-95 359
41 TraesCS7B01G111700 chr6D 73.740 377 77 20 1351 1713 426336332 426336700 1.780000e-25 128
42 TraesCS7B01G111700 chr2B 96.622 296 10 0 3728 4023 465262144 465261849 5.470000e-135 492
43 TraesCS7B01G111700 chr1D 74.731 372 68 21 1350 1705 56530531 56530170 6.350000e-30 143
44 TraesCS7B01G111700 chr1D 93.056 72 5 0 1351 1422 76458353 76458282 8.330000e-19 106
45 TraesCS7B01G111700 chr1A 75.224 335 60 20 1097 1420 541770373 541770695 2.950000e-28 137
46 TraesCS7B01G111700 chr1A 93.056 72 5 0 1351 1422 77075855 77075784 8.330000e-19 106
47 TraesCS7B01G111700 chr3D 82.353 136 15 6 1406 1538 519070287 519070158 6.440000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G111700 chr7B 128303771 128309845 6074 True 11219.000000 11219 100.000000 1 6075 1 chr7B.!!$R2 6074
1 TraesCS7B01G111700 chr7B 526718613 526719261 648 True 1000.000000 1000 94.453000 1 649 1 chr7B.!!$R3 648
2 TraesCS7B01G111700 chr7D 164870081 164875241 5160 True 1330.600000 2636 91.077400 649 6064 5 chr7D.!!$R1 5415
3 TraesCS7B01G111700 chr7A 166747385 166752648 5263 True 893.166667 2185 87.297500 649 6064 6 chr7A.!!$R2 5415
4 TraesCS7B01G111700 chr1B 515910036 515910683 647 True 1020.000000 1020 95.069000 1 649 1 chr1B.!!$R3 648
5 TraesCS7B01G111700 chr1B 480752945 480753594 649 True 983.000000 983 94.009000 1 649 1 chr1B.!!$R2 648
6 TraesCS7B01G111700 chr1B 573755135 573755787 652 True 977.000000 977 93.721000 1 651 1 chr1B.!!$R4 650
7 TraesCS7B01G111700 chr3B 436744543 436745193 650 True 1009.000000 1009 94.624000 1 651 1 chr3B.!!$R2 650
8 TraesCS7B01G111700 chr3B 752345707 752346357 650 True 985.000000 985 94.009000 1 649 1 chr3B.!!$R4 648
9 TraesCS7B01G111700 chr3B 179351913 179352564 651 True 979.000000 979 93.865000 1 649 1 chr3B.!!$R1 648
10 TraesCS7B01G111700 chr5B 400778352 400778998 646 True 992.000000 992 94.299000 1 649 1 chr5B.!!$R1 648
11 TraesCS7B01G111700 chr5B 587111941 587112593 652 False 977.000000 977 93.721000 1 651 1 chr5B.!!$F1 650
12 TraesCS7B01G111700 chr6A 529018833 529022121 3288 False 458.666667 638 87.633000 1104 4920 3 chr6A.!!$F1 3816
13 TraesCS7B01G111700 chr6B 574715064 574717531 2467 False 448.333333 590 87.699000 1104 4920 3 chr6B.!!$F5 3816
14 TraesCS7B01G111700 chr6D 384439123 384441285 2162 False 429.000000 538 89.758667 1347 4920 3 chr6D.!!$F2 3573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 593 0.106719 CACGCCCCCAAATCCATACT 60.107 55.0 0.00 0.00 0.00 2.12 F
678 684 0.322546 GGTCCCTCGACAGGCATTTT 60.323 55.0 0.00 0.00 41.13 1.82 F
2459 2693 0.250513 GGATTCTCCCTGCTCGTGTT 59.749 55.0 0.00 0.00 0.00 3.32 F
2622 2871 0.107312 AGTCTGTGCATGCCATCCTC 60.107 55.0 16.68 1.54 0.00 3.71 F
3905 4594 0.034756 AACACGACATGCAGTGGCTA 59.965 50.0 20.60 0.00 42.25 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2123 0.234884 CGCGAACTCAAACACCTTCC 59.765 55.0 0.00 0.00 0.00 3.46 R
2603 2852 0.107312 GAGGATGGCATGCACAGACT 60.107 55.0 21.36 15.53 0.00 3.24 R
3886 4575 0.034756 TAGCCACTGCATGTCGTGTT 59.965 50.0 13.12 6.12 41.13 3.32 R
4001 5117 0.256464 CTCCCTCCGTCTAGGTGAGT 59.744 60.0 0.00 0.00 41.99 3.41 R
5262 6441 0.101219 GAAGGCGGCCATTAGCAAAG 59.899 55.0 23.09 0.00 46.50 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 0.675083 TCGTTCGAAACCCTGCACTA 59.325 50.000 0.00 0.00 0.00 2.74
190 191 5.506317 CGACCAAGGATTTGATTATCAAGGC 60.506 44.000 7.72 4.51 37.70 4.35
247 249 5.066246 CACATTTGAACAGTTTGCCCAATTT 59.934 36.000 0.00 0.00 0.00 1.82
381 386 5.527951 TCAAGACAATTTCGATTTGGTTGG 58.472 37.500 16.95 5.27 0.00 3.77
587 593 0.106719 CACGCCCCCAAATCCATACT 60.107 55.000 0.00 0.00 0.00 2.12
655 661 4.246458 GCGATGGAGTTGGTCTTATATCC 58.754 47.826 0.00 0.00 0.00 2.59
656 662 4.486090 CGATGGAGTTGGTCTTATATCCG 58.514 47.826 0.00 0.00 0.00 4.18
665 671 2.512705 GTCTTATATCCGTCGGTCCCT 58.487 52.381 11.88 0.00 0.00 4.20
666 672 2.487372 GTCTTATATCCGTCGGTCCCTC 59.513 54.545 11.88 0.00 0.00 4.30
678 684 0.322546 GGTCCCTCGACAGGCATTTT 60.323 55.000 0.00 0.00 41.13 1.82
759 765 0.397941 AGCAGCTACAGCAACCTTCA 59.602 50.000 3.70 0.00 45.16 3.02
961 979 1.702957 TGCCCTCCCCTATTAAATCCG 59.297 52.381 0.00 0.00 0.00 4.18
1283 1319 0.984230 GGGTGAGACCAATGACCTCA 59.016 55.000 0.00 0.00 41.02 3.86
1299 1335 2.038659 CCTCACCATCTCCTCTTCCTC 58.961 57.143 0.00 0.00 0.00 3.71
1323 1359 1.064505 CCTGCTATGCATTGGTCGTTG 59.935 52.381 3.54 0.00 38.13 4.10
1327 1363 2.094752 GCTATGCATTGGTCGTTGGTTT 60.095 45.455 3.54 0.00 0.00 3.27
1330 1366 1.336440 TGCATTGGTCGTTGGTTTGAG 59.664 47.619 0.00 0.00 0.00 3.02
1331 1367 1.336755 GCATTGGTCGTTGGTTTGAGT 59.663 47.619 0.00 0.00 0.00 3.41
1332 1368 2.550606 GCATTGGTCGTTGGTTTGAGTA 59.449 45.455 0.00 0.00 0.00 2.59
1333 1369 3.003897 GCATTGGTCGTTGGTTTGAGTAA 59.996 43.478 0.00 0.00 0.00 2.24
1776 1826 4.767409 CCATCTCCGTAAGATATCCACTCA 59.233 45.833 0.00 0.00 43.13 3.41
1805 1862 4.033129 CCATTTTCCGTTCGCTCGTAAATA 59.967 41.667 0.00 0.00 0.00 1.40
1829 1886 2.058057 GTGCATTAAAGCCGGTGTTTG 58.942 47.619 1.90 0.00 0.00 2.93
1830 1887 1.683917 TGCATTAAAGCCGGTGTTTGT 59.316 42.857 1.90 0.00 0.00 2.83
1833 1890 3.712187 CATTAAAGCCGGTGTTTGTGTT 58.288 40.909 1.90 0.00 0.00 3.32
1834 1891 4.793353 GCATTAAAGCCGGTGTTTGTGTTA 60.793 41.667 1.90 0.00 0.00 2.41
1835 1892 5.465935 CATTAAAGCCGGTGTTTGTGTTAT 58.534 37.500 1.90 0.00 0.00 1.89
1837 1894 4.394439 AAAGCCGGTGTTTGTGTTATTT 57.606 36.364 1.90 0.00 0.00 1.40
1838 1895 4.394439 AAGCCGGTGTTTGTGTTATTTT 57.606 36.364 1.90 0.00 0.00 1.82
1839 1896 4.394439 AGCCGGTGTTTGTGTTATTTTT 57.606 36.364 1.90 0.00 0.00 1.94
1841 1898 3.866327 GCCGGTGTTTGTGTTATTTTTGT 59.134 39.130 1.90 0.00 0.00 2.83
1842 1899 4.260011 GCCGGTGTTTGTGTTATTTTTGTG 60.260 41.667 1.90 0.00 0.00 3.33
1843 1900 4.865365 CCGGTGTTTGTGTTATTTTTGTGT 59.135 37.500 0.00 0.00 0.00 3.72
1844 1901 5.348997 CCGGTGTTTGTGTTATTTTTGTGTT 59.651 36.000 0.00 0.00 0.00 3.32
1845 1902 6.530534 CCGGTGTTTGTGTTATTTTTGTGTTA 59.469 34.615 0.00 0.00 0.00 2.41
1846 1903 7.222999 CCGGTGTTTGTGTTATTTTTGTGTTAT 59.777 33.333 0.00 0.00 0.00 1.89
1899 2103 0.748005 AGCTTGGCTCGTGTGTTTGT 60.748 50.000 0.00 0.00 30.62 2.83
1903 2107 2.025589 TGGCTCGTGTGTTTGTGTTA 57.974 45.000 0.00 0.00 0.00 2.41
1904 2108 2.566913 TGGCTCGTGTGTTTGTGTTAT 58.433 42.857 0.00 0.00 0.00 1.89
1905 2109 2.946329 TGGCTCGTGTGTTTGTGTTATT 59.054 40.909 0.00 0.00 0.00 1.40
1906 2110 3.378742 TGGCTCGTGTGTTTGTGTTATTT 59.621 39.130 0.00 0.00 0.00 1.40
1908 2112 4.801516 GGCTCGTGTGTTTGTGTTATTTTT 59.198 37.500 0.00 0.00 0.00 1.94
1909 2113 5.276161 GGCTCGTGTGTTTGTGTTATTTTTG 60.276 40.000 0.00 0.00 0.00 2.44
1910 2114 5.276161 GCTCGTGTGTTTGTGTTATTTTTGG 60.276 40.000 0.00 0.00 0.00 3.28
1911 2115 5.103000 TCGTGTGTTTGTGTTATTTTTGGG 58.897 37.500 0.00 0.00 0.00 4.12
1912 2116 4.865365 CGTGTGTTTGTGTTATTTTTGGGT 59.135 37.500 0.00 0.00 0.00 4.51
1913 2117 5.220303 CGTGTGTTTGTGTTATTTTTGGGTG 60.220 40.000 0.00 0.00 0.00 4.61
1914 2118 5.064071 GTGTGTTTGTGTTATTTTTGGGTGG 59.936 40.000 0.00 0.00 0.00 4.61
1915 2119 5.179533 GTGTTTGTGTTATTTTTGGGTGGT 58.820 37.500 0.00 0.00 0.00 4.16
1916 2120 5.064071 GTGTTTGTGTTATTTTTGGGTGGTG 59.936 40.000 0.00 0.00 0.00 4.17
1917 2121 5.179533 GTTTGTGTTATTTTTGGGTGGTGT 58.820 37.500 0.00 0.00 0.00 4.16
1918 2122 5.422214 TTGTGTTATTTTTGGGTGGTGTT 57.578 34.783 0.00 0.00 0.00 3.32
1919 2123 4.759782 TGTGTTATTTTTGGGTGGTGTTG 58.240 39.130 0.00 0.00 0.00 3.33
2194 2400 5.994250 TCTCCAAGGTAATCCTCATTTCTG 58.006 41.667 0.00 0.00 44.35 3.02
2197 2403 5.428457 TCCAAGGTAATCCTCATTTCTGCTA 59.572 40.000 0.00 0.00 44.35 3.49
2208 2414 7.803131 TCCTCATTTCTGCTACTACTCTACTA 58.197 38.462 0.00 0.00 0.00 1.82
2264 2487 3.276857 TGTTGACTAGAGTAGGGTAGCG 58.723 50.000 0.00 0.00 0.00 4.26
2280 2503 2.943978 GCGCTCCACTACCACCACT 61.944 63.158 0.00 0.00 0.00 4.00
2281 2504 1.079819 CGCTCCACTACCACCACTG 60.080 63.158 0.00 0.00 0.00 3.66
2282 2505 1.816863 CGCTCCACTACCACCACTGT 61.817 60.000 0.00 0.00 0.00 3.55
2283 2506 1.263356 GCTCCACTACCACCACTGTA 58.737 55.000 0.00 0.00 0.00 2.74
2284 2507 1.067071 GCTCCACTACCACCACTGTAC 60.067 57.143 0.00 0.00 0.00 2.90
2291 2514 3.503748 ACTACCACCACTGTACGTACTTC 59.496 47.826 25.12 0.83 0.00 3.01
2440 2674 0.439985 CTTCTCGTGTGTCATTGCGG 59.560 55.000 0.00 0.00 0.00 5.69
2447 2681 1.398390 GTGTGTCATTGCGGGATTCTC 59.602 52.381 0.00 0.00 0.00 2.87
2458 2692 1.901085 GGATTCTCCCTGCTCGTGT 59.099 57.895 0.00 0.00 0.00 4.49
2459 2693 0.250513 GGATTCTCCCTGCTCGTGTT 59.749 55.000 0.00 0.00 0.00 3.32
2473 2707 1.282875 GTGTTCTGCTCGGTTTGCC 59.717 57.895 0.00 0.00 0.00 4.52
2558 2807 0.601057 CCCGCCCTTTTTGTTACCTG 59.399 55.000 0.00 0.00 0.00 4.00
2561 2810 1.601914 CGCCCTTTTTGTTACCTGTGC 60.602 52.381 0.00 0.00 0.00 4.57
2562 2811 1.686587 GCCCTTTTTGTTACCTGTGCT 59.313 47.619 0.00 0.00 0.00 4.40
2563 2812 2.888414 GCCCTTTTTGTTACCTGTGCTA 59.112 45.455 0.00 0.00 0.00 3.49
2565 2814 4.142038 CCCTTTTTGTTACCTGTGCTAGT 58.858 43.478 0.00 0.00 0.00 2.57
2566 2815 4.583073 CCCTTTTTGTTACCTGTGCTAGTT 59.417 41.667 0.00 0.00 0.00 2.24
2568 2817 6.406512 CCCTTTTTGTTACCTGTGCTAGTTTT 60.407 38.462 0.00 0.00 0.00 2.43
2569 2818 7.039270 CCTTTTTGTTACCTGTGCTAGTTTTT 58.961 34.615 0.00 0.00 0.00 1.94
2570 2819 7.222031 CCTTTTTGTTACCTGTGCTAGTTTTTC 59.778 37.037 0.00 0.00 0.00 2.29
2571 2820 7.399245 TTTTGTTACCTGTGCTAGTTTTTCT 57.601 32.000 0.00 0.00 0.00 2.52
2572 2821 7.399245 TTTGTTACCTGTGCTAGTTTTTCTT 57.601 32.000 0.00 0.00 0.00 2.52
2573 2822 7.399245 TTGTTACCTGTGCTAGTTTTTCTTT 57.601 32.000 0.00 0.00 0.00 2.52
2574 2823 7.399245 TGTTACCTGTGCTAGTTTTTCTTTT 57.601 32.000 0.00 0.00 0.00 2.27
2575 2824 7.477494 TGTTACCTGTGCTAGTTTTTCTTTTC 58.523 34.615 0.00 0.00 0.00 2.29
2576 2825 7.121463 TGTTACCTGTGCTAGTTTTTCTTTTCA 59.879 33.333 0.00 0.00 0.00 2.69
2577 2826 6.715347 ACCTGTGCTAGTTTTTCTTTTCAT 57.285 33.333 0.00 0.00 0.00 2.57
2578 2827 7.112452 ACCTGTGCTAGTTTTTCTTTTCATT 57.888 32.000 0.00 0.00 0.00 2.57
2579 2828 7.555965 ACCTGTGCTAGTTTTTCTTTTCATTT 58.444 30.769 0.00 0.00 0.00 2.32
2580 2829 7.706607 ACCTGTGCTAGTTTTTCTTTTCATTTC 59.293 33.333 0.00 0.00 0.00 2.17
2581 2830 7.096477 CCTGTGCTAGTTTTTCTTTTCATTTCG 60.096 37.037 0.00 0.00 0.00 3.46
2582 2831 6.695278 TGTGCTAGTTTTTCTTTTCATTTCGG 59.305 34.615 0.00 0.00 0.00 4.30
2583 2832 6.695713 GTGCTAGTTTTTCTTTTCATTTCGGT 59.304 34.615 0.00 0.00 0.00 4.69
2584 2833 6.695278 TGCTAGTTTTTCTTTTCATTTCGGTG 59.305 34.615 0.00 0.00 0.00 4.94
2585 2834 6.143919 GCTAGTTTTTCTTTTCATTTCGGTGG 59.856 38.462 0.00 0.00 0.00 4.61
2586 2835 4.808895 AGTTTTTCTTTTCATTTCGGTGGC 59.191 37.500 0.00 0.00 0.00 5.01
2587 2836 3.378911 TTTCTTTTCATTTCGGTGGCC 57.621 42.857 0.00 0.00 0.00 5.36
2604 2853 4.531912 CGCAGCGAGCAATGGCAG 62.532 66.667 9.98 0.00 46.13 4.85
2605 2854 3.437795 GCAGCGAGCAATGGCAGT 61.438 61.111 0.00 0.00 44.61 4.40
2606 2855 2.789917 CAGCGAGCAATGGCAGTC 59.210 61.111 0.00 0.00 44.61 3.51
2607 2856 1.744368 CAGCGAGCAATGGCAGTCT 60.744 57.895 0.00 0.00 44.61 3.24
2608 2857 1.744368 AGCGAGCAATGGCAGTCTG 60.744 57.895 0.00 0.00 44.61 3.51
2609 2858 2.037136 GCGAGCAATGGCAGTCTGT 61.037 57.895 0.93 0.00 44.61 3.41
2610 2859 1.792301 CGAGCAATGGCAGTCTGTG 59.208 57.895 0.93 0.00 44.61 3.66
2620 2869 2.104267 CAGTCTGTGCATGCCATCC 58.896 57.895 16.68 6.23 0.00 3.51
2621 2870 0.393944 CAGTCTGTGCATGCCATCCT 60.394 55.000 16.68 8.27 0.00 3.24
2622 2871 0.107312 AGTCTGTGCATGCCATCCTC 60.107 55.000 16.68 1.54 0.00 3.71
2623 2872 0.393402 GTCTGTGCATGCCATCCTCA 60.393 55.000 16.68 4.17 0.00 3.86
2624 2873 0.393402 TCTGTGCATGCCATCCTCAC 60.393 55.000 16.68 5.10 0.00 3.51
2625 2874 0.678684 CTGTGCATGCCATCCTCACA 60.679 55.000 16.68 9.87 36.40 3.58
2626 2875 0.251253 TGTGCATGCCATCCTCACAA 60.251 50.000 16.68 0.00 35.08 3.33
2627 2876 1.108776 GTGCATGCCATCCTCACAAT 58.891 50.000 16.68 0.00 0.00 2.71
2628 2877 1.479323 GTGCATGCCATCCTCACAATT 59.521 47.619 16.68 0.00 0.00 2.32
2629 2878 2.689471 GTGCATGCCATCCTCACAATTA 59.311 45.455 16.68 0.00 0.00 1.40
2630 2879 2.953648 TGCATGCCATCCTCACAATTAG 59.046 45.455 16.68 0.00 0.00 1.73
2631 2880 2.954318 GCATGCCATCCTCACAATTAGT 59.046 45.455 6.36 0.00 0.00 2.24
2653 2902 5.839606 AGTGACTACTTTAAACCAGAGGAGT 59.160 40.000 0.00 0.00 37.29 3.85
2793 3054 2.162906 AGACATGTGGGGCTGGGTT 61.163 57.895 1.15 0.00 0.00 4.11
2794 3055 1.678970 GACATGTGGGGCTGGGTTC 60.679 63.158 1.15 0.00 0.00 3.62
2839 3101 8.450964 GCAAAATTTAAAGGATAAGGAAAAGGC 58.549 33.333 0.00 0.00 0.00 4.35
2855 3117 2.103042 GGCCGGCTCGATATCATGC 61.103 63.158 28.56 0.00 0.00 4.06
2856 3118 2.103042 GCCGGCTCGATATCATGCC 61.103 63.158 22.15 20.13 41.76 4.40
2858 3120 1.016130 CCGGCTCGATATCATGCCAC 61.016 60.000 25.86 8.91 45.13 5.01
2861 3123 2.733542 CGGCTCGATATCATGCCACTAG 60.734 54.545 25.86 12.56 45.13 2.57
2863 3125 3.249091 GCTCGATATCATGCCACTAGTG 58.751 50.000 16.34 16.34 0.00 2.74
2864 3126 3.249091 CTCGATATCATGCCACTAGTGC 58.751 50.000 17.86 13.07 0.00 4.40
2865 3127 1.988467 CGATATCATGCCACTAGTGCG 59.012 52.381 17.86 11.66 0.00 5.34
2866 3128 2.608016 CGATATCATGCCACTAGTGCGT 60.608 50.000 17.86 11.22 0.00 5.24
2911 3174 1.268794 CGTCTCACGTCTCCATCATCC 60.269 57.143 0.00 0.00 36.74 3.51
2992 3259 7.040409 GGATTAACTGTCAGAGGAACAATTGTT 60.040 37.037 23.49 23.49 41.64 2.83
3040 3307 5.104562 CAGATCATGTGATGTGCATTACC 57.895 43.478 7.14 0.00 38.66 2.85
3043 3310 3.966979 TCATGTGATGTGCATTACCCTT 58.033 40.909 0.00 0.00 0.00 3.95
3117 3659 5.674525 TGTTCTCTCCATTGTAGCTTATGG 58.325 41.667 13.31 13.31 42.18 2.74
3197 3751 0.169672 CGGGCATTCTGCACTTTCTG 59.830 55.000 0.00 0.00 46.59 3.02
3207 3761 1.962144 CACTTTCTGGCTGCCTTGG 59.038 57.895 21.03 10.11 0.00 3.61
3208 3762 1.228675 ACTTTCTGGCTGCCTTGGG 60.229 57.895 21.03 8.71 0.00 4.12
3337 3902 2.417097 GTGCATTATTGGGCCCGC 59.583 61.111 19.37 14.09 0.00 6.13
3424 3989 9.712305 ATTCTATCTGGATAGGTTAATCAAACG 57.288 33.333 15.09 0.00 40.81 3.60
3425 3990 8.246430 TCTATCTGGATAGGTTAATCAAACGT 57.754 34.615 15.09 0.00 40.81 3.99
3426 3991 9.358406 TCTATCTGGATAGGTTAATCAAACGTA 57.642 33.333 15.09 0.00 41.34 3.57
3431 3996 9.760077 CTGGATAGGTTAATCAAACGTAATACT 57.240 33.333 0.00 0.00 40.69 2.12
3435 4000 9.987272 ATAGGTTAATCAAACGTAATACTACCC 57.013 33.333 0.00 0.00 40.69 3.69
3477 4050 4.141620 CCAGTGATGATAGGCTGGTTAGTT 60.142 45.833 0.00 0.00 42.47 2.24
3506 4079 8.871629 TTTTTGAGTAATTGATAGGCTGGTTA 57.128 30.769 0.00 0.00 0.00 2.85
3507 4080 8.506168 TTTTGAGTAATTGATAGGCTGGTTAG 57.494 34.615 0.00 0.00 0.00 2.34
3508 4081 6.808321 TGAGTAATTGATAGGCTGGTTAGT 57.192 37.500 0.00 0.00 0.00 2.24
3509 4082 6.582636 TGAGTAATTGATAGGCTGGTTAGTG 58.417 40.000 0.00 0.00 0.00 2.74
3510 4083 5.930135 AGTAATTGATAGGCTGGTTAGTGG 58.070 41.667 0.00 0.00 0.00 4.00
3511 4084 5.665812 AGTAATTGATAGGCTGGTTAGTGGA 59.334 40.000 0.00 0.00 0.00 4.02
3512 4085 5.653255 AATTGATAGGCTGGTTAGTGGAT 57.347 39.130 0.00 0.00 0.00 3.41
3513 4086 4.689612 TTGATAGGCTGGTTAGTGGATC 57.310 45.455 0.00 0.00 0.00 3.36
3514 4087 3.653164 TGATAGGCTGGTTAGTGGATCA 58.347 45.455 0.00 0.00 0.00 2.92
3515 4088 4.037222 TGATAGGCTGGTTAGTGGATCAA 58.963 43.478 0.00 0.00 0.00 2.57
3517 4090 3.356529 AGGCTGGTTAGTGGATCAAAG 57.643 47.619 0.00 0.00 0.00 2.77
3518 4091 1.745653 GGCTGGTTAGTGGATCAAAGC 59.254 52.381 0.00 0.00 0.00 3.51
3519 4092 2.436417 GCTGGTTAGTGGATCAAAGCA 58.564 47.619 0.00 0.00 0.00 3.91
3520 4093 2.421424 GCTGGTTAGTGGATCAAAGCAG 59.579 50.000 17.26 17.26 46.39 4.24
3522 4095 1.745653 GGTTAGTGGATCAAAGCAGGC 59.254 52.381 0.00 0.00 0.00 4.85
3523 4096 2.436417 GTTAGTGGATCAAAGCAGGCA 58.564 47.619 0.00 0.00 0.00 4.75
3524 4097 2.408271 TAGTGGATCAAAGCAGGCAG 57.592 50.000 0.00 0.00 0.00 4.85
3552 4130 1.668047 GGCAAGCATGTTTGTCTCAGC 60.668 52.381 21.37 7.66 30.17 4.26
3617 4204 1.888512 CATGTGCCCTGCTGTAAAACT 59.111 47.619 0.00 0.00 0.00 2.66
3688 4327 1.352404 CTCACGGGTCTCGATCGTC 59.648 63.158 15.94 7.05 42.43 4.20
3694 4333 4.609247 GTCTCGATCGTCGCGGGG 62.609 72.222 15.94 0.00 40.21 5.73
3738 4383 7.427989 TTTTCACTTATAATACTCCCTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
3741 4386 7.083062 TCACTTATAATACTCCCTCCGTCTA 57.917 40.000 0.00 0.00 0.00 2.59
3742 4387 7.166851 TCACTTATAATACTCCCTCCGTCTAG 58.833 42.308 0.00 0.00 0.00 2.43
3743 4388 6.374894 CACTTATAATACTCCCTCCGTCTAGG 59.625 46.154 0.00 0.00 42.97 3.02
3744 4389 6.045341 ACTTATAATACTCCCTCCGTCTAGGT 59.955 42.308 0.00 0.00 41.99 3.08
3745 4390 2.660670 ATACTCCCTCCGTCTAGGTG 57.339 55.000 0.00 0.00 41.99 4.00
3746 4391 1.293062 TACTCCCTCCGTCTAGGTGT 58.707 55.000 0.00 0.00 41.99 4.16
3748 4393 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
3749 4394 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
3750 4395 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
3751 4396 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
3752 4397 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
3753 4398 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
3754 4399 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
3756 4401 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
3757 4402 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
3759 4404 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
3760 4405 6.677431 CCGTCTAGGTGTGTAAGTCATCTTAC 60.677 46.154 10.12 10.12 43.75 2.34
3761 4406 9.720809 CCGTCTAGGTGTGTAAGTCATCTTACG 62.721 48.148 11.67 0.00 44.84 3.18
3776 4459 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
3777 4460 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
3779 4462 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
3781 4464 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
3782 4465 8.590719 TTACGAAAACCAAATAATCCCAAAAC 57.409 30.769 0.00 0.00 0.00 2.43
3783 4466 6.583562 ACGAAAACCAAATAATCCCAAAACA 58.416 32.000 0.00 0.00 0.00 2.83
3785 4468 7.717436 ACGAAAACCAAATAATCCCAAAACATT 59.283 29.630 0.00 0.00 0.00 2.71
3786 4469 8.563732 CGAAAACCAAATAATCCCAAAACATTT 58.436 29.630 0.00 0.00 0.00 2.32
3789 4472 9.513906 AAACCAAATAATCCCAAAACATTTAGG 57.486 29.630 0.00 0.00 0.00 2.69
3790 4473 7.109501 ACCAAATAATCCCAAAACATTTAGGC 58.890 34.615 0.00 0.00 0.00 3.93
3791 4474 7.108847 CCAAATAATCCCAAAACATTTAGGCA 58.891 34.615 0.00 0.00 0.00 4.75
3792 4475 7.065683 CCAAATAATCCCAAAACATTTAGGCAC 59.934 37.037 0.00 0.00 0.00 5.01
3793 4476 3.866883 ATCCCAAAACATTTAGGCACG 57.133 42.857 0.00 0.00 0.00 5.34
3794 4477 1.889829 TCCCAAAACATTTAGGCACGG 59.110 47.619 0.00 0.00 0.00 4.94
3795 4478 1.616374 CCCAAAACATTTAGGCACGGT 59.384 47.619 0.00 0.00 0.00 4.83
3796 4479 2.609244 CCCAAAACATTTAGGCACGGTG 60.609 50.000 3.15 3.15 0.00 4.94
3797 4480 2.058057 CAAAACATTTAGGCACGGTGC 58.942 47.619 24.43 24.43 44.08 5.01
3810 4493 3.691498 GCACGGTGCATTAAATTCTACC 58.309 45.455 27.10 0.00 44.26 3.18
3811 4494 3.377172 GCACGGTGCATTAAATTCTACCT 59.623 43.478 27.10 0.00 44.26 3.08
3812 4495 4.495844 GCACGGTGCATTAAATTCTACCTC 60.496 45.833 27.10 0.00 44.26 3.85
3813 4496 3.869246 ACGGTGCATTAAATTCTACCTCG 59.131 43.478 0.00 0.00 0.00 4.63
3814 4497 3.869246 CGGTGCATTAAATTCTACCTCGT 59.131 43.478 0.00 0.00 0.00 4.18
3815 4498 4.331717 CGGTGCATTAAATTCTACCTCGTT 59.668 41.667 0.00 0.00 0.00 3.85
3816 4499 5.163794 CGGTGCATTAAATTCTACCTCGTTT 60.164 40.000 0.00 0.00 0.00 3.60
3817 4500 6.255950 GGTGCATTAAATTCTACCTCGTTTC 58.744 40.000 0.00 0.00 0.00 2.78
3818 4501 6.093633 GGTGCATTAAATTCTACCTCGTTTCT 59.906 38.462 0.00 0.00 0.00 2.52
3819 4502 7.361799 GGTGCATTAAATTCTACCTCGTTTCTT 60.362 37.037 0.00 0.00 0.00 2.52
3820 4503 7.481798 GTGCATTAAATTCTACCTCGTTTCTTG 59.518 37.037 0.00 0.00 0.00 3.02
3821 4504 6.469275 GCATTAAATTCTACCTCGTTTCTTGC 59.531 38.462 0.00 0.00 0.00 4.01
3822 4505 7.626452 GCATTAAATTCTACCTCGTTTCTTGCT 60.626 37.037 0.00 0.00 0.00 3.91
3823 4506 7.739498 TTAAATTCTACCTCGTTTCTTGCTT 57.261 32.000 0.00 0.00 0.00 3.91
3824 4507 5.864628 AATTCTACCTCGTTTCTTGCTTC 57.135 39.130 0.00 0.00 0.00 3.86
3825 4508 4.602340 TTCTACCTCGTTTCTTGCTTCT 57.398 40.909 0.00 0.00 0.00 2.85
3828 4511 3.194005 ACCTCGTTTCTTGCTTCTTGA 57.806 42.857 0.00 0.00 0.00 3.02
3830 4513 2.872245 CCTCGTTTCTTGCTTCTTGACA 59.128 45.455 0.00 0.00 0.00 3.58
3833 4516 5.352569 CCTCGTTTCTTGCTTCTTGACATAT 59.647 40.000 0.00 0.00 0.00 1.78
3836 4525 6.426633 TCGTTTCTTGCTTCTTGACATATCAA 59.573 34.615 0.00 0.00 42.73 2.57
3838 4527 6.500684 TTCTTGCTTCTTGACATATCAACC 57.499 37.500 0.00 0.00 40.01 3.77
3843 4532 7.936496 TGCTTCTTGACATATCAACCAATAA 57.064 32.000 0.00 0.00 40.01 1.40
3850 4539 9.334947 CTTGACATATCAACCAATAAGAGATGT 57.665 33.333 0.00 0.00 44.20 3.06
3853 4542 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
3855 4544 3.591527 TCAACCAATAAGAGATGTGGGGT 59.408 43.478 0.00 0.00 35.32 4.95
3856 4545 3.652057 ACCAATAAGAGATGTGGGGTG 57.348 47.619 0.00 0.00 35.32 4.61
3860 4549 1.357137 TAAGAGATGTGGGGTGTGCA 58.643 50.000 0.00 0.00 0.00 4.57
3864 4553 0.112995 AGATGTGGGGTGTGCATGTT 59.887 50.000 0.00 0.00 0.00 2.71
3866 4555 1.344114 GATGTGGGGTGTGCATGTTTT 59.656 47.619 0.00 0.00 0.00 2.43
3867 4556 0.749649 TGTGGGGTGTGCATGTTTTC 59.250 50.000 0.00 0.00 0.00 2.29
3868 4557 0.749649 GTGGGGTGTGCATGTTTTCA 59.250 50.000 0.00 0.00 0.00 2.69
3869 4558 1.137872 GTGGGGTGTGCATGTTTTCAA 59.862 47.619 0.00 0.00 0.00 2.69
3871 4560 2.224233 TGGGGTGTGCATGTTTTCAATG 60.224 45.455 0.00 0.00 0.00 2.82
3872 4561 2.036992 GGGGTGTGCATGTTTTCAATGA 59.963 45.455 0.00 0.00 0.00 2.57
3877 4566 5.042593 GTGTGCATGTTTTCAATGACTTGA 58.957 37.500 0.00 0.00 39.62 3.02
3878 4567 5.174398 GTGTGCATGTTTTCAATGACTTGAG 59.826 40.000 0.00 0.00 42.19 3.02
3879 4568 5.067544 TGTGCATGTTTTCAATGACTTGAGA 59.932 36.000 0.00 0.00 42.19 3.27
3880 4569 5.400485 GTGCATGTTTTCAATGACTTGAGAC 59.600 40.000 0.00 0.00 42.19 3.36
3881 4570 5.300034 TGCATGTTTTCAATGACTTGAGACT 59.700 36.000 0.00 0.00 42.19 3.24
3882 4571 6.486320 TGCATGTTTTCAATGACTTGAGACTA 59.514 34.615 0.00 0.00 42.19 2.59
3883 4572 6.798959 GCATGTTTTCAATGACTTGAGACTAC 59.201 38.462 0.00 0.00 42.19 2.73
3885 4574 6.353323 TGTTTTCAATGACTTGAGACTACCA 58.647 36.000 0.00 0.00 42.19 3.25
3886 4575 6.826231 TGTTTTCAATGACTTGAGACTACCAA 59.174 34.615 0.00 0.00 42.19 3.67
3889 4578 5.924356 TCAATGACTTGAGACTACCAAACA 58.076 37.500 0.00 0.00 36.46 2.83
3890 4579 5.758296 TCAATGACTTGAGACTACCAAACAC 59.242 40.000 0.00 0.00 36.46 3.32
3891 4580 3.713288 TGACTTGAGACTACCAAACACG 58.287 45.455 0.00 0.00 0.00 4.49
3892 4581 3.382227 TGACTTGAGACTACCAAACACGA 59.618 43.478 0.00 0.00 0.00 4.35
3893 4582 3.714391 ACTTGAGACTACCAAACACGAC 58.286 45.455 0.00 0.00 0.00 4.34
3894 4583 3.131577 ACTTGAGACTACCAAACACGACA 59.868 43.478 0.00 0.00 0.00 4.35
3895 4584 4.202223 ACTTGAGACTACCAAACACGACAT 60.202 41.667 0.00 0.00 0.00 3.06
3896 4585 3.649073 TGAGACTACCAAACACGACATG 58.351 45.455 0.00 0.00 0.00 3.21
3898 4587 2.139917 GACTACCAAACACGACATGCA 58.860 47.619 0.00 0.00 0.00 3.96
3902 4591 0.040157 CCAAACACGACATGCAGTGG 60.040 55.000 20.60 3.36 42.25 4.00
3903 4592 0.661187 CAAACACGACATGCAGTGGC 60.661 55.000 20.60 0.92 42.25 5.01
3904 4593 0.819259 AAACACGACATGCAGTGGCT 60.819 50.000 20.60 8.47 42.25 4.75
3905 4594 0.034756 AACACGACATGCAGTGGCTA 59.965 50.000 20.60 0.00 42.25 3.93
3907 4596 0.390340 CACGACATGCAGTGGCTAGT 60.390 55.000 11.93 0.00 41.91 2.57
3915 4604 2.558617 CAGTGGCTAGTGCATTGCA 58.441 52.632 7.38 7.38 41.91 4.08
3916 4605 1.100510 CAGTGGCTAGTGCATTGCAT 58.899 50.000 15.49 6.70 41.91 3.96
3959 5075 9.774742 GCAAATGAATATTAAGTTCTCTCGTTT 57.225 29.630 0.00 0.00 0.00 3.60
3963 5079 8.488651 TGAATATTAAGTTCTCTCGTTTTCCC 57.511 34.615 0.00 0.00 0.00 3.97
3966 5082 3.404224 AAGTTCTCTCGTTTTCCCCTC 57.596 47.619 0.00 0.00 0.00 4.30
3967 5083 1.624312 AGTTCTCTCGTTTTCCCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
3970 5086 0.537653 CTCTCGTTTTCCCCTCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
3972 5088 0.984995 CTCGTTTTCCCCTCCTCCTT 59.015 55.000 0.00 0.00 0.00 3.36
3973 5089 0.690762 TCGTTTTCCCCTCCTCCTTG 59.309 55.000 0.00 0.00 0.00 3.61
3974 5090 0.322546 CGTTTTCCCCTCCTCCTTGG 60.323 60.000 0.00 0.00 37.10 3.61
3975 5091 0.778083 GTTTTCCCCTCCTCCTTGGT 59.222 55.000 0.00 0.00 37.07 3.67
3976 5092 1.073098 TTTTCCCCTCCTCCTTGGTC 58.927 55.000 0.00 0.00 37.07 4.02
3977 5093 0.104144 TTTCCCCTCCTCCTTGGTCA 60.104 55.000 0.00 0.00 37.07 4.02
3978 5094 0.840722 TTCCCCTCCTCCTTGGTCAC 60.841 60.000 0.00 0.00 37.07 3.67
3979 5095 2.660064 CCCCTCCTCCTTGGTCACG 61.660 68.421 0.00 0.00 37.07 4.35
3980 5096 2.660064 CCCTCCTCCTTGGTCACGG 61.660 68.421 0.00 0.00 37.07 4.94
3981 5097 1.913762 CCTCCTCCTTGGTCACGGT 60.914 63.158 0.00 0.00 37.07 4.83
3982 5098 1.293498 CTCCTCCTTGGTCACGGTG 59.707 63.158 0.56 0.56 37.07 4.94
3983 5099 2.358737 CCTCCTTGGTCACGGTGC 60.359 66.667 2.51 0.00 0.00 5.01
3984 5100 2.425592 CTCCTTGGTCACGGTGCA 59.574 61.111 2.51 0.00 0.00 4.57
3985 5101 1.961277 CTCCTTGGTCACGGTGCAC 60.961 63.158 8.80 8.80 0.00 4.57
3986 5102 2.203139 CCTTGGTCACGGTGCACA 60.203 61.111 20.43 1.81 0.00 4.57
3987 5103 1.821759 CCTTGGTCACGGTGCACAA 60.822 57.895 20.43 9.76 0.00 3.33
3988 5104 1.355210 CTTGGTCACGGTGCACAAC 59.645 57.895 20.43 10.47 0.00 3.32
3989 5105 2.058829 CTTGGTCACGGTGCACAACC 62.059 60.000 20.43 18.91 46.60 3.77
4000 5116 4.584327 GGTGCACAACCTAAAATGACTT 57.416 40.909 20.43 0.00 46.55 3.01
4001 5117 5.699097 GGTGCACAACCTAAAATGACTTA 57.301 39.130 20.43 0.00 46.55 2.24
4002 5118 5.458015 GGTGCACAACCTAAAATGACTTAC 58.542 41.667 20.43 0.00 46.55 2.34
4003 5119 5.240844 GGTGCACAACCTAAAATGACTTACT 59.759 40.000 20.43 0.00 46.55 2.24
4004 5120 6.371389 GTGCACAACCTAAAATGACTTACTC 58.629 40.000 13.17 0.00 0.00 2.59
4005 5121 6.017440 GTGCACAACCTAAAATGACTTACTCA 60.017 38.462 13.17 0.00 0.00 3.41
4006 5122 6.017440 TGCACAACCTAAAATGACTTACTCAC 60.017 38.462 0.00 0.00 0.00 3.51
4007 5123 6.567891 GCACAACCTAAAATGACTTACTCACC 60.568 42.308 0.00 0.00 0.00 4.02
4008 5124 6.710744 CACAACCTAAAATGACTTACTCACCT 59.289 38.462 0.00 0.00 0.00 4.00
4009 5125 7.876068 CACAACCTAAAATGACTTACTCACCTA 59.124 37.037 0.00 0.00 0.00 3.08
4010 5126 8.095169 ACAACCTAAAATGACTTACTCACCTAG 58.905 37.037 0.00 0.00 0.00 3.02
4011 5127 8.311836 CAACCTAAAATGACTTACTCACCTAGA 58.688 37.037 0.00 0.00 0.00 2.43
4012 5128 7.838884 ACCTAAAATGACTTACTCACCTAGAC 58.161 38.462 0.00 0.00 0.00 2.59
4013 5129 6.973474 CCTAAAATGACTTACTCACCTAGACG 59.027 42.308 0.00 0.00 0.00 4.18
4014 5130 4.985538 AATGACTTACTCACCTAGACGG 57.014 45.455 0.00 0.00 39.35 4.79
4015 5131 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
4016 5132 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
4017 5133 2.944349 GACTTACTCACCTAGACGGAGG 59.056 54.545 0.00 0.00 42.89 4.30
4018 5134 2.299521 CTTACTCACCTAGACGGAGGG 58.700 57.143 5.42 0.00 41.36 4.30
4019 5135 1.588239 TACTCACCTAGACGGAGGGA 58.412 55.000 5.42 0.16 41.36 4.20
4020 5136 0.256464 ACTCACCTAGACGGAGGGAG 59.744 60.000 12.80 12.80 41.36 4.30
4021 5137 0.256464 CTCACCTAGACGGAGGGAGT 59.744 60.000 5.42 0.00 41.36 3.85
4022 5138 1.489649 CTCACCTAGACGGAGGGAGTA 59.510 57.143 5.42 0.00 41.36 2.59
4023 5139 1.211457 TCACCTAGACGGAGGGAGTAC 59.789 57.143 5.42 0.00 41.36 2.73
4039 5155 5.419471 AGGGAGTACTACTGATGAAGTGTTC 59.581 44.000 4.77 0.00 40.26 3.18
4080 5201 1.415659 GATAGTGGGATCTGCTGTGCT 59.584 52.381 0.00 0.00 0.00 4.40
4177 5303 2.597340 CCGGGCATCTCCAACCAT 59.403 61.111 0.00 0.00 36.21 3.55
4195 5321 2.587522 CATCCCCAGATCGAGTACTCA 58.412 52.381 22.37 10.16 0.00 3.41
4202 5328 2.098280 CAGATCGAGTACTCACCAGGTG 59.902 54.545 22.37 14.19 34.45 4.00
4204 5330 2.281539 TCGAGTACTCACCAGGTGAA 57.718 50.000 23.11 6.82 42.26 3.18
4208 5334 1.971357 AGTACTCACCAGGTGAACCAG 59.029 52.381 23.11 13.69 42.26 4.00
4230 5356 4.583871 GCCATTGCTAATCTGTAGCCTAT 58.416 43.478 3.06 0.00 39.69 2.57
4231 5357 4.633565 GCCATTGCTAATCTGTAGCCTATC 59.366 45.833 3.06 0.00 39.69 2.08
4252 5378 9.305925 CCTATCAATTTCCACAAAATTTAGCTC 57.694 33.333 0.00 0.00 43.51 4.09
4277 5403 3.171987 CATGCAGTCCAGCGTGTC 58.828 61.111 0.00 0.00 44.47 3.67
4278 5404 2.433145 ATGCAGTCCAGCGTGTCG 60.433 61.111 0.00 0.00 37.31 4.35
4280 5406 2.125912 GCAGTCCAGCGTGTCGAT 60.126 61.111 0.00 0.00 0.00 3.59
4303 5429 8.383619 CGATAAACATTTCTGAACTCGATCTTT 58.616 33.333 0.00 0.00 0.00 2.52
4306 5432 7.736447 AACATTTCTGAACTCGATCTTTTCT 57.264 32.000 0.00 0.00 0.00 2.52
4307 5433 7.126726 ACATTTCTGAACTCGATCTTTTCTG 57.873 36.000 0.00 0.00 0.00 3.02
4309 5435 7.442364 ACATTTCTGAACTCGATCTTTTCTGAA 59.558 33.333 12.23 12.23 36.19 3.02
4310 5436 7.969536 TTTCTGAACTCGATCTTTTCTGAAT 57.030 32.000 14.90 0.00 37.18 2.57
4311 5437 9.658799 ATTTCTGAACTCGATCTTTTCTGAATA 57.341 29.630 14.90 9.93 37.18 1.75
4312 5438 8.467402 TTCTGAACTCGATCTTTTCTGAATAC 57.533 34.615 12.23 0.00 34.30 1.89
4313 5439 7.036220 TCTGAACTCGATCTTTTCTGAATACC 58.964 38.462 0.00 0.00 0.00 2.73
4567 5727 2.551270 CAAACTGACTGACGCGCC 59.449 61.111 5.73 0.00 0.00 6.53
4570 5730 3.575351 AACTGACTGACGCGCCCTC 62.575 63.158 5.73 0.00 0.00 4.30
4915 6075 1.987855 CTACTTCTCCGCCCACCCA 60.988 63.158 0.00 0.00 0.00 4.51
5070 6235 0.174162 GCTTTGCTGCCCCTGTATTG 59.826 55.000 0.00 0.00 0.00 1.90
5075 6240 2.930950 TGCTGCCCCTGTATTGTTATC 58.069 47.619 0.00 0.00 0.00 1.75
5078 6243 3.181450 GCTGCCCCTGTATTGTTATCTCT 60.181 47.826 0.00 0.00 0.00 3.10
5079 6244 4.040461 GCTGCCCCTGTATTGTTATCTCTA 59.960 45.833 0.00 0.00 0.00 2.43
5082 6247 7.365117 GCTGCCCCTGTATTGTTATCTCTATAT 60.365 40.741 0.00 0.00 0.00 0.86
5155 6322 1.594293 CGGTCGTGCCAAGACAAGT 60.594 57.895 12.73 0.00 40.20 3.16
5248 6427 3.838244 TCCTAGGTTTAGCATCGCATT 57.162 42.857 9.08 0.00 0.00 3.56
5253 6432 6.041182 TCCTAGGTTTAGCATCGCATTAACTA 59.959 38.462 9.08 0.00 0.00 2.24
5258 6437 6.905609 GGTTTAGCATCGCATTAACTACTTTC 59.094 38.462 0.00 0.00 0.00 2.62
5259 6438 7.413657 GGTTTAGCATCGCATTAACTACTTTCA 60.414 37.037 0.00 0.00 0.00 2.69
5260 6439 5.725110 AGCATCGCATTAACTACTTTCAG 57.275 39.130 0.00 0.00 0.00 3.02
5261 6440 4.034510 AGCATCGCATTAACTACTTTCAGC 59.965 41.667 0.00 0.00 0.00 4.26
5262 6441 4.786609 GCATCGCATTAACTACTTTCAGCC 60.787 45.833 0.00 0.00 0.00 4.85
5263 6442 4.202245 TCGCATTAACTACTTTCAGCCT 57.798 40.909 0.00 0.00 0.00 4.58
5265 6444 5.001232 TCGCATTAACTACTTTCAGCCTTT 58.999 37.500 0.00 0.00 0.00 3.11
5266 6445 5.088739 CGCATTAACTACTTTCAGCCTTTG 58.911 41.667 0.00 0.00 0.00 2.77
5267 6446 4.859245 GCATTAACTACTTTCAGCCTTTGC 59.141 41.667 0.00 0.00 37.95 3.68
5285 6464 0.464554 GCTAATGGCCGCCTTCTTCT 60.465 55.000 11.61 0.00 34.27 2.85
5286 6465 2.019156 GCTAATGGCCGCCTTCTTCTT 61.019 52.381 11.61 0.00 34.27 2.52
5313 6492 3.681897 AGAAGTCAATGTCATCGCTTCAC 59.318 43.478 18.17 2.86 35.96 3.18
5330 6509 5.587289 GCTTCACAGTAAAACAACCAATCA 58.413 37.500 0.00 0.00 0.00 2.57
5393 6588 3.774734 AGGTCAACCCCCTTAATGAAAC 58.225 45.455 0.00 0.00 36.42 2.78
5397 6594 5.717654 GGTCAACCCCCTTAATGAAACATTA 59.282 40.000 0.00 0.00 0.00 1.90
5467 6678 1.429423 CCAAAGAAGAATCGGCGGC 59.571 57.895 7.21 0.00 0.00 6.53
5542 6766 5.852282 AAGCTTCAGGTTAAACATGTGTT 57.148 34.783 0.00 0.00 40.50 3.32
5547 6771 6.567891 GCTTCAGGTTAAACATGTGTTACCTC 60.568 42.308 21.39 8.86 42.20 3.85
5573 6797 3.073678 GTTGGTAGACATGTCATGTGCA 58.926 45.455 27.02 7.52 45.03 4.57
5605 6829 1.497722 CGCGTCTTTTTCTGGCCTC 59.502 57.895 3.32 0.00 0.00 4.70
5654 6878 0.941542 TTCAAACCGGAAGCAACTCG 59.058 50.000 9.46 0.00 0.00 4.18
5765 7025 0.523966 AACTTGACTCCGAGAGCGAG 59.476 55.000 1.33 5.70 40.82 5.03
5772 7032 2.051435 CCGAGAGCGAGCGATGAG 60.051 66.667 0.00 0.00 40.82 2.90
5775 7035 1.008995 GAGAGCGAGCGATGAGGAC 60.009 63.158 0.00 0.00 0.00 3.85
5823 7083 1.083015 CGTGCAAAGGTTCGTTCGG 60.083 57.895 0.00 0.00 0.00 4.30
5916 7182 2.815308 GTCCGTGCGATGGGATCT 59.185 61.111 0.00 0.00 34.25 2.75
5941 7207 2.591429 TGCAGTGCACGAACAGGG 60.591 61.111 15.37 0.00 31.71 4.45
5942 7208 2.280797 GCAGTGCACGAACAGGGA 60.281 61.111 11.09 0.00 0.00 4.20
6036 7307 3.458189 GGCAGCACGAAATAGTACAGAT 58.542 45.455 0.00 0.00 0.00 2.90
6070 7342 9.577222 AGTACAAGAGACTTTACTTTCTCTACT 57.423 33.333 1.65 0.21 46.48 2.57
6071 7343 9.615295 GTACAAGAGACTTTACTTTCTCTACTG 57.385 37.037 1.65 1.13 46.48 2.74
6072 7344 8.240267 ACAAGAGACTTTACTTTCTCTACTGT 57.760 34.615 1.65 1.69 46.48 3.55
6073 7345 9.352191 ACAAGAGACTTTACTTTCTCTACTGTA 57.648 33.333 1.65 0.00 46.48 2.74
6074 7346 9.834628 CAAGAGACTTTACTTTCTCTACTGTAG 57.165 37.037 8.55 8.55 46.48 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 3.967467 AGCTTCCTTTCATCCCATGAT 57.033 42.857 0.00 0.00 39.39 2.45
138 139 1.983196 CTCATCACGCTCGTCCTCGT 61.983 60.000 0.00 0.00 39.79 4.18
190 191 2.023673 TGCAGGGGCTCAATATTTTCG 58.976 47.619 0.00 0.00 41.91 3.46
247 249 0.246360 AATCACGCATCTCACGGTGA 59.754 50.000 10.88 10.88 34.00 4.02
302 304 0.615331 ATGTGATCCCAGACGTGCTT 59.385 50.000 0.00 0.00 0.00 3.91
357 362 6.015519 TCCAACCAAATCGAAATTGTCTTGAT 60.016 34.615 15.92 0.00 0.00 2.57
572 577 2.687935 CGTTTGAGTATGGATTTGGGGG 59.312 50.000 0.00 0.00 0.00 5.40
587 593 1.401199 GTCCGGTTTTTGTCCGTTTGA 59.599 47.619 0.00 0.00 45.63 2.69
617 623 1.736645 CGCGTGACCTCAAACGGAT 60.737 57.895 0.00 0.00 40.12 4.18
626 632 1.079819 CAACTCCATCGCGTGACCT 60.080 57.895 5.77 0.00 0.00 3.85
665 671 0.391130 CCCTCGAAAATGCCTGTCGA 60.391 55.000 0.00 0.00 41.22 4.20
666 672 0.673644 ACCCTCGAAAATGCCTGTCG 60.674 55.000 0.00 0.00 36.12 4.35
678 684 2.837411 TGGTGTACCAAACCCTCGA 58.163 52.632 0.24 0.00 44.35 4.04
759 765 1.908793 CTGGTCCAGTGGTCCTCGT 60.909 63.158 23.61 0.00 32.23 4.18
857 868 1.152368 GGAATGGGATGCTGGGGAG 59.848 63.158 0.00 0.00 0.00 4.30
1283 1319 1.494960 GCAGAGGAAGAGGAGATGGT 58.505 55.000 0.00 0.00 0.00 3.55
1299 1335 0.754217 ACCAATGCATAGCAGGGCAG 60.754 55.000 0.00 0.00 43.65 4.85
1323 1359 2.830104 ACACCACGTCTTACTCAAACC 58.170 47.619 0.00 0.00 0.00 3.27
1327 1363 2.816689 CACAACACCACGTCTTACTCA 58.183 47.619 0.00 0.00 0.00 3.41
1330 1366 0.231279 CGCACAACACCACGTCTTAC 59.769 55.000 0.00 0.00 0.00 2.34
1331 1367 1.492319 GCGCACAACACCACGTCTTA 61.492 55.000 0.30 0.00 0.00 2.10
1332 1368 2.819552 GCGCACAACACCACGTCTT 61.820 57.895 0.30 0.00 0.00 3.01
1333 1369 3.269347 GCGCACAACACCACGTCT 61.269 61.111 0.30 0.00 0.00 4.18
1776 1826 1.974875 GAACGGAAAATGGGGGCGT 60.975 57.895 0.00 0.00 0.00 5.68
1805 1862 2.364002 ACACCGGCTTTAATGCACTTTT 59.636 40.909 14.56 0.00 34.04 2.27
1834 1891 8.341903 GCTGCCACTTTTAAATAACACAAAAAT 58.658 29.630 0.00 0.00 0.00 1.82
1835 1892 7.334421 TGCTGCCACTTTTAAATAACACAAAAA 59.666 29.630 0.00 0.00 0.00 1.94
1837 1894 6.341316 TGCTGCCACTTTTAAATAACACAAA 58.659 32.000 0.00 0.00 0.00 2.83
1838 1895 5.907207 TGCTGCCACTTTTAAATAACACAA 58.093 33.333 0.00 0.00 0.00 3.33
1839 1896 5.521906 TGCTGCCACTTTTAAATAACACA 57.478 34.783 0.00 0.00 0.00 3.72
1841 1898 4.555262 GCTGCTGCCACTTTTAAATAACA 58.445 39.130 3.85 0.00 0.00 2.41
1866 2070 1.654317 CAAGCTCAGTCCATCTGCTC 58.346 55.000 0.00 0.00 43.32 4.26
1882 2086 0.732571 ACACAAACACACGAGCCAAG 59.267 50.000 0.00 0.00 0.00 3.61
1884 2088 2.025589 TAACACAAACACACGAGCCA 57.974 45.000 0.00 0.00 0.00 4.75
1886 2090 5.276161 CCAAAAATAACACAAACACACGAGC 60.276 40.000 0.00 0.00 0.00 5.03
1887 2091 5.231147 CCCAAAAATAACACAAACACACGAG 59.769 40.000 0.00 0.00 0.00 4.18
1889 2093 4.865365 ACCCAAAAATAACACAAACACACG 59.135 37.500 0.00 0.00 0.00 4.49
1892 2096 5.064071 CACCACCCAAAAATAACACAAACAC 59.936 40.000 0.00 0.00 0.00 3.32
1894 2098 5.179533 ACACCACCCAAAAATAACACAAAC 58.820 37.500 0.00 0.00 0.00 2.93
1899 2103 4.030913 TCCAACACCACCCAAAAATAACA 58.969 39.130 0.00 0.00 0.00 2.41
1903 2107 2.437651 CCTTCCAACACCACCCAAAAAT 59.562 45.455 0.00 0.00 0.00 1.82
1904 2108 1.834263 CCTTCCAACACCACCCAAAAA 59.166 47.619 0.00 0.00 0.00 1.94
1905 2109 1.273324 ACCTTCCAACACCACCCAAAA 60.273 47.619 0.00 0.00 0.00 2.44
1906 2110 0.336737 ACCTTCCAACACCACCCAAA 59.663 50.000 0.00 0.00 0.00 3.28
1908 2112 1.228793 CACCTTCCAACACCACCCA 59.771 57.895 0.00 0.00 0.00 4.51
1909 2113 0.396556 AACACCTTCCAACACCACCC 60.397 55.000 0.00 0.00 0.00 4.61
1910 2114 1.136110 CAAACACCTTCCAACACCACC 59.864 52.381 0.00 0.00 0.00 4.61
1911 2115 2.096248 TCAAACACCTTCCAACACCAC 58.904 47.619 0.00 0.00 0.00 4.16
1912 2116 2.291282 ACTCAAACACCTTCCAACACCA 60.291 45.455 0.00 0.00 0.00 4.17
1913 2117 2.375146 ACTCAAACACCTTCCAACACC 58.625 47.619 0.00 0.00 0.00 4.16
1914 2118 3.486875 CGAACTCAAACACCTTCCAACAC 60.487 47.826 0.00 0.00 0.00 3.32
1915 2119 2.680841 CGAACTCAAACACCTTCCAACA 59.319 45.455 0.00 0.00 0.00 3.33
1916 2120 2.540973 GCGAACTCAAACACCTTCCAAC 60.541 50.000 0.00 0.00 0.00 3.77
1917 2121 1.673920 GCGAACTCAAACACCTTCCAA 59.326 47.619 0.00 0.00 0.00 3.53
1918 2122 1.305201 GCGAACTCAAACACCTTCCA 58.695 50.000 0.00 0.00 0.00 3.53
1919 2123 0.234884 CGCGAACTCAAACACCTTCC 59.765 55.000 0.00 0.00 0.00 3.46
2194 2400 6.581712 ACAGTGGTAGTAGTAGAGTAGTAGC 58.418 44.000 0.00 2.70 0.00 3.58
2197 2403 7.732222 AGTACAGTGGTAGTAGTAGAGTAGT 57.268 40.000 0.00 0.00 31.34 2.73
2208 2414 6.014647 TGTAATCTCCAAGTACAGTGGTAGT 58.985 40.000 13.60 7.03 33.71 2.73
2264 2487 1.067071 GTACAGTGGTGGTAGTGGAGC 60.067 57.143 0.00 0.00 0.00 4.70
2294 2517 4.672024 CGCCTACTGTGTAGTCTGTGTTAG 60.672 50.000 4.36 0.00 38.36 2.34
2396 2630 0.779997 AAAACAGGGTCAGGCATCCT 59.220 50.000 0.00 0.00 0.00 3.24
2447 2681 1.739562 GAGCAGAACACGAGCAGGG 60.740 63.158 0.00 0.00 0.00 4.45
2449 2683 2.091112 CCGAGCAGAACACGAGCAG 61.091 63.158 0.00 0.00 33.84 4.24
2450 2684 2.049156 CCGAGCAGAACACGAGCA 60.049 61.111 0.00 0.00 33.84 4.26
2451 2685 1.222115 AAACCGAGCAGAACACGAGC 61.222 55.000 0.00 0.00 33.84 5.03
2452 2686 0.508641 CAAACCGAGCAGAACACGAG 59.491 55.000 0.00 0.00 33.84 4.18
2453 2687 1.495584 GCAAACCGAGCAGAACACGA 61.496 55.000 0.00 0.00 33.84 4.35
2454 2688 1.082756 GCAAACCGAGCAGAACACG 60.083 57.895 0.00 0.00 0.00 4.49
2458 2692 0.394938 TGTAGGCAAACCGAGCAGAA 59.605 50.000 0.00 0.00 42.76 3.02
2459 2693 0.320421 GTGTAGGCAAACCGAGCAGA 60.320 55.000 0.00 0.00 42.76 4.26
2473 2707 1.452025 CGTCGTTGCTCTTGTGTGTAG 59.548 52.381 0.00 0.00 0.00 2.74
2551 2800 7.477494 TGAAAAGAAAAACTAGCACAGGTAAC 58.523 34.615 0.00 0.00 0.00 2.50
2558 2807 6.695713 ACCGAAATGAAAAGAAAAACTAGCAC 59.304 34.615 0.00 0.00 0.00 4.40
2561 2810 6.143919 GCCACCGAAATGAAAAGAAAAACTAG 59.856 38.462 0.00 0.00 0.00 2.57
2562 2811 5.980715 GCCACCGAAATGAAAAGAAAAACTA 59.019 36.000 0.00 0.00 0.00 2.24
2563 2812 4.808895 GCCACCGAAATGAAAAGAAAAACT 59.191 37.500 0.00 0.00 0.00 2.66
2565 2814 4.123506 GGCCACCGAAATGAAAAGAAAAA 58.876 39.130 0.00 0.00 0.00 1.94
2566 2815 3.723260 GGCCACCGAAATGAAAAGAAAA 58.277 40.909 0.00 0.00 0.00 2.29
2587 2836 4.531912 CTGCCATTGCTCGCTGCG 62.532 66.667 17.25 17.25 46.63 5.18
2588 2837 3.392595 GACTGCCATTGCTCGCTGC 62.393 63.158 0.00 0.00 43.25 5.25
2589 2838 1.744368 AGACTGCCATTGCTCGCTG 60.744 57.895 0.00 0.00 38.71 5.18
2590 2839 1.744368 CAGACTGCCATTGCTCGCT 60.744 57.895 0.00 0.00 38.71 4.93
2591 2840 2.037136 ACAGACTGCCATTGCTCGC 61.037 57.895 1.25 0.00 38.71 5.03
2592 2841 1.792301 CACAGACTGCCATTGCTCG 59.208 57.895 1.25 0.00 38.71 5.03
2593 2842 1.239296 TGCACAGACTGCCATTGCTC 61.239 55.000 14.65 0.00 46.51 4.26
2594 2843 0.611062 ATGCACAGACTGCCATTGCT 60.611 50.000 14.65 1.35 46.51 3.91
2595 2844 0.457853 CATGCACAGACTGCCATTGC 60.458 55.000 1.25 5.60 46.51 3.56
2596 2845 0.457853 GCATGCACAGACTGCCATTG 60.458 55.000 14.21 0.00 46.51 2.82
2597 2846 1.888018 GCATGCACAGACTGCCATT 59.112 52.632 14.21 0.00 46.51 3.16
2598 2847 3.599584 GCATGCACAGACTGCCAT 58.400 55.556 14.21 2.88 46.51 4.40
2602 2851 0.393944 AGGATGGCATGCACAGACTG 60.394 55.000 21.36 0.00 0.00 3.51
2603 2852 0.107312 GAGGATGGCATGCACAGACT 60.107 55.000 21.36 15.53 0.00 3.24
2604 2853 0.393402 TGAGGATGGCATGCACAGAC 60.393 55.000 21.36 11.43 0.00 3.51
2605 2854 0.393402 GTGAGGATGGCATGCACAGA 60.393 55.000 21.36 0.00 0.00 3.41
2606 2855 0.678684 TGTGAGGATGGCATGCACAG 60.679 55.000 21.36 0.00 34.85 3.66
2607 2856 0.251253 TTGTGAGGATGGCATGCACA 60.251 50.000 21.36 17.90 37.66 4.57
2608 2857 1.108776 ATTGTGAGGATGGCATGCAC 58.891 50.000 21.36 15.33 0.00 4.57
2609 2858 1.855295 AATTGTGAGGATGGCATGCA 58.145 45.000 21.36 6.13 0.00 3.96
2610 2859 2.954318 ACTAATTGTGAGGATGGCATGC 59.046 45.455 9.90 9.90 0.00 4.06
2623 2872 9.490379 CTCTGGTTTAAAGTAGTCACTAATTGT 57.510 33.333 0.00 0.00 33.48 2.71
2624 2873 8.936864 CCTCTGGTTTAAAGTAGTCACTAATTG 58.063 37.037 0.00 0.00 33.48 2.32
2625 2874 8.877195 TCCTCTGGTTTAAAGTAGTCACTAATT 58.123 33.333 0.00 0.00 33.48 1.40
2626 2875 8.431910 TCCTCTGGTTTAAAGTAGTCACTAAT 57.568 34.615 0.00 0.00 33.48 1.73
2627 2876 7.508296 ACTCCTCTGGTTTAAAGTAGTCACTAA 59.492 37.037 0.00 0.00 33.48 2.24
2628 2877 7.008941 ACTCCTCTGGTTTAAAGTAGTCACTA 58.991 38.462 0.00 0.00 33.48 2.74
2629 2878 5.839606 ACTCCTCTGGTTTAAAGTAGTCACT 59.160 40.000 0.00 0.00 36.19 3.41
2630 2879 6.099159 ACTCCTCTGGTTTAAAGTAGTCAC 57.901 41.667 0.00 0.00 0.00 3.67
2631 2880 6.553852 AGAACTCCTCTGGTTTAAAGTAGTCA 59.446 38.462 0.00 0.00 31.12 3.41
2632 2881 6.995364 AGAACTCCTCTGGTTTAAAGTAGTC 58.005 40.000 0.00 0.00 31.12 2.59
2633 2882 6.995364 GAGAACTCCTCTGGTTTAAAGTAGT 58.005 40.000 0.00 0.00 38.86 2.73
2698 2953 0.974010 CCAGCCCATGCATGACCTTT 60.974 55.000 28.31 5.85 41.13 3.11
2731 2986 4.038080 CGCGTGCAAAGTTCCCCC 62.038 66.667 0.00 0.00 0.00 5.40
2733 2988 4.038080 CCCGCGTGCAAAGTTCCC 62.038 66.667 4.92 0.00 0.00 3.97
2757 3013 1.412710 TCTGTCTGACCGAGCAAAAGT 59.587 47.619 5.17 0.00 0.00 2.66
2839 3101 4.192000 GGCATGATATCGAGCCGG 57.808 61.111 18.82 0.00 37.41 6.13
2855 3117 0.818296 AGCCTCTAACGCACTAGTGG 59.182 55.000 23.95 15.85 36.19 4.00
2856 3118 3.633235 CATAGCCTCTAACGCACTAGTG 58.367 50.000 18.93 18.93 0.00 2.74
2858 3120 2.608261 GGCATAGCCTCTAACGCACTAG 60.608 54.545 0.00 0.00 46.69 2.57
2861 3123 2.606275 GGCATAGCCTCTAACGCAC 58.394 57.895 0.00 0.00 46.69 5.34
2894 3157 2.027385 TGAGGATGATGGAGACGTGAG 58.973 52.381 0.00 0.00 0.00 3.51
2911 3174 5.063944 CACGTTCAAAGGAATATCTGGTGAG 59.936 44.000 0.00 0.00 35.05 3.51
2992 3259 4.038642 GGGTTTTGTTATGCTGTTCTTGGA 59.961 41.667 0.00 0.00 0.00 3.53
3003 3270 5.105635 ACATGATCTGCTGGGTTTTGTTATG 60.106 40.000 0.00 0.00 0.00 1.90
3040 3307 3.889815 TCTCATTGCCTAATCACCAAGG 58.110 45.455 0.00 0.00 35.86 3.61
3043 3310 3.494924 CCGATCTCATTGCCTAATCACCA 60.495 47.826 0.00 0.00 0.00 4.17
3129 3671 0.099968 CATGCTGATCCGCCAAACAG 59.900 55.000 6.66 0.00 0.00 3.16
3197 3751 2.036256 ATGACACCCAAGGCAGCC 59.964 61.111 1.84 1.84 0.00 4.85
3207 3761 1.073025 TGGAGTGCCACATGACACC 59.927 57.895 0.00 0.00 39.92 4.16
3208 3762 4.798433 TGGAGTGCCACATGACAC 57.202 55.556 0.00 4.90 39.92 3.67
3337 3902 1.217882 GGATACGTTCCAATGAGGCG 58.782 55.000 0.00 0.00 44.74 5.52
3426 3991 8.759782 AGCGCTGATAAAATATAGGGTAGTATT 58.240 33.333 10.39 0.00 0.00 1.89
3431 3996 5.175859 GCAGCGCTGATAAAATATAGGGTA 58.824 41.667 40.21 0.00 0.00 3.69
3432 3997 4.003648 GCAGCGCTGATAAAATATAGGGT 58.996 43.478 40.21 0.00 0.00 4.34
3433 3998 3.375299 GGCAGCGCTGATAAAATATAGGG 59.625 47.826 40.21 9.53 0.00 3.53
3434 3999 4.002982 TGGCAGCGCTGATAAAATATAGG 58.997 43.478 40.21 10.02 0.00 2.57
3435 4000 4.692625 ACTGGCAGCGCTGATAAAATATAG 59.307 41.667 40.21 22.15 0.00 1.31
3447 4017 0.249784 CTATCATCACTGGCAGCGCT 60.250 55.000 15.89 2.64 0.00 5.92
3450 4023 2.626582 GCCTATCATCACTGGCAGC 58.373 57.895 15.89 0.00 44.34 5.25
3481 4054 7.775053 AACCAGCCTATCAATTACTCAAAAA 57.225 32.000 0.00 0.00 0.00 1.94
3483 4056 7.552687 CACTAACCAGCCTATCAATTACTCAAA 59.447 37.037 0.00 0.00 0.00 2.69
3484 4057 7.047891 CACTAACCAGCCTATCAATTACTCAA 58.952 38.462 0.00 0.00 0.00 3.02
3485 4058 6.408092 CCACTAACCAGCCTATCAATTACTCA 60.408 42.308 0.00 0.00 0.00 3.41
3486 4059 5.992217 CCACTAACCAGCCTATCAATTACTC 59.008 44.000 0.00 0.00 0.00 2.59
3488 4061 5.925509 TCCACTAACCAGCCTATCAATTAC 58.074 41.667 0.00 0.00 0.00 1.89
3489 4062 6.328934 TGATCCACTAACCAGCCTATCAATTA 59.671 38.462 0.00 0.00 0.00 1.40
3493 4066 3.653164 TGATCCACTAACCAGCCTATCA 58.347 45.455 0.00 0.00 0.00 2.15
3496 4069 3.370527 GCTTTGATCCACTAACCAGCCTA 60.371 47.826 0.00 0.00 0.00 3.93
3498 4071 1.745653 GCTTTGATCCACTAACCAGCC 59.254 52.381 0.00 0.00 0.00 4.85
3499 4072 2.421424 CTGCTTTGATCCACTAACCAGC 59.579 50.000 0.00 0.00 0.00 4.85
3500 4073 3.012518 CCTGCTTTGATCCACTAACCAG 58.987 50.000 0.00 0.00 0.00 4.00
3501 4074 2.879756 GCCTGCTTTGATCCACTAACCA 60.880 50.000 0.00 0.00 0.00 3.67
3502 4075 1.745653 GCCTGCTTTGATCCACTAACC 59.254 52.381 0.00 0.00 0.00 2.85
3504 4077 2.618816 CCTGCCTGCTTTGATCCACTAA 60.619 50.000 0.00 0.00 0.00 2.24
3506 4079 0.323178 CCTGCCTGCTTTGATCCACT 60.323 55.000 0.00 0.00 0.00 4.00
3507 4080 1.941999 GCCTGCCTGCTTTGATCCAC 61.942 60.000 0.00 0.00 0.00 4.02
3508 4081 1.679977 GCCTGCCTGCTTTGATCCA 60.680 57.895 0.00 0.00 0.00 3.41
3509 4082 1.664321 CTGCCTGCCTGCTTTGATCC 61.664 60.000 0.00 0.00 0.00 3.36
3510 4083 1.664321 CCTGCCTGCCTGCTTTGATC 61.664 60.000 0.00 0.00 0.00 2.92
3511 4084 1.681327 CCTGCCTGCCTGCTTTGAT 60.681 57.895 0.00 0.00 0.00 2.57
3512 4085 2.282674 CCTGCCTGCCTGCTTTGA 60.283 61.111 0.00 0.00 0.00 2.69
3513 4086 4.065281 GCCTGCCTGCCTGCTTTG 62.065 66.667 0.00 0.00 0.00 2.77
3514 4087 4.608774 TGCCTGCCTGCCTGCTTT 62.609 61.111 2.40 0.00 0.00 3.51
3523 4096 4.377760 ATGCTTGCCTGCCTGCCT 62.378 61.111 1.99 0.00 0.00 4.75
3524 4097 4.143333 CATGCTTGCCTGCCTGCC 62.143 66.667 1.99 0.00 0.00 4.85
3694 4333 2.888834 AATGACAGTGGTTTTGGCAC 57.111 45.000 0.00 0.00 36.16 5.01
3717 4362 5.950023 AGACGGAGGGAGTATTATAAGTGA 58.050 41.667 0.00 0.00 0.00 3.41
3718 4363 6.374894 CCTAGACGGAGGGAGTATTATAAGTG 59.625 46.154 0.00 0.00 32.39 3.16
3719 4364 6.045341 ACCTAGACGGAGGGAGTATTATAAGT 59.955 42.308 5.42 0.00 41.36 2.24
3720 4365 6.374894 CACCTAGACGGAGGGAGTATTATAAG 59.625 46.154 5.42 0.00 41.36 1.73
3722 4367 5.311649 ACACCTAGACGGAGGGAGTATTATA 59.688 44.000 5.42 0.00 41.36 0.98
3723 4368 4.106019 ACACCTAGACGGAGGGAGTATTAT 59.894 45.833 5.42 0.00 41.36 1.28
3724 4369 3.461085 ACACCTAGACGGAGGGAGTATTA 59.539 47.826 5.42 0.00 41.36 0.98
3726 4371 1.851653 ACACCTAGACGGAGGGAGTAT 59.148 52.381 5.42 0.00 41.36 2.12
3727 4372 1.064906 CACACCTAGACGGAGGGAGTA 60.065 57.143 5.42 0.00 41.36 2.59
3728 4373 0.323542 CACACCTAGACGGAGGGAGT 60.324 60.000 5.42 1.31 41.36 3.85
3730 4375 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
3731 4376 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
3732 4377 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
3733 4378 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
3735 4380 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
3736 4381 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
3756 4401 8.705134 GTTTTGGGATTATTTGGTTTTCGTAAG 58.295 33.333 0.00 0.00 0.00 2.34
3757 4402 8.202137 TGTTTTGGGATTATTTGGTTTTCGTAA 58.798 29.630 0.00 0.00 0.00 3.18
3759 4404 6.583562 TGTTTTGGGATTATTTGGTTTTCGT 58.416 32.000 0.00 0.00 0.00 3.85
3760 4405 7.665561 ATGTTTTGGGATTATTTGGTTTTCG 57.334 32.000 0.00 0.00 0.00 3.46
3774 4457 1.889829 CCGTGCCTAAATGTTTTGGGA 59.110 47.619 6.57 0.70 34.31 4.37
3775 4458 1.616374 ACCGTGCCTAAATGTTTTGGG 59.384 47.619 7.81 2.54 34.31 4.12
3776 4459 2.671596 CACCGTGCCTAAATGTTTTGG 58.328 47.619 2.22 2.22 36.36 3.28
3777 4460 2.058057 GCACCGTGCCTAAATGTTTTG 58.942 47.619 12.80 0.00 37.42 2.44
3779 4462 1.323412 TGCACCGTGCCTAAATGTTT 58.677 45.000 20.67 0.00 44.23 2.83
3781 4464 1.544724 AATGCACCGTGCCTAAATGT 58.455 45.000 20.67 0.00 44.23 2.71
3782 4465 3.773860 TTAATGCACCGTGCCTAAATG 57.226 42.857 20.67 0.00 44.23 2.32
3783 4466 5.127031 AGAATTTAATGCACCGTGCCTAAAT 59.873 36.000 22.82 22.82 44.23 1.40
3785 4468 4.013728 AGAATTTAATGCACCGTGCCTAA 58.986 39.130 20.67 14.49 44.23 2.69
3786 4469 3.616219 AGAATTTAATGCACCGTGCCTA 58.384 40.909 20.67 9.40 44.23 3.93
3787 4470 2.446435 AGAATTTAATGCACCGTGCCT 58.554 42.857 20.67 8.34 44.23 4.75
3788 4471 2.939460 AGAATTTAATGCACCGTGCC 57.061 45.000 20.67 2.68 44.23 5.01
3789 4472 3.377172 AGGTAGAATTTAATGCACCGTGC 59.623 43.478 16.93 16.93 45.29 5.34
3790 4473 4.260212 CGAGGTAGAATTTAATGCACCGTG 60.260 45.833 0.00 0.00 0.00 4.94
3791 4474 3.869246 CGAGGTAGAATTTAATGCACCGT 59.131 43.478 0.00 0.00 0.00 4.83
3792 4475 3.869246 ACGAGGTAGAATTTAATGCACCG 59.131 43.478 0.00 0.00 0.00 4.94
3793 4476 5.813080 AACGAGGTAGAATTTAATGCACC 57.187 39.130 0.00 0.00 0.00 5.01
3794 4477 7.073342 AGAAACGAGGTAGAATTTAATGCAC 57.927 36.000 0.00 0.00 0.00 4.57
3795 4478 7.526608 CAAGAAACGAGGTAGAATTTAATGCA 58.473 34.615 0.00 0.00 0.00 3.96
3796 4479 6.469275 GCAAGAAACGAGGTAGAATTTAATGC 59.531 38.462 0.00 0.00 0.00 3.56
3797 4480 7.752695 AGCAAGAAACGAGGTAGAATTTAATG 58.247 34.615 0.00 0.00 0.00 1.90
3798 4481 7.923414 AGCAAGAAACGAGGTAGAATTTAAT 57.077 32.000 0.00 0.00 0.00 1.40
3799 4482 7.660208 AGAAGCAAGAAACGAGGTAGAATTTAA 59.340 33.333 0.00 0.00 0.00 1.52
3800 4483 7.159372 AGAAGCAAGAAACGAGGTAGAATTTA 58.841 34.615 0.00 0.00 0.00 1.40
3801 4484 5.998363 AGAAGCAAGAAACGAGGTAGAATTT 59.002 36.000 0.00 0.00 0.00 1.82
3802 4485 5.552178 AGAAGCAAGAAACGAGGTAGAATT 58.448 37.500 0.00 0.00 0.00 2.17
3803 4486 5.153950 AGAAGCAAGAAACGAGGTAGAAT 57.846 39.130 0.00 0.00 0.00 2.40
3804 4487 4.602340 AGAAGCAAGAAACGAGGTAGAA 57.398 40.909 0.00 0.00 0.00 2.10
3805 4488 4.038763 TCAAGAAGCAAGAAACGAGGTAGA 59.961 41.667 0.00 0.00 0.00 2.59
3806 4489 4.150804 GTCAAGAAGCAAGAAACGAGGTAG 59.849 45.833 0.00 0.00 0.00 3.18
3807 4490 4.056050 GTCAAGAAGCAAGAAACGAGGTA 58.944 43.478 0.00 0.00 0.00 3.08
3808 4491 2.872858 GTCAAGAAGCAAGAAACGAGGT 59.127 45.455 0.00 0.00 0.00 3.85
3809 4492 2.872245 TGTCAAGAAGCAAGAAACGAGG 59.128 45.455 0.00 0.00 0.00 4.63
3810 4493 4.739046 ATGTCAAGAAGCAAGAAACGAG 57.261 40.909 0.00 0.00 0.00 4.18
3811 4494 5.931724 TGATATGTCAAGAAGCAAGAAACGA 59.068 36.000 0.00 0.00 0.00 3.85
3812 4495 6.169419 TGATATGTCAAGAAGCAAGAAACG 57.831 37.500 0.00 0.00 0.00 3.60
3813 4496 6.803807 GGTTGATATGTCAAGAAGCAAGAAAC 59.196 38.462 4.98 0.00 44.58 2.78
3814 4497 6.489700 TGGTTGATATGTCAAGAAGCAAGAAA 59.510 34.615 4.98 0.00 44.58 2.52
3815 4498 6.003326 TGGTTGATATGTCAAGAAGCAAGAA 58.997 36.000 4.98 0.00 44.58 2.52
3816 4499 5.559770 TGGTTGATATGTCAAGAAGCAAGA 58.440 37.500 4.98 0.00 44.58 3.02
3817 4500 5.885230 TGGTTGATATGTCAAGAAGCAAG 57.115 39.130 4.98 0.00 44.58 4.01
3818 4501 6.839124 ATTGGTTGATATGTCAAGAAGCAA 57.161 33.333 4.98 7.34 44.58 3.91
3819 4502 7.828717 TCTTATTGGTTGATATGTCAAGAAGCA 59.171 33.333 4.98 0.00 44.58 3.91
3820 4503 8.213518 TCTTATTGGTTGATATGTCAAGAAGC 57.786 34.615 4.98 0.00 44.58 3.86
3821 4504 9.605275 TCTCTTATTGGTTGATATGTCAAGAAG 57.395 33.333 4.98 5.15 44.58 2.85
3823 4506 9.551734 CATCTCTTATTGGTTGATATGTCAAGA 57.448 33.333 4.98 0.00 44.58 3.02
3824 4507 9.334947 ACATCTCTTATTGGTTGATATGTCAAG 57.665 33.333 4.98 0.00 44.58 3.02
3825 4508 9.112725 CACATCTCTTATTGGTTGATATGTCAA 57.887 33.333 0.03 0.03 41.89 3.18
3828 4511 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
3830 4513 6.103205 ACCCCACATCTCTTATTGGTTGATAT 59.897 38.462 0.00 0.00 0.00 1.63
3833 4516 3.591527 ACCCCACATCTCTTATTGGTTGA 59.408 43.478 0.00 0.00 0.00 3.18
3836 4525 2.919602 ACACCCCACATCTCTTATTGGT 59.080 45.455 0.00 0.00 0.00 3.67
3838 4527 2.684881 GCACACCCCACATCTCTTATTG 59.315 50.000 0.00 0.00 0.00 1.90
3843 4532 0.034767 CATGCACACCCCACATCTCT 60.035 55.000 0.00 0.00 0.00 3.10
3848 4537 0.749649 GAAAACATGCACACCCCACA 59.250 50.000 0.00 0.00 0.00 4.17
3850 4539 1.489481 TTGAAAACATGCACACCCCA 58.511 45.000 0.00 0.00 0.00 4.96
3853 4542 3.981211 AGTCATTGAAAACATGCACACC 58.019 40.909 0.00 0.00 0.00 4.16
3855 4544 5.067544 TCTCAAGTCATTGAAAACATGCACA 59.932 36.000 0.00 0.00 44.68 4.57
3856 4545 5.400485 GTCTCAAGTCATTGAAAACATGCAC 59.600 40.000 0.00 0.00 44.68 4.57
3860 4549 6.998074 TGGTAGTCTCAAGTCATTGAAAACAT 59.002 34.615 0.00 0.00 44.68 2.71
3864 4553 6.826231 TGTTTGGTAGTCTCAAGTCATTGAAA 59.174 34.615 0.00 0.00 44.68 2.69
3866 4555 5.758296 GTGTTTGGTAGTCTCAAGTCATTGA 59.242 40.000 0.00 0.00 43.20 2.57
3867 4556 5.333339 CGTGTTTGGTAGTCTCAAGTCATTG 60.333 44.000 0.00 0.00 37.80 2.82
3868 4557 4.750098 CGTGTTTGGTAGTCTCAAGTCATT 59.250 41.667 0.00 0.00 0.00 2.57
3869 4558 4.038763 TCGTGTTTGGTAGTCTCAAGTCAT 59.961 41.667 0.00 0.00 0.00 3.06
3871 4560 3.734735 GTCGTGTTTGGTAGTCTCAAGTC 59.265 47.826 0.00 0.00 0.00 3.01
3872 4561 3.131577 TGTCGTGTTTGGTAGTCTCAAGT 59.868 43.478 0.00 0.00 0.00 3.16
3877 4566 2.224185 TGCATGTCGTGTTTGGTAGTCT 60.224 45.455 0.00 0.00 0.00 3.24
3878 4567 2.139917 TGCATGTCGTGTTTGGTAGTC 58.860 47.619 0.00 0.00 0.00 2.59
3879 4568 2.143122 CTGCATGTCGTGTTTGGTAGT 58.857 47.619 0.00 0.00 0.00 2.73
3880 4569 2.096268 CACTGCATGTCGTGTTTGGTAG 60.096 50.000 7.95 0.00 0.00 3.18
3881 4570 1.870402 CACTGCATGTCGTGTTTGGTA 59.130 47.619 7.95 0.00 0.00 3.25
3882 4571 0.662619 CACTGCATGTCGTGTTTGGT 59.337 50.000 7.95 0.00 0.00 3.67
3883 4572 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.000 13.12 0.00 0.00 3.28
3885 4574 0.819259 AGCCACTGCATGTCGTGTTT 60.819 50.000 13.12 1.83 41.13 2.83
3886 4575 0.034756 TAGCCACTGCATGTCGTGTT 59.965 50.000 13.12 6.12 41.13 3.32
3889 4578 0.390340 CACTAGCCACTGCATGTCGT 60.390 55.000 0.00 0.00 41.13 4.34
3890 4579 1.699656 GCACTAGCCACTGCATGTCG 61.700 60.000 0.00 0.00 41.13 4.35
3891 4580 0.674581 TGCACTAGCCACTGCATGTC 60.675 55.000 1.83 0.00 38.49 3.06
3892 4581 1.376086 TGCACTAGCCACTGCATGT 59.624 52.632 1.83 0.00 38.49 3.21
3893 4582 4.306767 TGCACTAGCCACTGCATG 57.693 55.556 1.83 0.00 38.49 4.06
3896 4585 1.138247 GCAATGCACTAGCCACTGC 59.862 57.895 0.00 2.34 41.13 4.40
3898 4587 1.100510 CATGCAATGCACTAGCCACT 58.899 50.000 11.23 0.00 43.04 4.00
3932 5048 8.723942 ACGAGAGAACTTAATATTCATTTGCT 57.276 30.769 0.00 0.00 0.00 3.91
3941 5057 7.196637 AGGGGAAAACGAGAGAACTTAATAT 57.803 36.000 0.00 0.00 0.00 1.28
3944 5060 4.262765 GGAGGGGAAAACGAGAGAACTTAA 60.263 45.833 0.00 0.00 0.00 1.85
3947 5063 1.624312 GGAGGGGAAAACGAGAGAACT 59.376 52.381 0.00 0.00 0.00 3.01
3954 5070 0.690762 CAAGGAGGAGGGGAAAACGA 59.309 55.000 0.00 0.00 0.00 3.85
3955 5071 0.322546 CCAAGGAGGAGGGGAAAACG 60.323 60.000 0.00 0.00 41.22 3.60
3959 5075 0.840722 GTGACCAAGGAGGAGGGGAA 60.841 60.000 0.00 0.00 41.22 3.97
3961 5077 2.660064 CGTGACCAAGGAGGAGGGG 61.660 68.421 0.00 0.00 41.22 4.79
3962 5078 2.660064 CCGTGACCAAGGAGGAGGG 61.660 68.421 0.00 0.00 41.22 4.30
3963 5079 1.913762 ACCGTGACCAAGGAGGAGG 60.914 63.158 8.91 0.00 41.22 4.30
3966 5082 2.358737 GCACCGTGACCAAGGAGG 60.359 66.667 8.91 2.33 45.67 4.30
3967 5083 1.961277 GTGCACCGTGACCAAGGAG 60.961 63.158 5.22 2.30 33.97 3.69
3970 5086 1.355210 GTTGTGCACCGTGACCAAG 59.645 57.895 15.69 0.00 0.00 3.61
3972 5088 2.515057 GGTTGTGCACCGTGACCA 60.515 61.111 15.69 0.00 35.12 4.02
3980 5096 6.017440 TGAGTAAGTCATTTTAGGTTGTGCAC 60.017 38.462 10.75 10.75 0.00 4.57
3981 5097 6.017440 GTGAGTAAGTCATTTTAGGTTGTGCA 60.017 38.462 0.00 0.00 37.56 4.57
3982 5098 6.371389 GTGAGTAAGTCATTTTAGGTTGTGC 58.629 40.000 0.00 0.00 37.56 4.57
3983 5099 6.710744 AGGTGAGTAAGTCATTTTAGGTTGTG 59.289 38.462 0.00 0.00 37.56 3.33
3984 5100 6.838382 AGGTGAGTAAGTCATTTTAGGTTGT 58.162 36.000 0.00 0.00 37.56 3.32
3985 5101 8.311836 TCTAGGTGAGTAAGTCATTTTAGGTTG 58.688 37.037 0.00 0.00 37.56 3.77
3986 5102 8.312564 GTCTAGGTGAGTAAGTCATTTTAGGTT 58.687 37.037 0.00 0.00 37.56 3.50
3987 5103 7.362747 CGTCTAGGTGAGTAAGTCATTTTAGGT 60.363 40.741 0.00 0.00 37.56 3.08
3988 5104 6.973474 CGTCTAGGTGAGTAAGTCATTTTAGG 59.027 42.308 0.00 0.00 37.56 2.69
3989 5105 6.973474 CCGTCTAGGTGAGTAAGTCATTTTAG 59.027 42.308 0.00 0.00 37.56 1.85
3990 5106 6.660521 TCCGTCTAGGTGAGTAAGTCATTTTA 59.339 38.462 0.00 0.00 41.99 1.52
3991 5107 5.479375 TCCGTCTAGGTGAGTAAGTCATTTT 59.521 40.000 0.00 0.00 41.99 1.82
3992 5108 5.014858 TCCGTCTAGGTGAGTAAGTCATTT 58.985 41.667 0.00 0.00 41.99 2.32
3993 5109 4.597004 TCCGTCTAGGTGAGTAAGTCATT 58.403 43.478 0.00 0.00 41.99 2.57
3994 5110 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
3995 5111 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
3996 5112 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
3997 5113 2.356947 CCCTCCGTCTAGGTGAGTAAGT 60.357 54.545 0.00 0.00 41.99 2.24
3998 5114 2.092538 TCCCTCCGTCTAGGTGAGTAAG 60.093 54.545 0.00 0.00 41.99 2.34
3999 5115 1.918262 TCCCTCCGTCTAGGTGAGTAA 59.082 52.381 0.00 0.00 41.99 2.24
4000 5116 1.489649 CTCCCTCCGTCTAGGTGAGTA 59.510 57.143 0.00 0.00 41.99 2.59
4001 5117 0.256464 CTCCCTCCGTCTAGGTGAGT 59.744 60.000 0.00 0.00 41.99 3.41
4002 5118 0.256464 ACTCCCTCCGTCTAGGTGAG 59.744 60.000 0.00 0.00 41.99 3.51
4003 5119 1.211457 GTACTCCCTCCGTCTAGGTGA 59.789 57.143 0.00 0.00 41.99 4.02
4004 5120 1.212441 AGTACTCCCTCCGTCTAGGTG 59.788 57.143 0.00 0.00 41.99 4.00
4005 5121 1.594129 AGTACTCCCTCCGTCTAGGT 58.406 55.000 0.00 0.00 41.99 3.08
4006 5122 2.705127 AGTAGTACTCCCTCCGTCTAGG 59.295 54.545 0.00 0.00 42.97 3.02
4007 5123 3.387374 TCAGTAGTACTCCCTCCGTCTAG 59.613 52.174 0.00 0.00 0.00 2.43
4008 5124 3.378512 TCAGTAGTACTCCCTCCGTCTA 58.621 50.000 0.00 0.00 0.00 2.59
4009 5125 2.194859 TCAGTAGTACTCCCTCCGTCT 58.805 52.381 0.00 0.00 0.00 4.18
4010 5126 2.706339 TCAGTAGTACTCCCTCCGTC 57.294 55.000 0.00 0.00 0.00 4.79
4011 5127 2.508716 TCATCAGTAGTACTCCCTCCGT 59.491 50.000 0.00 0.00 0.00 4.69
4012 5128 3.210232 TCATCAGTAGTACTCCCTCCG 57.790 52.381 0.00 0.00 0.00 4.63
4013 5129 4.339814 CACTTCATCAGTAGTACTCCCTCC 59.660 50.000 0.00 0.00 32.76 4.30
4014 5130 4.951094 ACACTTCATCAGTAGTACTCCCTC 59.049 45.833 0.00 0.00 32.76 4.30
4015 5131 4.936802 ACACTTCATCAGTAGTACTCCCT 58.063 43.478 0.00 0.00 32.76 4.20
4016 5132 5.652518 GAACACTTCATCAGTAGTACTCCC 58.347 45.833 0.00 0.00 32.76 4.30
4017 5133 5.333513 CGAACACTTCATCAGTAGTACTCC 58.666 45.833 0.00 0.00 32.76 3.85
4018 5134 5.106237 ACCGAACACTTCATCAGTAGTACTC 60.106 44.000 0.00 0.00 32.76 2.59
4019 5135 4.765856 ACCGAACACTTCATCAGTAGTACT 59.234 41.667 0.00 0.00 32.76 2.73
4020 5136 5.056894 ACCGAACACTTCATCAGTAGTAC 57.943 43.478 0.00 0.00 32.76 2.73
4021 5137 5.717078 AACCGAACACTTCATCAGTAGTA 57.283 39.130 0.00 0.00 32.76 1.82
4022 5138 4.602340 AACCGAACACTTCATCAGTAGT 57.398 40.909 0.00 0.00 32.76 2.73
4023 5139 7.596749 AATTAACCGAACACTTCATCAGTAG 57.403 36.000 0.00 0.00 32.76 2.57
4177 5303 1.409802 GGTGAGTACTCGATCTGGGGA 60.410 57.143 17.85 0.00 0.00 4.81
4195 5321 0.540365 CAATGGCTGGTTCACCTGGT 60.540 55.000 0.00 0.00 35.73 4.00
4208 5334 2.856222 AGGCTACAGATTAGCAATGGC 58.144 47.619 5.69 0.00 42.06 4.40
4216 5342 7.801104 TGTGGAAATTGATAGGCTACAGATTA 58.199 34.615 0.00 0.00 0.00 1.75
4225 5351 7.765819 AGCTAAATTTTGTGGAAATTGATAGGC 59.234 33.333 0.00 0.00 44.98 3.93
4226 5352 9.305925 GAGCTAAATTTTGTGGAAATTGATAGG 57.694 33.333 0.00 0.00 44.98 2.57
4230 5356 6.976088 TCGAGCTAAATTTTGTGGAAATTGA 58.024 32.000 0.00 0.00 44.98 2.57
4231 5357 7.329226 ACATCGAGCTAAATTTTGTGGAAATTG 59.671 33.333 0.00 0.00 44.98 2.32
4252 5378 1.797046 GCTGGACTGCATGATACATCG 59.203 52.381 0.00 0.00 0.00 3.84
4277 5403 7.456684 AGATCGAGTTCAGAAATGTTTATCG 57.543 36.000 0.00 0.00 0.00 2.92
4280 5406 9.273016 AGAAAAGATCGAGTTCAGAAATGTTTA 57.727 29.630 0.00 0.00 0.00 2.01
4303 5429 2.422597 CACCTGCGTTGGTATTCAGAA 58.577 47.619 1.37 0.00 38.45 3.02
4305 5431 1.086696 CCACCTGCGTTGGTATTCAG 58.913 55.000 1.37 0.00 38.45 3.02
4306 5432 0.958382 GCCACCTGCGTTGGTATTCA 60.958 55.000 1.37 0.00 38.45 2.57
4307 5433 1.654023 GGCCACCTGCGTTGGTATTC 61.654 60.000 0.00 0.00 42.61 1.75
4309 5435 2.045340 GGCCACCTGCGTTGGTAT 60.045 61.111 0.00 0.00 42.61 2.73
4310 5436 3.246112 AGGCCACCTGCGTTGGTA 61.246 61.111 5.01 0.00 42.61 3.25
4311 5437 4.954970 CAGGCCACCTGCGTTGGT 62.955 66.667 5.01 0.00 45.13 3.67
4543 5702 1.657538 CGTCAGTCAGTTTGCTTTCGC 60.658 52.381 0.00 0.00 0.00 4.70
4546 5705 0.304705 CGCGTCAGTCAGTTTGCTTT 59.695 50.000 0.00 0.00 0.00 3.51
4547 5706 1.934463 CGCGTCAGTCAGTTTGCTT 59.066 52.632 0.00 0.00 0.00 3.91
4548 5707 2.598632 GCGCGTCAGTCAGTTTGCT 61.599 57.895 8.43 0.00 0.00 3.91
4549 5708 2.127609 GCGCGTCAGTCAGTTTGC 60.128 61.111 8.43 0.00 0.00 3.68
4550 5709 2.551270 GGCGCGTCAGTCAGTTTG 59.449 61.111 5.47 0.00 0.00 2.93
4552 5711 3.575351 GAGGGCGCGTCAGTCAGTT 62.575 63.158 14.93 0.00 0.00 3.16
4554 5713 4.803426 GGAGGGCGCGTCAGTCAG 62.803 72.222 14.93 0.00 0.00 3.51
4570 5730 1.524008 GGCAGAGGAAACAAACCGGG 61.524 60.000 6.32 0.00 0.00 5.73
4915 6075 2.231380 ATCGGACTGGGGCAGGTTT 61.231 57.895 0.00 0.00 35.51 3.27
5075 6240 7.270793 GCATCCGTTACACGTAGAAATATAGAG 59.729 40.741 0.00 0.00 40.58 2.43
5078 6243 6.151691 GGCATCCGTTACACGTAGAAATATA 58.848 40.000 0.00 0.00 40.58 0.86
5079 6244 4.986659 GGCATCCGTTACACGTAGAAATAT 59.013 41.667 0.00 0.00 40.58 1.28
5082 6247 2.609350 GGCATCCGTTACACGTAGAAA 58.391 47.619 0.00 0.00 40.58 2.52
5181 6355 4.820897 TGTGTGACAGTAGAACCATGATC 58.179 43.478 0.00 0.00 0.00 2.92
5214 6388 9.979578 GCTAAACCTAGGATGATGATGATATAG 57.020 37.037 17.98 0.00 0.00 1.31
5227 6406 4.357918 AATGCGATGCTAAACCTAGGAT 57.642 40.909 17.98 0.00 38.79 3.24
5260 6439 2.104928 GCGGCCATTAGCAAAGGC 59.895 61.111 2.24 6.59 46.50 4.35
5261 6440 1.322538 AAGGCGGCCATTAGCAAAGG 61.323 55.000 23.09 0.00 46.50 3.11
5262 6441 0.101219 GAAGGCGGCCATTAGCAAAG 59.899 55.000 23.09 0.00 46.50 2.77
5263 6442 0.323360 AGAAGGCGGCCATTAGCAAA 60.323 50.000 23.09 0.00 46.50 3.68
5265 6444 0.748005 GAAGAAGGCGGCCATTAGCA 60.748 55.000 23.09 0.00 46.50 3.49
5266 6445 0.464554 AGAAGAAGGCGGCCATTAGC 60.465 55.000 23.09 7.43 42.60 3.09
5267 6446 1.672881 CAAGAAGAAGGCGGCCATTAG 59.327 52.381 23.09 3.33 0.00 1.73
5268 6447 1.004277 ACAAGAAGAAGGCGGCCATTA 59.996 47.619 23.09 0.00 0.00 1.90
5285 6464 4.083855 GCGATGACATTGACTTCTCAACAA 60.084 41.667 6.88 0.00 39.28 2.83
5286 6465 3.433274 GCGATGACATTGACTTCTCAACA 59.567 43.478 6.88 0.00 39.28 3.33
5313 6492 7.759433 ACTTTCTTGTGATTGGTTGTTTTACTG 59.241 33.333 0.00 0.00 0.00 2.74
5330 6509 2.014128 CGGTGTCCACAACTTTCTTGT 58.986 47.619 0.00 0.00 0.00 3.16
5467 6678 5.471456 AGCTTGGAATGTTCAAGTAGAGTTG 59.529 40.000 0.00 0.00 42.44 3.16
5542 6766 1.271325 TGTCTACCAACGGACGAGGTA 60.271 52.381 15.65 15.65 36.87 3.08
5547 6771 1.068125 TGACATGTCTACCAACGGACG 60.068 52.381 25.55 0.00 35.45 4.79
5582 6806 1.507141 CCAGAAAAAGACGCGGCACT 61.507 55.000 17.71 5.72 0.00 4.40
5605 6829 1.755783 GATTCCAGCAAGGGCCCAG 60.756 63.158 27.56 17.84 42.56 4.45
5654 6878 3.300388 TGATGAGGAGGAGATGTACACC 58.700 50.000 0.00 0.00 0.00 4.16
5656 6880 5.303845 CAGAATGATGAGGAGGAGATGTACA 59.696 44.000 0.00 0.00 39.69 2.90
5765 7025 1.144057 ATGGGTTCGTCCTCATCGC 59.856 57.895 0.30 0.00 36.25 4.58
5823 7083 4.974989 ACGAAACCCCGACGCCAC 62.975 66.667 0.00 0.00 0.00 5.01
5854 7114 1.548357 ATTCGAGTGCCAGCTGACCT 61.548 55.000 17.39 7.41 0.00 3.85
5935 7201 1.613437 CGTGGCATTTTCTTCCCTGTT 59.387 47.619 0.00 0.00 0.00 3.16
5941 7207 1.801512 GCGCCGTGGCATTTTCTTC 60.802 57.895 12.06 0.00 42.06 2.87
5942 7208 2.258286 GCGCCGTGGCATTTTCTT 59.742 55.556 12.06 0.00 42.06 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.