Multiple sequence alignment - TraesCS7B01G111000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G111000 chr7B 100.000 9237 0 0 1 9237 127013635 127022871 0.000000e+00 17058.0
1 TraesCS7B01G111000 chr7B 100.000 28 0 0 4502 4529 371726187 371726214 1.700000e-02 52.8
2 TraesCS7B01G111000 chr7A 94.038 5267 204 32 3351 8592 166326412 166331593 0.000000e+00 7886.0
3 TraesCS7B01G111000 chr7A 92.019 2506 136 32 843 3325 166323834 166326298 0.000000e+00 3461.0
4 TraesCS7B01G111000 chr7A 91.197 284 7 14 8957 9237 166331823 166332091 4.070000e-98 370.0
5 TraesCS7B01G111000 chr7A 90.511 137 13 0 3215 3351 503428825 503428689 2.050000e-41 182.0
6 TraesCS7B01G111000 chr7A 89.394 66 4 2 741 803 166295644 166295709 7.690000e-11 80.5
7 TraesCS7B01G111000 chr7D 95.808 3745 116 16 4604 8341 164637722 164641432 0.000000e+00 6008.0
8 TraesCS7B01G111000 chr7D 93.946 2709 113 23 679 3351 164633705 164636398 0.000000e+00 4047.0
9 TraesCS7B01G111000 chr7D 92.333 1239 49 10 3351 4576 164636522 164637727 0.000000e+00 1720.0
10 TraesCS7B01G111000 chr7D 95.084 651 30 2 7 656 159906928 159906279 0.000000e+00 1024.0
11 TraesCS7B01G111000 chr7D 88.793 348 24 4 8896 9237 164642924 164643262 6.670000e-111 412.0
12 TraesCS7B01G111000 chr7D 93.919 148 8 1 8394 8541 164641438 164641584 1.210000e-53 222.0
13 TraesCS7B01G111000 chr7D 96.078 102 3 1 8598 8699 164642285 164642385 2.060000e-36 165.0
14 TraesCS7B01G111000 chr2A 96.960 658 19 1 1 658 65659393 65658737 0.000000e+00 1103.0
15 TraesCS7B01G111000 chr2A 94.954 654 33 0 1 654 775173229 775173882 0.000000e+00 1026.0
16 TraesCS7B01G111000 chr2A 90.580 138 12 1 3214 3351 522519020 522518884 2.050000e-41 182.0
17 TraesCS7B01G111000 chr2A 91.549 71 4 2 3353 3421 530353161 530353231 7.630000e-16 97.1
18 TraesCS7B01G111000 chr1B 97.099 655 18 1 1 654 40179031 40179685 0.000000e+00 1103.0
19 TraesCS7B01G111000 chr3B 96.951 656 20 0 1 656 422162988 422163643 0.000000e+00 1101.0
20 TraesCS7B01G111000 chr6D 97.201 643 18 0 10 652 356247805 356247163 0.000000e+00 1088.0
21 TraesCS7B01G111000 chr5D 96.478 653 23 0 1 653 67920512 67921164 0.000000e+00 1079.0
22 TraesCS7B01G111000 chr2B 96.142 648 24 1 9 655 35363200 35362553 0.000000e+00 1057.0
23 TraesCS7B01G111000 chr5A 95.566 654 28 1 1 654 534905317 534904665 0.000000e+00 1046.0
24 TraesCS7B01G111000 chr5A 96.721 61 2 0 3352 3412 438145360 438145300 1.640000e-17 102.0
25 TraesCS7B01G111000 chrUn 90.511 137 13 0 3215 3351 129560447 129560583 2.050000e-41 182.0
26 TraesCS7B01G111000 chrUn 96.721 61 2 0 3353 3413 253162522 253162582 1.640000e-17 102.0
27 TraesCS7B01G111000 chr6A 90.580 138 12 1 3215 3351 556974966 556974829 2.050000e-41 182.0
28 TraesCS7B01G111000 chr2D 90.511 137 13 0 3215 3351 143486349 143486213 2.050000e-41 182.0
29 TraesCS7B01G111000 chr3D 89.781 137 14 0 3215 3351 236661938 236662074 9.530000e-40 176.0
30 TraesCS7B01G111000 chr1D 89.706 136 14 0 3214 3349 267798920 267798785 3.430000e-39 174.0
31 TraesCS7B01G111000 chr1D 96.774 62 2 0 3352 3413 150941745 150941684 4.560000e-18 104.0
32 TraesCS7B01G111000 chr5B 96.774 62 2 0 3352 3413 394973723 394973662 4.560000e-18 104.0
33 TraesCS7B01G111000 chr5B 96.774 62 2 0 3352 3413 575816128 575816067 4.560000e-18 104.0
34 TraesCS7B01G111000 chr5B 96.721 61 2 0 3351 3411 202204724 202204664 1.640000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G111000 chr7B 127013635 127022871 9236 False 17058.000000 17058 100.0000 1 9237 1 chr7B.!!$F1 9236
1 TraesCS7B01G111000 chr7A 166323834 166332091 8257 False 3905.666667 7886 92.4180 843 9237 3 chr7A.!!$F2 8394
2 TraesCS7B01G111000 chr7D 164633705 164643262 9557 False 2095.666667 6008 93.4795 679 9237 6 chr7D.!!$F1 8558
3 TraesCS7B01G111000 chr7D 159906279 159906928 649 True 1024.000000 1024 95.0840 7 656 1 chr7D.!!$R1 649
4 TraesCS7B01G111000 chr2A 65658737 65659393 656 True 1103.000000 1103 96.9600 1 658 1 chr2A.!!$R1 657
5 TraesCS7B01G111000 chr2A 775173229 775173882 653 False 1026.000000 1026 94.9540 1 654 1 chr2A.!!$F2 653
6 TraesCS7B01G111000 chr1B 40179031 40179685 654 False 1103.000000 1103 97.0990 1 654 1 chr1B.!!$F1 653
7 TraesCS7B01G111000 chr3B 422162988 422163643 655 False 1101.000000 1101 96.9510 1 656 1 chr3B.!!$F1 655
8 TraesCS7B01G111000 chr6D 356247163 356247805 642 True 1088.000000 1088 97.2010 10 652 1 chr6D.!!$R1 642
9 TraesCS7B01G111000 chr5D 67920512 67921164 652 False 1079.000000 1079 96.4780 1 653 1 chr5D.!!$F1 652
10 TraesCS7B01G111000 chr2B 35362553 35363200 647 True 1057.000000 1057 96.1420 9 655 1 chr2B.!!$R1 646
11 TraesCS7B01G111000 chr5A 534904665 534905317 652 True 1046.000000 1046 95.5660 1 654 1 chr5A.!!$R2 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 996 0.317020 GAAGCTCAAAAACACGCGCT 60.317 50.000 5.73 0.0 0.00 5.92 F
991 1003 1.228657 AAAAACACGCGCTCTCTCCC 61.229 55.000 5.73 0.0 0.00 4.30 F
2273 2321 0.834612 ACCAGTGAACCAGTTCGGAA 59.165 50.000 9.17 0.0 42.28 4.30 F
2371 2419 0.896940 AGCCAGTTGACCAATGCCTG 60.897 55.000 0.00 0.0 0.00 4.85 F
3769 3944 0.106268 TGGCCACCACAAACACTGAT 60.106 50.000 0.00 0.0 0.00 2.90 F
3829 4004 0.681175 AAGCAACCAAACATGCCCTC 59.319 50.000 0.00 0.0 43.57 4.30 F
5080 5304 1.626654 CGGAGGCTGCAACAACTACG 61.627 60.000 6.86 0.0 0.00 3.51 F
5899 6131 0.957395 AAGGCACAGCAATCAGACCG 60.957 55.000 0.00 0.0 0.00 4.79 F
6346 6578 1.134848 GCTCCTGTGGACATCTCTGAC 60.135 57.143 0.00 0.0 0.00 3.51 F
7535 7770 0.176910 TCAAGCCGACGCCATATTCA 59.823 50.000 0.00 0.0 34.57 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2263 2311 0.107703 TATGCTGCCTTCCGAACTGG 60.108 55.000 0.00 0.00 40.09 4.00 R
2683 2731 1.600957 CCAGCATCCTCAGTATTTGCG 59.399 52.381 0.00 0.00 38.32 4.85 R
3769 3944 0.901124 AGTGCCACAAGTTTGCCAAA 59.099 45.000 0.00 0.00 0.00 3.28 R
3863 4038 1.126113 CTACAGTAAGTTTGGCACGCG 59.874 52.381 3.53 3.53 0.00 6.01 R
5363 5587 0.890996 GGACTGGCAGTTCAACTGGG 60.891 60.000 22.98 0.00 46.01 4.45 R
5626 5858 4.701765 CGATCTGGTTTCCATCTTCATCT 58.298 43.478 0.00 0.00 30.82 2.90 R
6245 6477 0.250858 TGTGGACCATGCCAAGTCAG 60.251 55.000 0.00 0.00 40.20 3.51 R
7397 7632 0.604578 GCAGCCAATGTGTTCACCAT 59.395 50.000 0.37 0.00 0.00 3.55 R
8133 8369 0.108396 TGCAAGCTGAAGTGCACCTA 59.892 50.000 14.63 0.00 45.52 3.08 R
8851 9773 0.106819 GCCTGACCTTCATGCTGGAT 60.107 55.000 10.18 0.00 35.54 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
329 330 0.524862 CACCACTTGGCATCTTGCTC 59.475 55.000 0.00 0.00 44.28 4.26
346 347 1.587043 CTCGCTCGGTGAAGGAGTGA 61.587 60.000 5.13 5.13 45.81 3.41
553 554 8.759782 GCTAGAAAGCTAGGGGACATTATATTA 58.240 37.037 0.00 0.00 45.85 0.98
573 574 8.846943 ATATTACGAGAATAATTGTCATGCCA 57.153 30.769 0.00 0.00 0.00 4.92
679 680 3.305709 ACCACGGTGAGTTGATGTG 57.694 52.632 10.28 0.00 0.00 3.21
680 681 0.884704 ACCACGGTGAGTTGATGTGC 60.885 55.000 10.28 0.00 0.00 4.57
681 682 0.603707 CCACGGTGAGTTGATGTGCT 60.604 55.000 10.28 0.00 0.00 4.40
682 683 1.337728 CCACGGTGAGTTGATGTGCTA 60.338 52.381 10.28 0.00 0.00 3.49
683 684 1.726791 CACGGTGAGTTGATGTGCTAC 59.273 52.381 0.74 0.00 0.00 3.58
684 685 0.992072 CGGTGAGTTGATGTGCTACG 59.008 55.000 0.00 0.00 0.00 3.51
685 686 1.668919 CGGTGAGTTGATGTGCTACGT 60.669 52.381 0.00 0.00 0.00 3.57
686 687 2.414957 CGGTGAGTTGATGTGCTACGTA 60.415 50.000 0.00 0.00 0.00 3.57
687 688 2.921754 GGTGAGTTGATGTGCTACGTAC 59.078 50.000 0.00 0.00 0.00 3.67
711 712 4.148348 GCATACGTAGATTGATCGGTTGTC 59.852 45.833 0.08 0.00 0.00 3.18
792 800 4.119862 GTGACACTTGAGAGCAACACTTA 58.880 43.478 0.00 0.00 0.00 2.24
855 867 0.984961 AGCTGATTGGGCCTAGCAGA 60.985 55.000 32.13 0.13 38.59 4.26
922 934 2.039084 AGTTTCAGCCCACGAGAATCTT 59.961 45.455 0.00 0.00 0.00 2.40
944 956 2.225727 CCTTTTTAGAACAGCCCACGAC 59.774 50.000 0.00 0.00 0.00 4.34
953 965 2.202756 GCCCACGACGATCTCCAC 60.203 66.667 0.00 0.00 0.00 4.02
957 969 1.500396 CACGACGATCTCCACACGA 59.500 57.895 0.00 0.00 0.00 4.35
963 975 2.798283 GACGATCTCCACACGAAAAACA 59.202 45.455 0.00 0.00 0.00 2.83
977 989 4.862574 ACGAAAAACAGGAAGCTCAAAAAC 59.137 37.500 0.00 0.00 0.00 2.43
980 992 3.420839 AACAGGAAGCTCAAAAACACG 57.579 42.857 0.00 0.00 0.00 4.49
984 996 0.317020 GAAGCTCAAAAACACGCGCT 60.317 50.000 5.73 0.00 0.00 5.92
991 1003 1.228657 AAAAACACGCGCTCTCTCCC 61.229 55.000 5.73 0.00 0.00 4.30
994 1006 4.200283 CACGCGCTCTCTCCCCTC 62.200 72.222 5.73 0.00 0.00 4.30
997 1009 3.223589 GCGCTCTCTCCCCTCCTC 61.224 72.222 0.00 0.00 0.00 3.71
1050 1082 6.144845 TCTCCCCAAATTCAAAATCTCTCT 57.855 37.500 0.00 0.00 0.00 3.10
1073 1105 4.455137 CCATCCCCACCCTCCCCT 62.455 72.222 0.00 0.00 0.00 4.79
1361 1393 4.824515 CTCCTCCTCCGCCTCCGT 62.825 72.222 0.00 0.00 0.00 4.69
1514 1549 5.614013 CGACAAGTTTCCTCCACGTTTAATC 60.614 44.000 0.00 0.00 0.00 1.75
1516 1551 5.768164 ACAAGTTTCCTCCACGTTTAATCAT 59.232 36.000 0.00 0.00 0.00 2.45
1517 1552 6.264518 ACAAGTTTCCTCCACGTTTAATCATT 59.735 34.615 0.00 0.00 0.00 2.57
1518 1553 6.894339 AGTTTCCTCCACGTTTAATCATTT 57.106 33.333 0.00 0.00 0.00 2.32
1519 1554 7.284919 AGTTTCCTCCACGTTTAATCATTTT 57.715 32.000 0.00 0.00 0.00 1.82
1520 1555 7.145323 AGTTTCCTCCACGTTTAATCATTTTG 58.855 34.615 0.00 0.00 0.00 2.44
1521 1556 5.054390 TCCTCCACGTTTAATCATTTTGC 57.946 39.130 0.00 0.00 0.00 3.68
1523 1558 5.095490 CCTCCACGTTTAATCATTTTGCTC 58.905 41.667 0.00 0.00 0.00 4.26
1558 1606 4.806342 TCGTTTTGCCTAACTTCAGTTC 57.194 40.909 0.00 0.00 39.31 3.01
1563 1611 6.374578 GTTTTGCCTAACTTCAGTTCTCATC 58.625 40.000 0.00 0.00 39.31 2.92
1582 1630 6.305272 TCATCAGAGTATTTGAGGAGCTTT 57.695 37.500 0.00 0.00 31.19 3.51
1587 1635 9.771534 ATCAGAGTATTTGAGGAGCTTTTATAC 57.228 33.333 0.00 0.00 0.00 1.47
1680 1728 7.236019 TCTGGTTACCTCAATTTAGTTCCAGTA 59.764 37.037 2.07 0.00 36.58 2.74
1687 1735 9.239551 ACCTCAATTTAGTTCCAGTATAAAACC 57.760 33.333 0.00 0.00 0.00 3.27
1730 1778 2.054799 GTGATACCTGCTTCCCCCATA 58.945 52.381 0.00 0.00 0.00 2.74
1789 1837 4.167268 GCGTTTTAATTTGCCGGTGAATA 58.833 39.130 1.90 0.00 0.00 1.75
1800 1848 4.255301 TGCCGGTGAATAAGAACGTAATT 58.745 39.130 1.90 0.00 0.00 1.40
1882 1930 5.535753 TCTGACATTGACAGTTCTTCTCA 57.464 39.130 14.29 0.00 36.81 3.27
1906 1954 9.952030 TCATAGATTATTATGCAATTACCGGAA 57.048 29.630 9.46 0.00 32.31 4.30
2178 2226 5.070847 AGGCTTTGTTTGATTTGTGAAGGAT 59.929 36.000 0.00 0.00 0.00 3.24
2273 2321 0.834612 ACCAGTGAACCAGTTCGGAA 59.165 50.000 9.17 0.00 42.28 4.30
2371 2419 0.896940 AGCCAGTTGACCAATGCCTG 60.897 55.000 0.00 0.00 0.00 4.85
2683 2731 5.064834 GCAAACTATCAGGCAGTACTTTACC 59.935 44.000 0.00 0.00 0.00 2.85
2692 2740 3.937079 GGCAGTACTTTACCGCAAATACT 59.063 43.478 0.00 0.00 33.82 2.12
2743 2791 3.800506 GCATGCCTTTTATGTTGCAGATC 59.199 43.478 6.36 0.00 37.12 2.75
3185 3234 6.345096 AGGTAGTGCTGCATGTTTATTTTT 57.655 33.333 5.27 0.00 0.00 1.94
3187 3236 5.925969 GGTAGTGCTGCATGTTTATTTTTGT 59.074 36.000 5.27 0.00 0.00 2.83
3189 3238 4.751098 AGTGCTGCATGTTTATTTTTGTGG 59.249 37.500 5.27 0.00 0.00 4.17
3231 3280 6.367421 TGCGTTTTGTTGAAGTGTATATGTC 58.633 36.000 0.00 0.00 0.00 3.06
3255 3305 2.270434 ACCTAGCCCTTTCCATCAGA 57.730 50.000 0.00 0.00 0.00 3.27
3273 3323 1.537202 AGATCAGACTTTTGGTTGCGC 59.463 47.619 0.00 0.00 0.00 6.09
3325 3375 1.134068 GGGCCCATAGTCTTGAGTTCC 60.134 57.143 19.95 0.00 0.00 3.62
3327 3377 2.026262 GGCCCATAGTCTTGAGTTCCAA 60.026 50.000 0.00 0.00 0.00 3.53
3338 3388 3.243359 TGAGTTCCAATCCTGGCTTTT 57.757 42.857 0.00 0.00 43.17 2.27
3358 3532 3.660970 TGCAATTTATCCACCTAGCCA 57.339 42.857 0.00 0.00 0.00 4.75
3411 3585 4.080356 TGGCTAGTGGATGAAGCTTAACAT 60.080 41.667 0.00 0.00 36.48 2.71
3495 3669 1.539869 AGGACATCCCAGTGCCTGT 60.540 57.895 0.00 0.00 37.41 4.00
3563 3737 4.657814 TGTTTCCTCCTTAATTCTGGCT 57.342 40.909 0.00 0.00 0.00 4.75
3593 3767 1.070445 ACAACCATTGTGCCAATGTGG 59.930 47.619 19.84 13.27 43.48 4.17
3637 3812 5.346551 GCGTGTTTGGTTTGTTTCTAGTTTT 59.653 36.000 0.00 0.00 0.00 2.43
3734 3909 9.421806 TCATTTTGTAGCCAATTTTTATCACAG 57.578 29.630 0.00 0.00 0.00 3.66
3768 3943 0.323816 TTGGCCACCACAAACACTGA 60.324 50.000 3.88 0.00 30.78 3.41
3769 3944 0.106268 TGGCCACCACAAACACTGAT 60.106 50.000 0.00 0.00 0.00 2.90
3801 3976 7.466746 ACTTGTGGCACTGAAATATGTAAAT 57.533 32.000 19.83 0.00 0.00 1.40
3829 4004 0.681175 AAGCAACCAAACATGCCCTC 59.319 50.000 0.00 0.00 43.57 4.30
3863 4038 2.178912 TGCCACAGCTAGGTGTTTAC 57.821 50.000 24.50 16.38 40.80 2.01
4079 4255 2.289010 TGCCACTGACATGTGTCTACAG 60.289 50.000 1.15 6.51 44.99 2.74
4097 4273 7.499563 TGTCTACAGGACTCAACTATCAGTATC 59.500 40.741 0.00 0.00 44.74 2.24
4098 4274 7.499563 GTCTACAGGACTCAACTATCAGTATCA 59.500 40.741 0.00 0.00 41.46 2.15
4099 4275 8.221251 TCTACAGGACTCAACTATCAGTATCAT 58.779 37.037 0.00 0.00 0.00 2.45
4100 4276 7.283625 ACAGGACTCAACTATCAGTATCATC 57.716 40.000 0.00 0.00 0.00 2.92
4101 4277 6.266558 ACAGGACTCAACTATCAGTATCATCC 59.733 42.308 0.00 0.00 0.00 3.51
4102 4278 6.266330 CAGGACTCAACTATCAGTATCATCCA 59.734 42.308 0.00 0.00 0.00 3.41
4103 4279 6.841229 AGGACTCAACTATCAGTATCATCCAA 59.159 38.462 0.00 0.00 0.00 3.53
4104 4280 7.512058 AGGACTCAACTATCAGTATCATCCAAT 59.488 37.037 0.00 0.00 0.00 3.16
4105 4281 8.153550 GGACTCAACTATCAGTATCATCCAATT 58.846 37.037 0.00 0.00 0.00 2.32
4106 4282 9.202273 GACTCAACTATCAGTATCATCCAATTC 57.798 37.037 0.00 0.00 0.00 2.17
4107 4283 8.708378 ACTCAACTATCAGTATCATCCAATTCA 58.292 33.333 0.00 0.00 0.00 2.57
4108 4284 9.722184 CTCAACTATCAGTATCATCCAATTCAT 57.278 33.333 0.00 0.00 0.00 2.57
4155 4331 8.879427 ACCAAAGCTATAAACTGGAAAATACT 57.121 30.769 0.00 0.00 0.00 2.12
4159 4335 9.740710 AAAGCTATAAACTGGAAAATACTGTCT 57.259 29.630 0.00 0.00 0.00 3.41
4382 4559 2.037772 ACACTTGTGACTGGATGGAGTC 59.962 50.000 7.83 0.00 42.46 3.36
4390 4567 5.089970 TGACTGGATGGAGTCACATTTAG 57.910 43.478 0.00 0.00 45.96 1.85
4414 4591 5.380043 GGCCTCTTTGATTATCAGGATTCA 58.620 41.667 0.00 0.00 0.00 2.57
4442 4619 6.687653 TTGCAATAATTGAACGAATGTGTG 57.312 33.333 0.00 0.00 0.00 3.82
4454 4631 4.191544 ACGAATGTGTGCTATTGCTATGT 58.808 39.130 0.00 0.00 40.48 2.29
4473 4650 5.894298 ATGTATGGAGTCCTGCAAGATTA 57.106 39.130 11.33 0.00 34.07 1.75
4513 4699 9.790344 ATATGAGATATTTCCAAGAGGTTTGAG 57.210 33.333 0.00 0.00 35.89 3.02
4524 4710 7.974504 TCCAAGAGGTTTGAGTTACTAGAAAT 58.025 34.615 0.00 0.00 35.89 2.17
4599 4819 9.353999 GGATACAATCTTACAAATCAAACAACC 57.646 33.333 0.00 0.00 0.00 3.77
4603 4823 8.908903 ACAATCTTACAAATCAAACAACCTACA 58.091 29.630 0.00 0.00 0.00 2.74
4604 4824 9.912634 CAATCTTACAAATCAAACAACCTACAT 57.087 29.630 0.00 0.00 0.00 2.29
4623 4843 8.706521 ACCTACATAGGAAAACTTCTAAGGATC 58.293 37.037 12.05 0.00 46.63 3.36
4645 4865 5.865085 TCCCTATCCTCCAAAATTCGTATG 58.135 41.667 0.00 0.00 0.00 2.39
4734 4954 5.232463 GTCCAGTGCAAACATCATTCATTT 58.768 37.500 0.00 0.00 0.00 2.32
5023 5247 9.209175 GTGAAACACTGAACAAGATTACTAGAT 57.791 33.333 0.00 0.00 36.32 1.98
5062 5286 2.169832 TTCTTCAGGTCAAAGGCTCG 57.830 50.000 0.00 0.00 0.00 5.03
5080 5304 1.626654 CGGAGGCTGCAACAACTACG 61.627 60.000 6.86 0.00 0.00 3.51
5185 5409 5.746245 CGAGTTTGTTGATTTGGTAAAAGCA 59.254 36.000 0.00 0.00 39.81 3.91
5234 5458 6.867662 ACTGATTGTACTTTTCAGAACCAG 57.132 37.500 20.03 4.14 39.36 4.00
5268 5492 2.897969 TCTTCAAGAGACCGGCTTAACT 59.102 45.455 0.00 0.00 0.00 2.24
5297 5521 7.660617 TCCAACCGCGGTTCAAATATATTATTA 59.339 33.333 39.38 8.84 36.00 0.98
5363 5587 8.533569 TTCCCTGGAAAATACCTATCATTTTC 57.466 34.615 10.60 10.60 45.41 2.29
5478 5710 6.362016 TCACATGTGAAAATTGATTTACGTGC 59.638 34.615 26.02 0.00 36.53 5.34
5515 5747 3.331150 ACCAAATTATCACTTCGCGTCA 58.669 40.909 5.77 0.00 0.00 4.35
5591 5823 4.209911 GGAAAGTTGCAAGTTCATTTCTGC 59.790 41.667 19.51 5.06 0.00 4.26
5626 5858 7.676004 TGAATAGACCACTTGAACATGAAGTA 58.324 34.615 0.00 0.00 32.27 2.24
5899 6131 0.957395 AAGGCACAGCAATCAGACCG 60.957 55.000 0.00 0.00 0.00 4.79
6013 6245 5.339008 TTCTAGGTACTAAGTGCATGTGG 57.661 43.478 0.00 0.00 42.17 4.17
6035 6267 5.415701 TGGTCTTAAGGTTCATCAATTGAGC 59.584 40.000 14.54 0.01 35.27 4.26
6036 6268 5.415701 GGTCTTAAGGTTCATCAATTGAGCA 59.584 40.000 14.54 0.00 37.30 4.26
6071 6303 2.507058 TGCTGCCCTTGATCTTACATCT 59.493 45.455 0.00 0.00 0.00 2.90
6148 6380 6.959639 TGTCTTTTTGGCTTGTTAGAGAAT 57.040 33.333 0.00 0.00 0.00 2.40
6176 6408 1.801178 GTACAGAGTTGGTGAAGCAGC 59.199 52.381 0.00 0.00 0.00 5.25
6245 6477 1.821136 CCAAGGCCTTGATTGACCTTC 59.179 52.381 41.10 0.00 40.54 3.46
6248 6480 1.988107 AGGCCTTGATTGACCTTCTGA 59.012 47.619 0.00 0.00 0.00 3.27
6346 6578 1.134848 GCTCCTGTGGACATCTCTGAC 60.135 57.143 0.00 0.00 0.00 3.51
6355 6587 4.629200 GTGGACATCTCTGACTTGAATGAC 59.371 45.833 0.00 0.00 0.00 3.06
6373 6605 3.517602 TGACGATGATCTAAACGTTGGG 58.482 45.455 0.00 0.00 39.04 4.12
6998 7233 1.208614 GGAAACAGCAGAGCAAGCG 59.791 57.895 0.00 0.00 37.01 4.68
7036 7271 1.421646 CCTTTCCAGTTCACCAGGTCT 59.578 52.381 0.00 0.00 0.00 3.85
7038 7273 1.801242 TTCCAGTTCACCAGGTCTGA 58.199 50.000 8.14 0.00 0.00 3.27
7067 7302 6.156775 TCAATTATGACATCAGTGAGGAAGGA 59.843 38.462 12.53 0.00 0.00 3.36
7129 7364 4.021016 TCTCTAAACCCTCACTTGCTTCTC 60.021 45.833 0.00 0.00 0.00 2.87
7135 7370 4.837972 ACCCTCACTTGCTTCTCTAATTC 58.162 43.478 0.00 0.00 0.00 2.17
7140 7375 7.099764 CCTCACTTGCTTCTCTAATTCTGTTA 58.900 38.462 0.00 0.00 0.00 2.41
7142 7377 7.441836 TCACTTGCTTCTCTAATTCTGTTACA 58.558 34.615 0.00 0.00 0.00 2.41
7159 7394 4.202000 TGTTACAACTTTGTGATGCACTGG 60.202 41.667 4.82 0.00 42.31 4.00
7162 7397 2.620115 CAACTTTGTGATGCACTGGACT 59.380 45.455 0.00 0.00 35.11 3.85
7196 7431 2.161012 CACCTGTTGTCTCATGCACATC 59.839 50.000 0.00 0.00 0.00 3.06
7234 7469 8.712228 ATGGGAATAAAATCTATCAAGGGTTC 57.288 34.615 0.00 0.00 0.00 3.62
7235 7470 7.882755 TGGGAATAAAATCTATCAAGGGTTCT 58.117 34.615 0.00 0.00 0.00 3.01
7265 7500 2.753452 AGCTGACATCAAATGCTTGGAG 59.247 45.455 0.00 0.00 33.01 3.86
7321 7556 1.536766 GCGCCTATGAAAGCATATGCA 59.463 47.619 28.62 9.21 44.14 3.96
7397 7632 2.942752 GCCATCAAGTGCATGAGAGGAA 60.943 50.000 13.11 0.00 32.86 3.36
7483 7718 2.355108 GGCATCAAGGCTCAAGTCACTA 60.355 50.000 0.00 0.00 40.24 2.74
7489 7724 4.528206 TCAAGGCTCAAGTCACTAGATGAA 59.472 41.667 0.00 0.00 39.72 2.57
7498 7733 2.698797 GTCACTAGATGAATCCCCGGAA 59.301 50.000 0.73 0.00 39.72 4.30
7501 7736 3.006323 CACTAGATGAATCCCCGGAAGAG 59.994 52.174 0.73 0.00 0.00 2.85
7525 7760 0.955428 TGCCACAAGATCAAGCCGAC 60.955 55.000 0.00 0.00 0.00 4.79
7535 7770 0.176910 TCAAGCCGACGCCATATTCA 59.823 50.000 0.00 0.00 34.57 2.57
7557 7792 2.183478 ATGTCCAACAACTCGCATCA 57.817 45.000 0.00 0.00 0.00 3.07
7558 7793 2.183478 TGTCCAACAACTCGCATCAT 57.817 45.000 0.00 0.00 0.00 2.45
7584 7819 4.515191 ACGCAGTAACAGATGTTCACATTT 59.485 37.500 0.59 0.00 41.94 2.32
7599 7834 9.788475 ATGTTCACATTTCTGACGATTTGCGTT 62.788 37.037 0.00 0.00 43.46 4.84
7655 7890 2.697147 ATTGGCTGGTGGCGTCAAGT 62.697 55.000 0.00 0.00 42.94 3.16
7771 8006 2.095461 TCTAGCGATGACAGTGAAGCT 58.905 47.619 0.00 2.63 38.57 3.74
7819 8054 3.625632 ATCGGTGAGCCAGGTCCCT 62.626 63.158 0.00 0.00 34.09 4.20
7832 8067 4.980592 TCCCTGCCACTCCCAGCA 62.981 66.667 0.00 0.00 37.46 4.41
7835 8070 2.672908 CTGCCACTCCCAGCATGA 59.327 61.111 0.00 0.00 39.69 3.07
7892 8127 2.149578 CCCTGAGCAAGTTCAAGTCTG 58.850 52.381 0.00 0.00 0.00 3.51
7893 8128 2.224378 CCCTGAGCAAGTTCAAGTCTGA 60.224 50.000 0.00 0.00 0.00 3.27
7993 8228 1.113517 ATGATTCCGACGACCCCGAT 61.114 55.000 0.00 0.00 39.50 4.18
8129 8365 6.500684 TTCTTTTGAACCAGTAGATCATGC 57.499 37.500 0.00 0.00 32.77 4.06
8133 8369 6.839124 TTTGAACCAGTAGATCATGCATTT 57.161 33.333 0.00 0.00 0.00 2.32
8177 8413 4.820716 AGCTGGACAGATTATGCTTTGATC 59.179 41.667 3.00 0.00 0.00 2.92
8189 8425 1.511958 GCTTTGATCGACGTACGTAGC 59.488 52.381 22.87 20.02 43.13 3.58
8355 8594 7.218228 TGACACGAACTACTCAACCTTATAA 57.782 36.000 0.00 0.00 0.00 0.98
8361 8600 9.530633 ACGAACTACTCAACCTTATAATCATTC 57.469 33.333 0.00 0.00 0.00 2.67
8380 8619 7.481275 TCATTCAGAAATTTCAACCAAAAGC 57.519 32.000 19.99 0.00 0.00 3.51
8428 8667 3.091633 AGGCCATAAACATGTCAGCTT 57.908 42.857 5.01 0.00 0.00 3.74
8434 8673 5.336372 GCCATAAACATGTCAGCTTTTACCA 60.336 40.000 0.00 0.00 0.00 3.25
8437 8676 5.789643 AAACATGTCAGCTTTTACCACAT 57.210 34.783 0.00 0.00 0.00 3.21
8440 8679 7.466746 AACATGTCAGCTTTTACCACATTAT 57.533 32.000 0.00 0.00 0.00 1.28
8449 8688 5.288472 GCTTTTACCACATTATTTGCTTCCG 59.712 40.000 0.00 0.00 0.00 4.30
8504 8743 1.293924 CACGCCTCCAAATGCTCTAG 58.706 55.000 0.00 0.00 0.00 2.43
8553 9464 7.400599 AATGTGCATCAAAGTTGATCTATGT 57.599 32.000 3.51 0.00 45.62 2.29
8562 9473 8.786826 TCAAAGTTGATCTATGTAATTTCGGT 57.213 30.769 0.00 0.00 31.01 4.69
8572 9483 4.261578 TGTAATTTCGGTTCCGAACTCT 57.738 40.909 23.44 14.09 46.12 3.24
8573 9484 4.240096 TGTAATTTCGGTTCCGAACTCTC 58.760 43.478 23.44 15.28 46.12 3.20
8574 9485 3.396260 AATTTCGGTTCCGAACTCTCA 57.604 42.857 23.44 11.17 46.12 3.27
8575 9486 2.894763 TTTCGGTTCCGAACTCTCAA 57.105 45.000 23.44 7.77 46.12 3.02
8576 9487 2.894763 TTCGGTTCCGAACTCTCAAA 57.105 45.000 20.52 0.00 42.44 2.69
8577 9488 2.894763 TCGGTTCCGAACTCTCAAAA 57.105 45.000 11.66 0.00 35.41 2.44
8578 9489 3.182341 TCGGTTCCGAACTCTCAAAAA 57.818 42.857 11.66 0.00 35.41 1.94
8579 9490 2.867975 TCGGTTCCGAACTCTCAAAAAC 59.132 45.455 11.66 0.00 35.41 2.43
8580 9491 2.032290 CGGTTCCGAACTCTCAAAAACC 60.032 50.000 11.03 0.00 0.00 3.27
8581 9492 2.292569 GGTTCCGAACTCTCAAAAACCC 59.707 50.000 11.03 0.00 0.00 4.11
8582 9493 2.946990 GTTCCGAACTCTCAAAAACCCA 59.053 45.455 3.88 0.00 0.00 4.51
8583 9494 2.567985 TCCGAACTCTCAAAAACCCAC 58.432 47.619 0.00 0.00 0.00 4.61
8584 9495 1.607148 CCGAACTCTCAAAAACCCACC 59.393 52.381 0.00 0.00 0.00 4.61
8585 9496 2.572290 CGAACTCTCAAAAACCCACCT 58.428 47.619 0.00 0.00 0.00 4.00
8586 9497 2.548480 CGAACTCTCAAAAACCCACCTC 59.452 50.000 0.00 0.00 0.00 3.85
8587 9498 2.658807 ACTCTCAAAAACCCACCTCC 57.341 50.000 0.00 0.00 0.00 4.30
8588 9499 1.850345 ACTCTCAAAAACCCACCTCCA 59.150 47.619 0.00 0.00 0.00 3.86
8589 9500 2.243736 ACTCTCAAAAACCCACCTCCAA 59.756 45.455 0.00 0.00 0.00 3.53
8590 9501 3.295973 CTCTCAAAAACCCACCTCCAAA 58.704 45.455 0.00 0.00 0.00 3.28
8591 9502 3.704061 CTCTCAAAAACCCACCTCCAAAA 59.296 43.478 0.00 0.00 0.00 2.44
8592 9503 4.097418 TCTCAAAAACCCACCTCCAAAAA 58.903 39.130 0.00 0.00 0.00 1.94
8593 9504 4.719273 TCTCAAAAACCCACCTCCAAAAAT 59.281 37.500 0.00 0.00 0.00 1.82
8594 9505 5.190726 TCTCAAAAACCCACCTCCAAAAATT 59.809 36.000 0.00 0.00 0.00 1.82
8595 9506 6.384305 TCTCAAAAACCCACCTCCAAAAATTA 59.616 34.615 0.00 0.00 0.00 1.40
8596 9507 6.587273 TCAAAAACCCACCTCCAAAAATTAG 58.413 36.000 0.00 0.00 0.00 1.73
8597 9508 4.617253 AAACCCACCTCCAAAAATTAGC 57.383 40.909 0.00 0.00 0.00 3.09
8598 9509 3.542969 ACCCACCTCCAAAAATTAGCT 57.457 42.857 0.00 0.00 0.00 3.32
8599 9510 3.431415 ACCCACCTCCAAAAATTAGCTC 58.569 45.455 0.00 0.00 0.00 4.09
8640 9551 2.673258 TCTGACCATCGCCAATACCTA 58.327 47.619 0.00 0.00 0.00 3.08
8654 9565 6.447162 GCCAATACCTAACTGCCAATAATTC 58.553 40.000 0.00 0.00 0.00 2.17
8673 9584 2.516906 TCCTGCATGCTCAATGACAAA 58.483 42.857 20.33 0.00 38.72 2.83
8705 9616 6.414732 CACCCTACATTTCTCAATACCTCAA 58.585 40.000 0.00 0.00 0.00 3.02
8720 9631 1.272092 CCTCAATCATGTGGTGTGGGT 60.272 52.381 0.00 0.00 35.83 4.51
8723 9634 1.745087 CAATCATGTGGTGTGGGTAGC 59.255 52.381 0.00 0.00 0.00 3.58
8724 9635 0.107703 ATCATGTGGTGTGGGTAGCG 60.108 55.000 0.00 0.00 0.00 4.26
8730 9641 3.702048 GTGTGGGTAGCGGAGGCA 61.702 66.667 0.00 0.00 43.41 4.75
8754 9665 4.992511 GGCGCGGTGTGGGTTACA 62.993 66.667 8.83 0.00 36.82 2.41
8755 9666 3.419759 GCGCGGTGTGGGTTACAG 61.420 66.667 8.83 0.00 40.69 2.74
8756 9667 2.340809 CGCGGTGTGGGTTACAGA 59.659 61.111 0.00 0.00 40.69 3.41
8757 9668 1.736645 CGCGGTGTGGGTTACAGAG 60.737 63.158 0.00 0.00 40.69 3.35
8758 9669 1.375523 GCGGTGTGGGTTACAGAGG 60.376 63.158 0.00 0.00 40.69 3.69
8759 9670 1.375523 CGGTGTGGGTTACAGAGGC 60.376 63.158 0.00 0.00 40.69 4.70
8764 9675 0.389948 GTGGGTTACAGAGGCGAGTG 60.390 60.000 0.00 0.00 0.00 3.51
8766 9677 1.448013 GGTTACAGAGGCGAGTGGC 60.448 63.158 0.00 0.00 42.51 5.01
8768 9679 0.737715 GTTACAGAGGCGAGTGGCAG 60.738 60.000 0.00 0.00 46.16 4.85
8770 9681 4.383861 CAGAGGCGAGTGGCAGCA 62.384 66.667 0.00 0.00 46.16 4.41
8772 9683 4.385405 GAGGCGAGTGGCAGCACT 62.385 66.667 0.00 0.00 46.16 4.40
8774 9685 4.996434 GGCGAGTGGCAGCACTGT 62.996 66.667 0.00 0.00 46.16 3.55
8775 9686 3.418068 GCGAGTGGCAGCACTGTC 61.418 66.667 0.00 0.00 42.87 3.51
8776 9687 2.341543 CGAGTGGCAGCACTGTCT 59.658 61.111 3.62 0.00 35.92 3.41
8777 9688 2.025969 CGAGTGGCAGCACTGTCTG 61.026 63.158 3.62 3.77 35.92 3.51
8778 9689 1.670406 GAGTGGCAGCACTGTCTGG 60.670 63.158 3.62 0.00 35.92 3.86
8779 9690 2.670934 GTGGCAGCACTGTCTGGG 60.671 66.667 3.62 0.00 35.92 4.45
8781 9692 2.670934 GGCAGCACTGTCTGGGTG 60.671 66.667 0.00 0.00 37.70 4.61
8782 9693 2.427320 GCAGCACTGTCTGGGTGA 59.573 61.111 0.00 0.00 36.89 4.02
8784 9695 2.850439 CAGCACTGTCTGGGTGATG 58.150 57.895 0.00 0.00 42.98 3.07
8785 9696 0.675837 CAGCACTGTCTGGGTGATGG 60.676 60.000 4.48 0.00 44.25 3.51
8786 9697 0.837691 AGCACTGTCTGGGTGATGGA 60.838 55.000 0.00 0.00 36.89 3.41
8787 9698 0.392193 GCACTGTCTGGGTGATGGAG 60.392 60.000 0.00 0.00 36.89 3.86
8788 9699 0.251354 CACTGTCTGGGTGATGGAGG 59.749 60.000 0.00 0.00 36.89 4.30
8789 9700 1.222936 CTGTCTGGGTGATGGAGGC 59.777 63.158 0.00 0.00 0.00 4.70
8790 9701 2.187946 GTCTGGGTGATGGAGGCG 59.812 66.667 0.00 0.00 0.00 5.52
8791 9702 2.284625 TCTGGGTGATGGAGGCGT 60.285 61.111 0.00 0.00 0.00 5.68
8792 9703 2.124983 CTGGGTGATGGAGGCGTG 60.125 66.667 0.00 0.00 0.00 5.34
8793 9704 3.687321 CTGGGTGATGGAGGCGTGG 62.687 68.421 0.00 0.00 0.00 4.94
8794 9705 3.399181 GGGTGATGGAGGCGTGGA 61.399 66.667 0.00 0.00 0.00 4.02
8795 9706 2.668632 GGTGATGGAGGCGTGGAA 59.331 61.111 0.00 0.00 0.00 3.53
8796 9707 1.450312 GGTGATGGAGGCGTGGAAG 60.450 63.158 0.00 0.00 0.00 3.46
8797 9708 2.109126 GTGATGGAGGCGTGGAAGC 61.109 63.158 0.00 0.00 0.00 3.86
8798 9709 2.892425 GATGGAGGCGTGGAAGCG 60.892 66.667 0.00 0.00 38.18 4.68
8799 9710 3.371097 GATGGAGGCGTGGAAGCGA 62.371 63.158 0.00 0.00 38.18 4.93
8800 9711 3.376935 ATGGAGGCGTGGAAGCGAG 62.377 63.158 0.00 0.00 38.18 5.03
8801 9712 4.070552 GGAGGCGTGGAAGCGAGT 62.071 66.667 0.00 0.00 38.18 4.18
8802 9713 2.811317 GAGGCGTGGAAGCGAGTG 60.811 66.667 0.00 0.00 38.18 3.51
8803 9714 4.379243 AGGCGTGGAAGCGAGTGG 62.379 66.667 0.00 0.00 38.18 4.00
8852 9774 3.833645 TCGCCGGCGAGCAGTAAT 61.834 61.111 45.37 0.00 44.01 1.89
8853 9775 3.330853 CGCCGGCGAGCAGTAATC 61.331 66.667 44.86 0.00 42.83 1.75
8854 9776 2.967615 GCCGGCGAGCAGTAATCC 60.968 66.667 12.58 0.00 0.00 3.01
8857 9779 2.240500 CGGCGAGCAGTAATCCAGC 61.241 63.158 0.00 0.00 0.00 4.85
8878 10074 4.283363 CATGAAGGTCAGGCTATGCTAT 57.717 45.455 0.00 0.00 0.00 2.97
8893 10089 3.342377 TGCTATGGAAACGTGAATGGA 57.658 42.857 0.00 0.00 0.00 3.41
8894 10090 3.270027 TGCTATGGAAACGTGAATGGAG 58.730 45.455 0.00 0.00 0.00 3.86
8918 10171 8.225603 AGTGAATAAATGTTGTCTCACAAACT 57.774 30.769 0.00 0.00 40.15 2.66
8920 10173 7.591426 GTGAATAAATGTTGTCTCACAAACTCC 59.409 37.037 0.00 0.00 40.15 3.85
8924 10177 4.060038 TGTTGTCTCACAAACTCCTCTC 57.940 45.455 0.00 0.00 40.15 3.20
8946 10205 2.973694 TACAAACCCTACGCTGGATC 57.026 50.000 0.00 0.00 0.00 3.36
8949 10208 0.460311 AAACCCTACGCTGGATCGAG 59.540 55.000 0.00 0.00 0.00 4.04
8950 10209 0.683504 AACCCTACGCTGGATCGAGT 60.684 55.000 6.60 0.00 0.00 4.18
8951 10210 1.360551 CCCTACGCTGGATCGAGTG 59.639 63.158 15.80 15.80 0.00 3.51
8990 10249 9.609950 TTTCTTTCAGAAGCAAACAAATTTTTG 57.390 25.926 1.56 1.56 38.56 2.44
8991 10250 8.321650 TCTTTCAGAAGCAAACAAATTTTTGT 57.678 26.923 2.88 2.88 41.51 2.83
8992 10251 8.442384 TCTTTCAGAAGCAAACAAATTTTTGTC 58.558 29.630 8.98 0.00 40.23 3.18
9098 10359 2.798283 CAAATGGTTGCTCAAGCTGTTG 59.202 45.455 12.24 11.48 42.66 3.33
9177 10438 5.278604 ACGGTTTTCAAGCTTGATGTAAAC 58.721 37.500 30.17 30.17 35.91 2.01
9226 10487 0.321653 AGATGACCAACGGCAACTCC 60.322 55.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.474498 GGATGCCGAGTAAATCCCGTT 60.474 52.381 0.00 0.00 34.89 4.44
38 39 5.003096 AGAATCAACCCAAGGAATTGAGT 57.997 39.130 10.27 8.20 35.89 3.41
262 263 3.245016 TGTCAATGAGCATCCTCCAAAGT 60.245 43.478 0.00 0.00 37.29 2.66
329 330 0.803768 CATCACTCCTTCACCGAGCG 60.804 60.000 0.00 0.00 0.00 5.03
346 347 0.693049 AGTTGGTTCGCTTCTCCCAT 59.307 50.000 0.00 0.00 0.00 4.00
553 554 4.883585 ACATGGCATGACAATTATTCTCGT 59.116 37.500 32.74 3.01 0.00 4.18
573 574 2.566913 TGTTACACGAGCCAAACACAT 58.433 42.857 0.00 0.00 0.00 3.21
660 661 0.867746 CACATCAACTCACCGTGGTG 59.132 55.000 12.91 12.91 46.64 4.17
661 662 0.884704 GCACATCAACTCACCGTGGT 60.885 55.000 0.00 0.00 0.00 4.16
662 663 0.603707 AGCACATCAACTCACCGTGG 60.604 55.000 0.00 0.00 0.00 4.94
663 664 1.726791 GTAGCACATCAACTCACCGTG 59.273 52.381 0.00 0.00 0.00 4.94
664 665 1.668919 CGTAGCACATCAACTCACCGT 60.669 52.381 0.00 0.00 0.00 4.83
665 666 0.992072 CGTAGCACATCAACTCACCG 59.008 55.000 0.00 0.00 0.00 4.94
666 667 2.080286 ACGTAGCACATCAACTCACC 57.920 50.000 0.00 0.00 0.00 4.02
667 668 2.592897 CGTACGTAGCACATCAACTCAC 59.407 50.000 7.22 0.00 0.00 3.51
668 669 2.858839 CGTACGTAGCACATCAACTCA 58.141 47.619 7.22 0.00 0.00 3.41
669 670 1.582502 GCGTACGTAGCACATCAACTC 59.417 52.381 17.90 0.00 34.19 3.01
670 671 1.068125 TGCGTACGTAGCACATCAACT 60.068 47.619 17.90 0.00 40.01 3.16
671 672 1.342555 TGCGTACGTAGCACATCAAC 58.657 50.000 17.90 0.00 40.01 3.18
672 673 3.796667 TGCGTACGTAGCACATCAA 57.203 47.368 17.90 0.00 40.01 2.57
687 688 2.929960 ACCGATCAATCTACGTATGCG 58.070 47.619 0.19 0.19 44.93 4.73
711 712 1.741327 GCTATGCCATTGCCACCAGG 61.741 60.000 0.00 0.00 36.33 4.45
732 740 1.466360 GGCAGTACTTTCATGCGCAAG 60.466 52.381 17.11 11.30 40.90 4.01
734 742 1.634757 CGGCAGTACTTTCATGCGCA 61.635 55.000 14.96 14.96 40.90 6.09
736 744 0.739462 TCCGGCAGTACTTTCATGCG 60.739 55.000 0.00 0.00 40.90 4.73
737 745 1.009829 CTCCGGCAGTACTTTCATGC 58.990 55.000 0.00 0.00 39.25 4.06
738 746 1.009829 GCTCCGGCAGTACTTTCATG 58.990 55.000 0.00 0.00 38.54 3.07
813 821 9.965902 AGCTCTAAAAAGGAAGAGAAATTATGA 57.034 29.630 3.60 0.00 41.51 2.15
816 824 9.965902 ATCAGCTCTAAAAAGGAAGAGAAATTA 57.034 29.630 3.60 0.00 41.51 1.40
824 832 4.142293 GCCCAATCAGCTCTAAAAAGGAAG 60.142 45.833 0.00 0.00 0.00 3.46
825 833 3.763897 GCCCAATCAGCTCTAAAAAGGAA 59.236 43.478 0.00 0.00 0.00 3.36
827 835 2.428530 GGCCCAATCAGCTCTAAAAAGG 59.571 50.000 0.00 0.00 0.00 3.11
828 836 3.359950 AGGCCCAATCAGCTCTAAAAAG 58.640 45.455 0.00 0.00 0.00 2.27
922 934 2.105134 TCGTGGGCTGTTCTAAAAAGGA 59.895 45.455 0.00 0.00 0.00 3.36
944 956 2.157668 CCTGTTTTTCGTGTGGAGATCG 59.842 50.000 0.00 0.00 0.00 3.69
953 965 3.691049 TTGAGCTTCCTGTTTTTCGTG 57.309 42.857 0.00 0.00 0.00 4.35
957 969 4.625311 CGTGTTTTTGAGCTTCCTGTTTTT 59.375 37.500 0.00 0.00 0.00 1.94
963 975 0.307760 CGCGTGTTTTTGAGCTTCCT 59.692 50.000 0.00 0.00 0.00 3.36
977 989 4.200283 GAGGGGAGAGAGCGCGTG 62.200 72.222 8.43 0.00 0.00 5.34
980 992 3.223589 GAGGAGGGGAGAGAGCGC 61.224 72.222 0.00 0.00 0.00 5.92
984 996 3.430497 CGGGGAGGAGGGGAGAGA 61.430 72.222 0.00 0.00 0.00 3.10
1057 1089 2.774351 GAGGGGAGGGTGGGGATG 60.774 72.222 0.00 0.00 0.00 3.51
1401 1433 2.348888 GGAGGCGACGAGGAGGAAA 61.349 63.158 0.00 0.00 0.00 3.13
1514 1549 1.469703 TCACGCATCTGGAGCAAAATG 59.530 47.619 0.00 0.00 0.00 2.32
1516 1551 1.825090 ATCACGCATCTGGAGCAAAA 58.175 45.000 0.00 0.00 0.00 2.44
1517 1552 1.825090 AATCACGCATCTGGAGCAAA 58.175 45.000 0.00 0.00 0.00 3.68
1518 1553 1.739466 GAAATCACGCATCTGGAGCAA 59.261 47.619 0.00 0.00 0.00 3.91
1519 1554 1.372582 GAAATCACGCATCTGGAGCA 58.627 50.000 0.00 0.00 0.00 4.26
1520 1555 0.302890 CGAAATCACGCATCTGGAGC 59.697 55.000 0.00 0.00 0.00 4.70
1521 1556 1.645034 ACGAAATCACGCATCTGGAG 58.355 50.000 0.00 0.00 36.70 3.86
1523 1558 2.900122 AAACGAAATCACGCATCTGG 57.100 45.000 0.00 0.00 36.70 3.86
1558 1606 5.534207 AGCTCCTCAAATACTCTGATGAG 57.466 43.478 0.00 0.00 45.43 2.90
1563 1611 9.606631 AAGTATAAAAGCTCCTCAAATACTCTG 57.393 33.333 0.00 0.00 30.48 3.35
1582 1630 5.759273 ACCACGTTTACAACAGCAAGTATAA 59.241 36.000 0.00 0.00 0.00 0.98
1587 1635 3.414549 AACCACGTTTACAACAGCAAG 57.585 42.857 0.00 0.00 0.00 4.01
1662 1710 9.462606 AGGTTTTATACTGGAACTAAATTGAGG 57.537 33.333 0.00 0.00 0.00 3.86
1730 1778 4.887071 TCAATTCACTGTAACCAAAGCTGT 59.113 37.500 0.00 0.00 0.00 4.40
1789 1837 8.784043 ACTAAGAATTGCTCAAATTACGTTCTT 58.216 29.630 0.00 9.90 38.64 2.52
1800 1848 6.650807 CACTACCTGAACTAAGAATTGCTCAA 59.349 38.462 0.00 0.00 0.00 3.02
1906 1954 0.463204 CATCACTCACCTCGGCATCT 59.537 55.000 0.00 0.00 0.00 2.90
2263 2311 0.107703 TATGCTGCCTTCCGAACTGG 60.108 55.000 0.00 0.00 40.09 4.00
2348 2396 2.137523 GCATTGGTCAACTGGCTTTTG 58.862 47.619 0.00 0.00 0.00 2.44
2371 2419 2.159254 ACCGGTTGTGCATTTCATATGC 60.159 45.455 0.00 2.90 44.76 3.14
2683 2731 1.600957 CCAGCATCCTCAGTATTTGCG 59.399 52.381 0.00 0.00 38.32 4.85
2692 2740 4.019411 TGTTCAGATTTACCAGCATCCTCA 60.019 41.667 0.00 0.00 0.00 3.86
2743 2791 9.053840 AGCATGATCATATTAAACTTCACAGAG 57.946 33.333 8.15 0.00 0.00 3.35
2900 2948 7.973944 TGATAATTATATGCACGCTGTACTAGG 59.026 37.037 0.00 0.00 0.00 3.02
3231 3280 3.071023 TGATGGAAAGGGCTAGGTAATCG 59.929 47.826 0.00 0.00 0.00 3.34
3255 3305 1.267806 CAGCGCAACCAAAAGTCTGAT 59.732 47.619 11.47 0.00 0.00 2.90
3273 3323 1.747709 AAGCTTCATGCACTAGCCAG 58.252 50.000 11.63 0.00 45.94 4.85
3325 3375 5.295045 GGATAAATTGCAAAAGCCAGGATTG 59.705 40.000 1.71 0.00 0.00 2.67
3327 3377 4.470664 TGGATAAATTGCAAAAGCCAGGAT 59.529 37.500 1.71 0.00 0.00 3.24
3338 3388 3.660970 TGGCTAGGTGGATAAATTGCA 57.339 42.857 0.00 0.00 0.00 4.08
3358 3532 4.218417 CCAAAAGTCCGAACTGATGGAAAT 59.782 41.667 0.36 0.00 41.39 2.17
3495 3669 1.548809 AGGACTGAGAGTGCTACTGCA 60.549 52.381 0.00 0.00 45.38 4.41
3593 3767 4.220163 ACGCCCTAAGGTAGATAAGTATGC 59.780 45.833 0.00 0.00 34.57 3.14
3601 3775 2.093128 CCAAACACGCCCTAAGGTAGAT 60.093 50.000 0.00 0.00 34.57 1.98
3768 3943 1.485895 AGTGCCACAAGTTTGCCAAAT 59.514 42.857 0.00 0.00 0.00 2.32
3769 3944 0.901124 AGTGCCACAAGTTTGCCAAA 59.099 45.000 0.00 0.00 0.00 3.28
3801 3976 6.593382 GGCATGTTTGGTTGCTTTTCATATTA 59.407 34.615 0.00 0.00 38.88 0.98
3863 4038 1.126113 CTACAGTAAGTTTGGCACGCG 59.874 52.381 3.53 3.53 0.00 6.01
4001 4177 7.252708 TGCAATGATACAAAGCAATGACTTAG 58.747 34.615 0.00 0.00 31.42 2.18
4014 4190 7.122501 ACACCACTGATATTTGCAATGATACAA 59.877 33.333 0.00 0.00 0.00 2.41
4079 4255 6.656632 TGGATGATACTGATAGTTGAGTCC 57.343 41.667 0.00 0.00 0.00 3.85
4097 4273 6.981559 TGCAATCACAATGTATGAATTGGATG 59.018 34.615 10.06 0.00 41.06 3.51
4098 4274 6.982141 GTGCAATCACAATGTATGAATTGGAT 59.018 34.615 0.00 4.69 41.06 3.41
4099 4275 6.331845 GTGCAATCACAATGTATGAATTGGA 58.668 36.000 0.00 6.26 41.06 3.53
4100 4276 5.521010 GGTGCAATCACAATGTATGAATTGG 59.479 40.000 0.00 0.00 44.87 3.16
4101 4277 6.100668 TGGTGCAATCACAATGTATGAATTG 58.899 36.000 0.00 0.00 44.87 2.32
4102 4278 6.283544 TGGTGCAATCACAATGTATGAATT 57.716 33.333 0.00 0.00 44.87 2.17
4103 4279 5.918426 TGGTGCAATCACAATGTATGAAT 57.082 34.783 0.00 0.00 44.87 2.57
4104 4280 5.718724 TTGGTGCAATCACAATGTATGAA 57.281 34.783 0.00 0.00 44.87 2.57
4105 4281 5.718724 TTTGGTGCAATCACAATGTATGA 57.281 34.783 0.00 0.00 44.87 2.15
4106 4282 6.035220 GTCATTTGGTGCAATCACAATGTATG 59.965 38.462 16.21 9.76 44.87 2.39
4107 4283 6.101332 GTCATTTGGTGCAATCACAATGTAT 58.899 36.000 16.21 1.84 44.87 2.29
4108 4284 5.468592 GTCATTTGGTGCAATCACAATGTA 58.531 37.500 16.21 8.35 44.87 2.29
4109 4285 4.309099 GTCATTTGGTGCAATCACAATGT 58.691 39.130 16.21 0.00 44.87 2.71
4110 4286 3.680937 GGTCATTTGGTGCAATCACAATG 59.319 43.478 0.00 4.35 44.87 2.82
4111 4287 3.324268 TGGTCATTTGGTGCAATCACAAT 59.676 39.130 0.00 0.00 44.87 2.71
4112 4288 2.697229 TGGTCATTTGGTGCAATCACAA 59.303 40.909 0.00 0.00 44.87 3.33
4155 4331 8.459911 TCAAACTATCATCCTCGTATTAGACA 57.540 34.615 0.00 0.00 0.00 3.41
4159 4335 6.493802 AGGCTCAAACTATCATCCTCGTATTA 59.506 38.462 0.00 0.00 0.00 0.98
4217 4393 5.843421 AGATCACCAAGCTGGAATACTATCT 59.157 40.000 8.91 0.00 40.96 1.98
4316 4492 7.458397 CCAACACATGGTTATACTATACCCAT 58.542 38.462 0.00 0.27 44.85 4.00
4332 4508 5.618236 ACATAGATCCATCTCCAACACATG 58.382 41.667 0.00 0.00 38.32 3.21
4382 4559 6.547141 TGATAATCAAAGAGGCCCTAAATGTG 59.453 38.462 0.00 0.00 0.00 3.21
4387 4564 4.975147 TCCTGATAATCAAAGAGGCCCTAA 59.025 41.667 0.00 0.00 0.00 2.69
4390 4567 3.864789 TCCTGATAATCAAAGAGGCCC 57.135 47.619 0.00 0.00 0.00 5.80
4414 4591 8.649841 CACATTCGTTCAATTATTGCAATTCTT 58.350 29.630 18.75 8.70 0.00 2.52
4442 4619 5.174395 CAGGACTCCATACATAGCAATAGC 58.826 45.833 0.00 0.00 42.56 2.97
4481 4658 6.840527 TCTTGGAAATATCTCATATGGTGCA 58.159 36.000 2.13 0.00 0.00 4.57
4482 4659 6.373774 CCTCTTGGAAATATCTCATATGGTGC 59.626 42.308 2.13 0.00 34.57 5.01
4483 4660 7.456725 ACCTCTTGGAAATATCTCATATGGTG 58.543 38.462 2.13 0.00 37.04 4.17
4484 4661 7.639062 ACCTCTTGGAAATATCTCATATGGT 57.361 36.000 2.13 0.00 37.04 3.55
4486 4663 9.565090 TCAAACCTCTTGGAAATATCTCATATG 57.435 33.333 0.00 0.00 37.04 1.78
4487 4664 9.790344 CTCAAACCTCTTGGAAATATCTCATAT 57.210 33.333 0.00 0.00 37.04 1.78
4488 4665 8.772250 ACTCAAACCTCTTGGAAATATCTCATA 58.228 33.333 0.00 0.00 37.04 2.15
4493 4679 8.794335 AGTAACTCAAACCTCTTGGAAATATC 57.206 34.615 0.00 0.00 37.04 1.63
4524 4710 4.618927 GCTGCACTGCATTTCATAGGAAAA 60.619 41.667 6.65 0.00 45.52 2.29
4537 4723 1.541379 AATGATTCTGCTGCACTGCA 58.459 45.000 3.11 3.11 41.05 4.41
4541 4727 4.970662 TTTCCTAATGATTCTGCTGCAC 57.029 40.909 0.00 0.00 0.00 4.57
4573 4793 9.353999 GGTTGTTTGATTTGTAAGATTGTATCC 57.646 33.333 0.00 0.00 0.00 2.59
4577 4797 8.908903 TGTAGGTTGTTTGATTTGTAAGATTGT 58.091 29.630 0.00 0.00 0.00 2.71
4578 4798 9.912634 ATGTAGGTTGTTTGATTTGTAAGATTG 57.087 29.630 0.00 0.00 0.00 2.67
4581 4801 9.226606 CCTATGTAGGTTGTTTGATTTGTAAGA 57.773 33.333 0.00 0.00 38.69 2.10
4582 4802 9.226606 TCCTATGTAGGTTGTTTGATTTGTAAG 57.773 33.333 6.01 0.00 44.02 2.34
4583 4803 9.575868 TTCCTATGTAGGTTGTTTGATTTGTAA 57.424 29.630 6.01 0.00 44.02 2.41
4584 4804 9.575868 TTTCCTATGTAGGTTGTTTGATTTGTA 57.424 29.630 6.01 0.00 44.02 2.41
4585 4805 8.472007 TTTCCTATGTAGGTTGTTTGATTTGT 57.528 30.769 6.01 0.00 44.02 2.83
4586 4806 9.191995 GTTTTCCTATGTAGGTTGTTTGATTTG 57.808 33.333 6.01 0.00 44.02 2.32
4587 4807 9.143155 AGTTTTCCTATGTAGGTTGTTTGATTT 57.857 29.630 6.01 0.00 44.02 2.17
4588 4808 8.706322 AGTTTTCCTATGTAGGTTGTTTGATT 57.294 30.769 6.01 0.00 44.02 2.57
4589 4809 8.706322 AAGTTTTCCTATGTAGGTTGTTTGAT 57.294 30.769 6.01 0.00 44.02 2.57
4590 4810 7.996644 AGAAGTTTTCCTATGTAGGTTGTTTGA 59.003 33.333 6.01 0.00 44.02 2.69
4591 4811 8.166422 AGAAGTTTTCCTATGTAGGTTGTTTG 57.834 34.615 6.01 0.00 44.02 2.93
4592 4812 9.856162 TTAGAAGTTTTCCTATGTAGGTTGTTT 57.144 29.630 6.01 0.00 44.02 2.83
4593 4813 9.503399 CTTAGAAGTTTTCCTATGTAGGTTGTT 57.497 33.333 6.01 0.00 44.02 2.83
4594 4814 8.101419 CCTTAGAAGTTTTCCTATGTAGGTTGT 58.899 37.037 6.01 0.00 44.02 3.32
4595 4815 8.319146 TCCTTAGAAGTTTTCCTATGTAGGTTG 58.681 37.037 6.01 0.00 44.02 3.77
4596 4816 8.445361 TCCTTAGAAGTTTTCCTATGTAGGTT 57.555 34.615 6.01 0.00 44.02 3.50
4597 4817 8.625467 ATCCTTAGAAGTTTTCCTATGTAGGT 57.375 34.615 6.01 0.00 44.02 3.08
4598 4818 8.151596 GGATCCTTAGAAGTTTTCCTATGTAGG 58.848 40.741 3.84 0.00 45.02 3.18
4599 4819 8.151596 GGGATCCTTAGAAGTTTTCCTATGTAG 58.848 40.741 12.58 0.00 0.00 2.74
4600 4820 7.849904 AGGGATCCTTAGAAGTTTTCCTATGTA 59.150 37.037 12.58 0.00 0.00 2.29
4601 4821 6.678857 AGGGATCCTTAGAAGTTTTCCTATGT 59.321 38.462 12.58 0.00 0.00 2.29
4602 4822 7.142995 AGGGATCCTTAGAAGTTTTCCTATG 57.857 40.000 12.58 0.00 0.00 2.23
4603 4823 9.106977 GATAGGGATCCTTAGAAGTTTTCCTAT 57.893 37.037 12.58 4.97 34.61 2.57
4604 4824 8.493787 GATAGGGATCCTTAGAAGTTTTCCTA 57.506 38.462 12.58 0.00 34.61 2.94
4623 4843 5.865085 TCATACGAATTTTGGAGGATAGGG 58.135 41.667 0.00 0.00 0.00 3.53
4645 4865 8.037166 AGTGCCTATTTGATTCAAAGGAAATTC 58.963 33.333 17.63 6.92 36.76 2.17
4887 5107 6.070653 TGCTGAATTCAGGCATTCCTTTAAAT 60.071 34.615 31.41 0.00 41.93 1.40
4888 5108 5.245751 TGCTGAATTCAGGCATTCCTTTAAA 59.754 36.000 31.41 6.42 41.93 1.52
4889 5109 4.771577 TGCTGAATTCAGGCATTCCTTTAA 59.228 37.500 31.41 7.01 41.93 1.52
4890 5110 4.343231 TGCTGAATTCAGGCATTCCTTTA 58.657 39.130 31.41 7.59 41.93 1.85
4891 5111 3.167485 TGCTGAATTCAGGCATTCCTTT 58.833 40.909 31.41 0.00 41.93 3.11
4892 5112 2.811410 TGCTGAATTCAGGCATTCCTT 58.189 42.857 31.41 0.00 41.93 3.36
4893 5113 2.519771 TGCTGAATTCAGGCATTCCT 57.480 45.000 31.41 0.00 45.66 3.36
4894 5114 3.518590 CTTTGCTGAATTCAGGCATTCC 58.481 45.455 31.41 16.97 43.94 3.01
4895 5115 3.518590 CCTTTGCTGAATTCAGGCATTC 58.481 45.455 31.41 17.60 43.94 2.67
4896 5116 2.235402 CCCTTTGCTGAATTCAGGCATT 59.765 45.455 31.41 0.00 43.94 3.56
4897 5117 1.829222 CCCTTTGCTGAATTCAGGCAT 59.171 47.619 31.41 0.00 43.94 4.40
4898 5118 1.259609 CCCTTTGCTGAATTCAGGCA 58.740 50.000 31.41 25.86 43.94 4.75
4899 5119 1.203287 GACCCTTTGCTGAATTCAGGC 59.797 52.381 31.41 23.98 43.94 4.85
4991 5215 4.879545 TCTTGTTCAGTGTTTCACTAACCC 59.120 41.667 2.03 0.00 43.43 4.11
5062 5286 1.298859 CCGTAGTTGTTGCAGCCTCC 61.299 60.000 0.00 0.00 0.00 4.30
5161 5385 5.746245 TGCTTTTACCAAATCAACAAACTCG 59.254 36.000 0.00 0.00 0.00 4.18
5234 5458 5.350091 GTCTCTTGAAGATTCACTAACTGGC 59.650 44.000 0.00 0.00 36.83 4.85
5268 5492 2.888464 TTTGAACCGCGGTTGGACCA 62.888 55.000 45.58 32.87 38.47 4.02
5321 5545 6.669154 TCCAGGGAATAGCTTGAAAAATGATT 59.331 34.615 0.00 0.00 0.00 2.57
5326 5550 6.739331 TTTTCCAGGGAATAGCTTGAAAAA 57.261 33.333 0.83 0.00 33.79 1.94
5363 5587 0.890996 GGACTGGCAGTTCAACTGGG 60.891 60.000 22.98 0.00 46.01 4.45
5478 5710 9.971922 GATAATTTGGTCCTGAAATGGAATAAG 57.028 33.333 0.00 0.00 37.93 1.73
5591 5823 5.021033 AGTGGTCTATTCAGAAGCTCATG 57.979 43.478 0.00 0.00 30.85 3.07
5626 5858 4.701765 CGATCTGGTTTCCATCTTCATCT 58.298 43.478 0.00 0.00 30.82 2.90
5941 6173 2.368875 CCTAGGGGACTGCATAACGATT 59.631 50.000 0.00 0.00 43.88 3.34
5944 6176 1.120530 ACCTAGGGGACTGCATAACG 58.879 55.000 14.81 0.00 43.88 3.18
5981 6213 6.091441 CACTTAGTACCTAGAAAAGCTGCAAG 59.909 42.308 1.02 0.00 0.00 4.01
6013 6245 6.500684 TGCTCAATTGATGAACCTTAAGAC 57.499 37.500 8.96 0.00 37.67 3.01
6035 6267 3.524541 GGCAGCAAATTTAGAACCCATG 58.475 45.455 0.00 0.00 0.00 3.66
6036 6268 2.501316 GGGCAGCAAATTTAGAACCCAT 59.499 45.455 11.67 0.00 36.07 4.00
6071 6303 0.822811 TGTTTCTGCTTTGCCTGCAA 59.177 45.000 0.00 0.00 40.13 4.08
6148 6380 5.617528 TCACCAACTCTGTACTTGGTTTA 57.382 39.130 13.13 4.19 46.67 2.01
6176 6408 5.217393 CCCATTGATGAATGATAAACGCAG 58.783 41.667 6.45 0.00 41.49 5.18
6245 6477 0.250858 TGTGGACCATGCCAAGTCAG 60.251 55.000 0.00 0.00 40.20 3.51
6248 6480 0.478072 TCTTGTGGACCATGCCAAGT 59.522 50.000 18.09 0.00 40.20 3.16
6346 6578 6.575083 ACGTTTAGATCATCGTCATTCAAG 57.425 37.500 0.00 0.00 30.71 3.02
6355 6587 2.901249 ACCCCAACGTTTAGATCATCG 58.099 47.619 0.00 0.00 0.00 3.84
6373 6605 8.794335 ATCCAGAAAACAGAATACTAAGAACC 57.206 34.615 0.00 0.00 0.00 3.62
6577 6809 6.296803 AGTAATTGACCTTCCGAGTTCTTTT 58.703 36.000 0.00 0.00 0.00 2.27
6785 7019 9.274206 AGGAAAGATTGTCAGTACTTTTAGTTC 57.726 33.333 0.00 0.00 33.61 3.01
6998 7233 3.618690 AGGCTTTCAGGACTCATACAC 57.381 47.619 0.00 0.00 0.00 2.90
7067 7302 1.340017 ACTGCAATACGGATGGCAAGT 60.340 47.619 11.76 8.58 41.66 3.16
7129 7364 8.075574 TGCATCACAAAGTTGTAACAGAATTAG 58.924 33.333 0.00 0.00 39.91 1.73
7135 7370 4.971830 CAGTGCATCACAAAGTTGTAACAG 59.028 41.667 0.00 0.00 39.91 3.16
7140 7375 2.358898 GTCCAGTGCATCACAAAGTTGT 59.641 45.455 0.00 0.00 43.36 3.32
7142 7377 2.936202 AGTCCAGTGCATCACAAAGTT 58.064 42.857 0.00 0.00 36.74 2.66
7159 7394 6.375455 ACAACAGGTGAAATGGATGATTAGTC 59.625 38.462 0.00 0.00 0.00 2.59
7162 7397 6.484288 AGACAACAGGTGAAATGGATGATTA 58.516 36.000 0.00 0.00 0.00 1.75
7196 7431 5.766150 TTATTCCCATAGAATTTGGTGCG 57.234 39.130 0.00 0.00 42.86 5.34
7209 7444 8.514504 AGAACCCTTGATAGATTTTATTCCCAT 58.485 33.333 0.00 0.00 0.00 4.00
7230 7465 2.139118 GTCAGCTCTCACACAAGAACC 58.861 52.381 0.00 0.00 0.00 3.62
7234 7469 3.036075 TGATGTCAGCTCTCACACAAG 57.964 47.619 0.00 0.00 0.00 3.16
7235 7470 3.473923 TTGATGTCAGCTCTCACACAA 57.526 42.857 0.00 0.00 0.00 3.33
7245 7480 2.490903 ACTCCAAGCATTTGATGTCAGC 59.509 45.455 0.00 0.00 36.36 4.26
7265 7500 7.656542 GTCTTGGCTATTTCCTACCTACAATAC 59.343 40.741 0.00 0.00 0.00 1.89
7321 7556 2.243602 CAACCTTGCACAAAGCCAAT 57.756 45.000 0.00 0.00 44.83 3.16
7342 7577 1.277842 TGCCGGAATCTTAGAAGCACA 59.722 47.619 5.05 0.00 0.00 4.57
7397 7632 0.604578 GCAGCCAATGTGTTCACCAT 59.395 50.000 0.37 0.00 0.00 3.55
7483 7718 1.062121 TCCTCTTCCGGGGATTCATCT 60.062 52.381 0.00 0.00 0.00 2.90
7489 7724 1.627297 GCAGTTCCTCTTCCGGGGAT 61.627 60.000 0.00 0.00 0.00 3.85
7498 7733 1.980765 TGATCTTGTGGCAGTTCCTCT 59.019 47.619 0.00 0.00 35.26 3.69
7501 7736 1.200948 GCTTGATCTTGTGGCAGTTCC 59.799 52.381 0.00 0.00 0.00 3.62
7535 7770 2.831685 TGCGAGTTGTTGGACATACT 57.168 45.000 0.00 0.00 0.00 2.12
7557 7792 4.625742 GTGAACATCTGTTACTGCGTGTAT 59.374 41.667 0.00 0.00 38.56 2.29
7558 7793 3.985279 GTGAACATCTGTTACTGCGTGTA 59.015 43.478 0.00 0.00 38.56 2.90
7599 7834 4.986054 ACAATAAGACACCCAGGTTACA 57.014 40.909 0.00 0.00 0.00 2.41
7655 7890 1.535028 CACTGTATTGGCAGCGTCAAA 59.465 47.619 0.05 0.00 39.96 2.69
7750 7985 2.692557 AGCTTCACTGTCATCGCTAGAT 59.307 45.455 0.00 0.00 37.65 1.98
7765 8000 0.952497 CTGCTTCCGCTTCAGCTTCA 60.952 55.000 0.00 0.00 39.32 3.02
7771 8006 1.079543 GCTCTCTGCTTCCGCTTCA 60.080 57.895 0.00 0.00 38.95 3.02
7819 8054 2.352422 GTCATGCTGGGAGTGGCA 59.648 61.111 0.00 0.00 42.80 4.92
7892 8127 2.481104 CCTCGAGAGAAGGCTTCACATC 60.481 54.545 27.70 19.57 41.32 3.06
7893 8128 1.480137 CCTCGAGAGAAGGCTTCACAT 59.520 52.381 27.70 13.55 41.32 3.21
7993 8228 4.022242 CCAAGAACTTAAGACGACTCCTCA 60.022 45.833 10.09 0.00 0.00 3.86
8129 8365 3.829948 CAAGCTGAAGTGCACCTAAATG 58.170 45.455 14.63 0.69 34.99 2.32
8133 8369 0.108396 TGCAAGCTGAAGTGCACCTA 59.892 50.000 14.63 0.00 45.52 3.08
8161 8397 5.386424 CGTACGTCGATCAAAGCATAATCTG 60.386 44.000 7.22 0.00 42.86 2.90
8177 8413 2.025583 GAATCGAAGCTACGTACGTCG 58.974 52.381 26.53 21.09 46.00 5.12
8189 8425 7.012138 ACAATCTCATTGATCCTTGAATCGAAG 59.988 37.037 3.24 0.00 42.83 3.79
8280 8519 7.282224 CACCGAATTCAGATACCCAAATTAGAA 59.718 37.037 6.22 0.00 0.00 2.10
8281 8520 6.765989 CACCGAATTCAGATACCCAAATTAGA 59.234 38.462 6.22 0.00 0.00 2.10
8282 8521 6.542370 ACACCGAATTCAGATACCCAAATTAG 59.458 38.462 6.22 0.00 0.00 1.73
8283 8522 6.419791 ACACCGAATTCAGATACCCAAATTA 58.580 36.000 6.22 0.00 0.00 1.40
8284 8523 5.261216 ACACCGAATTCAGATACCCAAATT 58.739 37.500 6.22 0.00 0.00 1.82
8285 8524 4.855340 ACACCGAATTCAGATACCCAAAT 58.145 39.130 6.22 0.00 0.00 2.32
8287 8526 3.517901 AGACACCGAATTCAGATACCCAA 59.482 43.478 6.22 0.00 0.00 4.12
8288 8527 3.104512 AGACACCGAATTCAGATACCCA 58.895 45.455 6.22 0.00 0.00 4.51
8336 8575 9.529325 TGAATGATTATAAGGTTGAGTAGTTCG 57.471 33.333 0.00 0.00 0.00 3.95
8355 8594 7.173735 GGCTTTTGGTTGAAATTTCTGAATGAT 59.826 33.333 18.64 0.00 0.00 2.45
8361 8600 4.273235 GTGGGCTTTTGGTTGAAATTTCTG 59.727 41.667 18.64 1.56 0.00 3.02
8380 8619 3.266686 TTGGATGACTGCCCGTGGG 62.267 63.158 0.00 0.00 38.57 4.61
8428 8667 6.016192 TGTTCGGAAGCAAATAATGTGGTAAA 60.016 34.615 0.00 0.00 0.00 2.01
8434 8673 3.758554 AGCTGTTCGGAAGCAAATAATGT 59.241 39.130 4.64 0.00 43.37 2.71
8437 8676 2.747446 GGAGCTGTTCGGAAGCAAATAA 59.253 45.455 0.00 0.00 43.37 1.40
8440 8679 1.227999 CGGAGCTGTTCGGAAGCAAA 61.228 55.000 0.00 0.00 43.37 3.68
8449 8688 4.475135 GGAGGCCCGGAGCTGTTC 62.475 72.222 0.73 4.75 43.05 3.18
8504 8743 4.082787 TGCTAGAAGGCAAAATTACAGTGC 60.083 41.667 0.00 0.00 39.43 4.40
8562 9473 2.946990 GTGGGTTTTTGAGAGTTCGGAA 59.053 45.455 0.00 0.00 0.00 4.30
8572 9483 5.443230 AATTTTTGGAGGTGGGTTTTTGA 57.557 34.783 0.00 0.00 0.00 2.69
8573 9484 5.238432 GCTAATTTTTGGAGGTGGGTTTTTG 59.762 40.000 0.00 0.00 0.00 2.44
8574 9485 5.131977 AGCTAATTTTTGGAGGTGGGTTTTT 59.868 36.000 0.00 0.00 0.00 1.94
8575 9486 4.658435 AGCTAATTTTTGGAGGTGGGTTTT 59.342 37.500 0.00 0.00 0.00 2.43
8576 9487 4.231273 AGCTAATTTTTGGAGGTGGGTTT 58.769 39.130 0.00 0.00 0.00 3.27
8577 9488 3.832490 GAGCTAATTTTTGGAGGTGGGTT 59.168 43.478 0.00 0.00 0.00 4.11
8578 9489 3.076032 AGAGCTAATTTTTGGAGGTGGGT 59.924 43.478 0.00 0.00 0.00 4.51
8579 9490 3.445096 CAGAGCTAATTTTTGGAGGTGGG 59.555 47.826 0.00 0.00 0.00 4.61
8580 9491 3.445096 CCAGAGCTAATTTTTGGAGGTGG 59.555 47.826 0.00 0.00 0.00 4.61
8581 9492 3.445096 CCCAGAGCTAATTTTTGGAGGTG 59.555 47.826 0.00 0.00 0.00 4.00
8582 9493 3.076032 ACCCAGAGCTAATTTTTGGAGGT 59.924 43.478 0.00 0.00 0.00 3.85
8583 9494 3.445096 CACCCAGAGCTAATTTTTGGAGG 59.555 47.826 0.00 0.00 0.00 4.30
8584 9495 3.445096 CCACCCAGAGCTAATTTTTGGAG 59.555 47.826 0.00 0.00 0.00 3.86
8585 9496 3.430453 CCACCCAGAGCTAATTTTTGGA 58.570 45.455 0.00 0.00 0.00 3.53
8586 9497 2.094026 GCCACCCAGAGCTAATTTTTGG 60.094 50.000 0.00 0.00 0.00 3.28
8587 9498 2.562298 TGCCACCCAGAGCTAATTTTTG 59.438 45.455 0.00 0.00 0.00 2.44
8588 9499 2.888212 TGCCACCCAGAGCTAATTTTT 58.112 42.857 0.00 0.00 0.00 1.94
8589 9500 2.603075 TGCCACCCAGAGCTAATTTT 57.397 45.000 0.00 0.00 0.00 1.82
8590 9501 2.025037 TGATGCCACCCAGAGCTAATTT 60.025 45.455 0.00 0.00 0.00 1.82
8591 9502 1.565759 TGATGCCACCCAGAGCTAATT 59.434 47.619 0.00 0.00 0.00 1.40
8592 9503 1.216064 TGATGCCACCCAGAGCTAAT 58.784 50.000 0.00 0.00 0.00 1.73
8593 9504 1.134007 CATGATGCCACCCAGAGCTAA 60.134 52.381 0.00 0.00 0.00 3.09
8594 9505 0.471191 CATGATGCCACCCAGAGCTA 59.529 55.000 0.00 0.00 0.00 3.32
8595 9506 1.226542 CATGATGCCACCCAGAGCT 59.773 57.895 0.00 0.00 0.00 4.09
8596 9507 2.487532 GCATGATGCCACCCAGAGC 61.488 63.158 6.04 0.00 37.42 4.09
8597 9508 3.837578 GCATGATGCCACCCAGAG 58.162 61.111 6.04 0.00 37.42 3.35
8640 9551 3.431207 GCATGCAGGAATTATTGGCAGTT 60.431 43.478 14.21 0.00 37.96 3.16
8654 9565 3.186909 CATTTGTCATTGAGCATGCAGG 58.813 45.455 21.98 0.36 32.13 4.85
8705 9616 0.107703 CGCTACCCACACCACATGAT 60.108 55.000 0.00 0.00 0.00 2.45
8716 9627 2.606519 ACTTGCCTCCGCTACCCA 60.607 61.111 0.00 0.00 35.36 4.51
8720 9631 4.451150 CGCCACTTGCCTCCGCTA 62.451 66.667 0.00 0.00 36.24 4.26
8742 9653 1.375523 CGCCTCTGTAACCCACACC 60.376 63.158 0.00 0.00 32.33 4.16
8743 9654 0.389948 CTCGCCTCTGTAACCCACAC 60.390 60.000 0.00 0.00 32.33 3.82
8746 9657 1.541310 CCACTCGCCTCTGTAACCCA 61.541 60.000 0.00 0.00 0.00 4.51
8747 9658 1.218316 CCACTCGCCTCTGTAACCC 59.782 63.158 0.00 0.00 0.00 4.11
8750 9661 1.591703 CTGCCACTCGCCTCTGTAA 59.408 57.895 0.00 0.00 36.24 2.41
8753 9664 4.383861 TGCTGCCACTCGCCTCTG 62.384 66.667 0.00 0.00 36.24 3.35
8754 9665 4.385405 GTGCTGCCACTCGCCTCT 62.385 66.667 0.00 0.00 38.93 3.69
8764 9675 2.475371 ATCACCCAGACAGTGCTGCC 62.475 60.000 0.00 0.00 35.14 4.85
8766 9677 0.675837 CCATCACCCAGACAGTGCTG 60.676 60.000 7.38 7.38 35.14 4.41
8768 9679 0.392193 CTCCATCACCCAGACAGTGC 60.392 60.000 0.00 0.00 35.14 4.40
8770 9681 1.557269 GCCTCCATCACCCAGACAGT 61.557 60.000 0.00 0.00 0.00 3.55
8772 9683 2.659063 CGCCTCCATCACCCAGACA 61.659 63.158 0.00 0.00 0.00 3.41
8774 9685 2.284625 ACGCCTCCATCACCCAGA 60.285 61.111 0.00 0.00 0.00 3.86
8775 9686 2.124983 CACGCCTCCATCACCCAG 60.125 66.667 0.00 0.00 0.00 4.45
8776 9687 3.716195 CCACGCCTCCATCACCCA 61.716 66.667 0.00 0.00 0.00 4.51
8777 9688 2.876368 CTTCCACGCCTCCATCACCC 62.876 65.000 0.00 0.00 0.00 4.61
8778 9689 1.450312 CTTCCACGCCTCCATCACC 60.450 63.158 0.00 0.00 0.00 4.02
8779 9690 2.109126 GCTTCCACGCCTCCATCAC 61.109 63.158 0.00 0.00 0.00 3.06
8781 9692 2.892425 CGCTTCCACGCCTCCATC 60.892 66.667 0.00 0.00 0.00 3.51
8782 9693 3.376935 CTCGCTTCCACGCCTCCAT 62.377 63.158 0.00 0.00 0.00 3.41
8784 9695 4.070552 ACTCGCTTCCACGCCTCC 62.071 66.667 0.00 0.00 0.00 4.30
8785 9696 2.811317 CACTCGCTTCCACGCCTC 60.811 66.667 0.00 0.00 0.00 4.70
8786 9697 4.379243 CCACTCGCTTCCACGCCT 62.379 66.667 0.00 0.00 0.00 5.52
8810 9721 3.063084 ACTGCTCCGTCCCTCGAC 61.063 66.667 0.00 0.00 42.86 4.20
8811 9722 3.062466 CACTGCTCCGTCCCTCGA 61.062 66.667 0.00 0.00 42.86 4.04
8812 9723 4.135153 CCACTGCTCCGTCCCTCG 62.135 72.222 0.00 0.00 39.52 4.63
8834 9756 4.789075 TTACTGCTCGCCGGCGAC 62.789 66.667 45.37 37.03 44.01 5.19
8840 9762 0.533755 ATGCTGGATTACTGCTCGCC 60.534 55.000 0.00 0.00 43.66 5.54
8851 9773 0.106819 GCCTGACCTTCATGCTGGAT 60.107 55.000 10.18 0.00 35.54 3.41
8852 9774 1.203441 AGCCTGACCTTCATGCTGGA 61.203 55.000 10.18 0.00 44.66 3.86
8853 9775 0.543277 TAGCCTGACCTTCATGCTGG 59.457 55.000 14.11 2.82 45.62 4.85
8854 9776 2.219458 CATAGCCTGACCTTCATGCTG 58.781 52.381 14.11 0.00 45.62 4.41
8857 9779 2.634815 AGCATAGCCTGACCTTCATG 57.365 50.000 0.00 0.00 0.00 3.07
8871 10067 5.029807 TCCATTCACGTTTCCATAGCATA 57.970 39.130 0.00 0.00 0.00 3.14
8878 10074 2.920724 TCACTCCATTCACGTTTCCA 57.079 45.000 0.00 0.00 0.00 3.53
8893 10089 8.225603 AGTTTGTGAGACAACATTTATTCACT 57.774 30.769 4.36 0.00 37.90 3.41
8894 10090 7.591426 GGAGTTTGTGAGACAACATTTATTCAC 59.409 37.037 0.00 0.00 37.90 3.18
8918 10171 2.947652 CGTAGGGTTTGTATCGAGAGGA 59.052 50.000 0.00 0.00 0.00 3.71
8920 10173 2.358267 AGCGTAGGGTTTGTATCGAGAG 59.642 50.000 0.00 0.00 0.00 3.20
8924 10177 1.135527 TCCAGCGTAGGGTTTGTATCG 59.864 52.381 0.00 0.00 0.00 2.92
9098 10359 5.183140 AGCAGTAACATTGTAATTGGTGGTC 59.817 40.000 0.00 0.00 0.00 4.02
9189 10450 0.594602 CTCCCAGTTGTGTGCACATG 59.405 55.000 24.69 16.74 41.52 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.