Multiple sequence alignment - TraesCS7B01G109900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G109900 chr7B 100.000 2117 0 0 1 2117 125509131 125511247 0.000000e+00 3910
1 TraesCS7B01G109900 chr7B 98.755 482 6 0 1636 2117 125519105 125519586 0.000000e+00 857
2 TraesCS7B01G109900 chr7B 98.755 482 6 0 1636 2117 231231947 231231466 0.000000e+00 857
3 TraesCS7B01G109900 chr7B 98.548 482 7 0 1636 2117 134193945 134194426 0.000000e+00 852
4 TraesCS7B01G109900 chr5D 97.434 1130 22 7 1 1128 6201384 6200260 0.000000e+00 1919
5 TraesCS7B01G109900 chr5D 96.901 1065 30 3 64 1128 329162138 329163199 0.000000e+00 1781
6 TraesCS7B01G109900 chr5D 97.633 507 10 2 1129 1635 6237197 6236693 0.000000e+00 869
7 TraesCS7B01G109900 chr5D 97.041 507 13 2 1129 1635 503329613 503330117 0.000000e+00 852
8 TraesCS7B01G109900 chr3D 97.176 1133 24 5 1 1128 21904520 21905649 0.000000e+00 1908
9 TraesCS7B01G109900 chr1D 96.994 1131 29 4 1 1128 254497892 254499020 0.000000e+00 1895
10 TraesCS7B01G109900 chr1D 95.221 1130 48 6 1 1128 244484152 244483027 0.000000e+00 1783
11 TraesCS7B01G109900 chr1D 97.228 505 12 2 1129 1633 290505870 290506372 0.000000e+00 854
12 TraesCS7B01G109900 chr1D 96.450 507 16 2 1129 1635 254475700 254476204 0.000000e+00 835
13 TraesCS7B01G109900 chr6B 96.894 1127 29 5 5 1128 22425843 22426966 0.000000e+00 1882
14 TraesCS7B01G109900 chr1A 96.011 1128 39 5 1 1128 168450667 168449546 0.000000e+00 1829
15 TraesCS7B01G109900 chr1A 97.830 507 9 2 1129 1635 554449243 554448739 0.000000e+00 874
16 TraesCS7B01G109900 chr4D 95.929 1130 39 7 1 1128 19916391 19917515 0.000000e+00 1825
17 TraesCS7B01G109900 chr7A 93.794 1128 65 5 1 1127 352194127 352193004 0.000000e+00 1690
18 TraesCS7B01G109900 chr7A 87.619 105 8 4 13 112 138641942 138641838 1.330000e-22 117
19 TraesCS7B01G109900 chr3B 97.830 507 9 2 1129 1635 201491705 201492209 0.000000e+00 874
20 TraesCS7B01G109900 chr3B 98.758 483 6 0 1635 2117 438241797 438242279 0.000000e+00 859
21 TraesCS7B01G109900 chr3B 98.758 483 6 0 1635 2117 610758742 610759224 0.000000e+00 859
22 TraesCS7B01G109900 chr3B 98.551 483 7 0 1635 2117 438250387 438250869 0.000000e+00 854
23 TraesCS7B01G109900 chr3B 98.551 483 7 0 1635 2117 683364172 683363690 0.000000e+00 854
24 TraesCS7B01G109900 chr2D 97.830 507 9 2 1129 1635 33931005 33930501 0.000000e+00 874
25 TraesCS7B01G109900 chr7D 97.239 507 12 2 1129 1635 231564998 231565502 0.000000e+00 857
26 TraesCS7B01G109900 chr2B 98.755 482 6 0 1636 2117 459184271 459183790 0.000000e+00 857
27 TraesCS7B01G109900 chr2B 98.551 483 7 0 1635 2117 459192440 459191958 0.000000e+00 854
28 TraesCS7B01G109900 chr4A 96.647 507 13 3 1129 1635 309375687 309375185 0.000000e+00 839


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G109900 chr7B 125509131 125511247 2116 False 3910 3910 100.000 1 2117 1 chr7B.!!$F1 2116
1 TraesCS7B01G109900 chr5D 6200260 6201384 1124 True 1919 1919 97.434 1 1128 1 chr5D.!!$R1 1127
2 TraesCS7B01G109900 chr5D 329162138 329163199 1061 False 1781 1781 96.901 64 1128 1 chr5D.!!$F1 1064
3 TraesCS7B01G109900 chr5D 6236693 6237197 504 True 869 869 97.633 1129 1635 1 chr5D.!!$R2 506
4 TraesCS7B01G109900 chr5D 503329613 503330117 504 False 852 852 97.041 1129 1635 1 chr5D.!!$F2 506
5 TraesCS7B01G109900 chr3D 21904520 21905649 1129 False 1908 1908 97.176 1 1128 1 chr3D.!!$F1 1127
6 TraesCS7B01G109900 chr1D 254497892 254499020 1128 False 1895 1895 96.994 1 1128 1 chr1D.!!$F2 1127
7 TraesCS7B01G109900 chr1D 244483027 244484152 1125 True 1783 1783 95.221 1 1128 1 chr1D.!!$R1 1127
8 TraesCS7B01G109900 chr1D 290505870 290506372 502 False 854 854 97.228 1129 1633 1 chr1D.!!$F3 504
9 TraesCS7B01G109900 chr1D 254475700 254476204 504 False 835 835 96.450 1129 1635 1 chr1D.!!$F1 506
10 TraesCS7B01G109900 chr6B 22425843 22426966 1123 False 1882 1882 96.894 5 1128 1 chr6B.!!$F1 1123
11 TraesCS7B01G109900 chr1A 168449546 168450667 1121 True 1829 1829 96.011 1 1128 1 chr1A.!!$R1 1127
12 TraesCS7B01G109900 chr1A 554448739 554449243 504 True 874 874 97.830 1129 1635 1 chr1A.!!$R2 506
13 TraesCS7B01G109900 chr4D 19916391 19917515 1124 False 1825 1825 95.929 1 1128 1 chr4D.!!$F1 1127
14 TraesCS7B01G109900 chr7A 352193004 352194127 1123 True 1690 1690 93.794 1 1127 1 chr7A.!!$R2 1126
15 TraesCS7B01G109900 chr3B 201491705 201492209 504 False 874 874 97.830 1129 1635 1 chr3B.!!$F1 506
16 TraesCS7B01G109900 chr2D 33930501 33931005 504 True 874 874 97.830 1129 1635 1 chr2D.!!$R1 506
17 TraesCS7B01G109900 chr7D 231564998 231565502 504 False 857 857 97.239 1129 1635 1 chr7D.!!$F1 506
18 TraesCS7B01G109900 chr4A 309375185 309375687 502 True 839 839 96.647 1129 1635 1 chr4A.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 3.952323 ACTTTCCAGTAGTATCGCTGCTA 59.048 43.478 0.0 0.0 38.1 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1782 1.610522 GCAGCTTGGTCATCACAAACT 59.389 47.619 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.952323 ACTTTCCAGTAGTATCGCTGCTA 59.048 43.478 0.00 0.00 38.10 3.49
121 128 4.764050 TCGAATTATTTGGGCCTACTCA 57.236 40.909 4.53 0.00 0.00 3.41
137 144 5.221722 GCCTACTCATTATCAGTGGGATCAA 60.222 44.000 2.36 0.00 43.58 2.57
337 346 4.289672 AGTTGTTGGATGGTTAGGACATCT 59.710 41.667 5.52 0.00 43.25 2.90
457 466 4.056050 TGTTAGAGCAGACGTTCCTTTTC 58.944 43.478 0.00 0.00 0.00 2.29
597 606 6.163476 GCGTTCTCAATTAGGGGAAATTTTT 58.837 36.000 0.00 0.00 0.00 1.94
972 981 6.433093 ACAAATGAATAGGGTGTGGAAGTTAC 59.567 38.462 0.00 0.00 0.00 2.50
997 1006 8.798402 ACAATTGTAAATAAACCAGGATCGAAA 58.202 29.630 9.97 0.00 0.00 3.46
1186 1197 2.034878 GAATCCCAATCCCCTGCTTTC 58.965 52.381 0.00 0.00 0.00 2.62
1276 1287 4.229582 AGCCAATTAGATAACCAACCCTGA 59.770 41.667 0.00 0.00 0.00 3.86
1344 1355 4.278170 TCGGATGCAAGTTTGAAAGATTGT 59.722 37.500 0.00 0.00 0.00 2.71
1349 1360 4.202141 TGCAAGTTTGAAAGATTGTCCTGG 60.202 41.667 0.00 0.00 0.00 4.45
1424 1435 6.004574 AGGAAGGTACTGAACTTTTGGATTC 58.995 40.000 0.00 0.00 40.86 2.52
1508 1519 9.121658 CTCATAAGTTCCTGTATGAGTACTACA 57.878 37.037 11.00 0.00 44.51 2.74
1549 1560 9.787435 TGTGACTGGTAGTAAAACATCTATTTT 57.213 29.630 0.00 0.00 35.89 1.82
1589 1600 3.380320 TCGATCCTCAACTATTTCTCGCA 59.620 43.478 0.00 0.00 0.00 5.10
1635 1646 2.821991 GCATCTATAACTGCCTCCGT 57.178 50.000 0.00 0.00 32.15 4.69
1636 1647 2.408050 GCATCTATAACTGCCTCCGTG 58.592 52.381 0.00 0.00 32.15 4.94
1637 1648 2.035961 GCATCTATAACTGCCTCCGTGA 59.964 50.000 0.00 0.00 32.15 4.35
1638 1649 3.492656 GCATCTATAACTGCCTCCGTGAA 60.493 47.826 0.00 0.00 32.15 3.18
1639 1650 4.693283 CATCTATAACTGCCTCCGTGAAA 58.307 43.478 0.00 0.00 0.00 2.69
1640 1651 4.386867 TCTATAACTGCCTCCGTGAAAG 57.613 45.455 0.00 0.00 0.00 2.62
1641 1652 2.403252 ATAACTGCCTCCGTGAAAGG 57.597 50.000 0.00 0.00 36.95 3.11
1642 1653 1.344065 TAACTGCCTCCGTGAAAGGA 58.656 50.000 0.00 0.00 35.83 3.36
1643 1654 0.250338 AACTGCCTCCGTGAAAGGAC 60.250 55.000 0.00 0.00 35.83 3.85
1644 1655 1.371183 CTGCCTCCGTGAAAGGACA 59.629 57.895 0.00 0.00 35.83 4.02
1645 1656 0.036010 CTGCCTCCGTGAAAGGACAT 60.036 55.000 0.00 0.00 35.83 3.06
1646 1657 0.321564 TGCCTCCGTGAAAGGACATG 60.322 55.000 0.00 0.00 35.83 3.21
1647 1658 0.321653 GCCTCCGTGAAAGGACATGT 60.322 55.000 0.00 0.00 35.83 3.21
1648 1659 1.442769 CCTCCGTGAAAGGACATGTG 58.557 55.000 1.15 0.00 35.83 3.21
1649 1660 1.442769 CTCCGTGAAAGGACATGTGG 58.557 55.000 1.15 0.00 36.14 4.17
1650 1661 0.762418 TCCGTGAAAGGACATGTGGT 59.238 50.000 1.15 0.00 34.92 4.16
1651 1662 0.874390 CCGTGAAAGGACATGTGGTG 59.126 55.000 1.15 0.00 0.00 4.17
1652 1663 0.238289 CGTGAAAGGACATGTGGTGC 59.762 55.000 1.15 0.00 38.27 5.01
1653 1664 0.598065 GTGAAAGGACATGTGGTGCC 59.402 55.000 1.15 0.00 38.89 5.01
1654 1665 0.539438 TGAAAGGACATGTGGTGCCC 60.539 55.000 1.15 0.00 38.89 5.36
1655 1666 1.228862 AAAGGACATGTGGTGCCCC 60.229 57.895 1.15 0.00 38.89 5.80
1656 1667 2.730129 AAAGGACATGTGGTGCCCCC 62.730 60.000 1.15 0.00 38.89 5.40
1657 1668 3.978193 GGACATGTGGTGCCCCCA 61.978 66.667 1.15 0.00 42.51 4.96
1664 1675 4.298261 TGGTGCCCCCATGTGTGG 62.298 66.667 0.00 0.00 45.61 4.17
1665 1676 4.299796 GGTGCCCCCATGTGTGGT 62.300 66.667 0.00 0.00 44.48 4.16
1666 1677 2.203625 GTGCCCCCATGTGTGGTT 60.204 61.111 0.00 0.00 44.48 3.67
1667 1678 1.836604 GTGCCCCCATGTGTGGTTT 60.837 57.895 0.00 0.00 44.48 3.27
1668 1679 1.074926 TGCCCCCATGTGTGGTTTT 60.075 52.632 0.00 0.00 44.48 2.43
1669 1680 1.370810 GCCCCCATGTGTGGTTTTG 59.629 57.895 0.00 0.00 44.48 2.44
1670 1681 2.056985 CCCCCATGTGTGGTTTTGG 58.943 57.895 0.00 0.00 44.48 3.28
1671 1682 0.762461 CCCCCATGTGTGGTTTTGGT 60.762 55.000 0.00 0.00 44.48 3.67
1672 1683 1.481428 CCCCCATGTGTGGTTTTGGTA 60.481 52.381 0.00 0.00 44.48 3.25
1673 1684 2.320781 CCCCATGTGTGGTTTTGGTAA 58.679 47.619 0.00 0.00 44.48 2.85
1674 1685 2.903135 CCCCATGTGTGGTTTTGGTAAT 59.097 45.455 0.00 0.00 44.48 1.89
1675 1686 3.326297 CCCCATGTGTGGTTTTGGTAATT 59.674 43.478 0.00 0.00 44.48 1.40
1676 1687 4.314121 CCCATGTGTGGTTTTGGTAATTG 58.686 43.478 0.00 0.00 44.48 2.32
1677 1688 4.039730 CCCATGTGTGGTTTTGGTAATTGA 59.960 41.667 0.00 0.00 44.48 2.57
1678 1689 5.279910 CCCATGTGTGGTTTTGGTAATTGAT 60.280 40.000 0.00 0.00 44.48 2.57
1679 1690 5.638657 CCATGTGTGGTTTTGGTAATTGATG 59.361 40.000 0.00 0.00 40.83 3.07
1680 1691 6.453943 CATGTGTGGTTTTGGTAATTGATGA 58.546 36.000 0.00 0.00 0.00 2.92
1681 1692 5.837437 TGTGTGGTTTTGGTAATTGATGAC 58.163 37.500 0.00 0.00 0.00 3.06
1682 1693 5.360999 TGTGTGGTTTTGGTAATTGATGACA 59.639 36.000 0.00 0.00 0.00 3.58
1683 1694 6.127338 TGTGTGGTTTTGGTAATTGATGACAA 60.127 34.615 0.00 0.00 40.42 3.18
1684 1695 6.928492 GTGTGGTTTTGGTAATTGATGACAAT 59.072 34.615 0.00 0.00 46.99 2.71
1685 1696 7.116233 GTGTGGTTTTGGTAATTGATGACAATC 59.884 37.037 0.00 0.00 44.67 2.67
1686 1697 7.015098 TGTGGTTTTGGTAATTGATGACAATCT 59.985 33.333 0.00 0.00 44.67 2.40
1687 1698 7.542130 GTGGTTTTGGTAATTGATGACAATCTC 59.458 37.037 0.00 0.00 44.67 2.75
1688 1699 7.451255 TGGTTTTGGTAATTGATGACAATCTCT 59.549 33.333 0.00 0.00 44.67 3.10
1689 1700 8.956426 GGTTTTGGTAATTGATGACAATCTCTA 58.044 33.333 0.00 0.00 44.67 2.43
1692 1703 8.681486 TTGGTAATTGATGACAATCTCTATGG 57.319 34.615 0.00 0.00 44.67 2.74
1693 1704 8.033178 TGGTAATTGATGACAATCTCTATGGA 57.967 34.615 0.00 0.00 44.67 3.41
1694 1705 7.933577 TGGTAATTGATGACAATCTCTATGGAC 59.066 37.037 0.00 0.00 44.67 4.02
1695 1706 8.153550 GGTAATTGATGACAATCTCTATGGACT 58.846 37.037 0.00 0.00 44.67 3.85
1699 1710 9.722184 ATTGATGACAATCTCTATGGACTAATG 57.278 33.333 0.00 0.00 42.20 1.90
1700 1711 7.674120 TGATGACAATCTCTATGGACTAATGG 58.326 38.462 0.00 0.00 33.61 3.16
1701 1712 7.290948 TGATGACAATCTCTATGGACTAATGGT 59.709 37.037 0.00 0.00 33.61 3.55
1702 1713 7.437713 TGACAATCTCTATGGACTAATGGTT 57.562 36.000 0.00 0.00 0.00 3.67
1703 1714 7.275183 TGACAATCTCTATGGACTAATGGTTG 58.725 38.462 0.00 0.00 0.00 3.77
1704 1715 6.058183 ACAATCTCTATGGACTAATGGTTGC 58.942 40.000 0.00 0.00 0.00 4.17
1705 1716 4.689612 TCTCTATGGACTAATGGTTGCC 57.310 45.455 0.00 0.00 0.00 4.52
1706 1717 4.298626 TCTCTATGGACTAATGGTTGCCT 58.701 43.478 0.00 0.00 0.00 4.75
1707 1718 4.721776 TCTCTATGGACTAATGGTTGCCTT 59.278 41.667 0.00 0.00 0.00 4.35
1708 1719 4.780815 TCTATGGACTAATGGTTGCCTTG 58.219 43.478 0.00 0.00 0.00 3.61
1709 1720 3.737559 ATGGACTAATGGTTGCCTTGA 57.262 42.857 0.00 0.00 0.00 3.02
1710 1721 3.071874 TGGACTAATGGTTGCCTTGAG 57.928 47.619 0.00 0.00 0.00 3.02
1711 1722 2.375174 TGGACTAATGGTTGCCTTGAGT 59.625 45.455 0.00 0.00 0.00 3.41
1712 1723 3.181434 TGGACTAATGGTTGCCTTGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
1713 1724 4.042311 TGGACTAATGGTTGCCTTGAGTTA 59.958 41.667 0.00 0.00 0.00 2.24
1714 1725 5.193679 GGACTAATGGTTGCCTTGAGTTAT 58.806 41.667 0.00 0.00 0.00 1.89
1715 1726 6.069905 TGGACTAATGGTTGCCTTGAGTTATA 60.070 38.462 0.00 0.00 0.00 0.98
1716 1727 6.998673 GGACTAATGGTTGCCTTGAGTTATAT 59.001 38.462 0.00 0.00 0.00 0.86
1717 1728 7.502561 GGACTAATGGTTGCCTTGAGTTATATT 59.497 37.037 0.00 0.00 0.00 1.28
1718 1729 8.823220 ACTAATGGTTGCCTTGAGTTATATTT 57.177 30.769 0.00 0.00 0.00 1.40
1719 1730 8.686334 ACTAATGGTTGCCTTGAGTTATATTTG 58.314 33.333 0.00 0.00 0.00 2.32
1720 1731 7.716799 AATGGTTGCCTTGAGTTATATTTGA 57.283 32.000 0.00 0.00 0.00 2.69
1721 1732 7.716799 ATGGTTGCCTTGAGTTATATTTGAA 57.283 32.000 0.00 0.00 0.00 2.69
1722 1733 7.156876 TGGTTGCCTTGAGTTATATTTGAAG 57.843 36.000 0.00 0.00 0.00 3.02
1723 1734 6.152661 TGGTTGCCTTGAGTTATATTTGAAGG 59.847 38.462 0.00 0.00 34.30 3.46
1724 1735 6.405842 GGTTGCCTTGAGTTATATTTGAAGGG 60.406 42.308 0.00 0.00 32.21 3.95
1725 1736 5.826643 TGCCTTGAGTTATATTTGAAGGGT 58.173 37.500 0.00 0.00 32.21 4.34
1726 1737 6.252995 TGCCTTGAGTTATATTTGAAGGGTT 58.747 36.000 0.00 0.00 32.21 4.11
1727 1738 6.723977 TGCCTTGAGTTATATTTGAAGGGTTT 59.276 34.615 0.00 0.00 32.21 3.27
1728 1739 7.234577 TGCCTTGAGTTATATTTGAAGGGTTTT 59.765 33.333 0.00 0.00 32.21 2.43
1729 1740 7.759886 GCCTTGAGTTATATTTGAAGGGTTTTC 59.240 37.037 0.00 0.00 32.21 2.29
1730 1741 8.251026 CCTTGAGTTATATTTGAAGGGTTTTCC 58.749 37.037 0.00 0.00 39.75 3.13
1745 1756 4.820897 GGTTTTCCCATAGGCTTTTCTTG 58.179 43.478 0.00 0.00 0.00 3.02
1746 1757 4.322725 GGTTTTCCCATAGGCTTTTCTTGG 60.323 45.833 0.00 0.00 0.00 3.61
1747 1758 4.396357 TTTCCCATAGGCTTTTCTTGGA 57.604 40.909 0.00 0.00 0.00 3.53
1748 1759 3.652057 TCCCATAGGCTTTTCTTGGAG 57.348 47.619 0.00 0.00 0.00 3.86
1749 1760 2.919602 TCCCATAGGCTTTTCTTGGAGT 59.080 45.455 0.00 0.00 0.00 3.85
1750 1761 3.054361 TCCCATAGGCTTTTCTTGGAGTC 60.054 47.826 0.00 0.00 0.00 3.36
1751 1762 3.282885 CCATAGGCTTTTCTTGGAGTCC 58.717 50.000 0.73 0.73 0.00 3.85
1752 1763 3.308402 CCATAGGCTTTTCTTGGAGTCCA 60.308 47.826 8.12 8.12 0.00 4.02
1753 1764 4.530875 CATAGGCTTTTCTTGGAGTCCAT 58.469 43.478 14.00 0.00 31.53 3.41
1754 1765 3.532641 AGGCTTTTCTTGGAGTCCATT 57.467 42.857 14.00 0.00 31.53 3.16
1755 1766 3.849527 AGGCTTTTCTTGGAGTCCATTT 58.150 40.909 14.00 0.00 31.53 2.32
1756 1767 3.575687 AGGCTTTTCTTGGAGTCCATTTG 59.424 43.478 14.00 6.84 31.53 2.32
1757 1768 3.321968 GGCTTTTCTTGGAGTCCATTTGT 59.678 43.478 14.00 0.00 31.53 2.83
1758 1769 4.202253 GGCTTTTCTTGGAGTCCATTTGTT 60.202 41.667 14.00 0.00 31.53 2.83
1759 1770 4.746611 GCTTTTCTTGGAGTCCATTTGTTG 59.253 41.667 14.00 4.15 31.53 3.33
1761 1772 3.593442 TCTTGGAGTCCATTTGTTGGT 57.407 42.857 14.00 0.00 46.52 3.67
1762 1773 3.909732 TCTTGGAGTCCATTTGTTGGTT 58.090 40.909 14.00 0.00 46.52 3.67
1763 1774 4.285863 TCTTGGAGTCCATTTGTTGGTTT 58.714 39.130 14.00 0.00 46.52 3.27
1764 1775 4.340950 TCTTGGAGTCCATTTGTTGGTTTC 59.659 41.667 14.00 0.00 46.52 2.78
1765 1776 3.636679 TGGAGTCCATTTGTTGGTTTCA 58.363 40.909 8.12 0.00 46.52 2.69
1766 1777 4.026744 TGGAGTCCATTTGTTGGTTTCAA 58.973 39.130 8.12 0.00 46.52 2.69
1767 1778 4.653341 TGGAGTCCATTTGTTGGTTTCAAT 59.347 37.500 8.12 0.00 46.52 2.57
1768 1779 5.835819 TGGAGTCCATTTGTTGGTTTCAATA 59.164 36.000 8.12 0.00 46.52 1.90
1769 1780 6.325028 TGGAGTCCATTTGTTGGTTTCAATAA 59.675 34.615 8.12 0.00 46.52 1.40
1770 1781 6.868339 GGAGTCCATTTGTTGGTTTCAATAAG 59.132 38.462 3.60 0.00 46.52 1.73
1771 1782 7.255801 GGAGTCCATTTGTTGGTTTCAATAAGA 60.256 37.037 3.60 0.00 46.52 2.10
1772 1783 7.661040 AGTCCATTTGTTGGTTTCAATAAGAG 58.339 34.615 0.00 0.00 46.52 2.85
1773 1784 7.287696 AGTCCATTTGTTGGTTTCAATAAGAGT 59.712 33.333 0.00 0.00 46.52 3.24
1774 1785 7.926018 GTCCATTTGTTGGTTTCAATAAGAGTT 59.074 33.333 0.00 0.00 46.52 3.01
1775 1786 8.482128 TCCATTTGTTGGTTTCAATAAGAGTTT 58.518 29.630 0.00 0.00 46.52 2.66
1776 1787 8.550376 CCATTTGTTGGTTTCAATAAGAGTTTG 58.450 33.333 0.00 0.00 40.99 2.93
1777 1788 9.097257 CATTTGTTGGTTTCAATAAGAGTTTGT 57.903 29.630 0.00 0.00 35.84 2.83
1778 1789 8.472683 TTTGTTGGTTTCAATAAGAGTTTGTG 57.527 30.769 0.00 0.00 35.84 3.33
1779 1790 7.397892 TGTTGGTTTCAATAAGAGTTTGTGA 57.602 32.000 0.00 0.00 35.10 3.58
1780 1791 8.006298 TGTTGGTTTCAATAAGAGTTTGTGAT 57.994 30.769 0.00 0.00 35.10 3.06
1781 1792 7.920151 TGTTGGTTTCAATAAGAGTTTGTGATG 59.080 33.333 0.00 0.00 35.10 3.07
1782 1793 7.815840 TGGTTTCAATAAGAGTTTGTGATGA 57.184 32.000 0.00 0.00 0.00 2.92
1783 1794 7.648142 TGGTTTCAATAAGAGTTTGTGATGAC 58.352 34.615 0.00 0.00 0.00 3.06
1784 1795 7.084486 GGTTTCAATAAGAGTTTGTGATGACC 58.916 38.462 0.00 0.00 0.00 4.02
1785 1796 7.255451 GGTTTCAATAAGAGTTTGTGATGACCA 60.255 37.037 0.00 0.00 0.00 4.02
1786 1797 7.815840 TTCAATAAGAGTTTGTGATGACCAA 57.184 32.000 0.00 0.00 0.00 3.67
1787 1798 7.439157 TCAATAAGAGTTTGTGATGACCAAG 57.561 36.000 0.00 0.00 0.00 3.61
1788 1799 5.886960 ATAAGAGTTTGTGATGACCAAGC 57.113 39.130 0.00 0.00 0.00 4.01
1789 1800 3.498774 AGAGTTTGTGATGACCAAGCT 57.501 42.857 0.00 0.00 36.28 3.74
1790 1801 3.144506 AGAGTTTGTGATGACCAAGCTG 58.855 45.455 0.00 0.00 34.13 4.24
1791 1802 1.610522 AGTTTGTGATGACCAAGCTGC 59.389 47.619 0.00 0.00 32.96 5.25
1792 1803 1.610522 GTTTGTGATGACCAAGCTGCT 59.389 47.619 0.00 0.00 0.00 4.24
1793 1804 2.813754 GTTTGTGATGACCAAGCTGCTA 59.186 45.455 0.90 0.00 0.00 3.49
1794 1805 3.354948 TTGTGATGACCAAGCTGCTAT 57.645 42.857 0.90 0.00 0.00 2.97
1795 1806 3.354948 TGTGATGACCAAGCTGCTATT 57.645 42.857 0.90 0.00 0.00 1.73
1796 1807 4.486125 TGTGATGACCAAGCTGCTATTA 57.514 40.909 0.90 0.00 0.00 0.98
1797 1808 4.842574 TGTGATGACCAAGCTGCTATTAA 58.157 39.130 0.90 0.00 0.00 1.40
1798 1809 4.877823 TGTGATGACCAAGCTGCTATTAAG 59.122 41.667 0.90 0.00 0.00 1.85
1799 1810 4.274459 GTGATGACCAAGCTGCTATTAAGG 59.726 45.833 0.90 3.09 0.00 2.69
1800 1811 4.164030 TGATGACCAAGCTGCTATTAAGGA 59.836 41.667 0.90 0.00 0.00 3.36
1801 1812 4.568072 TGACCAAGCTGCTATTAAGGAA 57.432 40.909 0.90 0.00 0.00 3.36
1802 1813 5.116084 TGACCAAGCTGCTATTAAGGAAT 57.884 39.130 0.90 0.00 0.00 3.01
1803 1814 5.509498 TGACCAAGCTGCTATTAAGGAATT 58.491 37.500 0.90 0.00 0.00 2.17
1804 1815 6.658849 TGACCAAGCTGCTATTAAGGAATTA 58.341 36.000 0.90 0.00 0.00 1.40
1805 1816 7.290061 TGACCAAGCTGCTATTAAGGAATTAT 58.710 34.615 0.90 0.00 0.00 1.28
1806 1817 7.445402 TGACCAAGCTGCTATTAAGGAATTATC 59.555 37.037 0.90 0.00 0.00 1.75
1807 1818 6.717084 ACCAAGCTGCTATTAAGGAATTATCC 59.283 38.462 0.90 0.00 46.98 2.59
1829 1840 6.764308 CCAAAGATTGGTCATATGAGTGTT 57.236 37.500 5.42 0.00 45.93 3.32
1830 1841 6.558009 CCAAAGATTGGTCATATGAGTGTTG 58.442 40.000 5.42 4.35 45.93 3.33
1831 1842 6.375174 CCAAAGATTGGTCATATGAGTGTTGA 59.625 38.462 5.42 0.00 45.93 3.18
1832 1843 7.414873 CCAAAGATTGGTCATATGAGTGTTGAG 60.415 40.741 5.42 0.00 45.93 3.02
1833 1844 5.121811 AGATTGGTCATATGAGTGTTGAGC 58.878 41.667 5.42 0.00 38.14 4.26
1834 1845 4.558226 TTGGTCATATGAGTGTTGAGCT 57.442 40.909 5.42 0.00 38.39 4.09
1835 1846 4.558226 TGGTCATATGAGTGTTGAGCTT 57.442 40.909 5.42 0.00 38.39 3.74
1836 1847 5.675684 TGGTCATATGAGTGTTGAGCTTA 57.324 39.130 5.42 0.00 38.39 3.09
1837 1848 6.239217 TGGTCATATGAGTGTTGAGCTTAT 57.761 37.500 5.42 0.00 38.39 1.73
1838 1849 6.653020 TGGTCATATGAGTGTTGAGCTTATT 58.347 36.000 5.42 0.00 38.39 1.40
1839 1850 6.539826 TGGTCATATGAGTGTTGAGCTTATTG 59.460 38.462 5.42 0.00 38.39 1.90
1840 1851 6.425504 GTCATATGAGTGTTGAGCTTATTGC 58.574 40.000 5.42 0.00 43.29 3.56
1841 1852 6.037500 GTCATATGAGTGTTGAGCTTATTGCA 59.962 38.462 5.42 0.00 45.94 4.08
1842 1853 6.598850 TCATATGAGTGTTGAGCTTATTGCAA 59.401 34.615 0.00 0.00 45.94 4.08
1843 1854 4.754372 TGAGTGTTGAGCTTATTGCAAG 57.246 40.909 4.94 0.00 45.94 4.01
1844 1855 3.058016 TGAGTGTTGAGCTTATTGCAAGC 60.058 43.478 4.94 2.46 45.94 4.01
1845 1856 2.886523 AGTGTTGAGCTTATTGCAAGCA 59.113 40.909 11.29 0.00 45.30 3.91
1846 1857 3.508793 AGTGTTGAGCTTATTGCAAGCAT 59.491 39.130 11.29 0.00 45.30 3.79
1847 1858 3.611113 GTGTTGAGCTTATTGCAAGCATG 59.389 43.478 11.29 2.60 45.30 4.06
1848 1859 3.256383 TGTTGAGCTTATTGCAAGCATGT 59.744 39.130 11.29 0.00 45.30 3.21
1849 1860 3.770263 TGAGCTTATTGCAAGCATGTC 57.230 42.857 11.29 3.24 45.30 3.06
1850 1861 3.349927 TGAGCTTATTGCAAGCATGTCT 58.650 40.909 11.29 0.66 45.30 3.41
1851 1862 3.760151 TGAGCTTATTGCAAGCATGTCTT 59.240 39.130 11.29 0.00 45.30 3.01
1862 1873 4.762956 AAGCATGTCTTGAAGAAGAAGC 57.237 40.909 0.00 0.00 40.00 3.86
1863 1874 4.018484 AGCATGTCTTGAAGAAGAAGCT 57.982 40.909 0.00 1.73 40.00 3.74
1864 1875 4.396522 AGCATGTCTTGAAGAAGAAGCTT 58.603 39.130 0.00 0.00 40.00 3.74
1865 1876 4.215827 AGCATGTCTTGAAGAAGAAGCTTG 59.784 41.667 2.10 0.00 40.00 4.01
1866 1877 4.023365 GCATGTCTTGAAGAAGAAGCTTGT 60.023 41.667 2.10 0.00 40.00 3.16
1867 1878 5.450171 CATGTCTTGAAGAAGAAGCTTGTG 58.550 41.667 2.10 0.00 40.00 3.33
1868 1879 4.517285 TGTCTTGAAGAAGAAGCTTGTGT 58.483 39.130 2.10 0.00 40.00 3.72
1869 1880 4.333649 TGTCTTGAAGAAGAAGCTTGTGTG 59.666 41.667 2.10 0.00 40.00 3.82
1870 1881 4.572389 GTCTTGAAGAAGAAGCTTGTGTGA 59.428 41.667 2.10 0.00 40.00 3.58
1871 1882 5.238214 GTCTTGAAGAAGAAGCTTGTGTGAT 59.762 40.000 2.10 0.00 40.00 3.06
1872 1883 5.468072 TCTTGAAGAAGAAGCTTGTGTGATC 59.532 40.000 2.10 0.00 35.14 2.92
1873 1884 4.707105 TGAAGAAGAAGCTTGTGTGATCA 58.293 39.130 2.10 0.47 0.00 2.92
1874 1885 5.311265 TGAAGAAGAAGCTTGTGTGATCAT 58.689 37.500 2.10 0.00 0.00 2.45
1875 1886 5.766670 TGAAGAAGAAGCTTGTGTGATCATT 59.233 36.000 2.10 0.00 0.00 2.57
1876 1887 5.876612 AGAAGAAGCTTGTGTGATCATTC 57.123 39.130 2.10 0.00 0.00 2.67
1877 1888 5.311265 AGAAGAAGCTTGTGTGATCATTCA 58.689 37.500 2.10 0.00 0.00 2.57
1878 1889 5.944599 AGAAGAAGCTTGTGTGATCATTCAT 59.055 36.000 2.10 0.00 33.56 2.57
1879 1890 5.562506 AGAAGCTTGTGTGATCATTCATG 57.437 39.130 2.10 5.31 33.56 3.07
1880 1891 5.008331 AGAAGCTTGTGTGATCATTCATGT 58.992 37.500 2.10 0.00 33.56 3.21
1881 1892 5.475909 AGAAGCTTGTGTGATCATTCATGTT 59.524 36.000 2.10 0.00 33.56 2.71
1882 1893 5.717078 AGCTTGTGTGATCATTCATGTTT 57.283 34.783 0.00 0.00 33.56 2.83
1883 1894 6.822667 AGCTTGTGTGATCATTCATGTTTA 57.177 33.333 0.00 0.00 33.56 2.01
1884 1895 6.615088 AGCTTGTGTGATCATTCATGTTTAC 58.385 36.000 0.00 0.00 33.56 2.01
1885 1896 5.801947 GCTTGTGTGATCATTCATGTTTACC 59.198 40.000 0.00 0.00 33.56 2.85
1886 1897 6.349611 GCTTGTGTGATCATTCATGTTTACCT 60.350 38.462 0.00 0.00 33.56 3.08
1887 1898 7.523293 TTGTGTGATCATTCATGTTTACCTT 57.477 32.000 0.00 0.00 33.56 3.50
1888 1899 7.144722 TGTGTGATCATTCATGTTTACCTTC 57.855 36.000 0.00 0.00 33.56 3.46
1889 1900 6.714356 TGTGTGATCATTCATGTTTACCTTCA 59.286 34.615 0.00 0.00 33.56 3.02
1890 1901 7.230309 TGTGTGATCATTCATGTTTACCTTCAA 59.770 33.333 0.00 0.00 33.56 2.69
1891 1902 7.752239 GTGTGATCATTCATGTTTACCTTCAAG 59.248 37.037 0.00 0.00 33.56 3.02
1892 1903 7.665145 TGTGATCATTCATGTTTACCTTCAAGA 59.335 33.333 0.00 0.00 33.56 3.02
1893 1904 7.965107 GTGATCATTCATGTTTACCTTCAAGAC 59.035 37.037 0.00 0.00 33.56 3.01
1894 1905 7.665145 TGATCATTCATGTTTACCTTCAAGACA 59.335 33.333 0.00 0.00 0.00 3.41
1895 1906 8.585471 ATCATTCATGTTTACCTTCAAGACAT 57.415 30.769 0.00 0.00 0.00 3.06
1896 1907 8.044060 TCATTCATGTTTACCTTCAAGACATC 57.956 34.615 0.00 0.00 0.00 3.06
1897 1908 7.665145 TCATTCATGTTTACCTTCAAGACATCA 59.335 33.333 0.00 0.00 0.00 3.07
1898 1909 8.464404 CATTCATGTTTACCTTCAAGACATCAT 58.536 33.333 0.00 0.00 0.00 2.45
1899 1910 7.615582 TCATGTTTACCTTCAAGACATCATC 57.384 36.000 0.00 0.00 0.00 2.92
1900 1911 6.599244 TCATGTTTACCTTCAAGACATCATCC 59.401 38.462 0.00 0.00 0.00 3.51
1901 1912 5.875224 TGTTTACCTTCAAGACATCATCCA 58.125 37.500 0.00 0.00 0.00 3.41
1902 1913 6.303054 TGTTTACCTTCAAGACATCATCCAA 58.697 36.000 0.00 0.00 0.00 3.53
1903 1914 6.775142 TGTTTACCTTCAAGACATCATCCAAA 59.225 34.615 0.00 0.00 0.00 3.28
1904 1915 7.451255 TGTTTACCTTCAAGACATCATCCAAAT 59.549 33.333 0.00 0.00 0.00 2.32
1905 1916 5.909621 ACCTTCAAGACATCATCCAAATG 57.090 39.130 0.00 0.00 0.00 2.32
1906 1917 5.573219 ACCTTCAAGACATCATCCAAATGA 58.427 37.500 0.00 0.00 45.73 2.57
1907 1918 6.012113 ACCTTCAAGACATCATCCAAATGAA 58.988 36.000 0.00 0.00 44.85 2.57
1908 1919 6.152323 ACCTTCAAGACATCATCCAAATGAAG 59.848 38.462 0.00 0.00 44.85 3.02
1909 1920 6.376299 CCTTCAAGACATCATCCAAATGAAGA 59.624 38.462 12.36 0.00 44.85 2.87
1910 1921 6.997239 TCAAGACATCATCCAAATGAAGAG 57.003 37.500 0.00 0.00 44.85 2.85
1911 1922 6.714278 TCAAGACATCATCCAAATGAAGAGA 58.286 36.000 0.00 0.00 44.85 3.10
1912 1923 6.822170 TCAAGACATCATCCAAATGAAGAGAG 59.178 38.462 0.00 0.00 44.85 3.20
1913 1924 6.310764 AGACATCATCCAAATGAAGAGAGT 57.689 37.500 0.00 0.00 44.85 3.24
1914 1925 6.719301 AGACATCATCCAAATGAAGAGAGTT 58.281 36.000 0.00 0.00 44.85 3.01
1915 1926 6.598457 AGACATCATCCAAATGAAGAGAGTTG 59.402 38.462 0.00 0.00 44.85 3.16
1916 1927 5.125097 ACATCATCCAAATGAAGAGAGTTGC 59.875 40.000 0.00 0.00 44.85 4.17
1917 1928 4.654915 TCATCCAAATGAAGAGAGTTGCA 58.345 39.130 0.00 0.00 38.97 4.08
1918 1929 5.072055 TCATCCAAATGAAGAGAGTTGCAA 58.928 37.500 0.00 0.00 38.97 4.08
1919 1930 5.535783 TCATCCAAATGAAGAGAGTTGCAAA 59.464 36.000 0.00 0.00 38.97 3.68
1920 1931 5.443185 TCCAAATGAAGAGAGTTGCAAAG 57.557 39.130 0.00 0.00 0.00 2.77
1921 1932 5.132502 TCCAAATGAAGAGAGTTGCAAAGA 58.867 37.500 0.00 0.00 0.00 2.52
1922 1933 5.771666 TCCAAATGAAGAGAGTTGCAAAGAT 59.228 36.000 0.00 0.00 0.00 2.40
1923 1934 6.266103 TCCAAATGAAGAGAGTTGCAAAGATT 59.734 34.615 0.00 0.00 0.00 2.40
1924 1935 6.585322 CCAAATGAAGAGAGTTGCAAAGATTC 59.415 38.462 0.00 2.59 0.00 2.52
1925 1936 6.889301 AATGAAGAGAGTTGCAAAGATTCA 57.111 33.333 0.00 8.36 0.00 2.57
1926 1937 6.889301 ATGAAGAGAGTTGCAAAGATTCAA 57.111 33.333 0.00 0.00 0.00 2.69
1927 1938 6.309712 TGAAGAGAGTTGCAAAGATTCAAG 57.690 37.500 0.00 0.00 0.00 3.02
1928 1939 5.240183 TGAAGAGAGTTGCAAAGATTCAAGG 59.760 40.000 0.00 0.00 0.00 3.61
1929 1940 4.723309 AGAGAGTTGCAAAGATTCAAGGT 58.277 39.130 0.00 0.00 0.00 3.50
1930 1941 5.136105 AGAGAGTTGCAAAGATTCAAGGTT 58.864 37.500 0.00 0.00 0.00 3.50
1931 1942 5.009410 AGAGAGTTGCAAAGATTCAAGGTTG 59.991 40.000 0.00 0.00 0.00 3.77
1932 1943 4.889409 AGAGTTGCAAAGATTCAAGGTTGA 59.111 37.500 0.00 0.00 34.92 3.18
1933 1944 5.537674 AGAGTTGCAAAGATTCAAGGTTGAT 59.462 36.000 0.00 0.00 37.00 2.57
1934 1945 5.776744 AGTTGCAAAGATTCAAGGTTGATC 58.223 37.500 0.00 0.00 37.00 2.92
1935 1946 5.302568 AGTTGCAAAGATTCAAGGTTGATCA 59.697 36.000 0.00 0.00 37.00 2.92
1936 1947 5.787953 TGCAAAGATTCAAGGTTGATCAA 57.212 34.783 3.38 3.38 37.00 2.57
1937 1948 5.775686 TGCAAAGATTCAAGGTTGATCAAG 58.224 37.500 8.80 0.00 37.00 3.02
1938 1949 5.535783 TGCAAAGATTCAAGGTTGATCAAGA 59.464 36.000 8.80 0.00 37.00 3.02
1939 1950 5.860716 GCAAAGATTCAAGGTTGATCAAGAC 59.139 40.000 8.80 5.15 37.00 3.01
1940 1951 6.294397 GCAAAGATTCAAGGTTGATCAAGACT 60.294 38.462 8.80 7.58 37.00 3.24
1941 1952 7.094634 GCAAAGATTCAAGGTTGATCAAGACTA 60.095 37.037 8.80 0.00 37.00 2.59
1942 1953 8.786898 CAAAGATTCAAGGTTGATCAAGACTAA 58.213 33.333 8.80 3.43 37.00 2.24
1943 1954 8.558973 AAGATTCAAGGTTGATCAAGACTAAG 57.441 34.615 8.80 7.14 37.00 2.18
1944 1955 7.684529 AGATTCAAGGTTGATCAAGACTAAGT 58.315 34.615 8.80 0.21 37.00 2.24
1945 1956 7.821846 AGATTCAAGGTTGATCAAGACTAAGTC 59.178 37.037 8.80 8.50 37.00 3.01
1946 1957 6.419484 TCAAGGTTGATCAAGACTAAGTCA 57.581 37.500 8.80 0.00 31.32 3.41
1947 1958 6.826668 TCAAGGTTGATCAAGACTAAGTCAA 58.173 36.000 8.80 0.00 31.32 3.18
1948 1959 6.931281 TCAAGGTTGATCAAGACTAAGTCAAG 59.069 38.462 8.80 0.00 31.32 3.02
1949 1960 6.672266 AGGTTGATCAAGACTAAGTCAAGA 57.328 37.500 8.80 0.00 34.60 3.02
1950 1961 6.696411 AGGTTGATCAAGACTAAGTCAAGAG 58.304 40.000 8.80 0.00 34.60 2.85
1951 1962 6.268847 AGGTTGATCAAGACTAAGTCAAGAGT 59.731 38.462 8.80 0.00 34.60 3.24
1952 1963 6.367422 GGTTGATCAAGACTAAGTCAAGAGTG 59.633 42.308 8.80 0.00 34.60 3.51
1953 1964 6.901081 TGATCAAGACTAAGTCAAGAGTGA 57.099 37.500 0.00 0.00 34.60 3.41
1954 1965 7.290110 TGATCAAGACTAAGTCAAGAGTGAA 57.710 36.000 0.00 0.00 34.87 3.18
1955 1966 7.901029 TGATCAAGACTAAGTCAAGAGTGAAT 58.099 34.615 0.00 0.00 34.87 2.57
1956 1967 8.031864 TGATCAAGACTAAGTCAAGAGTGAATC 58.968 37.037 0.00 0.00 34.87 2.52
1957 1968 7.290110 TCAAGACTAAGTCAAGAGTGAATCA 57.710 36.000 0.00 0.00 34.87 2.57
1958 1969 7.726216 TCAAGACTAAGTCAAGAGTGAATCAA 58.274 34.615 0.00 0.00 34.87 2.57
1959 1970 7.869937 TCAAGACTAAGTCAAGAGTGAATCAAG 59.130 37.037 0.00 0.00 34.87 3.02
1960 1971 7.296628 AGACTAAGTCAAGAGTGAATCAAGT 57.703 36.000 0.00 0.00 34.87 3.16
1961 1972 7.731054 AGACTAAGTCAAGAGTGAATCAAGTT 58.269 34.615 0.00 0.00 34.87 2.66
1962 1973 7.655328 AGACTAAGTCAAGAGTGAATCAAGTTG 59.345 37.037 0.00 0.00 34.87 3.16
1963 1974 7.500992 ACTAAGTCAAGAGTGAATCAAGTTGA 58.499 34.615 8.27 8.27 34.87 3.18
1964 1975 8.153550 ACTAAGTCAAGAGTGAATCAAGTTGAT 58.846 33.333 12.75 12.75 39.09 2.57
1965 1976 7.432350 AAGTCAAGAGTGAATCAAGTTGATC 57.568 36.000 18.52 12.26 35.76 2.92
1966 1977 6.528321 AGTCAAGAGTGAATCAAGTTGATCA 58.472 36.000 18.52 14.43 35.76 2.92
1967 1978 6.994496 AGTCAAGAGTGAATCAAGTTGATCAA 59.006 34.615 18.52 3.38 35.76 2.57
1968 1979 7.041508 AGTCAAGAGTGAATCAAGTTGATCAAC 60.042 37.037 27.69 27.69 35.76 3.18
1969 1980 7.041508 GTCAAGAGTGAATCAAGTTGATCAACT 60.042 37.037 31.06 31.06 43.68 3.16
1979 1990 3.609103 GTTGATCAACTCACAAAGCGT 57.391 42.857 27.66 0.00 38.25 5.07
1980 1991 4.725556 GTTGATCAACTCACAAAGCGTA 57.274 40.909 27.66 0.00 38.25 4.42
1981 1992 4.702392 GTTGATCAACTCACAAAGCGTAG 58.298 43.478 27.66 0.00 38.25 3.51
1982 1993 4.251543 TGATCAACTCACAAAGCGTAGA 57.748 40.909 0.00 0.00 0.00 2.59
1983 1994 4.627058 TGATCAACTCACAAAGCGTAGAA 58.373 39.130 0.00 0.00 0.00 2.10
1984 1995 4.686091 TGATCAACTCACAAAGCGTAGAAG 59.314 41.667 0.00 0.00 0.00 2.85
1985 1996 4.316205 TCAACTCACAAAGCGTAGAAGA 57.684 40.909 0.00 0.00 0.00 2.87
1986 1997 4.883083 TCAACTCACAAAGCGTAGAAGAT 58.117 39.130 0.00 0.00 0.00 2.40
1987 1998 4.686091 TCAACTCACAAAGCGTAGAAGATG 59.314 41.667 0.00 0.00 0.00 2.90
1988 1999 4.258702 ACTCACAAAGCGTAGAAGATGT 57.741 40.909 0.00 0.00 0.00 3.06
1989 2000 5.386958 ACTCACAAAGCGTAGAAGATGTA 57.613 39.130 0.00 0.00 0.00 2.29
1990 2001 5.162075 ACTCACAAAGCGTAGAAGATGTAC 58.838 41.667 0.00 0.00 0.00 2.90
1991 2002 4.491676 TCACAAAGCGTAGAAGATGTACC 58.508 43.478 0.00 0.00 0.00 3.34
1992 2003 3.303495 CACAAAGCGTAGAAGATGTACCG 59.697 47.826 0.00 0.00 0.00 4.02
1993 2004 3.192001 ACAAAGCGTAGAAGATGTACCGA 59.808 43.478 0.00 0.00 0.00 4.69
1994 2005 3.694535 AAGCGTAGAAGATGTACCGAG 57.305 47.619 0.00 0.00 0.00 4.63
1995 2006 2.915349 AGCGTAGAAGATGTACCGAGA 58.085 47.619 0.00 0.00 0.00 4.04
1996 2007 2.873472 AGCGTAGAAGATGTACCGAGAG 59.127 50.000 0.00 0.00 0.00 3.20
2020 2031 4.330250 GATCAAGTGATCCCATGGTATGG 58.670 47.826 11.73 0.79 43.85 2.74
2021 2032 4.202503 GATCAAGTGATCCCATGGTATGGT 60.203 45.833 11.73 0.00 43.85 3.55
2022 2033 5.013079 GATCAAGTGATCCCATGGTATGGTA 59.987 44.000 11.73 0.00 43.85 3.25
2023 2034 6.465751 GATCAAGTGATCCCATGGTATGGTAA 60.466 42.308 11.73 0.00 43.85 2.85
2024 2035 8.225403 GATCAAGTGATCCCATGGTATGGTAAG 61.225 44.444 11.73 0.00 43.85 2.34
2031 2042 4.836125 CCATGGTATGGTAAGCATTGTC 57.164 45.455 2.57 0.00 45.54 3.18
2032 2043 3.569701 CCATGGTATGGTAAGCATTGTCC 59.430 47.826 2.57 0.00 45.54 4.02
2033 2044 4.206375 CATGGTATGGTAAGCATTGTCCA 58.794 43.478 0.00 0.00 35.46 4.02
2034 2045 4.518278 TGGTATGGTAAGCATTGTCCAT 57.482 40.909 0.00 0.00 43.06 3.41
2035 2046 4.865905 TGGTATGGTAAGCATTGTCCATT 58.134 39.130 0.00 0.00 41.65 3.16
2036 2047 4.644234 TGGTATGGTAAGCATTGTCCATTG 59.356 41.667 0.00 0.00 41.65 2.82
2037 2048 3.806625 ATGGTAAGCATTGTCCATTGC 57.193 42.857 6.13 6.13 39.70 3.56
2038 2049 2.523245 TGGTAAGCATTGTCCATTGCA 58.477 42.857 14.45 0.00 39.42 4.08
2039 2050 2.230992 TGGTAAGCATTGTCCATTGCAC 59.769 45.455 14.45 6.53 39.42 4.57
2040 2051 2.493278 GGTAAGCATTGTCCATTGCACT 59.507 45.455 14.45 5.78 39.42 4.40
2041 2052 3.056607 GGTAAGCATTGTCCATTGCACTT 60.057 43.478 14.45 5.73 39.42 3.16
2042 2053 3.756933 AAGCATTGTCCATTGCACTTT 57.243 38.095 14.45 0.80 39.42 2.66
2043 2054 3.308438 AGCATTGTCCATTGCACTTTC 57.692 42.857 14.45 0.00 39.42 2.62
2044 2055 2.895404 AGCATTGTCCATTGCACTTTCT 59.105 40.909 14.45 0.00 39.42 2.52
2045 2056 2.991190 GCATTGTCCATTGCACTTTCTG 59.009 45.455 8.78 0.00 37.56 3.02
2046 2057 3.553508 GCATTGTCCATTGCACTTTCTGT 60.554 43.478 8.78 0.00 37.56 3.41
2047 2058 4.321156 GCATTGTCCATTGCACTTTCTGTA 60.321 41.667 8.78 0.00 37.56 2.74
2048 2059 4.829064 TTGTCCATTGCACTTTCTGTAC 57.171 40.909 0.00 0.00 0.00 2.90
2049 2060 4.085357 TGTCCATTGCACTTTCTGTACT 57.915 40.909 0.00 0.00 0.00 2.73
2050 2061 5.222079 TGTCCATTGCACTTTCTGTACTA 57.778 39.130 0.00 0.00 0.00 1.82
2051 2062 5.616270 TGTCCATTGCACTTTCTGTACTAA 58.384 37.500 0.00 0.00 0.00 2.24
2052 2063 5.468746 TGTCCATTGCACTTTCTGTACTAAC 59.531 40.000 0.00 0.00 0.00 2.34
2053 2064 5.001232 TCCATTGCACTTTCTGTACTAACC 58.999 41.667 0.00 0.00 0.00 2.85
2054 2065 4.156008 CCATTGCACTTTCTGTACTAACCC 59.844 45.833 0.00 0.00 0.00 4.11
2055 2066 4.425180 TTGCACTTTCTGTACTAACCCA 57.575 40.909 0.00 0.00 0.00 4.51
2056 2067 4.634012 TGCACTTTCTGTACTAACCCAT 57.366 40.909 0.00 0.00 0.00 4.00
2057 2068 4.323417 TGCACTTTCTGTACTAACCCATG 58.677 43.478 0.00 0.00 0.00 3.66
2058 2069 3.689649 GCACTTTCTGTACTAACCCATGG 59.310 47.826 4.14 4.14 0.00 3.66
2059 2070 4.806286 GCACTTTCTGTACTAACCCATGGT 60.806 45.833 11.73 0.00 37.65 3.55
2060 2071 4.935808 CACTTTCTGTACTAACCCATGGTC 59.064 45.833 11.73 0.00 33.12 4.02
2061 2072 4.844655 ACTTTCTGTACTAACCCATGGTCT 59.155 41.667 11.73 0.00 33.12 3.85
2062 2073 6.021030 ACTTTCTGTACTAACCCATGGTCTA 58.979 40.000 11.73 0.23 33.12 2.59
2063 2074 6.672657 ACTTTCTGTACTAACCCATGGTCTAT 59.327 38.462 11.73 0.00 33.12 1.98
2064 2075 6.479972 TTCTGTACTAACCCATGGTCTATG 57.520 41.667 11.73 0.00 33.12 2.23
2065 2076 5.525484 TCTGTACTAACCCATGGTCTATGT 58.475 41.667 11.73 5.52 33.12 2.29
2066 2077 5.362717 TCTGTACTAACCCATGGTCTATGTG 59.637 44.000 11.73 0.00 33.12 3.21
2067 2078 5.274015 TGTACTAACCCATGGTCTATGTGA 58.726 41.667 11.73 0.00 33.12 3.58
2068 2079 5.362717 TGTACTAACCCATGGTCTATGTGAG 59.637 44.000 11.73 5.97 33.12 3.51
2069 2080 4.620723 ACTAACCCATGGTCTATGTGAGA 58.379 43.478 11.73 0.00 33.12 3.27
2070 2081 4.651503 ACTAACCCATGGTCTATGTGAGAG 59.348 45.833 11.73 2.80 33.12 3.20
2071 2082 3.121929 ACCCATGGTCTATGTGAGAGT 57.878 47.619 11.73 0.00 33.72 3.24
2072 2083 3.454858 ACCCATGGTCTATGTGAGAGTT 58.545 45.455 11.73 0.00 33.72 3.01
2073 2084 3.198635 ACCCATGGTCTATGTGAGAGTTG 59.801 47.826 11.73 0.00 33.72 3.16
2074 2085 3.198635 CCCATGGTCTATGTGAGAGTTGT 59.801 47.826 11.73 0.00 33.72 3.32
2075 2086 4.405680 CCCATGGTCTATGTGAGAGTTGTA 59.594 45.833 11.73 0.00 33.72 2.41
2076 2087 5.070981 CCCATGGTCTATGTGAGAGTTGTAT 59.929 44.000 11.73 0.00 33.72 2.29
2077 2088 5.987953 CCATGGTCTATGTGAGAGTTGTATG 59.012 44.000 2.57 0.00 33.72 2.39
2078 2089 6.407412 CCATGGTCTATGTGAGAGTTGTATGT 60.407 42.308 2.57 0.00 33.72 2.29
2079 2090 5.965922 TGGTCTATGTGAGAGTTGTATGTG 58.034 41.667 0.00 0.00 33.72 3.21
2080 2091 5.105351 TGGTCTATGTGAGAGTTGTATGTGG 60.105 44.000 0.00 0.00 33.72 4.17
2081 2092 5.352284 GTCTATGTGAGAGTTGTATGTGGG 58.648 45.833 0.00 0.00 33.72 4.61
2082 2093 2.472695 TGTGAGAGTTGTATGTGGGC 57.527 50.000 0.00 0.00 0.00 5.36
2083 2094 1.977854 TGTGAGAGTTGTATGTGGGCT 59.022 47.619 0.00 0.00 0.00 5.19
2084 2095 2.371841 TGTGAGAGTTGTATGTGGGCTT 59.628 45.455 0.00 0.00 0.00 4.35
2085 2096 3.580895 TGTGAGAGTTGTATGTGGGCTTA 59.419 43.478 0.00 0.00 0.00 3.09
2086 2097 4.184629 GTGAGAGTTGTATGTGGGCTTAG 58.815 47.826 0.00 0.00 0.00 2.18
2087 2098 3.197766 TGAGAGTTGTATGTGGGCTTAGG 59.802 47.826 0.00 0.00 0.00 2.69
2088 2099 3.182152 AGAGTTGTATGTGGGCTTAGGT 58.818 45.455 0.00 0.00 0.00 3.08
2089 2100 4.359105 AGAGTTGTATGTGGGCTTAGGTA 58.641 43.478 0.00 0.00 0.00 3.08
2090 2101 4.161754 AGAGTTGTATGTGGGCTTAGGTAC 59.838 45.833 0.00 0.00 0.00 3.34
2091 2102 3.118884 AGTTGTATGTGGGCTTAGGTACG 60.119 47.826 0.00 0.00 0.00 3.67
2092 2103 2.459644 TGTATGTGGGCTTAGGTACGT 58.540 47.619 0.00 0.00 0.00 3.57
2093 2104 3.630168 TGTATGTGGGCTTAGGTACGTA 58.370 45.455 0.00 0.00 0.00 3.57
2094 2105 4.217510 TGTATGTGGGCTTAGGTACGTAT 58.782 43.478 0.00 0.00 0.00 3.06
2095 2106 4.279169 TGTATGTGGGCTTAGGTACGTATC 59.721 45.833 0.00 0.00 0.00 2.24
2096 2107 2.034124 TGTGGGCTTAGGTACGTATCC 58.966 52.381 1.21 4.22 0.00 2.59
2097 2108 2.034124 GTGGGCTTAGGTACGTATCCA 58.966 52.381 1.21 10.64 0.00 3.41
2098 2109 2.631545 GTGGGCTTAGGTACGTATCCAT 59.368 50.000 1.21 0.00 0.00 3.41
2099 2110 2.631062 TGGGCTTAGGTACGTATCCATG 59.369 50.000 1.21 0.00 0.00 3.66
2100 2111 2.028385 GGGCTTAGGTACGTATCCATGG 60.028 54.545 4.97 4.97 0.00 3.66
2101 2112 2.028385 GGCTTAGGTACGTATCCATGGG 60.028 54.545 13.02 0.00 0.00 4.00
2102 2113 2.612221 GCTTAGGTACGTATCCATGGGC 60.612 54.545 13.02 1.75 0.00 5.36
2103 2114 2.688902 TAGGTACGTATCCATGGGCT 57.311 50.000 13.02 2.14 0.00 5.19
2104 2115 1.802553 AGGTACGTATCCATGGGCTT 58.197 50.000 13.02 0.00 0.00 4.35
2105 2116 1.416401 AGGTACGTATCCATGGGCTTG 59.584 52.381 13.02 2.58 0.00 4.01
2106 2117 1.226746 GTACGTATCCATGGGCTTGC 58.773 55.000 13.02 0.09 0.00 4.01
2107 2118 0.249699 TACGTATCCATGGGCTTGCG 60.250 55.000 13.02 14.45 0.00 4.85
2108 2119 1.523711 CGTATCCATGGGCTTGCGT 60.524 57.895 13.02 0.00 0.00 5.24
2109 2120 1.498865 CGTATCCATGGGCTTGCGTC 61.499 60.000 13.02 0.00 0.00 5.19
2110 2121 0.463654 GTATCCATGGGCTTGCGTCA 60.464 55.000 13.02 0.00 0.00 4.35
2111 2122 0.254462 TATCCATGGGCTTGCGTCAA 59.746 50.000 13.02 0.00 0.00 3.18
2112 2123 1.033746 ATCCATGGGCTTGCGTCAAG 61.034 55.000 13.02 13.18 43.57 3.02
2113 2124 1.675310 CCATGGGCTTGCGTCAAGA 60.675 57.895 19.38 3.69 43.42 3.02
2114 2125 1.651240 CCATGGGCTTGCGTCAAGAG 61.651 60.000 19.38 6.61 43.42 2.85
2115 2126 1.377725 ATGGGCTTGCGTCAAGAGG 60.378 57.895 19.38 0.02 43.42 3.69
2116 2127 1.841302 ATGGGCTTGCGTCAAGAGGA 61.841 55.000 19.38 5.85 43.42 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 128 7.639062 AAGTATCCTTGATCCCACTGATAAT 57.361 36.000 0.00 0.00 32.41 1.28
264 273 4.017591 TGCTCTGAATAATCCCCCTTTTGA 60.018 41.667 0.00 0.00 0.00 2.69
457 466 6.703607 ACACTATATTTGGATTCTGCTCTTCG 59.296 38.462 0.00 0.00 0.00 3.79
572 581 2.018542 TTCCCCTAATTGAGAACGCG 57.981 50.000 3.53 3.53 0.00 6.01
597 606 4.020039 TCAAAGTAGCCCGGTCTAATTCAA 60.020 41.667 5.60 0.00 0.00 2.69
958 967 6.394025 TTTACAATTGTAACTTCCACACCC 57.606 37.500 26.72 0.00 39.92 4.61
972 981 9.072294 GTTTCGATCCTGGTTTATTTACAATTG 57.928 33.333 3.24 3.24 0.00 2.32
997 1006 6.354130 ACGTATAAACCAATGCTTCCATAGT 58.646 36.000 0.00 0.00 0.00 2.12
1186 1197 7.010552 CACCGAGGAATAGAGACTTTACAAATG 59.989 40.741 0.00 0.00 0.00 2.32
1276 1287 3.458857 AGGGAGAGATGAAGACAATGCAT 59.541 43.478 0.00 0.00 0.00 3.96
1379 1390 9.331282 CTTCCTACAAATTAGTGAATTAGGAGG 57.669 37.037 0.00 0.00 38.05 4.30
1506 1517 5.470098 CAGTCACAAGCTTTATGTTAGGTGT 59.530 40.000 0.00 0.00 0.00 4.16
1508 1519 5.003804 CCAGTCACAAGCTTTATGTTAGGT 58.996 41.667 0.00 0.00 0.00 3.08
1549 1560 9.751542 GAGGATCGAACTCTATCTCAAAATAAA 57.248 33.333 11.88 0.00 32.28 1.40
1635 1646 3.034924 GGCACCACATGTCCTTTCA 57.965 52.632 0.00 0.00 0.00 2.69
1656 1667 6.365789 GTCATCAATTACCAAAACCACACATG 59.634 38.462 0.00 0.00 0.00 3.21
1657 1668 6.041409 TGTCATCAATTACCAAAACCACACAT 59.959 34.615 0.00 0.00 0.00 3.21
1658 1669 5.360999 TGTCATCAATTACCAAAACCACACA 59.639 36.000 0.00 0.00 0.00 3.72
1659 1670 5.837437 TGTCATCAATTACCAAAACCACAC 58.163 37.500 0.00 0.00 0.00 3.82
1660 1671 6.471233 TTGTCATCAATTACCAAAACCACA 57.529 33.333 0.00 0.00 0.00 4.17
1661 1672 7.378181 AGATTGTCATCAATTACCAAAACCAC 58.622 34.615 0.00 0.00 43.33 4.16
1662 1673 7.451255 AGAGATTGTCATCAATTACCAAAACCA 59.549 33.333 0.00 0.00 43.33 3.67
1663 1674 7.830739 AGAGATTGTCATCAATTACCAAAACC 58.169 34.615 0.00 0.00 43.33 3.27
1666 1677 9.123902 CCATAGAGATTGTCATCAATTACCAAA 57.876 33.333 0.00 0.00 43.33 3.28
1667 1678 8.493607 TCCATAGAGATTGTCATCAATTACCAA 58.506 33.333 0.00 0.00 43.33 3.67
1668 1679 7.933577 GTCCATAGAGATTGTCATCAATTACCA 59.066 37.037 0.00 0.00 43.33 3.25
1669 1680 8.153550 AGTCCATAGAGATTGTCATCAATTACC 58.846 37.037 0.00 0.00 43.33 2.85
1673 1684 9.722184 CATTAGTCCATAGAGATTGTCATCAAT 57.278 33.333 0.00 0.00 45.57 2.57
1674 1685 8.152898 CCATTAGTCCATAGAGATTGTCATCAA 58.847 37.037 0.00 0.00 37.98 2.57
1675 1686 7.290948 ACCATTAGTCCATAGAGATTGTCATCA 59.709 37.037 0.00 0.00 0.00 3.07
1676 1687 7.675062 ACCATTAGTCCATAGAGATTGTCATC 58.325 38.462 0.00 0.00 0.00 2.92
1677 1688 7.623999 ACCATTAGTCCATAGAGATTGTCAT 57.376 36.000 0.00 0.00 0.00 3.06
1678 1689 7.275183 CAACCATTAGTCCATAGAGATTGTCA 58.725 38.462 0.00 0.00 0.00 3.58
1679 1690 6.203723 GCAACCATTAGTCCATAGAGATTGTC 59.796 42.308 0.00 0.00 0.00 3.18
1680 1691 6.058183 GCAACCATTAGTCCATAGAGATTGT 58.942 40.000 0.00 0.00 0.00 2.71
1681 1692 5.471456 GGCAACCATTAGTCCATAGAGATTG 59.529 44.000 0.00 0.00 0.00 2.67
1682 1693 5.370880 AGGCAACCATTAGTCCATAGAGATT 59.629 40.000 0.00 0.00 37.17 2.40
1683 1694 4.910304 AGGCAACCATTAGTCCATAGAGAT 59.090 41.667 0.00 0.00 37.17 2.75
1684 1695 4.298626 AGGCAACCATTAGTCCATAGAGA 58.701 43.478 0.00 0.00 37.17 3.10
1685 1696 4.696479 AGGCAACCATTAGTCCATAGAG 57.304 45.455 0.00 0.00 37.17 2.43
1686 1697 4.473196 TCAAGGCAACCATTAGTCCATAGA 59.527 41.667 0.00 0.00 37.17 1.98
1687 1698 4.780815 TCAAGGCAACCATTAGTCCATAG 58.219 43.478 0.00 0.00 37.17 2.23
1688 1699 4.227300 ACTCAAGGCAACCATTAGTCCATA 59.773 41.667 0.00 0.00 37.17 2.74
1689 1700 3.010584 ACTCAAGGCAACCATTAGTCCAT 59.989 43.478 0.00 0.00 37.17 3.41
1690 1701 2.375174 ACTCAAGGCAACCATTAGTCCA 59.625 45.455 0.00 0.00 37.17 4.02
1691 1702 3.073274 ACTCAAGGCAACCATTAGTCC 57.927 47.619 0.00 0.00 37.17 3.85
1692 1703 8.451908 AATATAACTCAAGGCAACCATTAGTC 57.548 34.615 0.00 0.00 37.17 2.59
1693 1704 8.686334 CAAATATAACTCAAGGCAACCATTAGT 58.314 33.333 0.00 0.00 37.17 2.24
1694 1705 8.902806 TCAAATATAACTCAAGGCAACCATTAG 58.097 33.333 0.00 0.00 37.17 1.73
1695 1706 8.815565 TCAAATATAACTCAAGGCAACCATTA 57.184 30.769 0.00 0.00 37.17 1.90
1696 1707 7.716799 TCAAATATAACTCAAGGCAACCATT 57.283 32.000 0.00 0.00 37.17 3.16
1697 1708 7.147846 CCTTCAAATATAACTCAAGGCAACCAT 60.148 37.037 0.00 0.00 37.17 3.55
1698 1709 6.152661 CCTTCAAATATAACTCAAGGCAACCA 59.847 38.462 0.00 0.00 37.17 3.67
1699 1710 6.405842 CCCTTCAAATATAACTCAAGGCAACC 60.406 42.308 0.00 0.00 30.77 3.77
1700 1711 6.152831 ACCCTTCAAATATAACTCAAGGCAAC 59.847 38.462 0.00 0.00 30.77 4.17
1701 1712 6.252995 ACCCTTCAAATATAACTCAAGGCAA 58.747 36.000 0.00 0.00 30.77 4.52
1702 1713 5.826643 ACCCTTCAAATATAACTCAAGGCA 58.173 37.500 0.00 0.00 30.77 4.75
1703 1714 6.775594 AACCCTTCAAATATAACTCAAGGC 57.224 37.500 0.00 0.00 30.77 4.35
1704 1715 8.251026 GGAAAACCCTTCAAATATAACTCAAGG 58.749 37.037 0.00 0.00 0.00 3.61
1705 1716 8.251026 GGGAAAACCCTTCAAATATAACTCAAG 58.749 37.037 0.00 0.00 34.51 3.02
1706 1717 7.730784 TGGGAAAACCCTTCAAATATAACTCAA 59.269 33.333 6.85 0.00 39.07 3.02
1707 1718 7.242359 TGGGAAAACCCTTCAAATATAACTCA 58.758 34.615 6.85 0.00 39.07 3.41
1708 1719 7.712204 TGGGAAAACCCTTCAAATATAACTC 57.288 36.000 6.85 0.00 39.07 3.01
1709 1720 9.421399 CTATGGGAAAACCCTTCAAATATAACT 57.579 33.333 6.85 0.00 39.07 2.24
1710 1721 8.638873 CCTATGGGAAAACCCTTCAAATATAAC 58.361 37.037 6.85 0.00 39.07 1.89
1711 1722 7.289084 GCCTATGGGAAAACCCTTCAAATATAA 59.711 37.037 0.00 0.00 39.07 0.98
1712 1723 6.780522 GCCTATGGGAAAACCCTTCAAATATA 59.219 38.462 0.00 0.00 39.07 0.86
1713 1724 5.602561 GCCTATGGGAAAACCCTTCAAATAT 59.397 40.000 0.00 0.00 39.07 1.28
1714 1725 4.959839 GCCTATGGGAAAACCCTTCAAATA 59.040 41.667 0.00 0.00 39.07 1.40
1715 1726 3.774766 GCCTATGGGAAAACCCTTCAAAT 59.225 43.478 0.00 0.00 39.07 2.32
1716 1727 3.169908 GCCTATGGGAAAACCCTTCAAA 58.830 45.455 0.00 0.00 39.07 2.69
1717 1728 2.381961 AGCCTATGGGAAAACCCTTCAA 59.618 45.455 0.00 0.00 39.07 2.69
1718 1729 2.000048 AGCCTATGGGAAAACCCTTCA 59.000 47.619 0.00 0.00 39.07 3.02
1719 1730 2.828661 AGCCTATGGGAAAACCCTTC 57.171 50.000 0.00 0.00 39.07 3.46
1720 1731 3.560357 AAAGCCTATGGGAAAACCCTT 57.440 42.857 0.00 3.16 39.07 3.95
1721 1732 3.077543 AGAAAAGCCTATGGGAAAACCCT 59.922 43.478 0.00 0.00 39.07 4.34
1722 1733 3.441101 AGAAAAGCCTATGGGAAAACCC 58.559 45.455 0.00 0.00 39.07 4.11
1723 1734 4.322725 CCAAGAAAAGCCTATGGGAAAACC 60.323 45.833 0.00 0.00 40.81 3.27
1724 1735 4.526650 TCCAAGAAAAGCCTATGGGAAAAC 59.473 41.667 0.00 0.00 33.58 2.43
1725 1736 4.746466 TCCAAGAAAAGCCTATGGGAAAA 58.254 39.130 0.00 0.00 33.58 2.29
1726 1737 4.202673 ACTCCAAGAAAAGCCTATGGGAAA 60.203 41.667 0.00 0.00 33.58 3.13
1727 1738 3.333680 ACTCCAAGAAAAGCCTATGGGAA 59.666 43.478 0.00 0.00 33.58 3.97
1728 1739 2.919602 ACTCCAAGAAAAGCCTATGGGA 59.080 45.455 0.00 0.00 33.58 4.37
1729 1740 3.282885 GACTCCAAGAAAAGCCTATGGG 58.717 50.000 0.00 0.00 0.00 4.00
1730 1741 3.282885 GGACTCCAAGAAAAGCCTATGG 58.717 50.000 0.00 0.00 0.00 2.74
1731 1742 3.955471 TGGACTCCAAGAAAAGCCTATG 58.045 45.455 0.00 0.00 0.00 2.23
1732 1743 4.870021 ATGGACTCCAAGAAAAGCCTAT 57.130 40.909 0.66 0.00 36.95 2.57
1733 1744 4.657814 AATGGACTCCAAGAAAAGCCTA 57.342 40.909 0.66 0.00 36.95 3.93
1734 1745 3.532641 AATGGACTCCAAGAAAAGCCT 57.467 42.857 0.66 0.00 36.95 4.58
1735 1746 3.321968 ACAAATGGACTCCAAGAAAAGCC 59.678 43.478 0.66 0.00 36.95 4.35
1736 1747 4.590850 ACAAATGGACTCCAAGAAAAGC 57.409 40.909 0.66 0.00 36.95 3.51
1751 1762 9.097257 ACAAACTCTTATTGAAACCAACAAATG 57.903 29.630 0.00 0.00 0.00 2.32
1752 1763 9.097257 CACAAACTCTTATTGAAACCAACAAAT 57.903 29.630 0.00 0.00 0.00 2.32
1753 1764 8.307483 TCACAAACTCTTATTGAAACCAACAAA 58.693 29.630 0.00 0.00 0.00 2.83
1754 1765 7.831753 TCACAAACTCTTATTGAAACCAACAA 58.168 30.769 0.00 0.00 0.00 2.83
1755 1766 7.397892 TCACAAACTCTTATTGAAACCAACA 57.602 32.000 0.00 0.00 0.00 3.33
1756 1767 8.134895 TCATCACAAACTCTTATTGAAACCAAC 58.865 33.333 0.00 0.00 0.00 3.77
1757 1768 8.134895 GTCATCACAAACTCTTATTGAAACCAA 58.865 33.333 0.00 0.00 0.00 3.67
1758 1769 7.255451 GGTCATCACAAACTCTTATTGAAACCA 60.255 37.037 0.00 0.00 0.00 3.67
1759 1770 7.084486 GGTCATCACAAACTCTTATTGAAACC 58.916 38.462 0.00 0.00 0.00 3.27
1760 1771 7.648142 TGGTCATCACAAACTCTTATTGAAAC 58.352 34.615 0.00 0.00 0.00 2.78
1761 1772 7.815840 TGGTCATCACAAACTCTTATTGAAA 57.184 32.000 0.00 0.00 0.00 2.69
1762 1773 7.522073 GCTTGGTCATCACAAACTCTTATTGAA 60.522 37.037 0.00 0.00 0.00 2.69
1763 1774 6.072508 GCTTGGTCATCACAAACTCTTATTGA 60.073 38.462 0.00 0.00 0.00 2.57
1764 1775 6.072286 AGCTTGGTCATCACAAACTCTTATTG 60.072 38.462 0.00 0.00 0.00 1.90
1765 1776 6.006449 AGCTTGGTCATCACAAACTCTTATT 58.994 36.000 0.00 0.00 0.00 1.40
1766 1777 5.413833 CAGCTTGGTCATCACAAACTCTTAT 59.586 40.000 0.00 0.00 0.00 1.73
1767 1778 4.756642 CAGCTTGGTCATCACAAACTCTTA 59.243 41.667 0.00 0.00 0.00 2.10
1768 1779 3.567164 CAGCTTGGTCATCACAAACTCTT 59.433 43.478 0.00 0.00 0.00 2.85
1769 1780 3.144506 CAGCTTGGTCATCACAAACTCT 58.855 45.455 0.00 0.00 0.00 3.24
1770 1781 2.351157 GCAGCTTGGTCATCACAAACTC 60.351 50.000 0.00 0.00 0.00 3.01
1771 1782 1.610522 GCAGCTTGGTCATCACAAACT 59.389 47.619 0.00 0.00 0.00 2.66
1772 1783 1.610522 AGCAGCTTGGTCATCACAAAC 59.389 47.619 0.00 0.00 0.00 2.93
1773 1784 1.985473 AGCAGCTTGGTCATCACAAA 58.015 45.000 0.00 0.00 0.00 2.83
1774 1785 2.857186 TAGCAGCTTGGTCATCACAA 57.143 45.000 0.00 0.00 0.00 3.33
1775 1786 3.354948 AATAGCAGCTTGGTCATCACA 57.645 42.857 0.00 0.00 0.00 3.58
1776 1787 4.274459 CCTTAATAGCAGCTTGGTCATCAC 59.726 45.833 0.00 0.00 0.00 3.06
1777 1788 4.164030 TCCTTAATAGCAGCTTGGTCATCA 59.836 41.667 0.00 0.00 0.00 3.07
1778 1789 4.708177 TCCTTAATAGCAGCTTGGTCATC 58.292 43.478 0.00 0.00 0.00 2.92
1779 1790 4.778213 TCCTTAATAGCAGCTTGGTCAT 57.222 40.909 0.00 0.00 0.00 3.06
1780 1791 4.568072 TTCCTTAATAGCAGCTTGGTCA 57.432 40.909 0.00 0.00 0.00 4.02
1781 1792 7.094592 GGATAATTCCTTAATAGCAGCTTGGTC 60.095 40.741 0.00 0.00 39.14 4.02
1782 1793 6.717084 GGATAATTCCTTAATAGCAGCTTGGT 59.283 38.462 0.00 0.00 39.14 3.67
1783 1794 6.716628 TGGATAATTCCTTAATAGCAGCTTGG 59.283 38.462 0.00 0.00 43.07 3.61
1784 1795 7.750229 TGGATAATTCCTTAATAGCAGCTTG 57.250 36.000 0.00 0.00 43.07 4.01
1785 1796 8.766994 TTTGGATAATTCCTTAATAGCAGCTT 57.233 30.769 0.00 0.00 43.07 3.74
1786 1797 8.220559 TCTTTGGATAATTCCTTAATAGCAGCT 58.779 33.333 0.00 0.00 43.07 4.24
1787 1798 8.396272 TCTTTGGATAATTCCTTAATAGCAGC 57.604 34.615 0.00 0.00 43.07 5.25
1807 1818 7.381766 TCAACACTCATATGACCAATCTTTG 57.618 36.000 0.00 0.00 0.00 2.77
1808 1819 6.094603 GCTCAACACTCATATGACCAATCTTT 59.905 38.462 0.00 0.00 0.00 2.52
1809 1820 5.587844 GCTCAACACTCATATGACCAATCTT 59.412 40.000 0.00 0.00 0.00 2.40
1810 1821 5.104610 AGCTCAACACTCATATGACCAATCT 60.105 40.000 0.00 0.00 0.00 2.40
1811 1822 5.121811 AGCTCAACACTCATATGACCAATC 58.878 41.667 0.00 0.00 0.00 2.67
1812 1823 5.108187 AGCTCAACACTCATATGACCAAT 57.892 39.130 0.00 0.00 0.00 3.16
1813 1824 4.558226 AGCTCAACACTCATATGACCAA 57.442 40.909 0.00 0.00 0.00 3.67
1814 1825 4.558226 AAGCTCAACACTCATATGACCA 57.442 40.909 0.00 0.00 0.00 4.02
1815 1826 6.512415 GCAATAAGCTCAACACTCATATGACC 60.512 42.308 0.00 0.00 41.15 4.02
1816 1827 6.037500 TGCAATAAGCTCAACACTCATATGAC 59.962 38.462 0.00 0.00 45.94 3.06
1817 1828 6.114767 TGCAATAAGCTCAACACTCATATGA 58.885 36.000 5.07 5.07 45.94 2.15
1818 1829 6.367686 TGCAATAAGCTCAACACTCATATG 57.632 37.500 0.00 0.00 45.94 1.78
1819 1830 6.459298 GCTTGCAATAAGCTCAACACTCATAT 60.459 38.462 0.00 0.00 45.94 1.78
1820 1831 5.163723 GCTTGCAATAAGCTCAACACTCATA 60.164 40.000 0.00 0.00 45.94 2.15
1821 1832 4.380233 GCTTGCAATAAGCTCAACACTCAT 60.380 41.667 0.00 0.00 45.94 2.90
1822 1833 3.058016 GCTTGCAATAAGCTCAACACTCA 60.058 43.478 0.00 0.00 45.94 3.41
1823 1834 3.058016 TGCTTGCAATAAGCTCAACACTC 60.058 43.478 10.10 0.00 45.94 3.51
1824 1835 2.886523 TGCTTGCAATAAGCTCAACACT 59.113 40.909 10.10 0.00 45.94 3.55
1825 1836 3.287312 TGCTTGCAATAAGCTCAACAC 57.713 42.857 10.10 0.00 45.94 3.32
1826 1837 3.256383 ACATGCTTGCAATAAGCTCAACA 59.744 39.130 10.10 0.00 45.94 3.33
1827 1838 3.841643 ACATGCTTGCAATAAGCTCAAC 58.158 40.909 10.10 0.00 45.94 3.18
1828 1839 3.760151 AGACATGCTTGCAATAAGCTCAA 59.240 39.130 10.10 0.00 45.94 3.02
1829 1840 3.349927 AGACATGCTTGCAATAAGCTCA 58.650 40.909 10.10 0.00 45.94 4.26
1830 1841 4.103357 CAAGACATGCTTGCAATAAGCTC 58.897 43.478 14.20 0.27 46.67 4.09
1831 1842 4.106029 CAAGACATGCTTGCAATAAGCT 57.894 40.909 14.20 0.00 46.67 3.74
1841 1852 4.396522 AGCTTCTTCTTCAAGACATGCTT 58.603 39.130 0.00 0.00 38.44 3.91
1842 1853 4.018484 AGCTTCTTCTTCAAGACATGCT 57.982 40.909 0.00 0.00 38.44 3.79
1843 1854 4.023365 ACAAGCTTCTTCTTCAAGACATGC 60.023 41.667 0.00 0.00 38.44 4.06
1844 1855 5.008415 ACACAAGCTTCTTCTTCAAGACATG 59.992 40.000 0.00 0.00 38.44 3.21
1845 1856 5.008415 CACACAAGCTTCTTCTTCAAGACAT 59.992 40.000 0.00 0.00 38.44 3.06
1846 1857 4.333649 CACACAAGCTTCTTCTTCAAGACA 59.666 41.667 0.00 0.00 38.44 3.41
1847 1858 4.572389 TCACACAAGCTTCTTCTTCAAGAC 59.428 41.667 0.00 0.00 38.44 3.01
1848 1859 4.769688 TCACACAAGCTTCTTCTTCAAGA 58.230 39.130 0.00 0.00 36.82 3.02
1849 1860 5.237996 TGATCACACAAGCTTCTTCTTCAAG 59.762 40.000 0.00 0.00 0.00 3.02
1850 1861 5.125356 TGATCACACAAGCTTCTTCTTCAA 58.875 37.500 0.00 0.00 0.00 2.69
1851 1862 4.707105 TGATCACACAAGCTTCTTCTTCA 58.293 39.130 0.00 0.00 0.00 3.02
1852 1863 5.876612 ATGATCACACAAGCTTCTTCTTC 57.123 39.130 0.00 0.00 0.00 2.87
1853 1864 5.766670 TGAATGATCACACAAGCTTCTTCTT 59.233 36.000 0.00 0.00 0.00 2.52
1854 1865 5.311265 TGAATGATCACACAAGCTTCTTCT 58.689 37.500 0.00 0.00 0.00 2.85
1855 1866 5.618056 TGAATGATCACACAAGCTTCTTC 57.382 39.130 0.00 0.00 0.00 2.87
1856 1867 5.475909 ACATGAATGATCACACAAGCTTCTT 59.524 36.000 0.00 0.00 38.69 2.52
1857 1868 5.008331 ACATGAATGATCACACAAGCTTCT 58.992 37.500 0.00 0.00 38.69 2.85
1858 1869 5.306532 ACATGAATGATCACACAAGCTTC 57.693 39.130 0.00 0.00 38.69 3.86
1859 1870 5.717078 AACATGAATGATCACACAAGCTT 57.283 34.783 0.00 0.00 38.69 3.74
1860 1871 5.717078 AAACATGAATGATCACACAAGCT 57.283 34.783 0.00 0.00 38.69 3.74
1861 1872 5.801947 GGTAAACATGAATGATCACACAAGC 59.198 40.000 0.00 0.00 38.69 4.01
1862 1873 7.149569 AGGTAAACATGAATGATCACACAAG 57.850 36.000 0.00 1.07 38.69 3.16
1863 1874 7.230309 TGAAGGTAAACATGAATGATCACACAA 59.770 33.333 0.00 0.00 38.69 3.33
1864 1875 6.714356 TGAAGGTAAACATGAATGATCACACA 59.286 34.615 0.00 1.37 38.69 3.72
1865 1876 7.144722 TGAAGGTAAACATGAATGATCACAC 57.855 36.000 0.00 0.00 38.69 3.82
1866 1877 7.665145 TCTTGAAGGTAAACATGAATGATCACA 59.335 33.333 0.00 0.00 38.69 3.58
1867 1878 7.965107 GTCTTGAAGGTAAACATGAATGATCAC 59.035 37.037 0.00 0.00 38.69 3.06
1868 1879 7.665145 TGTCTTGAAGGTAAACATGAATGATCA 59.335 33.333 0.00 0.00 40.57 2.92
1869 1880 8.044060 TGTCTTGAAGGTAAACATGAATGATC 57.956 34.615 0.00 0.00 0.00 2.92
1870 1881 8.585471 ATGTCTTGAAGGTAAACATGAATGAT 57.415 30.769 0.00 0.00 0.00 2.45
1871 1882 7.665145 TGATGTCTTGAAGGTAAACATGAATGA 59.335 33.333 0.00 0.00 31.04 2.57
1872 1883 7.819644 TGATGTCTTGAAGGTAAACATGAATG 58.180 34.615 0.00 0.00 31.04 2.67
1873 1884 8.585471 ATGATGTCTTGAAGGTAAACATGAAT 57.415 30.769 0.00 0.00 31.04 2.57
1874 1885 7.121168 GGATGATGTCTTGAAGGTAAACATGAA 59.879 37.037 0.00 0.00 31.04 2.57
1875 1886 6.599244 GGATGATGTCTTGAAGGTAAACATGA 59.401 38.462 0.00 0.00 31.04 3.07
1876 1887 6.375174 TGGATGATGTCTTGAAGGTAAACATG 59.625 38.462 2.47 0.00 31.04 3.21
1877 1888 6.484288 TGGATGATGTCTTGAAGGTAAACAT 58.516 36.000 0.00 0.00 33.45 2.71
1878 1889 5.875224 TGGATGATGTCTTGAAGGTAAACA 58.125 37.500 0.00 0.00 0.00 2.83
1879 1890 6.817765 TTGGATGATGTCTTGAAGGTAAAC 57.182 37.500 0.00 0.00 0.00 2.01
1880 1891 7.669304 TCATTTGGATGATGTCTTGAAGGTAAA 59.331 33.333 0.00 0.00 37.37 2.01
1881 1892 7.174413 TCATTTGGATGATGTCTTGAAGGTAA 58.826 34.615 0.00 0.00 37.37 2.85
1882 1893 6.720309 TCATTTGGATGATGTCTTGAAGGTA 58.280 36.000 0.00 0.00 37.37 3.08
1883 1894 5.573219 TCATTTGGATGATGTCTTGAAGGT 58.427 37.500 0.00 0.00 37.37 3.50
1884 1895 6.376299 TCTTCATTTGGATGATGTCTTGAAGG 59.624 38.462 8.86 0.00 41.71 3.46
1885 1896 7.336176 TCTCTTCATTTGGATGATGTCTTGAAG 59.664 37.037 0.00 0.00 41.71 3.02
1886 1897 7.170277 TCTCTTCATTTGGATGATGTCTTGAA 58.830 34.615 0.00 0.00 41.71 2.69
1887 1898 6.714278 TCTCTTCATTTGGATGATGTCTTGA 58.286 36.000 0.00 0.00 41.71 3.02
1888 1899 6.598457 ACTCTCTTCATTTGGATGATGTCTTG 59.402 38.462 0.00 0.00 41.71 3.02
1889 1900 6.719301 ACTCTCTTCATTTGGATGATGTCTT 58.281 36.000 0.00 0.00 41.71 3.01
1890 1901 6.310764 ACTCTCTTCATTTGGATGATGTCT 57.689 37.500 0.00 0.00 41.71 3.41
1891 1902 6.677431 GCAACTCTCTTCATTTGGATGATGTC 60.677 42.308 0.00 0.00 41.71 3.06
1892 1903 5.125097 GCAACTCTCTTCATTTGGATGATGT 59.875 40.000 0.00 0.00 41.71 3.06
1893 1904 5.124936 TGCAACTCTCTTCATTTGGATGATG 59.875 40.000 0.00 0.00 41.71 3.07
1894 1905 5.258841 TGCAACTCTCTTCATTTGGATGAT 58.741 37.500 0.00 0.00 41.71 2.45
1895 1906 4.654915 TGCAACTCTCTTCATTTGGATGA 58.345 39.130 0.00 0.00 40.46 2.92
1896 1907 5.381174 TTGCAACTCTCTTCATTTGGATG 57.619 39.130 0.00 0.00 34.46 3.51
1897 1908 5.771666 TCTTTGCAACTCTCTTCATTTGGAT 59.228 36.000 0.00 0.00 0.00 3.41
1898 1909 5.132502 TCTTTGCAACTCTCTTCATTTGGA 58.867 37.500 0.00 0.00 0.00 3.53
1899 1910 5.443185 TCTTTGCAACTCTCTTCATTTGG 57.557 39.130 0.00 0.00 0.00 3.28
1900 1911 7.143340 TGAATCTTTGCAACTCTCTTCATTTG 58.857 34.615 0.00 0.00 0.00 2.32
1901 1912 7.281040 TGAATCTTTGCAACTCTCTTCATTT 57.719 32.000 0.00 0.00 0.00 2.32
1902 1913 6.889301 TGAATCTTTGCAACTCTCTTCATT 57.111 33.333 0.00 0.00 0.00 2.57
1903 1914 6.072064 CCTTGAATCTTTGCAACTCTCTTCAT 60.072 38.462 0.00 0.00 0.00 2.57
1904 1915 5.240183 CCTTGAATCTTTGCAACTCTCTTCA 59.760 40.000 0.00 1.95 0.00 3.02
1905 1916 5.240403 ACCTTGAATCTTTGCAACTCTCTTC 59.760 40.000 0.00 0.00 0.00 2.87
1906 1917 5.136105 ACCTTGAATCTTTGCAACTCTCTT 58.864 37.500 0.00 0.00 0.00 2.85
1907 1918 4.723309 ACCTTGAATCTTTGCAACTCTCT 58.277 39.130 0.00 0.00 0.00 3.10
1908 1919 5.009010 TCAACCTTGAATCTTTGCAACTCTC 59.991 40.000 0.00 0.00 33.55 3.20
1909 1920 4.889409 TCAACCTTGAATCTTTGCAACTCT 59.111 37.500 0.00 0.00 33.55 3.24
1910 1921 5.186996 TCAACCTTGAATCTTTGCAACTC 57.813 39.130 0.00 0.00 33.55 3.01
1911 1922 5.302568 TGATCAACCTTGAATCTTTGCAACT 59.697 36.000 0.00 0.00 41.13 3.16
1912 1923 5.531634 TGATCAACCTTGAATCTTTGCAAC 58.468 37.500 0.00 0.00 41.13 4.17
1913 1924 5.787953 TGATCAACCTTGAATCTTTGCAA 57.212 34.783 0.00 0.00 41.13 4.08
1914 1925 5.535783 TCTTGATCAACCTTGAATCTTTGCA 59.464 36.000 3.38 0.00 41.13 4.08
1915 1926 5.860716 GTCTTGATCAACCTTGAATCTTTGC 59.139 40.000 3.38 0.00 41.13 3.68
1916 1927 7.211966 AGTCTTGATCAACCTTGAATCTTTG 57.788 36.000 3.38 0.00 41.13 2.77
1917 1928 8.924511 TTAGTCTTGATCAACCTTGAATCTTT 57.075 30.769 3.38 0.00 41.13 2.52
1918 1929 8.160106 ACTTAGTCTTGATCAACCTTGAATCTT 58.840 33.333 3.38 0.00 41.13 2.40
1919 1930 7.684529 ACTTAGTCTTGATCAACCTTGAATCT 58.315 34.615 3.38 0.00 41.13 2.40
1920 1931 7.604164 TGACTTAGTCTTGATCAACCTTGAATC 59.396 37.037 13.86 0.00 35.67 2.52
1921 1932 7.453393 TGACTTAGTCTTGATCAACCTTGAAT 58.547 34.615 13.86 2.39 35.67 2.57
1922 1933 6.826668 TGACTTAGTCTTGATCAACCTTGAA 58.173 36.000 13.86 0.00 35.67 2.69
1923 1934 6.419484 TGACTTAGTCTTGATCAACCTTGA 57.581 37.500 13.86 0.00 36.13 3.02
1924 1935 6.931281 TCTTGACTTAGTCTTGATCAACCTTG 59.069 38.462 13.86 0.00 33.15 3.61
1925 1936 7.067496 TCTTGACTTAGTCTTGATCAACCTT 57.933 36.000 13.86 0.00 33.15 3.50
1926 1937 6.268847 ACTCTTGACTTAGTCTTGATCAACCT 59.731 38.462 13.86 6.11 33.15 3.50
1927 1938 6.367422 CACTCTTGACTTAGTCTTGATCAACC 59.633 42.308 13.86 0.00 33.15 3.77
1928 1939 7.148641 TCACTCTTGACTTAGTCTTGATCAAC 58.851 38.462 13.86 0.00 33.15 3.18
1929 1940 7.290110 TCACTCTTGACTTAGTCTTGATCAA 57.710 36.000 13.86 8.12 33.15 2.57
1930 1941 6.901081 TCACTCTTGACTTAGTCTTGATCA 57.099 37.500 13.86 0.00 33.15 2.92
1931 1942 8.031864 TGATTCACTCTTGACTTAGTCTTGATC 58.968 37.037 13.86 6.42 33.15 2.92
1932 1943 7.901029 TGATTCACTCTTGACTTAGTCTTGAT 58.099 34.615 13.86 0.00 33.15 2.57
1933 1944 7.290110 TGATTCACTCTTGACTTAGTCTTGA 57.710 36.000 13.86 10.10 33.15 3.02
1934 1945 7.655328 ACTTGATTCACTCTTGACTTAGTCTTG 59.345 37.037 13.86 6.41 33.15 3.02
1935 1946 7.731054 ACTTGATTCACTCTTGACTTAGTCTT 58.269 34.615 13.86 0.00 33.15 3.01
1936 1947 7.296628 ACTTGATTCACTCTTGACTTAGTCT 57.703 36.000 13.86 0.00 33.15 3.24
1937 1948 7.653713 TCAACTTGATTCACTCTTGACTTAGTC 59.346 37.037 5.27 5.27 0.00 2.59
1938 1949 7.500992 TCAACTTGATTCACTCTTGACTTAGT 58.499 34.615 0.00 0.00 0.00 2.24
1939 1950 7.953158 TCAACTTGATTCACTCTTGACTTAG 57.047 36.000 0.00 0.00 0.00 2.18
1940 1951 8.150296 TGATCAACTTGATTCACTCTTGACTTA 58.850 33.333 5.73 0.00 37.20 2.24
1941 1952 6.994496 TGATCAACTTGATTCACTCTTGACTT 59.006 34.615 5.73 0.00 37.20 3.01
1942 1953 6.528321 TGATCAACTTGATTCACTCTTGACT 58.472 36.000 5.73 0.00 37.20 3.41
1943 1954 6.791887 TGATCAACTTGATTCACTCTTGAC 57.208 37.500 5.73 0.00 37.20 3.18
1944 1955 7.194607 GTTGATCAACTTGATTCACTCTTGA 57.805 36.000 27.66 0.00 37.20 3.02
1959 1970 3.609103 ACGCTTTGTGAGTTGATCAAC 57.391 42.857 27.69 27.69 40.43 3.18
1960 1971 4.627058 TCTACGCTTTGTGAGTTGATCAA 58.373 39.130 3.38 3.38 40.43 2.57
1961 1972 4.251543 TCTACGCTTTGTGAGTTGATCA 57.748 40.909 0.00 0.00 34.79 2.92
1962 1973 4.923871 TCTTCTACGCTTTGTGAGTTGATC 59.076 41.667 0.00 0.00 31.85 2.92
1963 1974 4.883083 TCTTCTACGCTTTGTGAGTTGAT 58.117 39.130 0.00 0.00 31.85 2.57
1964 1975 4.316205 TCTTCTACGCTTTGTGAGTTGA 57.684 40.909 0.00 0.00 0.00 3.18
1965 1976 4.449068 ACATCTTCTACGCTTTGTGAGTTG 59.551 41.667 0.00 0.00 0.00 3.16
1966 1977 4.632153 ACATCTTCTACGCTTTGTGAGTT 58.368 39.130 0.00 0.00 0.00 3.01
1967 1978 4.258702 ACATCTTCTACGCTTTGTGAGT 57.741 40.909 0.00 0.00 0.00 3.41
1968 1979 4.563184 GGTACATCTTCTACGCTTTGTGAG 59.437 45.833 0.00 0.00 0.00 3.51
1969 1980 4.491676 GGTACATCTTCTACGCTTTGTGA 58.508 43.478 0.00 0.00 0.00 3.58
1970 1981 3.303495 CGGTACATCTTCTACGCTTTGTG 59.697 47.826 0.00 0.00 0.00 3.33
1971 1982 3.192001 TCGGTACATCTTCTACGCTTTGT 59.808 43.478 0.00 0.00 0.00 2.83
1972 1983 3.766151 TCGGTACATCTTCTACGCTTTG 58.234 45.455 0.00 0.00 0.00 2.77
1973 1984 3.693085 TCTCGGTACATCTTCTACGCTTT 59.307 43.478 0.00 0.00 0.00 3.51
1974 1985 3.276857 TCTCGGTACATCTTCTACGCTT 58.723 45.455 0.00 0.00 0.00 4.68
1975 1986 2.873472 CTCTCGGTACATCTTCTACGCT 59.127 50.000 0.00 0.00 0.00 5.07
1976 1987 2.031857 CCTCTCGGTACATCTTCTACGC 60.032 54.545 0.00 0.00 0.00 4.42
1977 1988 2.548904 CCCTCTCGGTACATCTTCTACG 59.451 54.545 0.00 0.00 0.00 3.51
1978 1989 3.818180 TCCCTCTCGGTACATCTTCTAC 58.182 50.000 0.00 0.00 0.00 2.59
1979 1990 4.104261 TGATCCCTCTCGGTACATCTTCTA 59.896 45.833 0.00 0.00 0.00 2.10
1980 1991 3.117474 TGATCCCTCTCGGTACATCTTCT 60.117 47.826 0.00 0.00 0.00 2.85
1981 1992 3.223435 TGATCCCTCTCGGTACATCTTC 58.777 50.000 0.00 0.00 0.00 2.87
1982 1993 3.314307 TGATCCCTCTCGGTACATCTT 57.686 47.619 0.00 0.00 0.00 2.40
1983 1994 3.226777 CTTGATCCCTCTCGGTACATCT 58.773 50.000 0.00 0.00 0.00 2.90
1984 1995 2.959707 ACTTGATCCCTCTCGGTACATC 59.040 50.000 0.00 0.00 0.00 3.06
1985 1996 2.695666 CACTTGATCCCTCTCGGTACAT 59.304 50.000 0.00 0.00 0.00 2.29
1986 1997 2.100197 CACTTGATCCCTCTCGGTACA 58.900 52.381 0.00 0.00 0.00 2.90
1987 1998 2.376109 TCACTTGATCCCTCTCGGTAC 58.624 52.381 0.00 0.00 0.00 3.34
1988 1999 2.820728 TCACTTGATCCCTCTCGGTA 57.179 50.000 0.00 0.00 0.00 4.02
1989 2000 2.035632 GATCACTTGATCCCTCTCGGT 58.964 52.381 7.87 0.00 43.85 4.69
1990 2001 2.810439 GATCACTTGATCCCTCTCGG 57.190 55.000 7.87 0.00 43.85 4.63
1998 2009 4.330250 CCATACCATGGGATCACTTGATC 58.670 47.826 18.09 10.31 46.86 2.92
1999 2010 4.377762 CCATACCATGGGATCACTTGAT 57.622 45.455 18.09 0.00 46.86 2.57
2000 2011 3.862877 CCATACCATGGGATCACTTGA 57.137 47.619 18.09 0.00 46.86 3.02
2011 2022 4.206375 TGGACAATGCTTACCATACCATG 58.794 43.478 0.00 0.00 32.67 3.66
2012 2023 4.518278 TGGACAATGCTTACCATACCAT 57.482 40.909 0.00 0.00 32.67 3.55
2013 2024 4.518278 ATGGACAATGCTTACCATACCA 57.482 40.909 0.00 0.00 40.69 3.25
2014 2025 4.499696 GCAATGGACAATGCTTACCATACC 60.500 45.833 5.16 0.00 41.47 2.73
2015 2026 4.097741 TGCAATGGACAATGCTTACCATAC 59.902 41.667 12.93 0.00 41.47 2.39
2016 2027 4.097741 GTGCAATGGACAATGCTTACCATA 59.902 41.667 12.93 0.00 41.47 2.74
2017 2028 3.098377 TGCAATGGACAATGCTTACCAT 58.902 40.909 12.93 0.00 43.74 3.55
2018 2029 2.230992 GTGCAATGGACAATGCTTACCA 59.769 45.455 12.93 0.00 42.97 3.25
2019 2030 2.493278 AGTGCAATGGACAATGCTTACC 59.507 45.455 12.93 0.40 42.97 2.85
2020 2031 3.855689 AGTGCAATGGACAATGCTTAC 57.144 42.857 12.93 4.67 42.97 2.34
2021 2032 4.523943 AGAAAGTGCAATGGACAATGCTTA 59.476 37.500 12.93 0.00 42.97 3.09
2022 2033 3.322828 AGAAAGTGCAATGGACAATGCTT 59.677 39.130 12.93 0.25 42.97 3.91
2023 2034 2.895404 AGAAAGTGCAATGGACAATGCT 59.105 40.909 12.93 0.00 42.97 3.79
2024 2035 2.991190 CAGAAAGTGCAATGGACAATGC 59.009 45.455 7.79 5.44 42.86 3.56
2025 2036 4.247267 ACAGAAAGTGCAATGGACAATG 57.753 40.909 7.79 2.75 0.00 2.82
2026 2037 5.072741 AGTACAGAAAGTGCAATGGACAAT 58.927 37.500 7.79 0.00 35.00 2.71
2027 2038 4.460263 AGTACAGAAAGTGCAATGGACAA 58.540 39.130 7.79 0.00 35.00 3.18
2028 2039 4.085357 AGTACAGAAAGTGCAATGGACA 57.915 40.909 7.79 0.00 35.00 4.02
2029 2040 5.106673 GGTTAGTACAGAAAGTGCAATGGAC 60.107 44.000 0.00 0.00 35.00 4.02
2030 2041 5.001232 GGTTAGTACAGAAAGTGCAATGGA 58.999 41.667 0.00 0.00 35.00 3.41
2031 2042 4.156008 GGGTTAGTACAGAAAGTGCAATGG 59.844 45.833 0.00 0.00 35.00 3.16
2032 2043 4.759693 TGGGTTAGTACAGAAAGTGCAATG 59.240 41.667 0.00 0.00 35.00 2.82
2033 2044 4.980573 TGGGTTAGTACAGAAAGTGCAAT 58.019 39.130 0.00 0.00 35.00 3.56
2034 2045 4.425180 TGGGTTAGTACAGAAAGTGCAA 57.575 40.909 0.00 0.00 35.00 4.08
2035 2046 4.323417 CATGGGTTAGTACAGAAAGTGCA 58.677 43.478 0.00 0.00 35.00 4.57
2036 2047 3.689649 CCATGGGTTAGTACAGAAAGTGC 59.310 47.826 2.85 0.00 0.00 4.40
2037 2048 4.906618 ACCATGGGTTAGTACAGAAAGTG 58.093 43.478 18.09 0.00 27.29 3.16
2038 2049 4.844655 AGACCATGGGTTAGTACAGAAAGT 59.155 41.667 18.09 0.00 35.25 2.66
2039 2050 5.422214 AGACCATGGGTTAGTACAGAAAG 57.578 43.478 18.09 0.00 35.25 2.62
2040 2051 6.442564 ACATAGACCATGGGTTAGTACAGAAA 59.557 38.462 18.09 0.00 39.13 2.52
2041 2052 5.962031 ACATAGACCATGGGTTAGTACAGAA 59.038 40.000 18.09 0.00 39.13 3.02
2042 2053 5.362717 CACATAGACCATGGGTTAGTACAGA 59.637 44.000 18.09 0.00 39.13 3.41
2043 2054 5.362717 TCACATAGACCATGGGTTAGTACAG 59.637 44.000 18.09 0.00 39.29 2.74
2044 2055 5.274015 TCACATAGACCATGGGTTAGTACA 58.726 41.667 18.09 0.00 39.29 2.90
2045 2056 5.597182 TCTCACATAGACCATGGGTTAGTAC 59.403 44.000 18.09 0.00 39.29 2.73
2046 2057 5.773091 TCTCACATAGACCATGGGTTAGTA 58.227 41.667 18.09 0.00 39.29 1.82
2047 2058 4.620723 TCTCACATAGACCATGGGTTAGT 58.379 43.478 18.09 4.98 39.29 2.24
2048 2059 4.651503 ACTCTCACATAGACCATGGGTTAG 59.348 45.833 18.09 4.88 39.29 2.34
2049 2060 4.620723 ACTCTCACATAGACCATGGGTTA 58.379 43.478 18.09 8.33 39.29 2.85
2050 2061 3.454858 ACTCTCACATAGACCATGGGTT 58.545 45.455 18.09 6.07 39.29 4.11
2051 2062 3.121929 ACTCTCACATAGACCATGGGT 57.878 47.619 18.09 5.30 39.29 4.51
2052 2063 3.198635 ACAACTCTCACATAGACCATGGG 59.801 47.826 18.09 0.00 39.65 4.00
2053 2064 4.478206 ACAACTCTCACATAGACCATGG 57.522 45.455 11.19 11.19 39.13 3.66
2054 2065 6.478016 CACATACAACTCTCACATAGACCATG 59.522 42.308 0.00 0.00 40.78 3.66
2055 2066 6.407412 CCACATACAACTCTCACATAGACCAT 60.407 42.308 0.00 0.00 0.00 3.55
2056 2067 5.105351 CCACATACAACTCTCACATAGACCA 60.105 44.000 0.00 0.00 0.00 4.02
2057 2068 5.352284 CCACATACAACTCTCACATAGACC 58.648 45.833 0.00 0.00 0.00 3.85
2058 2069 5.352284 CCCACATACAACTCTCACATAGAC 58.648 45.833 0.00 0.00 0.00 2.59
2059 2070 4.141937 GCCCACATACAACTCTCACATAGA 60.142 45.833 0.00 0.00 0.00 1.98
2060 2071 4.122776 GCCCACATACAACTCTCACATAG 58.877 47.826 0.00 0.00 0.00 2.23
2061 2072 3.774766 AGCCCACATACAACTCTCACATA 59.225 43.478 0.00 0.00 0.00 2.29
2062 2073 2.573462 AGCCCACATACAACTCTCACAT 59.427 45.455 0.00 0.00 0.00 3.21
2063 2074 1.977854 AGCCCACATACAACTCTCACA 59.022 47.619 0.00 0.00 0.00 3.58
2064 2075 2.770164 AGCCCACATACAACTCTCAC 57.230 50.000 0.00 0.00 0.00 3.51
2065 2076 3.197766 CCTAAGCCCACATACAACTCTCA 59.802 47.826 0.00 0.00 0.00 3.27
2066 2077 3.197983 ACCTAAGCCCACATACAACTCTC 59.802 47.826 0.00 0.00 0.00 3.20
2067 2078 3.182152 ACCTAAGCCCACATACAACTCT 58.818 45.455 0.00 0.00 0.00 3.24
2068 2079 3.629142 ACCTAAGCCCACATACAACTC 57.371 47.619 0.00 0.00 0.00 3.01
2069 2080 3.118884 CGTACCTAAGCCCACATACAACT 60.119 47.826 0.00 0.00 0.00 3.16
2070 2081 3.192466 CGTACCTAAGCCCACATACAAC 58.808 50.000 0.00 0.00 0.00 3.32
2071 2082 2.833338 ACGTACCTAAGCCCACATACAA 59.167 45.455 0.00 0.00 0.00 2.41
2072 2083 2.459644 ACGTACCTAAGCCCACATACA 58.540 47.619 0.00 0.00 0.00 2.29
2073 2084 4.321527 GGATACGTACCTAAGCCCACATAC 60.322 50.000 0.00 0.00 0.00 2.39
2074 2085 3.828451 GGATACGTACCTAAGCCCACATA 59.172 47.826 0.00 0.00 0.00 2.29
2075 2086 2.631545 GGATACGTACCTAAGCCCACAT 59.368 50.000 0.00 0.00 0.00 3.21
2076 2087 2.034124 GGATACGTACCTAAGCCCACA 58.966 52.381 0.00 0.00 0.00 4.17
2077 2088 2.034124 TGGATACGTACCTAAGCCCAC 58.966 52.381 0.00 0.00 42.51 4.61
2078 2089 2.457813 TGGATACGTACCTAAGCCCA 57.542 50.000 0.00 0.00 42.51 5.36
2079 2090 2.028385 CCATGGATACGTACCTAAGCCC 60.028 54.545 5.56 0.00 42.51 5.19
2080 2091 2.028385 CCCATGGATACGTACCTAAGCC 60.028 54.545 15.22 0.00 42.51 4.35
2081 2092 2.612221 GCCCATGGATACGTACCTAAGC 60.612 54.545 15.22 0.00 42.51 3.09
2082 2093 2.897969 AGCCCATGGATACGTACCTAAG 59.102 50.000 15.22 0.00 42.51 2.18
2083 2094 2.966915 AGCCCATGGATACGTACCTAA 58.033 47.619 15.22 0.00 42.51 2.69
2084 2095 2.631062 CAAGCCCATGGATACGTACCTA 59.369 50.000 15.22 0.00 42.51 3.08
2085 2096 1.416401 CAAGCCCATGGATACGTACCT 59.584 52.381 15.22 0.00 42.51 3.08
2086 2097 1.878953 CAAGCCCATGGATACGTACC 58.121 55.000 15.22 2.17 42.51 3.34
2087 2098 1.226746 GCAAGCCCATGGATACGTAC 58.773 55.000 15.22 0.00 42.51 3.67
2088 2099 0.249699 CGCAAGCCCATGGATACGTA 60.250 55.000 15.22 0.00 42.51 3.57
2089 2100 1.523711 CGCAAGCCCATGGATACGT 60.524 57.895 15.22 0.00 42.51 3.57
2090 2101 1.498865 GACGCAAGCCCATGGATACG 61.499 60.000 15.22 11.85 45.62 3.06
2091 2102 0.463654 TGACGCAAGCCCATGGATAC 60.464 55.000 15.22 1.82 45.62 2.24
2092 2103 0.254462 TTGACGCAAGCCCATGGATA 59.746 50.000 15.22 0.00 45.62 2.59
2093 2104 1.001020 TTGACGCAAGCCCATGGAT 60.001 52.632 15.22 0.00 45.62 3.41
2094 2105 1.675310 CTTGACGCAAGCCCATGGA 60.675 57.895 15.22 0.00 45.62 3.41
2095 2106 1.651240 CTCTTGACGCAAGCCCATGG 61.651 60.000 4.14 4.14 40.84 3.66
2096 2107 1.651240 CCTCTTGACGCAAGCCCATG 61.651 60.000 12.81 0.00 40.84 3.66
2097 2108 1.377725 CCTCTTGACGCAAGCCCAT 60.378 57.895 12.81 0.00 40.84 4.00
2098 2109 2.032528 CCTCTTGACGCAAGCCCA 59.967 61.111 12.81 0.00 40.84 5.36
2099 2110 2.347490 TCCTCTTGACGCAAGCCC 59.653 61.111 12.81 0.00 40.84 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.