Multiple sequence alignment - TraesCS7B01G110700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G110700 chr7B 100.000 6080 0 0 1 6080 126734787 126740866 0.000000e+00 11228.0
1 TraesCS7B01G110700 chr7B 84.810 79 10 2 232 308 164693120 164693042 1.820000e-10 78.7
2 TraesCS7B01G110700 chr7D 94.613 4641 179 34 781 5376 164406160 164410774 0.000000e+00 7119.0
3 TraesCS7B01G110700 chr7D 94.298 684 18 5 5416 6080 164410778 164411459 0.000000e+00 1027.0
4 TraesCS7B01G110700 chr7D 88.701 177 11 2 340 516 164405763 164405930 2.220000e-49 207.0
5 TraesCS7B01G110700 chr7D 88.679 106 9 1 515 617 164405957 164406062 6.400000e-25 126.0
6 TraesCS7B01G110700 chr7D 89.655 87 5 4 632 717 164406049 164406132 2.320000e-19 108.0
7 TraesCS7B01G110700 chr7D 100.000 29 0 0 5381 5409 412872256 412872228 3.000000e-03 54.7
8 TraesCS7B01G110700 chr7A 94.025 3766 188 19 728 4475 165902815 165906561 0.000000e+00 5674.0
9 TraesCS7B01G110700 chr7A 91.929 731 51 4 4654 5376 165906686 165907416 0.000000e+00 1016.0
10 TraesCS7B01G110700 chr7A 91.892 370 19 6 5665 6032 165909577 165909937 1.960000e-139 507.0
11 TraesCS7B01G110700 chr7A 91.603 262 14 3 5416 5671 165907420 165907679 7.500000e-94 355.0
12 TraesCS7B01G110700 chr7A 83.946 299 30 7 221 516 165900824 165901107 2.790000e-68 270.0
13 TraesCS7B01G110700 chr7A 98.214 56 1 0 644 699 165902766 165902821 1.390000e-16 99.0
14 TraesCS7B01G110700 chr7A 92.105 38 3 0 4506 4543 165906560 165906597 3.000000e-03 54.7
15 TraesCS7B01G110700 chr6D 86.861 137 17 1 1 137 451340292 451340157 1.060000e-32 152.0
16 TraesCS7B01G110700 chr4A 85.616 146 19 2 1 146 577050829 577050686 1.060000e-32 152.0
17 TraesCS7B01G110700 chr4A 86.861 137 16 2 1 137 617093545 617093679 1.060000e-32 152.0
18 TraesCS7B01G110700 chr4A 81.667 120 18 4 192 308 569885698 569885580 5.020000e-16 97.1
19 TraesCS7B01G110700 chr1B 86.232 138 17 2 1 137 549897701 549897837 1.370000e-31 148.0
20 TraesCS7B01G110700 chr5B 86.131 137 17 2 1 137 321473677 321473811 4.910000e-31 147.0
21 TraesCS7B01G110700 chr4D 86.131 137 18 1 1 137 7422172 7422037 4.910000e-31 147.0
22 TraesCS7B01G110700 chr5A 86.154 130 16 2 1 130 488426765 488426892 8.220000e-29 139.0
23 TraesCS7B01G110700 chr1A 86.154 130 16 2 1 130 514868359 514868486 8.220000e-29 139.0
24 TraesCS7B01G110700 chr1A 86.154 130 16 2 1 130 515124604 515124731 8.220000e-29 139.0
25 TraesCS7B01G110700 chr2D 86.420 81 8 3 232 309 207545092 207545012 1.090000e-12 86.1
26 TraesCS7B01G110700 chr2D 86.250 80 8 3 232 308 207547526 207547447 3.910000e-12 84.2
27 TraesCS7B01G110700 chr2D 86.250 80 8 3 232 308 414963874 414963953 3.910000e-12 84.2
28 TraesCS7B01G110700 chr1D 84.444 90 11 3 221 308 4652309 4652397 1.090000e-12 86.1
29 TraesCS7B01G110700 chr1D 86.250 80 8 3 232 308 61777419 61777498 3.910000e-12 84.2
30 TraesCS7B01G110700 chr1D 84.810 79 10 2 232 308 78380890 78380812 1.820000e-10 78.7
31 TraesCS7B01G110700 chr6B 100.000 31 0 0 5379 5409 258467611 258467581 2.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G110700 chr7B 126734787 126740866 6079 False 11228.000000 11228 100.000000 1 6080 1 chr7B.!!$F1 6079
1 TraesCS7B01G110700 chr7D 164405763 164411459 5696 False 1717.400000 7119 91.189200 340 6080 5 chr7D.!!$F1 5740
2 TraesCS7B01G110700 chr7A 165900824 165909937 9113 False 1139.385714 5674 91.959143 221 6032 7 chr7A.!!$F1 5811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.179054 GGATGGGCCTTTCCGTAGTC 60.179 60.000 4.53 0.0 34.94 2.59 F
865 2439 0.180406 GTTGTCGGCTATGATGGGGT 59.820 55.000 0.00 0.0 0.00 4.95 F
1373 2958 1.068753 CTCCAGGCGGCTCATACTG 59.931 63.158 9.32 0.0 0.00 2.74 F
1791 3376 0.980231 ACTCAGTGGCTCCATCCCTC 60.980 60.000 0.00 0.0 0.00 4.30 F
2579 4164 1.219213 AGGTTTGTTGGTGGAATCCCA 59.781 47.619 0.00 0.0 40.95 4.37 F
3133 4718 0.456653 CTACAACTTGGCGGCAATGC 60.457 55.000 25.71 0.0 0.00 3.56 F
4067 5655 0.751643 ACCCAGCCATTATTCACCGC 60.752 55.000 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 3178 0.035881 TCCAGCAGGTCAAGCAGAAG 59.964 55.000 0.00 0.00 35.89 2.85 R
1718 3303 0.110486 GGTTCTTGAACAGCCCCTCA 59.890 55.000 14.38 0.00 0.00 3.86 R
2839 4424 1.110442 TGGACCACCAAGCTTGTTTG 58.890 50.000 24.35 19.33 43.91 2.93 R
3133 4718 1.577736 AGGGAGATGACCACCAAGAG 58.422 55.000 0.00 0.00 0.00 2.85 R
4292 5880 0.737219 AATCAATCGCAGCAAGCTCC 59.263 50.000 0.00 0.00 42.61 4.70 R
4722 6340 0.885879 CCACTCCGTAGCTGTACACA 59.114 55.000 0.00 0.00 0.00 3.72 R
5089 6707 1.628846 ACCCCTTACTACAACTGCTGG 59.371 52.381 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.723348 GTCTGCCACGCGGGTTTC 61.723 66.667 12.47 0.00 39.65 2.78
48 49 4.243008 TCTGCCACGCGGGTTTCA 62.243 61.111 12.47 2.71 39.65 2.69
49 50 4.025401 CTGCCACGCGGGTTTCAC 62.025 66.667 12.47 0.00 39.65 3.18
50 51 4.555709 TGCCACGCGGGTTTCACT 62.556 61.111 12.47 0.00 39.65 3.41
51 52 4.025401 GCCACGCGGGTTTCACTG 62.025 66.667 12.47 0.00 39.65 3.66
52 53 3.353836 CCACGCGGGTTTCACTGG 61.354 66.667 12.47 1.67 0.00 4.00
53 54 3.353836 CACGCGGGTTTCACTGGG 61.354 66.667 12.47 0.00 35.93 4.45
108 109 3.717294 CAGCGCCTAGGGTTGGGT 61.717 66.667 11.72 0.00 0.00 4.51
109 110 3.400054 AGCGCCTAGGGTTGGGTC 61.400 66.667 11.72 0.00 0.00 4.46
110 111 4.832608 GCGCCTAGGGTTGGGTCG 62.833 72.222 11.72 4.55 0.00 4.79
111 112 4.832608 CGCCTAGGGTTGGGTCGC 62.833 72.222 11.72 0.00 0.00 5.19
112 113 4.484872 GCCTAGGGTTGGGTCGCC 62.485 72.222 11.72 0.00 0.00 5.54
113 114 3.793888 CCTAGGGTTGGGTCGCCC 61.794 72.222 0.00 7.87 45.71 6.13
124 125 4.131088 GTCGCCCCCGAGTCACTC 62.131 72.222 0.00 0.00 45.38 3.51
125 126 4.671590 TCGCCCCCGAGTCACTCA 62.672 66.667 5.45 0.00 38.82 3.41
126 127 4.135153 CGCCCCCGAGTCACTCAG 62.135 72.222 5.45 0.00 36.29 3.35
127 128 3.775654 GCCCCCGAGTCACTCAGG 61.776 72.222 5.45 2.27 0.00 3.86
128 129 3.077556 CCCCCGAGTCACTCAGGG 61.078 72.222 18.55 18.55 45.33 4.45
129 130 3.775654 CCCCGAGTCACTCAGGGC 61.776 72.222 22.57 0.00 40.78 5.19
130 131 4.135153 CCCGAGTCACTCAGGGCG 62.135 72.222 18.21 0.00 37.45 6.13
131 132 4.135153 CCGAGTCACTCAGGGCGG 62.135 72.222 5.45 0.00 0.00 6.13
132 133 4.135153 CGAGTCACTCAGGGCGGG 62.135 72.222 5.45 0.00 0.00 6.13
133 134 3.775654 GAGTCACTCAGGGCGGGG 61.776 72.222 0.00 0.00 0.00 5.73
147 148 3.631046 GGGGGCGGCTCTAGGATG 61.631 72.222 9.45 0.00 0.00 3.51
148 149 3.631046 GGGGCGGCTCTAGGATGG 61.631 72.222 9.56 0.00 0.00 3.51
149 150 3.631046 GGGCGGCTCTAGGATGGG 61.631 72.222 9.56 0.00 0.00 4.00
150 151 4.321966 GGCGGCTCTAGGATGGGC 62.322 72.222 0.00 0.00 0.00 5.36
151 152 4.321966 GCGGCTCTAGGATGGGCC 62.322 72.222 0.00 0.00 41.02 5.80
160 161 4.878878 GGATGGGCCTTTCCGTAG 57.121 61.111 4.53 0.00 34.94 3.51
161 162 1.912971 GGATGGGCCTTTCCGTAGT 59.087 57.895 4.53 0.00 34.94 2.73
162 163 0.179054 GGATGGGCCTTTCCGTAGTC 60.179 60.000 4.53 0.00 34.94 2.59
163 164 0.179054 GATGGGCCTTTCCGTAGTCC 60.179 60.000 4.53 0.00 34.94 3.85
164 165 1.632965 ATGGGCCTTTCCGTAGTCCC 61.633 60.000 4.53 0.00 34.94 4.46
165 166 2.588439 GGCCTTTCCGTAGTCCCC 59.412 66.667 0.00 0.00 0.00 4.81
166 167 2.186125 GCCTTTCCGTAGTCCCCG 59.814 66.667 0.00 0.00 0.00 5.73
167 168 2.353610 GCCTTTCCGTAGTCCCCGA 61.354 63.158 0.00 0.00 0.00 5.14
168 169 1.891722 GCCTTTCCGTAGTCCCCGAA 61.892 60.000 0.00 0.00 0.00 4.30
169 170 0.609662 CCTTTCCGTAGTCCCCGAAA 59.390 55.000 0.00 0.00 0.00 3.46
170 171 1.208776 CCTTTCCGTAGTCCCCGAAAT 59.791 52.381 0.00 0.00 0.00 2.17
171 172 2.355412 CCTTTCCGTAGTCCCCGAAATT 60.355 50.000 0.00 0.00 0.00 1.82
172 173 2.678471 TTCCGTAGTCCCCGAAATTC 57.322 50.000 0.00 0.00 0.00 2.17
173 174 1.856629 TCCGTAGTCCCCGAAATTCT 58.143 50.000 0.00 0.00 0.00 2.40
174 175 1.479323 TCCGTAGTCCCCGAAATTCTG 59.521 52.381 0.00 0.00 0.00 3.02
175 176 1.479323 CCGTAGTCCCCGAAATTCTGA 59.521 52.381 0.00 0.00 0.00 3.27
176 177 2.093869 CCGTAGTCCCCGAAATTCTGAA 60.094 50.000 0.00 0.00 0.00 3.02
177 178 3.431766 CCGTAGTCCCCGAAATTCTGAAT 60.432 47.826 0.00 0.00 0.00 2.57
178 179 4.189231 CGTAGTCCCCGAAATTCTGAATT 58.811 43.478 9.76 9.76 0.00 2.17
179 180 5.353938 CGTAGTCCCCGAAATTCTGAATTA 58.646 41.667 15.45 0.00 0.00 1.40
180 181 5.233689 CGTAGTCCCCGAAATTCTGAATTAC 59.766 44.000 15.45 9.18 0.00 1.89
181 182 5.437191 AGTCCCCGAAATTCTGAATTACT 57.563 39.130 15.45 11.10 0.00 2.24
182 183 5.816682 AGTCCCCGAAATTCTGAATTACTT 58.183 37.500 15.45 0.98 0.00 2.24
183 184 6.954232 AGTCCCCGAAATTCTGAATTACTTA 58.046 36.000 15.45 0.00 0.00 2.24
184 185 7.048512 AGTCCCCGAAATTCTGAATTACTTAG 58.951 38.462 15.45 6.16 0.00 2.18
185 186 6.260271 GTCCCCGAAATTCTGAATTACTTAGG 59.740 42.308 15.45 12.48 0.00 2.69
186 187 6.157297 TCCCCGAAATTCTGAATTACTTAGGA 59.843 38.462 15.45 14.21 0.00 2.94
187 188 6.826741 CCCCGAAATTCTGAATTACTTAGGAA 59.173 38.462 15.45 0.00 0.00 3.36
188 189 7.338449 CCCCGAAATTCTGAATTACTTAGGAAA 59.662 37.037 15.45 0.00 0.00 3.13
189 190 8.736244 CCCGAAATTCTGAATTACTTAGGAAAA 58.264 33.333 15.45 0.00 0.00 2.29
208 209 8.961294 AGGAAAAATTTTGTGATGAAATGACA 57.039 26.923 3.73 0.00 39.15 3.58
209 210 9.563748 AGGAAAAATTTTGTGATGAAATGACAT 57.436 25.926 3.73 0.00 40.97 3.06
212 213 9.953697 AAAAATTTTGTGATGAAATGACATTGG 57.046 25.926 3.73 0.00 40.97 3.16
213 214 8.680039 AAATTTTGTGATGAAATGACATTGGT 57.320 26.923 0.34 0.00 40.97 3.67
214 215 7.661127 ATTTTGTGATGAAATGACATTGGTG 57.339 32.000 0.34 0.00 40.97 4.17
215 216 4.787260 TGTGATGAAATGACATTGGTGG 57.213 40.909 0.34 0.00 34.84 4.61
216 217 4.405548 TGTGATGAAATGACATTGGTGGA 58.594 39.130 0.34 0.00 34.84 4.02
217 218 4.460034 TGTGATGAAATGACATTGGTGGAG 59.540 41.667 0.34 0.00 34.84 3.86
218 219 3.444742 TGATGAAATGACATTGGTGGAGC 59.555 43.478 0.34 0.00 0.00 4.70
219 220 1.811965 TGAAATGACATTGGTGGAGCG 59.188 47.619 0.34 0.00 0.00 5.03
237 238 2.860735 AGCGTCGATGCTATGAAAAGAC 59.139 45.455 30.14 0.00 45.14 3.01
239 240 3.302092 GCGTCGATGCTATGAAAAGACTG 60.302 47.826 22.31 0.00 0.00 3.51
244 245 5.700832 TCGATGCTATGAAAAGACTGTTGTT 59.299 36.000 0.00 0.00 0.00 2.83
246 247 5.437289 TGCTATGAAAAGACTGTTGTTGG 57.563 39.130 0.00 0.00 0.00 3.77
248 249 5.592282 TGCTATGAAAAGACTGTTGTTGGAA 59.408 36.000 0.00 0.00 0.00 3.53
249 250 6.145535 GCTATGAAAAGACTGTTGTTGGAAG 58.854 40.000 0.00 0.00 0.00 3.46
250 251 6.238759 GCTATGAAAAGACTGTTGTTGGAAGT 60.239 38.462 0.00 0.00 0.00 3.01
251 252 7.041372 GCTATGAAAAGACTGTTGTTGGAAGTA 60.041 37.037 0.00 0.00 0.00 2.24
255 256 7.973388 TGAAAAGACTGTTGTTGGAAGTATTTG 59.027 33.333 0.00 0.00 35.98 2.32
262 263 5.304101 TGTTGTTGGAAGTATTTGGAGCATT 59.696 36.000 0.00 0.00 0.00 3.56
282 283 6.149807 AGCATTGATTTTGTTATTTTGCCCAG 59.850 34.615 0.00 0.00 0.00 4.45
289 290 2.109128 TGTTATTTTGCCCAGACCTCCA 59.891 45.455 0.00 0.00 0.00 3.86
291 292 0.251787 ATTTTGCCCAGACCTCCACC 60.252 55.000 0.00 0.00 0.00 4.61
307 308 5.418840 ACCTCCACCAATGTTATTTCATCAC 59.581 40.000 0.00 0.00 0.00 3.06
309 310 6.097270 CCTCCACCAATGTTATTTCATCACAT 59.903 38.462 0.00 0.00 32.31 3.21
310 311 7.364056 CCTCCACCAATGTTATTTCATCACATT 60.364 37.037 0.00 0.00 40.94 2.71
311 312 7.905265 TCCACCAATGTTATTTCATCACATTT 58.095 30.769 0.00 0.00 38.75 2.32
324 327 3.295553 TCACATTTTTGTTTTTGCGCG 57.704 38.095 0.00 0.00 0.00 6.86
332 335 4.684193 TTTGTTTTTGCGCGTATTTCAG 57.316 36.364 8.43 0.00 0.00 3.02
338 341 3.840890 TTGCGCGTATTTCAGGAAAAT 57.159 38.095 8.43 0.00 40.67 1.82
529 562 3.326747 CACCCGAACTAAAGTGAGGAAG 58.673 50.000 5.89 0.00 31.79 3.46
533 566 5.169295 CCCGAACTAAAGTGAGGAAGTTAG 58.831 45.833 5.89 0.00 32.51 2.34
571 2128 4.756084 AAATGAAAAGAGAAGGACAGCG 57.244 40.909 0.00 0.00 0.00 5.18
575 2132 2.191128 AAAGAGAAGGACAGCGCAAT 57.809 45.000 11.47 0.00 0.00 3.56
576 2133 1.446907 AAGAGAAGGACAGCGCAATG 58.553 50.000 11.47 1.67 0.00 2.82
617 2179 9.914923 GGAAAAGAAAATGACAACACAAAATAC 57.085 29.630 0.00 0.00 0.00 1.89
692 2254 1.407437 GGGCCAGTTCATGTAGTCCAG 60.407 57.143 4.39 0.00 0.00 3.86
693 2255 1.373570 GCCAGTTCATGTAGTCCAGC 58.626 55.000 0.00 0.00 0.00 4.85
694 2256 2.014068 GCCAGTTCATGTAGTCCAGCC 61.014 57.143 0.00 0.00 0.00 4.85
695 2257 1.407437 CCAGTTCATGTAGTCCAGCCC 60.407 57.143 0.00 0.00 0.00 5.19
696 2258 1.278985 CAGTTCATGTAGTCCAGCCCA 59.721 52.381 0.00 0.00 0.00 5.36
697 2259 2.092753 CAGTTCATGTAGTCCAGCCCAT 60.093 50.000 0.00 0.00 0.00 4.00
698 2260 2.578021 AGTTCATGTAGTCCAGCCCATT 59.422 45.455 0.00 0.00 0.00 3.16
699 2261 3.780294 AGTTCATGTAGTCCAGCCCATTA 59.220 43.478 0.00 0.00 0.00 1.90
700 2262 4.413520 AGTTCATGTAGTCCAGCCCATTAT 59.586 41.667 0.00 0.00 0.00 1.28
701 2263 4.356405 TCATGTAGTCCAGCCCATTATG 57.644 45.455 0.00 0.00 0.00 1.90
702 2264 3.716353 TCATGTAGTCCAGCCCATTATGT 59.284 43.478 0.00 0.00 0.00 2.29
703 2265 4.165950 TCATGTAGTCCAGCCCATTATGTT 59.834 41.667 0.00 0.00 0.00 2.71
704 2266 4.584638 TGTAGTCCAGCCCATTATGTTT 57.415 40.909 0.00 0.00 0.00 2.83
705 2267 4.523083 TGTAGTCCAGCCCATTATGTTTC 58.477 43.478 0.00 0.00 0.00 2.78
706 2268 3.737559 AGTCCAGCCCATTATGTTTCA 57.262 42.857 0.00 0.00 0.00 2.69
707 2269 3.624777 AGTCCAGCCCATTATGTTTCAG 58.375 45.455 0.00 0.00 0.00 3.02
708 2270 3.266772 AGTCCAGCCCATTATGTTTCAGA 59.733 43.478 0.00 0.00 0.00 3.27
709 2271 3.629398 GTCCAGCCCATTATGTTTCAGAG 59.371 47.826 0.00 0.00 0.00 3.35
710 2272 2.954318 CCAGCCCATTATGTTTCAGAGG 59.046 50.000 0.00 0.00 0.00 3.69
711 2273 2.954318 CAGCCCATTATGTTTCAGAGGG 59.046 50.000 0.00 0.00 37.87 4.30
712 2274 2.091665 AGCCCATTATGTTTCAGAGGGG 60.092 50.000 0.00 0.00 35.36 4.79
713 2275 2.949447 CCCATTATGTTTCAGAGGGGG 58.051 52.381 0.00 0.00 0.00 5.40
714 2276 2.513738 CCCATTATGTTTCAGAGGGGGA 59.486 50.000 0.00 0.00 34.97 4.81
715 2277 3.555966 CCATTATGTTTCAGAGGGGGAC 58.444 50.000 0.00 0.00 0.00 4.46
716 2278 3.203040 CCATTATGTTTCAGAGGGGGACT 59.797 47.826 0.00 0.00 0.00 3.85
717 2279 4.455606 CATTATGTTTCAGAGGGGGACTC 58.544 47.826 0.00 0.00 46.98 3.36
724 2286 2.990479 GAGGGGGACTCGTGCAAT 59.010 61.111 0.00 0.00 36.29 3.56
725 2287 1.450312 GAGGGGGACTCGTGCAATG 60.450 63.158 0.00 0.00 36.29 2.82
726 2288 2.438434 GGGGGACTCGTGCAATGG 60.438 66.667 0.00 0.00 0.00 3.16
785 2353 4.824515 AGCTCGGGAGGTCGGGAG 62.825 72.222 0.00 0.00 33.18 4.30
795 2363 2.975799 GTCGGGAGCACGCCAAAA 60.976 61.111 0.00 0.00 0.00 2.44
796 2364 2.668212 TCGGGAGCACGCCAAAAG 60.668 61.111 0.00 0.00 0.00 2.27
797 2365 4.404654 CGGGAGCACGCCAAAAGC 62.405 66.667 0.00 0.00 38.52 3.51
850 2424 2.280592 GCCAACGACGGAGGTTGT 60.281 61.111 12.42 0.00 42.42 3.32
851 2425 2.315386 GCCAACGACGGAGGTTGTC 61.315 63.158 12.42 0.00 42.42 3.18
865 2439 0.180406 GTTGTCGGCTATGATGGGGT 59.820 55.000 0.00 0.00 0.00 4.95
1041 2624 1.078848 GCGTTCATCCTCCAGCTGT 60.079 57.895 13.81 0.00 0.00 4.40
1162 2747 1.554617 GGGGGCATACAACTGCAATTT 59.445 47.619 0.00 0.00 44.12 1.82
1190 2775 9.265901 GCATATACTACATCTTGTCTTGTTGAT 57.734 33.333 0.00 0.00 0.00 2.57
1273 2858 4.843516 TCAGGAACAAATGGGGCTAATTTT 59.156 37.500 0.00 0.00 0.00 1.82
1373 2958 1.068753 CTCCAGGCGGCTCATACTG 59.931 63.158 9.32 0.00 0.00 2.74
1575 3160 1.115930 CATCTCCGGTCCGATCCCTT 61.116 60.000 14.39 0.00 0.00 3.95
1583 3168 3.067106 CGGTCCGATCCCTTATGAATTG 58.933 50.000 4.91 0.00 0.00 2.32
1593 3178 6.790232 TCCCTTATGAATTGGGAAATTGTC 57.210 37.500 0.00 0.00 46.06 3.18
1604 3189 3.569701 TGGGAAATTGTCTTCTGCTTGAC 59.430 43.478 0.00 0.00 0.00 3.18
1622 3207 1.525923 CCTGCTGGATCTGTCAGGG 59.474 63.158 2.92 1.03 41.71 4.45
1784 3369 3.944087 AGACAATAAACTCAGTGGCTCC 58.056 45.455 0.00 0.00 19.73 4.70
1791 3376 0.980231 ACTCAGTGGCTCCATCCCTC 60.980 60.000 0.00 0.00 0.00 4.30
1977 3562 1.294780 CTCGTGCTCTTTGAGGCCT 59.705 57.895 3.86 3.86 0.00 5.19
1997 3582 4.791734 GCCTACAACAACAGTTTTACAGGC 60.792 45.833 6.85 6.85 0.00 4.85
2147 3732 1.781786 GTCTCTCTGGCCAGATACCA 58.218 55.000 35.11 17.99 36.76 3.25
2171 3756 7.167468 CCAACTTCACTCGGTTTATTGAAAAAG 59.833 37.037 0.00 0.00 0.00 2.27
2276 3861 3.749981 CTGGACGCAAACCAGCTT 58.250 55.556 7.67 0.00 46.30 3.74
2395 3980 3.706055 GCATCCAAGGCCTCGAATA 57.294 52.632 5.23 0.00 0.00 1.75
2396 3981 2.191128 GCATCCAAGGCCTCGAATAT 57.809 50.000 5.23 0.00 0.00 1.28
2462 4047 1.600916 GGCCGAGTTGAAGCACCTT 60.601 57.895 0.00 0.00 0.00 3.50
2543 4128 7.608376 GGGATTAACAGCCCTTTAATAGAGATC 59.392 40.741 0.00 0.00 41.31 2.75
2579 4164 1.219213 AGGTTTGTTGGTGGAATCCCA 59.781 47.619 0.00 0.00 40.95 4.37
2839 4424 1.726853 ACAGCGATAAACTGGTCTGC 58.273 50.000 0.00 0.00 39.55 4.26
3133 4718 0.456653 CTACAACTTGGCGGCAATGC 60.457 55.000 25.71 0.00 0.00 3.56
3140 4725 3.064324 GGCGGCAATGCTCTTGGT 61.064 61.111 4.82 0.00 34.52 3.67
3166 4751 6.240118 GGTCATCTCCCTTCATCATTAGGAAT 60.240 42.308 0.00 0.00 33.13 3.01
3257 4842 1.383523 GCTACTTGGTGGATCTTGCC 58.616 55.000 0.00 0.00 0.00 4.52
3329 4914 5.126545 AGGAAGTCTACGTGCATTGTATACA 59.873 40.000 0.08 0.08 0.00 2.29
3404 4992 5.123344 ACGGTTTATGAATTCTACACCAAGC 59.877 40.000 7.05 0.86 0.00 4.01
3410 4998 4.415596 TGAATTCTACACCAAGCCCATTT 58.584 39.130 7.05 0.00 0.00 2.32
3448 5036 3.667360 TCTGTGTGTCTTGTCATGATGG 58.333 45.455 0.00 0.00 0.00 3.51
3565 5153 4.282195 TCTTGGTTCAGTTTTTGTTGGTGT 59.718 37.500 0.00 0.00 0.00 4.16
3950 5538 6.543831 ACAATGGTAGCCTTTATGATGTTCTC 59.456 38.462 0.00 0.00 0.00 2.87
3957 5545 4.147321 CCTTTATGATGTTCTCCATGGGG 58.853 47.826 13.02 9.18 32.56 4.96
3977 5565 1.380524 CTGAGCCAGCTCCAATTCTG 58.619 55.000 16.69 0.00 42.09 3.02
4040 5628 5.648092 ACATGGTTTAGCTTATCTCCACAAC 59.352 40.000 0.00 0.00 0.00 3.32
4067 5655 0.751643 ACCCAGCCATTATTCACCGC 60.752 55.000 0.00 0.00 0.00 5.68
4078 5666 5.220777 CCATTATTCACCGCGACATTAAACT 60.221 40.000 8.23 0.00 0.00 2.66
4175 5763 2.079925 CCTGCTGCTTCAGAAACTACC 58.920 52.381 0.00 0.00 36.19 3.18
4182 5770 3.007506 TGCTTCAGAAACTACCGGAATCA 59.992 43.478 9.46 0.00 0.00 2.57
4196 5784 2.170166 GGAATCATTGGCACTGTTGGA 58.830 47.619 4.67 0.00 0.00 3.53
4297 5885 1.002430 TGCATTCTTCTGTTCGGAGCT 59.998 47.619 0.00 0.00 0.00 4.09
4299 5887 2.159599 GCATTCTTCTGTTCGGAGCTTG 60.160 50.000 0.00 0.00 0.00 4.01
4306 5894 2.103042 GTTCGGAGCTTGCTGCGAT 61.103 57.895 32.26 0.00 45.77 4.58
4389 5980 9.573133 CAGAATTTGTATCCATTCCTTGTTAAC 57.427 33.333 0.00 0.00 30.75 2.01
4419 6011 8.341892 AGCTTATTCAAGAGAAAAAGGGTAAG 57.658 34.615 0.00 0.00 37.29 2.34
4431 6023 7.455058 AGAAAAAGGGTAAGTTTGGTTGTTTT 58.545 30.769 0.00 0.00 0.00 2.43
4484 6076 7.956420 TCGTTTGACAAATAGTAGAACATGT 57.044 32.000 3.49 0.00 0.00 3.21
4498 6090 7.556844 AGTAGAACATGTAGTACAAGAATGGG 58.443 38.462 12.27 0.00 0.00 4.00
4499 6091 6.620877 AGAACATGTAGTACAAGAATGGGA 57.379 37.500 12.27 0.00 0.00 4.37
4500 6092 7.016153 AGAACATGTAGTACAAGAATGGGAA 57.984 36.000 12.27 0.00 0.00 3.97
4501 6093 7.458397 AGAACATGTAGTACAAGAATGGGAAA 58.542 34.615 12.27 0.00 0.00 3.13
4502 6094 7.390718 AGAACATGTAGTACAAGAATGGGAAAC 59.609 37.037 12.27 0.00 0.00 2.78
4533 6125 7.905493 GCTTGCTAAATCTGTAAATACACTGAC 59.095 37.037 0.00 0.00 31.93 3.51
4534 6126 7.520119 TGCTAAATCTGTAAATACACTGACG 57.480 36.000 0.00 0.00 31.93 4.35
4543 6135 4.415881 AAATACACTGACGATGGGCATA 57.584 40.909 0.00 0.00 0.00 3.14
4544 6136 4.415881 AATACACTGACGATGGGCATAA 57.584 40.909 0.00 0.00 0.00 1.90
4545 6137 4.623932 ATACACTGACGATGGGCATAAT 57.376 40.909 0.00 0.00 0.00 1.28
4546 6138 5.738619 ATACACTGACGATGGGCATAATA 57.261 39.130 0.00 0.00 0.00 0.98
4547 6139 3.728845 ACACTGACGATGGGCATAATAC 58.271 45.455 0.00 0.00 0.00 1.89
4548 6140 2.731451 CACTGACGATGGGCATAATACG 59.269 50.000 0.00 0.00 0.00 3.06
4550 6142 3.181469 ACTGACGATGGGCATAATACGTT 60.181 43.478 0.00 0.00 34.26 3.99
4551 6143 3.127589 TGACGATGGGCATAATACGTTG 58.872 45.455 0.00 0.00 34.26 4.10
4552 6144 1.871039 ACGATGGGCATAATACGTTGC 59.129 47.619 0.00 0.00 38.14 4.17
4573 6191 5.514059 GCAAATACGTGCACATTGAAAAT 57.486 34.783 18.64 0.00 44.29 1.82
4596 6214 5.299949 TCTAATGTGCATATACAGCCACAG 58.700 41.667 0.00 0.00 33.44 3.66
4621 6239 6.580416 GCTTCTTTCTGCTCATACTTTTGAAC 59.420 38.462 0.00 0.00 0.00 3.18
4625 6243 5.227569 TCTGCTCATACTTTTGAACTGGA 57.772 39.130 0.00 0.00 0.00 3.86
4626 6244 5.240891 TCTGCTCATACTTTTGAACTGGAG 58.759 41.667 0.00 0.00 0.00 3.86
4628 6246 4.997395 TGCTCATACTTTTGAACTGGAGAC 59.003 41.667 0.00 0.00 0.00 3.36
4630 6248 5.121454 GCTCATACTTTTGAACTGGAGACTG 59.879 44.000 0.00 0.00 0.00 3.51
4634 6252 4.446371 ACTTTTGAACTGGAGACTGAGTG 58.554 43.478 0.00 0.00 0.00 3.51
4635 6253 4.162320 ACTTTTGAACTGGAGACTGAGTGA 59.838 41.667 0.00 0.00 0.00 3.41
4647 6265 5.744345 GGAGACTGAGTGACATTGTATTACG 59.256 44.000 0.00 0.00 0.00 3.18
4648 6266 5.103000 AGACTGAGTGACATTGTATTACGC 58.897 41.667 0.00 0.00 0.00 4.42
4722 6340 3.133003 CCAGGAGTACCATTGAGTTCGAT 59.867 47.826 0.00 0.00 38.94 3.59
4945 6563 1.344438 CGATAGCCCTTAGATGCACCA 59.656 52.381 0.00 0.00 0.00 4.17
5015 6633 2.509336 ACGTGCTAGGCGTGATGC 60.509 61.111 0.00 0.00 41.33 3.91
5063 6681 0.398318 GGTTCCAGCAGTTCCTGTCT 59.602 55.000 0.00 0.00 33.43 3.41
5089 6707 1.340889 TGGCAACCTGATGTTTTGCTC 59.659 47.619 5.59 0.00 44.18 4.26
5108 6726 1.906574 TCCAGCAGTTGTAGTAAGGGG 59.093 52.381 0.00 0.00 0.00 4.79
5121 6739 3.562182 AGTAAGGGGTTGTTTGGTTCAG 58.438 45.455 0.00 0.00 0.00 3.02
5155 6775 9.495572 GTAGAGGAAAATTATAGGAACATGAGG 57.504 37.037 0.00 0.00 0.00 3.86
5166 6786 9.973661 TTATAGGAACATGAGGATTTCTTTTGA 57.026 29.630 0.00 0.00 0.00 2.69
5202 6822 7.444792 TCATTCATTTGGTTCAAAGGGAAAATG 59.555 33.333 11.46 10.47 36.76 2.32
5379 7007 7.471721 TGACTTTGATTTGACTGTGTTTAGTG 58.528 34.615 0.00 0.00 0.00 2.74
5380 7008 7.335673 TGACTTTGATTTGACTGTGTTTAGTGA 59.664 33.333 0.00 0.00 0.00 3.41
5381 7009 8.050778 ACTTTGATTTGACTGTGTTTAGTGAA 57.949 30.769 0.00 0.00 0.00 3.18
5382 7010 7.968405 ACTTTGATTTGACTGTGTTTAGTGAAC 59.032 33.333 0.00 0.00 38.78 3.18
5383 7011 7.624360 TTGATTTGACTGTGTTTAGTGAACT 57.376 32.000 0.00 0.00 39.08 3.01
5384 7012 8.725405 TTGATTTGACTGTGTTTAGTGAACTA 57.275 30.769 0.00 0.00 39.08 2.24
5385 7013 8.725405 TGATTTGACTGTGTTTAGTGAACTAA 57.275 30.769 0.00 0.00 39.08 2.24
5386 7014 9.168451 TGATTTGACTGTGTTTAGTGAACTAAA 57.832 29.630 10.83 10.83 43.77 1.85
5387 7015 9.997482 GATTTGACTGTGTTTAGTGAACTAAAA 57.003 29.630 15.38 5.77 46.35 1.52
5388 7016 9.783256 ATTTGACTGTGTTTAGTGAACTAAAAC 57.217 29.630 15.38 14.90 46.35 2.43
5389 7017 7.311364 TGACTGTGTTTAGTGAACTAAAACC 57.689 36.000 15.38 10.29 46.35 3.27
5390 7018 6.879993 TGACTGTGTTTAGTGAACTAAAACCA 59.120 34.615 15.38 13.39 46.35 3.67
5391 7019 7.080353 ACTGTGTTTAGTGAACTAAAACCAC 57.920 36.000 19.70 19.70 46.35 4.16
5392 7020 6.109320 TGTGTTTAGTGAACTAAAACCACG 57.891 37.500 20.40 0.00 46.35 4.94
5393 7021 5.873712 TGTGTTTAGTGAACTAAAACCACGA 59.126 36.000 20.40 12.93 46.35 4.35
5394 7022 6.539464 TGTGTTTAGTGAACTAAAACCACGAT 59.461 34.615 20.40 0.00 46.35 3.73
5395 7023 7.710044 TGTGTTTAGTGAACTAAAACCACGATA 59.290 33.333 20.40 9.51 46.35 2.92
5396 7024 8.550376 GTGTTTAGTGAACTAAAACCACGATAA 58.450 33.333 15.38 0.00 46.35 1.75
5397 7025 8.767085 TGTTTAGTGAACTAAAACCACGATAAG 58.233 33.333 15.38 0.00 46.35 1.73
5398 7026 8.981647 GTTTAGTGAACTAAAACCACGATAAGA 58.018 33.333 15.38 0.00 46.35 2.10
5399 7027 9.545105 TTTAGTGAACTAAAACCACGATAAGAA 57.455 29.630 12.17 0.00 43.23 2.52
5400 7028 9.715121 TTAGTGAACTAAAACCACGATAAGAAT 57.285 29.630 0.37 0.00 35.67 2.40
5401 7029 8.617290 AGTGAACTAAAACCACGATAAGAATT 57.383 30.769 0.00 0.00 36.06 2.17
5402 7030 9.715121 AGTGAACTAAAACCACGATAAGAATTA 57.285 29.630 0.00 0.00 36.06 1.40
5405 7033 9.931210 GAACTAAAACCACGATAAGAATTATGG 57.069 33.333 0.00 0.00 42.35 2.74
5406 7034 9.675464 AACTAAAACCACGATAAGAATTATGGA 57.325 29.630 0.00 0.00 42.35 3.41
5407 7035 9.675464 ACTAAAACCACGATAAGAATTATGGAA 57.325 29.630 0.00 0.00 42.35 3.53
5408 7036 9.931210 CTAAAACCACGATAAGAATTATGGAAC 57.069 33.333 0.00 0.00 42.35 3.62
5409 7037 7.931578 AAACCACGATAAGAATTATGGAACA 57.068 32.000 0.00 0.00 42.35 3.18
5447 7075 5.722021 ATTTGGTTTTCCTATTCTTGCGT 57.278 34.783 0.00 0.00 41.38 5.24
5482 7110 9.014297 CAAGTTTACATAATTCCTGAGTTTCCT 57.986 33.333 0.00 0.00 0.00 3.36
5484 7112 9.892130 AGTTTACATAATTCCTGAGTTTCCTAG 57.108 33.333 0.00 0.00 0.00 3.02
5494 7122 4.322349 CCTGAGTTTCCTAGTCCTCTGTTG 60.322 50.000 0.00 0.00 0.00 3.33
5498 7126 4.902448 AGTTTCCTAGTCCTCTGTTGTCTT 59.098 41.667 0.00 0.00 0.00 3.01
5499 7127 5.011227 AGTTTCCTAGTCCTCTGTTGTCTTC 59.989 44.000 0.00 0.00 0.00 2.87
5500 7128 3.432378 TCCTAGTCCTCTGTTGTCTTCC 58.568 50.000 0.00 0.00 0.00 3.46
5501 7129 3.076182 TCCTAGTCCTCTGTTGTCTTCCT 59.924 47.826 0.00 0.00 0.00 3.36
5502 7130 4.291513 TCCTAGTCCTCTGTTGTCTTCCTA 59.708 45.833 0.00 0.00 0.00 2.94
5510 7138 6.841229 TCCTCTGTTGTCTTCCTATATCACAT 59.159 38.462 0.00 0.00 0.00 3.21
5514 7142 6.280643 TGTTGTCTTCCTATATCACATTCCG 58.719 40.000 0.00 0.00 0.00 4.30
5806 9347 1.267782 TGCGTTTCACAATGTCACACG 60.268 47.619 0.00 0.00 0.00 4.49
5886 9428 5.006649 GGTTGGTTCTTCTTGTTGCATTTTC 59.993 40.000 0.00 0.00 0.00 2.29
5953 9496 6.926272 ACTGAACTCTACAACAGAAATGAGAC 59.074 38.462 0.00 0.00 34.88 3.36
5994 9549 4.762289 AAAGTTGACTAGGAGCTATGGG 57.238 45.455 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.723348 GAAACCCGCGTGGCAGAC 61.723 66.667 10.27 0.00 37.83 3.51
31 32 4.243008 TGAAACCCGCGTGGCAGA 62.243 61.111 10.27 0.00 37.83 4.26
32 33 4.025401 GTGAAACCCGCGTGGCAG 62.025 66.667 10.27 0.00 37.83 4.85
33 34 4.555709 AGTGAAACCCGCGTGGCA 62.556 61.111 10.27 0.00 37.80 4.92
34 35 4.025401 CAGTGAAACCCGCGTGGC 62.025 66.667 10.27 0.00 37.80 5.01
35 36 3.353836 CCAGTGAAACCCGCGTGG 61.354 66.667 8.42 8.42 37.80 4.94
36 37 3.353836 CCCAGTGAAACCCGCGTG 61.354 66.667 4.92 0.00 37.80 5.34
91 92 3.682292 GACCCAACCCTAGGCGCTG 62.682 68.421 7.64 0.00 0.00 5.18
92 93 3.400054 GACCCAACCCTAGGCGCT 61.400 66.667 7.64 0.00 0.00 5.92
93 94 4.832608 CGACCCAACCCTAGGCGC 62.833 72.222 2.05 0.00 0.00 6.53
94 95 4.832608 GCGACCCAACCCTAGGCG 62.833 72.222 2.05 0.24 0.00 5.52
95 96 4.484872 GGCGACCCAACCCTAGGC 62.485 72.222 2.05 0.00 0.00 3.93
107 108 4.131088 GAGTGACTCGGGGGCGAC 62.131 72.222 0.00 0.00 0.00 5.19
108 109 4.671590 TGAGTGACTCGGGGGCGA 62.672 66.667 8.23 0.00 32.35 5.54
109 110 4.135153 CTGAGTGACTCGGGGGCG 62.135 72.222 13.60 0.00 33.57 6.13
114 115 4.135153 CCGCCCTGAGTGACTCGG 62.135 72.222 14.43 14.43 36.69 4.63
115 116 4.135153 CCCGCCCTGAGTGACTCG 62.135 72.222 8.23 2.97 32.35 4.18
116 117 3.775654 CCCCGCCCTGAGTGACTC 61.776 72.222 5.47 5.47 0.00 3.36
130 131 3.631046 CATCCTAGAGCCGCCCCC 61.631 72.222 0.00 0.00 0.00 5.40
131 132 3.631046 CCATCCTAGAGCCGCCCC 61.631 72.222 0.00 0.00 0.00 5.80
132 133 3.631046 CCCATCCTAGAGCCGCCC 61.631 72.222 0.00 0.00 0.00 6.13
133 134 4.321966 GCCCATCCTAGAGCCGCC 62.322 72.222 0.00 0.00 0.00 6.13
134 135 4.321966 GGCCCATCCTAGAGCCGC 62.322 72.222 0.00 0.00 35.30 6.53
136 137 0.109532 GAAAGGCCCATCCTAGAGCC 59.890 60.000 0.00 0.00 46.94 4.70
137 138 0.109532 GGAAAGGCCCATCCTAGAGC 59.890 60.000 15.60 0.00 46.94 4.09
138 139 0.394565 CGGAAAGGCCCATCCTAGAG 59.605 60.000 19.35 3.41 46.94 2.43
139 140 0.326238 ACGGAAAGGCCCATCCTAGA 60.326 55.000 19.35 0.00 46.94 2.43
140 141 1.344763 CTACGGAAAGGCCCATCCTAG 59.655 57.143 19.35 15.37 46.94 3.02
141 142 1.343681 ACTACGGAAAGGCCCATCCTA 60.344 52.381 19.35 11.19 46.94 2.94
143 144 0.179054 GACTACGGAAAGGCCCATCC 60.179 60.000 13.35 13.35 0.00 3.51
144 145 0.179054 GGACTACGGAAAGGCCCATC 60.179 60.000 0.00 0.00 38.95 3.51
145 146 1.912971 GGACTACGGAAAGGCCCAT 59.087 57.895 0.00 0.00 38.95 4.00
146 147 3.395630 GGACTACGGAAAGGCCCA 58.604 61.111 0.00 0.00 38.95 5.36
148 149 2.588439 GGGGACTACGGAAAGGCC 59.412 66.667 0.00 0.00 44.87 5.19
149 150 1.891722 TTCGGGGACTACGGAAAGGC 61.892 60.000 0.00 0.00 0.00 4.35
150 151 0.609662 TTTCGGGGACTACGGAAAGG 59.390 55.000 0.00 0.00 35.59 3.11
151 152 2.685850 ATTTCGGGGACTACGGAAAG 57.314 50.000 0.00 0.00 41.09 2.62
152 153 2.568509 AGAATTTCGGGGACTACGGAAA 59.431 45.455 0.00 0.00 41.70 3.13
153 154 2.093869 CAGAATTTCGGGGACTACGGAA 60.094 50.000 0.00 0.00 32.72 4.30
154 155 1.479323 CAGAATTTCGGGGACTACGGA 59.521 52.381 0.00 0.00 0.00 4.69
155 156 1.479323 TCAGAATTTCGGGGACTACGG 59.521 52.381 0.00 0.00 0.00 4.02
156 157 2.953466 TCAGAATTTCGGGGACTACG 57.047 50.000 0.00 0.00 0.00 3.51
157 158 6.346896 AGTAATTCAGAATTTCGGGGACTAC 58.653 40.000 13.71 3.07 32.38 2.73
158 159 6.555463 AGTAATTCAGAATTTCGGGGACTA 57.445 37.500 13.71 0.00 32.38 2.59
159 160 5.437191 AGTAATTCAGAATTTCGGGGACT 57.563 39.130 13.71 7.22 32.38 3.85
160 161 6.260271 CCTAAGTAATTCAGAATTTCGGGGAC 59.740 42.308 13.71 5.09 32.38 4.46
161 162 6.157297 TCCTAAGTAATTCAGAATTTCGGGGA 59.843 38.462 13.71 13.98 32.38 4.81
162 163 6.354130 TCCTAAGTAATTCAGAATTTCGGGG 58.646 40.000 13.71 12.29 32.38 5.73
163 164 7.859325 TTCCTAAGTAATTCAGAATTTCGGG 57.141 36.000 13.71 12.58 32.38 5.14
183 184 8.961294 TGTCATTTCATCACAAAATTTTTCCT 57.039 26.923 0.00 0.00 0.00 3.36
186 187 9.953697 CCAATGTCATTTCATCACAAAATTTTT 57.046 25.926 0.00 0.00 0.00 1.94
187 188 9.122779 ACCAATGTCATTTCATCACAAAATTTT 57.877 25.926 0.00 0.00 0.00 1.82
188 189 8.561212 CACCAATGTCATTTCATCACAAAATTT 58.439 29.630 0.00 0.00 0.00 1.82
189 190 7.173562 CCACCAATGTCATTTCATCACAAAATT 59.826 33.333 0.00 0.00 0.00 1.82
190 191 6.651643 CCACCAATGTCATTTCATCACAAAAT 59.348 34.615 0.00 0.00 0.00 1.82
191 192 5.990386 CCACCAATGTCATTTCATCACAAAA 59.010 36.000 0.00 0.00 0.00 2.44
192 193 5.303845 TCCACCAATGTCATTTCATCACAAA 59.696 36.000 0.00 0.00 0.00 2.83
193 194 4.831710 TCCACCAATGTCATTTCATCACAA 59.168 37.500 0.00 0.00 0.00 3.33
194 195 4.405548 TCCACCAATGTCATTTCATCACA 58.594 39.130 0.00 0.00 0.00 3.58
195 196 4.676196 GCTCCACCAATGTCATTTCATCAC 60.676 45.833 0.00 0.00 0.00 3.06
196 197 3.444742 GCTCCACCAATGTCATTTCATCA 59.555 43.478 0.00 0.00 0.00 3.07
197 198 3.488047 CGCTCCACCAATGTCATTTCATC 60.488 47.826 0.00 0.00 0.00 2.92
198 199 2.424601 CGCTCCACCAATGTCATTTCAT 59.575 45.455 0.00 0.00 0.00 2.57
199 200 1.811965 CGCTCCACCAATGTCATTTCA 59.188 47.619 0.00 0.00 0.00 2.69
200 201 1.812571 ACGCTCCACCAATGTCATTTC 59.187 47.619 0.00 0.00 0.00 2.17
201 202 1.812571 GACGCTCCACCAATGTCATTT 59.187 47.619 0.00 0.00 0.00 2.32
202 203 1.453155 GACGCTCCACCAATGTCATT 58.547 50.000 0.00 0.00 0.00 2.57
203 204 0.740868 CGACGCTCCACCAATGTCAT 60.741 55.000 0.00 0.00 0.00 3.06
204 205 1.374125 CGACGCTCCACCAATGTCA 60.374 57.895 0.00 0.00 0.00 3.58
205 206 0.460284 ATCGACGCTCCACCAATGTC 60.460 55.000 0.00 0.00 0.00 3.06
206 207 0.740868 CATCGACGCTCCACCAATGT 60.741 55.000 0.00 0.00 0.00 2.71
207 208 2.009108 CATCGACGCTCCACCAATG 58.991 57.895 0.00 0.00 0.00 2.82
208 209 1.815421 GCATCGACGCTCCACCAAT 60.815 57.895 0.00 0.00 0.00 3.16
209 210 1.600511 TAGCATCGACGCTCCACCAA 61.601 55.000 10.29 0.00 42.62 3.67
210 211 1.391933 ATAGCATCGACGCTCCACCA 61.392 55.000 10.29 0.00 42.62 4.17
211 212 0.941463 CATAGCATCGACGCTCCACC 60.941 60.000 10.29 0.00 42.62 4.61
212 213 0.030773 TCATAGCATCGACGCTCCAC 59.969 55.000 10.29 0.00 42.62 4.02
213 214 0.744281 TTCATAGCATCGACGCTCCA 59.256 50.000 10.29 0.00 42.62 3.86
214 215 1.852942 TTTCATAGCATCGACGCTCC 58.147 50.000 10.29 0.00 42.62 4.70
215 216 3.060873 GTCTTTTCATAGCATCGACGCTC 60.061 47.826 10.29 0.00 42.62 5.03
216 217 2.860735 GTCTTTTCATAGCATCGACGCT 59.139 45.455 12.06 12.06 46.26 5.07
217 218 2.860735 AGTCTTTTCATAGCATCGACGC 59.139 45.455 0.00 0.00 0.00 5.19
218 219 3.859961 ACAGTCTTTTCATAGCATCGACG 59.140 43.478 0.00 0.00 0.00 5.12
219 220 5.120830 ACAACAGTCTTTTCATAGCATCGAC 59.879 40.000 0.00 0.00 0.00 4.20
237 238 4.278170 TGCTCCAAATACTTCCAACAACAG 59.722 41.667 0.00 0.00 0.00 3.16
239 240 4.846779 TGCTCCAAATACTTCCAACAAC 57.153 40.909 0.00 0.00 0.00 3.32
244 245 6.855763 AAATCAATGCTCCAAATACTTCCA 57.144 33.333 0.00 0.00 0.00 3.53
246 247 8.538409 AACAAAATCAATGCTCCAAATACTTC 57.462 30.769 0.00 0.00 0.00 3.01
255 256 6.403527 GGGCAAAATAACAAAATCAATGCTCC 60.404 38.462 0.00 0.00 0.00 4.70
262 263 5.306678 AGGTCTGGGCAAAATAACAAAATCA 59.693 36.000 0.00 0.00 0.00 2.57
282 283 5.652014 TGATGAAATAACATTGGTGGAGGTC 59.348 40.000 0.00 0.00 0.00 3.85
307 308 5.898606 TGAAATACGCGCAAAAACAAAAATG 59.101 32.000 5.73 0.00 0.00 2.32
309 310 5.450376 TGAAATACGCGCAAAAACAAAAA 57.550 30.435 5.73 0.00 0.00 1.94
310 311 4.026475 CCTGAAATACGCGCAAAAACAAAA 60.026 37.500 5.73 0.00 0.00 2.44
311 312 3.487574 CCTGAAATACGCGCAAAAACAAA 59.512 39.130 5.73 0.00 0.00 2.83
319 322 3.840890 AATTTTCCTGAAATACGCGCA 57.159 38.095 5.73 0.00 36.96 6.09
320 323 6.806120 ATTTAATTTTCCTGAAATACGCGC 57.194 33.333 5.73 0.00 36.96 6.86
349 352 9.388506 AGTATAACTCACATTTCCTTGATCAAG 57.611 33.333 25.75 25.75 38.14 3.02
553 2110 1.202639 TGCGCTGTCCTTCTCTTTTCA 60.203 47.619 9.73 0.00 0.00 2.69
560 2117 1.609208 AAACATTGCGCTGTCCTTCT 58.391 45.000 9.73 0.00 0.00 2.85
561 2118 2.422276 AAAACATTGCGCTGTCCTTC 57.578 45.000 9.73 0.00 0.00 3.46
637 2199 9.702253 TCTCAAGAGTCCTAATCACTAGTATTT 57.298 33.333 0.00 0.00 0.00 1.40
638 2200 9.349713 CTCTCAAGAGTCCTAATCACTAGTATT 57.650 37.037 0.00 0.00 37.40 1.89
639 2201 8.719596 TCTCTCAAGAGTCCTAATCACTAGTAT 58.280 37.037 6.91 0.00 42.60 2.12
640 2202 8.091952 TCTCTCAAGAGTCCTAATCACTAGTA 57.908 38.462 6.91 0.00 42.60 1.82
641 2203 6.964464 TCTCTCAAGAGTCCTAATCACTAGT 58.036 40.000 6.91 0.00 42.60 2.57
642 2204 7.873719 TTCTCTCAAGAGTCCTAATCACTAG 57.126 40.000 6.91 0.00 42.60 2.57
643 2205 7.201866 GCATTCTCTCAAGAGTCCTAATCACTA 60.202 40.741 6.91 0.00 42.60 2.74
644 2206 6.406849 GCATTCTCTCAAGAGTCCTAATCACT 60.407 42.308 6.91 0.00 42.60 3.41
692 2254 2.310538 CCCCTCTGAAACATAATGGGC 58.689 52.381 0.00 0.00 32.26 5.36
693 2255 2.513738 TCCCCCTCTGAAACATAATGGG 59.486 50.000 0.00 0.00 0.00 4.00
694 2256 3.203040 AGTCCCCCTCTGAAACATAATGG 59.797 47.826 0.00 0.00 0.00 3.16
695 2257 4.455606 GAGTCCCCCTCTGAAACATAATG 58.544 47.826 0.00 0.00 37.22 1.90
696 2258 3.134804 CGAGTCCCCCTCTGAAACATAAT 59.865 47.826 0.00 0.00 38.11 1.28
697 2259 2.500098 CGAGTCCCCCTCTGAAACATAA 59.500 50.000 0.00 0.00 38.11 1.90
698 2260 2.108168 CGAGTCCCCCTCTGAAACATA 58.892 52.381 0.00 0.00 38.11 2.29
699 2261 0.905357 CGAGTCCCCCTCTGAAACAT 59.095 55.000 0.00 0.00 38.11 2.71
700 2262 0.471211 ACGAGTCCCCCTCTGAAACA 60.471 55.000 0.00 0.00 38.11 2.83
701 2263 0.037232 CACGAGTCCCCCTCTGAAAC 60.037 60.000 0.00 0.00 38.11 2.78
702 2264 1.827399 GCACGAGTCCCCCTCTGAAA 61.827 60.000 0.00 0.00 38.11 2.69
703 2265 2.283529 GCACGAGTCCCCCTCTGAA 61.284 63.158 0.00 0.00 38.11 3.02
704 2266 2.680352 GCACGAGTCCCCCTCTGA 60.680 66.667 0.00 0.00 38.11 3.27
705 2267 1.903877 ATTGCACGAGTCCCCCTCTG 61.904 60.000 0.00 0.00 38.11 3.35
706 2268 1.613630 ATTGCACGAGTCCCCCTCT 60.614 57.895 0.00 0.00 38.11 3.69
707 2269 1.450312 CATTGCACGAGTCCCCCTC 60.450 63.158 0.00 0.00 36.80 4.30
708 2270 2.671070 CATTGCACGAGTCCCCCT 59.329 61.111 0.00 0.00 0.00 4.79
709 2271 2.438434 CCATTGCACGAGTCCCCC 60.438 66.667 0.00 0.00 0.00 5.40
710 2272 2.438434 CCCATTGCACGAGTCCCC 60.438 66.667 0.00 0.00 0.00 4.81
711 2273 3.134127 GCCCATTGCACGAGTCCC 61.134 66.667 0.00 0.00 40.77 4.46
712 2274 3.134127 GGCCCATTGCACGAGTCC 61.134 66.667 0.00 0.00 43.89 3.85
713 2275 3.499737 CGGCCCATTGCACGAGTC 61.500 66.667 0.00 0.00 43.89 3.36
714 2276 2.819984 AATCGGCCCATTGCACGAGT 62.820 55.000 0.00 0.00 42.87 4.18
715 2277 2.051804 GAATCGGCCCATTGCACGAG 62.052 60.000 0.00 0.00 42.87 4.18
716 2278 2.045438 AATCGGCCCATTGCACGA 60.045 55.556 0.00 0.00 43.44 4.35
717 2279 2.408835 GAATCGGCCCATTGCACG 59.591 61.111 0.00 0.00 43.89 5.34
718 2280 2.051804 CTCGAATCGGCCCATTGCAC 62.052 60.000 0.00 0.00 43.89 4.57
719 2281 1.819208 CTCGAATCGGCCCATTGCA 60.819 57.895 0.00 0.00 43.89 4.08
720 2282 1.502163 CTCTCGAATCGGCCCATTGC 61.502 60.000 0.00 0.00 40.16 3.56
721 2283 1.502163 GCTCTCGAATCGGCCCATTG 61.502 60.000 0.00 0.00 0.00 2.82
722 2284 1.227674 GCTCTCGAATCGGCCCATT 60.228 57.895 1.76 0.00 0.00 3.16
723 2285 2.423446 GCTCTCGAATCGGCCCAT 59.577 61.111 1.76 0.00 0.00 4.00
724 2286 4.207281 CGCTCTCGAATCGGCCCA 62.207 66.667 1.76 0.00 38.10 5.36
726 2288 4.873129 TGCGCTCTCGAATCGGCC 62.873 66.667 9.73 0.00 38.10 6.13
778 2346 2.966309 CTTTTGGCGTGCTCCCGAC 61.966 63.158 0.00 0.00 36.05 4.79
779 2347 2.668212 CTTTTGGCGTGCTCCCGA 60.668 61.111 0.00 0.00 0.00 5.14
850 2424 0.832135 GGAGACCCCATCATAGCCGA 60.832 60.000 0.00 0.00 34.14 5.54
851 2425 1.674057 GGAGACCCCATCATAGCCG 59.326 63.158 0.00 0.00 34.14 5.52
908 2482 1.342819 GCAGTATCTCCCAATCTCGCT 59.657 52.381 0.00 0.00 0.00 4.93
909 2483 1.342819 AGCAGTATCTCCCAATCTCGC 59.657 52.381 0.00 0.00 0.00 5.03
1162 2747 9.750125 CAACAAGACAAGATGTAGTATATGCTA 57.250 33.333 0.00 0.00 0.00 3.49
1373 2958 4.624882 CAGTTCGAGCTTATGATATCAGGC 59.375 45.833 11.78 14.17 0.00 4.85
1381 2966 4.111375 GAACTCCAGTTCGAGCTTATGA 57.889 45.455 0.00 0.00 43.97 2.15
1575 3160 6.664816 AGCAGAAGACAATTTCCCAATTCATA 59.335 34.615 0.00 0.00 29.41 2.15
1583 3168 3.057245 GGTCAAGCAGAAGACAATTTCCC 60.057 47.826 0.00 0.00 36.50 3.97
1586 3171 3.005155 GCAGGTCAAGCAGAAGACAATTT 59.995 43.478 0.00 0.00 36.50 1.82
1593 3178 0.035881 TCCAGCAGGTCAAGCAGAAG 59.964 55.000 0.00 0.00 35.89 2.85
1604 3189 0.979709 TCCCTGACAGATCCAGCAGG 60.980 60.000 15.04 15.04 45.81 4.85
1622 3207 0.536460 TTCCACCGGAAAGGCTGTTC 60.536 55.000 9.46 0.00 46.52 3.18
1685 3270 3.496130 CACTGAAGGAGTTGCTGTACAAG 59.504 47.826 0.00 0.00 39.50 3.16
1701 3286 3.628513 CCCTCAGGTATCTCTCCACTGAA 60.629 52.174 0.00 0.00 37.69 3.02
1718 3303 0.110486 GGTTCTTGAACAGCCCCTCA 59.890 55.000 14.38 0.00 0.00 3.86
1977 3562 4.034279 GTCGCCTGTAAAACTGTTGTTGTA 59.966 41.667 0.00 0.00 36.39 2.41
2147 3732 6.695713 GCTTTTTCAATAAACCGAGTGAAGTT 59.304 34.615 0.00 0.00 35.11 2.66
2192 3777 3.072915 TCAGCCCAGACAAAGAATTCTGA 59.927 43.478 9.17 0.00 41.65 3.27
2395 3980 3.815401 GCTGTTGTTGTACAGAAGGACAT 59.185 43.478 7.88 0.00 46.72 3.06
2396 3981 3.118408 AGCTGTTGTTGTACAGAAGGACA 60.118 43.478 7.88 0.00 46.72 4.02
2462 4047 8.746530 AGATTATCCTGTAGTTTGACGAACTTA 58.253 33.333 13.34 3.25 46.34 2.24
2543 4128 7.537306 CCAACAAACCTATTATTTGTGAAGTCG 59.463 37.037 4.02 0.00 46.88 4.18
2606 4191 2.122768 TGCCCCAAATTCCAAACTGTT 58.877 42.857 0.00 0.00 0.00 3.16
2681 4266 2.273370 TGTTATGGAGTCGAACTCGC 57.727 50.000 8.33 3.96 45.96 5.03
2839 4424 1.110442 TGGACCACCAAGCTTGTTTG 58.890 50.000 24.35 19.33 43.91 2.93
3133 4718 1.577736 AGGGAGATGACCACCAAGAG 58.422 55.000 0.00 0.00 0.00 2.85
3140 4725 4.349048 CCTAATGATGAAGGGAGATGACCA 59.651 45.833 0.00 0.00 0.00 4.02
3166 4751 7.333528 AGTGCAGTACTCAATCTTTTCAAAA 57.666 32.000 0.00 0.00 33.17 2.44
3257 4842 9.553064 AGATTATTACCAGACAAATCTAAGCTG 57.447 33.333 0.00 0.00 35.64 4.24
3382 4967 5.163550 GGGCTTGGTGTAGAATTCATAAACC 60.164 44.000 8.44 11.62 0.00 3.27
3395 4983 3.080300 CCACTAAATGGGCTTGGTGTA 57.920 47.619 1.85 0.00 45.95 2.90
3404 4992 7.013083 CAGAGATCTGAATTTCCACTAAATGGG 59.987 40.741 0.00 0.00 46.85 4.00
3410 4998 6.014242 ACACACAGAGATCTGAATTTCCACTA 60.014 38.462 16.52 0.00 46.59 2.74
3448 5036 2.163211 GCTCCCTTGCAAGAAGAATCAC 59.837 50.000 28.05 9.54 0.00 3.06
3565 5153 9.025041 TCAGAAAGATACAGAGTATCAGAAACA 57.975 33.333 16.79 0.00 37.82 2.83
3869 5457 4.237724 GCCTGAACAAAACATCCTTTAGC 58.762 43.478 0.00 0.00 0.00 3.09
3972 5560 2.320781 CCGTATCCTCCACTCCAGAAT 58.679 52.381 0.00 0.00 0.00 2.40
3977 5565 2.557490 GTCATACCGTATCCTCCACTCC 59.443 54.545 0.00 0.00 0.00 3.85
3988 5576 4.212716 ACCAAGAGCTATGTCATACCGTA 58.787 43.478 0.00 0.00 0.00 4.02
4078 5666 7.721842 TGTCCTTGTCCAACAGTATATTTTTCA 59.278 33.333 0.00 0.00 0.00 2.69
4097 5685 2.127271 TATGTGGCACCATGTCCTTG 57.873 50.000 16.26 0.00 0.00 3.61
4175 5763 1.135315 CCAACAGTGCCAATGATTCCG 60.135 52.381 0.00 0.00 0.00 4.30
4182 5770 3.828451 GCCATATATCCAACAGTGCCAAT 59.172 43.478 0.00 0.00 0.00 3.16
4196 5784 4.795714 ACATTCATACCTGGGGCCATATAT 59.204 41.667 4.39 0.00 0.00 0.86
4278 5866 1.731720 AGCTCCGAACAGAAGAATGC 58.268 50.000 0.00 0.00 0.00 3.56
4279 5867 2.159599 GCAAGCTCCGAACAGAAGAATG 60.160 50.000 0.00 0.00 0.00 2.67
4286 5874 2.866028 GCAGCAAGCTCCGAACAG 59.134 61.111 0.00 0.00 41.15 3.16
4288 5876 1.639298 AATCGCAGCAAGCTCCGAAC 61.639 55.000 12.46 0.00 39.81 3.95
4289 5877 1.375908 AATCGCAGCAAGCTCCGAA 60.376 52.632 12.46 0.00 39.81 4.30
4290 5878 2.102438 CAATCGCAGCAAGCTCCGA 61.102 57.895 10.79 10.79 40.72 4.55
4291 5879 1.434622 ATCAATCGCAGCAAGCTCCG 61.435 55.000 0.00 0.00 42.61 4.63
4292 5880 0.737219 AATCAATCGCAGCAAGCTCC 59.263 50.000 0.00 0.00 42.61 4.70
4297 5885 3.853831 ACATGAAATCAATCGCAGCAA 57.146 38.095 0.00 0.00 0.00 3.91
4299 5887 4.673761 CACATACATGAAATCAATCGCAGC 59.326 41.667 0.00 0.00 0.00 5.25
4371 5961 8.903820 AGCTAAATGTTAACAAGGAATGGATAC 58.096 33.333 13.23 0.00 0.00 2.24
4389 5980 9.578439 CCCTTTTTCTCTTGAATAAGCTAAATG 57.422 33.333 0.00 0.00 38.80 2.32
4406 5997 6.614694 AACAACCAAACTTACCCTTTTTCT 57.385 33.333 0.00 0.00 0.00 2.52
4413 6004 6.049790 TGCATTAAAACAACCAAACTTACCC 58.950 36.000 0.00 0.00 0.00 3.69
4414 6005 6.759356 ACTGCATTAAAACAACCAAACTTACC 59.241 34.615 0.00 0.00 0.00 2.85
4419 6011 6.648502 CATGACTGCATTAAAACAACCAAAC 58.351 36.000 0.00 0.00 30.68 2.93
4484 6076 5.475564 GCCTTTGTTTCCCATTCTTGTACTA 59.524 40.000 0.00 0.00 0.00 1.82
4493 6085 2.049372 AGCAAGCCTTTGTTTCCCATT 58.951 42.857 0.00 0.00 36.65 3.16
4494 6086 1.720781 AGCAAGCCTTTGTTTCCCAT 58.279 45.000 0.00 0.00 36.65 4.00
4495 6087 2.373335 TAGCAAGCCTTTGTTTCCCA 57.627 45.000 0.00 0.00 36.65 4.37
4496 6088 3.744238 TTTAGCAAGCCTTTGTTTCCC 57.256 42.857 0.00 0.00 36.65 3.97
4497 6089 4.925646 CAGATTTAGCAAGCCTTTGTTTCC 59.074 41.667 0.00 0.00 36.65 3.13
4498 6090 5.532557 ACAGATTTAGCAAGCCTTTGTTTC 58.467 37.500 0.00 0.00 36.65 2.78
4499 6091 5.535753 ACAGATTTAGCAAGCCTTTGTTT 57.464 34.783 0.00 0.00 36.65 2.83
4500 6092 6.648879 TTACAGATTTAGCAAGCCTTTGTT 57.351 33.333 0.00 0.00 36.65 2.83
4501 6093 6.648879 TTTACAGATTTAGCAAGCCTTTGT 57.351 33.333 0.00 0.00 36.65 2.83
4502 6094 8.243426 TGTATTTACAGATTTAGCAAGCCTTTG 58.757 33.333 0.00 0.00 37.36 2.77
4533 6125 1.870402 TGCAACGTATTATGCCCATCG 59.130 47.619 7.44 0.00 41.87 3.84
4534 6126 3.980646 TTGCAACGTATTATGCCCATC 57.019 42.857 7.44 0.00 41.87 3.51
4551 6143 4.963237 TTTTCAATGTGCACGTATTTGC 57.037 36.364 12.96 0.00 43.31 3.68
4552 6144 6.932901 AGATTTTCAATGTGCACGTATTTG 57.067 33.333 12.96 12.78 0.00 2.32
4573 6191 5.289083 TGTGGCTGTATATGCACATTAGA 57.711 39.130 0.00 0.00 0.00 2.10
4596 6214 6.246420 TCAAAAGTATGAGCAGAAAGAAGC 57.754 37.500 0.00 0.00 0.00 3.86
4621 6239 3.674528 ACAATGTCACTCAGTCTCCAG 57.325 47.619 0.00 0.00 0.00 3.86
4625 6243 5.103000 GCGTAATACAATGTCACTCAGTCT 58.897 41.667 0.00 0.00 0.00 3.24
4626 6244 4.862574 TGCGTAATACAATGTCACTCAGTC 59.137 41.667 0.00 0.00 0.00 3.51
4628 6246 4.625311 TGTGCGTAATACAATGTCACTCAG 59.375 41.667 0.00 0.00 0.00 3.35
4630 6248 5.063438 ACATGTGCGTAATACAATGTCACTC 59.937 40.000 0.00 0.00 0.00 3.51
4634 6252 9.140286 AGATATACATGTGCGTAATACAATGTC 57.860 33.333 9.11 0.00 0.00 3.06
4647 6265 4.848357 AGGCCCATTAGATATACATGTGC 58.152 43.478 9.11 0.00 0.00 4.57
4648 6266 7.500227 CCATAAGGCCCATTAGATATACATGTG 59.500 40.741 9.11 0.00 0.00 3.21
4722 6340 0.885879 CCACTCCGTAGCTGTACACA 59.114 55.000 0.00 0.00 0.00 3.72
4842 6460 1.080772 GCACACGGACTCGATCACA 60.081 57.895 0.00 0.00 40.11 3.58
4945 6563 1.867919 CTCTGTCTTGCGTCCTCCGT 61.868 60.000 0.00 0.00 39.32 4.69
5037 6655 3.118112 AGGAACTGCTGGAACCAGATATG 60.118 47.826 22.96 11.60 45.15 1.78
5063 6681 2.969821 ACATCAGGTTGCCAGGTTTA 57.030 45.000 0.00 0.00 0.00 2.01
5089 6707 1.628846 ACCCCTTACTACAACTGCTGG 59.371 52.381 0.00 0.00 0.00 4.85
5108 6726 5.324784 ACTTTTCCTCTGAACCAAACAAC 57.675 39.130 0.00 0.00 0.00 3.32
5151 6771 6.240894 ACAGTGCTATCAAAAGAAATCCTCA 58.759 36.000 0.00 0.00 0.00 3.86
5155 6775 8.976986 AATGAACAGTGCTATCAAAAGAAATC 57.023 30.769 0.00 0.00 0.00 2.17
5165 6785 6.199937 ACCAAATGAATGAACAGTGCTATC 57.800 37.500 0.00 0.00 0.00 2.08
5166 6786 6.209192 TGAACCAAATGAATGAACAGTGCTAT 59.791 34.615 0.00 0.00 0.00 2.97
5376 7004 8.617290 AATTCTTATCGTGGTTTTAGTTCACT 57.383 30.769 0.00 0.00 0.00 3.41
5379 7007 9.931210 CCATAATTCTTATCGTGGTTTTAGTTC 57.069 33.333 0.00 0.00 0.00 3.01
5380 7008 9.675464 TCCATAATTCTTATCGTGGTTTTAGTT 57.325 29.630 0.00 0.00 0.00 2.24
5381 7009 9.675464 TTCCATAATTCTTATCGTGGTTTTAGT 57.325 29.630 0.00 0.00 0.00 2.24
5382 7010 9.931210 GTTCCATAATTCTTATCGTGGTTTTAG 57.069 33.333 0.00 0.00 0.00 1.85
5383 7011 9.451002 TGTTCCATAATTCTTATCGTGGTTTTA 57.549 29.630 0.00 0.00 0.00 1.52
5384 7012 8.343168 TGTTCCATAATTCTTATCGTGGTTTT 57.657 30.769 0.00 0.00 0.00 2.43
5385 7013 7.827236 TCTGTTCCATAATTCTTATCGTGGTTT 59.173 33.333 0.00 0.00 0.00 3.27
5386 7014 7.335627 TCTGTTCCATAATTCTTATCGTGGTT 58.664 34.615 0.00 0.00 0.00 3.67
5387 7015 6.884832 TCTGTTCCATAATTCTTATCGTGGT 58.115 36.000 0.00 0.00 0.00 4.16
5388 7016 7.210174 TCTCTGTTCCATAATTCTTATCGTGG 58.790 38.462 0.00 0.00 0.00 4.94
5389 7017 8.648557 TTCTCTGTTCCATAATTCTTATCGTG 57.351 34.615 0.00 0.00 0.00 4.35
5390 7018 9.319143 CTTTCTCTGTTCCATAATTCTTATCGT 57.681 33.333 0.00 0.00 0.00 3.73
5391 7019 9.319143 ACTTTCTCTGTTCCATAATTCTTATCG 57.681 33.333 0.00 0.00 0.00 2.92
5395 7023 8.826765 TCCTACTTTCTCTGTTCCATAATTCTT 58.173 33.333 0.00 0.00 0.00 2.52
5396 7024 8.380742 TCCTACTTTCTCTGTTCCATAATTCT 57.619 34.615 0.00 0.00 0.00 2.40
5397 7025 9.620259 AATCCTACTTTCTCTGTTCCATAATTC 57.380 33.333 0.00 0.00 0.00 2.17
5398 7026 9.981460 AAATCCTACTTTCTCTGTTCCATAATT 57.019 29.630 0.00 0.00 0.00 1.40
5402 7030 9.981460 AAATAAATCCTACTTTCTCTGTTCCAT 57.019 29.630 0.00 0.00 0.00 3.41
5403 7031 9.231297 CAAATAAATCCTACTTTCTCTGTTCCA 57.769 33.333 0.00 0.00 0.00 3.53
5404 7032 8.678199 CCAAATAAATCCTACTTTCTCTGTTCC 58.322 37.037 0.00 0.00 0.00 3.62
5405 7033 9.232473 ACCAAATAAATCCTACTTTCTCTGTTC 57.768 33.333 0.00 0.00 0.00 3.18
5406 7034 9.588096 AACCAAATAAATCCTACTTTCTCTGTT 57.412 29.630 0.00 0.00 0.00 3.16
5407 7035 9.588096 AAACCAAATAAATCCTACTTTCTCTGT 57.412 29.630 0.00 0.00 0.00 3.41
5410 7038 9.856488 GGAAAACCAAATAAATCCTACTTTCTC 57.144 33.333 0.00 0.00 0.00 2.87
5411 7039 9.601810 AGGAAAACCAAATAAATCCTACTTTCT 57.398 29.630 0.00 0.00 35.59 2.52
5427 7055 4.456566 GGTACGCAAGAATAGGAAAACCAA 59.543 41.667 0.00 0.00 43.62 3.67
5447 7075 7.175293 AGGAATTATGTAAACTTGCGTTTGGTA 59.825 33.333 0.54 0.00 42.94 3.25
5482 7110 7.502895 GTGATATAGGAAGACAACAGAGGACTA 59.497 40.741 0.00 0.00 0.00 2.59
5484 7112 6.096987 TGTGATATAGGAAGACAACAGAGGAC 59.903 42.308 0.00 0.00 0.00 3.85
5494 7122 4.246458 GCCGGAATGTGATATAGGAAGAC 58.754 47.826 5.05 0.00 0.00 3.01
5498 7126 3.582647 ACATGCCGGAATGTGATATAGGA 59.417 43.478 28.01 0.00 39.32 2.94
5499 7127 3.942829 ACATGCCGGAATGTGATATAGG 58.057 45.455 28.01 0.00 39.32 2.57
5500 7128 5.106555 GGAAACATGCCGGAATGTGATATAG 60.107 44.000 29.20 0.00 39.89 1.31
5501 7129 4.759693 GGAAACATGCCGGAATGTGATATA 59.240 41.667 29.20 0.00 39.89 0.86
5502 7130 3.569701 GGAAACATGCCGGAATGTGATAT 59.430 43.478 29.20 15.18 39.89 1.63
5510 7138 3.963129 AGAAATAGGAAACATGCCGGAA 58.037 40.909 5.05 0.00 0.00 4.30
5514 7142 3.877508 AGCGTAGAAATAGGAAACATGCC 59.122 43.478 0.00 0.00 0.00 4.40
5806 9347 2.266055 CCGTCCAGGCACCTCTTC 59.734 66.667 0.00 0.00 0.00 2.87
5974 9529 3.964031 CTCCCATAGCTCCTAGTCAACTT 59.036 47.826 0.00 0.00 0.00 2.66
6062 9617 2.964925 GGTGACGCAGCGACAACA 60.965 61.111 26.94 15.37 38.84 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.