AutoCloner

Multiple sequence alignment - TraesCS7B01G109400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G109400	chr7B	100.000	1836	0	0	924	2759	125356087	125354252	0.000000e+00	3391.0
1	TraesCS7B01G109400	chr7B	93.656	993	58	4	947	1938	125244301	125243313	0.000000e+00	1480.0
2	TraesCS7B01G109400	chr7B	100.000	705	0	0	1	705	125357010	125356306	0.000000e+00	1303.0
3	TraesCS7B01G109400	chr7B	94.026	770	42	3	1170	1938	125313255	125312489	0.000000e+00	1164.0
4	TraesCS7B01G109400	chr7B	93.896	770	43	3	1170	1938	125280443	125279677	0.000000e+00	1158.0
5	TraesCS7B01G109400	chr7B	91.928	830	55	6	994	1817	125363235	125362412	0.000000e+00	1151.0
6	TraesCS7B01G109400	chr7B	92.493	706	34	10	2068	2759	125220461	125219761	0.000000e+00	992.0
7	TraesCS7B01G109400	chr7B	92.221	707	35	11	2068	2759	125243250	125242549	0.000000e+00	983.0
8	TraesCS7B01G109400	chr7B	92.221	707	34	12	2068	2759	125279614	125278914	0.000000e+00	981.0
9	TraesCS7B01G109400	chr7B	87.356	870	89	13	948	1799	125186612	125185746	0.000000e+00	977.0
10	TraesCS7B01G109400	chr7B	93.124	669	42	3	1271	1938	125221189	125220524	0.000000e+00	977.0
11	TraesCS7B01G109400	chr7B	91.655	707	37	13	2068	2759	125312426	125311727	0.000000e+00	959.0
12	TraesCS7B01G109400	chr7B	85.321	872	113	13	946	1807	125191959	125191093	0.000000e+00	887.0
13	TraesCS7B01G109400	chr7B	86.765	680	34	30	61	695	125420173	125419505	0.000000e+00	706.0
14	TraesCS7B01G109400	chr7B	92.877	365	21	4	947	1309	125207835	125207474	2.430000e-145	525.0
15	TraesCS7B01G109400	chr7B	81.651	545	40	23	170	671	125208367	125207840	5.540000e-107	398.0
16	TraesCS7B01G109400	chr7B	81.520	487	39	24	152	604	125244974	125244505	1.220000e-93	353.0
17	TraesCS7B01G109400	chr7B	81.520	487	39	24	152	604	125281029	125280560	1.220000e-93	353.0
18	TraesCS7B01G109400	chr7B	81.520	487	39	24	152	604	125314910	125314441	1.220000e-93	353.0
19	TraesCS7B01G109400	chr7B	84.951	206	14	5	476	670	125230820	125230621	2.800000e-45	193.0
20	TraesCS7B01G109400	chr7B	84.951	206	14	5	476	670	125266996	125266797	2.800000e-45	193.0
21	TraesCS7B01G109400	chr7B	84.951	206	14	5	476	670	125336757	125336558	2.800000e-45	193.0
22	TraesCS7B01G109400	chr7B	84.466	206	14	6	476	670	125303061	125302863	1.300000e-43	187.0
23	TraesCS7B01G109400	chr7B	96.296	81	3	0	1971	2051	125220531	125220451	1.720000e-27	134.0
24	TraesCS7B01G109400	chr7B	96.296	81	3	0	1971	2051	125243320	125243240	1.720000e-27	134.0
25	TraesCS7B01G109400	chr7B	96.296	81	3	0	1971	2051	125279684	125279604	1.720000e-27	134.0
26	TraesCS7B01G109400	chr7B	96.296	81	3	0	1971	2051	125312496	125312416	1.720000e-27	134.0
27	TraesCS7B01G109400	chr7D	88.993	1817	146	30	970	2759	163251294	163249505	0.000000e+00	2198.0
28	TraesCS7B01G109400	chr7D	92.997	871	51	2	947	1817	163215655	163214795	0.000000e+00	1262.0
29	TraesCS7B01G109400	chr7D	82.353	476	32	23	254	690	163251776	163251314	1.560000e-97	366.0
30	TraesCS7B01G109400	chr7D	80.556	396	27	20	337	693	163216035	163215651	2.730000e-65	259.0
31	TraesCS7B01G109400	chr7D	85.354	198	20	5	152	345	163219162	163218970	2.170000e-46	196.0
32	TraesCS7B01G109400	chr7D	100.000	34	0	0	22	55	163251988	163251955	2.290000e-06	63.9
33	TraesCS7B01G109400	chr7D	94.872	39	2	0	626	664	163199953	163199915	8.250000e-06	62.1
34	TraesCS7B01G109400	chr7A	92.290	882	57	7	943	1817	164182181	164181304	0.000000e+00	1242.0
35	TraesCS7B01G109400	chr7A	93.924	790	45	2	997	1783	164394039	164393250	0.000000e+00	1190.0
36	TraesCS7B01G109400	chr7A	81.175	664	58	32	61	690	164394707	164394077	3.220000e-129	472.0
37	TraesCS7B01G109400	chr7A	80.720	389	35	16	335	693	164182551	164182173	1.630000e-67	267.0
38	TraesCS7B01G109400	chrUn	81.520	487	39	24	152	604	332928467	332927998	1.220000e-93	353.0
39	TraesCS7B01G109400	chr2D	81.188	303	44	7	2122	2413	577596851	577596551	5.940000e-57	231.0
40	TraesCS7B01G109400	chr1A	93.750	48	2	1	2005	2051	14616094	14616141	1.370000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G109400	chr7B	125354252	125357010	2758	True	2347.000000	3391	100.000000	1	2759	2	chr7B.!!$R14	2758
1	TraesCS7B01G109400	chr7B	125362412	125363235	823	True	1151.000000	1151	91.928000	994	1817	1	chr7B.!!$R7	823
2	TraesCS7B01G109400	chr7B	125185746	125186612	866	True	977.000000	977	87.356000	948	1799	1	chr7B.!!$R1	851
3	TraesCS7B01G109400	chr7B	125191093	125191959	866	True	887.000000	887	85.321000	946	1807	1	chr7B.!!$R2	861
4	TraesCS7B01G109400	chr7B	125242549	125244974	2425	True	737.500000	1480	90.923250	152	2759	4	chr7B.!!$R11	2607
5	TraesCS7B01G109400	chr7B	125419505	125420173	668	True	706.000000	706	86.765000	61	695	1	chr7B.!!$R8	634
6	TraesCS7B01G109400	chr7B	125219761	125221189	1428	True	701.000000	992	93.971000	1271	2759	3	chr7B.!!$R10	1488
7	TraesCS7B01G109400	chr7B	125278914	125281029	2115	True	656.500000	1158	90.983250	152	2759	4	chr7B.!!$R12	2607
8	TraesCS7B01G109400	chr7B	125311727	125314910	3183	True	652.500000	1164	90.874250	152	2759	4	chr7B.!!$R13	2607
9	TraesCS7B01G109400	chr7B	125207474	125208367	893	True	461.500000	525	87.264000	170	1309	2	chr7B.!!$R9	1139
10	TraesCS7B01G109400	chr7D	163249505	163251988	2483	True	875.966667	2198	90.448667	22	2759	3	chr7D.!!$R3	2737
11	TraesCS7B01G109400	chr7D	163214795	163219162	4367	True	572.333333	1262	86.302333	152	1817	3	chr7D.!!$R2	1665
12	TraesCS7B01G109400	chr7A	164393250	164394707	1457	True	831.000000	1190	87.549500	61	1783	2	chr7A.!!$R2	1722
13	TraesCS7B01G109400	chr7A	164181304	164182551	1247	True	754.500000	1242	86.505000	335	1817	2	chr7A.!!$R1	1482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
204	212	0.178767	TCAGCATGCTGGCGAGTTAT	59.821	50.0	39.72	5.35	43.75	1.89	F
441	3458	0.319986	TAACAGCGTGCCGTCAATGA	60.320	50.0	0.00	0.00	0.00	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1370	5059	0.317938	GCTGTAGTCGTATCCCTGCG	60.318	60.0	0.00	0.0	0.0	5.18	R
2405	6129	0.533308	AACTGAAGCGGCGTTTGGTA	60.533	50.0	15.15	0.0	0.0	3.25	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	56	3.935828	TGAACAATCACACTGAAACGTGA	59.064	39.130	0.00	0.00	45.62	4.35
86	87	5.766150	ACGGATTGAAATGAGTGAACAAA	57.234	34.783	0.00	0.00	0.00	2.83
87	88	6.331369	ACGGATTGAAATGAGTGAACAAAT	57.669	33.333	0.00	0.00	0.00	2.32
88	89	6.748132	ACGGATTGAAATGAGTGAACAAATT	58.252	32.000	0.00	0.00	0.00	1.82
90	91	7.086376	CGGATTGAAATGAGTGAACAAATTCT	58.914	34.615	0.00	0.00	35.69	2.40
92	93	9.565213	GGATTGAAATGAGTGAACAAATTCTAG	57.435	33.333	0.00	0.00	35.69	2.43
93	94	9.565213	GATTGAAATGAGTGAACAAATTCTAGG	57.435	33.333	0.00	0.00	35.69	3.02
94	95	8.463930	TTGAAATGAGTGAACAAATTCTAGGT	57.536	30.769	0.00	0.00	35.69	3.08
95	96	9.567776	TTGAAATGAGTGAACAAATTCTAGGTA	57.432	29.630	0.00	0.00	35.69	3.08
96	97	8.999431	TGAAATGAGTGAACAAATTCTAGGTAC	58.001	33.333	0.00	0.00	35.69	3.34
97	98	7.596749	AATGAGTGAACAAATTCTAGGTACG	57.403	36.000	0.00	0.00	35.69	3.67
98	99	5.475719	TGAGTGAACAAATTCTAGGTACGG	58.524	41.667	0.00	0.00	35.69	4.02
99	100	5.244402	TGAGTGAACAAATTCTAGGTACGGA	59.756	40.000	0.00	0.00	35.69	4.69
100	101	6.070995	TGAGTGAACAAATTCTAGGTACGGAT	60.071	38.462	0.00	0.00	35.69	4.18
112	113	2.036217	AGGTACGGATTGAAACGTGTCA	59.964	45.455	3.71	3.71	43.93	3.58
204	212	0.178767	TCAGCATGCTGGCGAGTTAT	59.821	50.000	39.72	5.35	43.75	1.89
211	238	6.313658	CAGCATGCTGGCGAGTTATAAATATA	59.686	38.462	35.39	0.00	40.17	0.86
215	242	4.874396	GCTGGCGAGTTATAAATATACCCC	59.126	45.833	0.00	0.00	0.00	4.95
246	275	9.623000	AAAAGTGAGTTACAAACACCTAGTAAT	57.377	29.630	0.00	0.00	35.47	1.89
313	369	2.623878	TGTTTAACTCCTTGCCGTCA	57.376	45.000	0.00	0.00	0.00	4.35
381	3396	1.202582	CCGCGTAGGAGGGATCAATAG	59.797	57.143	4.92	0.00	45.00	1.73
441	3458	0.319986	TAACAGCGTGCCGTCAATGA	60.320	50.000	0.00	0.00	0.00	2.57
442	3459	1.841663	AACAGCGTGCCGTCAATGAC	61.842	55.000	2.75	2.75	0.00	3.06
462	3507	2.290323	ACAGTTAGCCAATGTCACCTCC	60.290	50.000	0.00	0.00	0.00	4.30
673	3862	4.018506	TCCTACCCATCTCATCAGCAAAAA	60.019	41.667	0.00	0.00	0.00	1.94
701	3890	2.168458	TCGAGAGAGAGAGAGAGGGA	57.832	55.000	0.00	0.00	34.84	4.20
702	3891	2.039418	TCGAGAGAGAGAGAGAGGGAG	58.961	57.143	0.00	0.00	34.84	4.30
703	3892	2.039418	CGAGAGAGAGAGAGAGGGAGA	58.961	57.143	0.00	0.00	0.00	3.71
704	3893	2.036475	CGAGAGAGAGAGAGAGGGAGAG	59.964	59.091	0.00	0.00	0.00	3.20
945	4134	5.136068	AGAGAGAGAGAGAGAGAGAGAGA	57.864	47.826	0.00	0.00	0.00	3.10
946	4135	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
1313	5002	6.967199	GCAGTAAGTAATTACAAGTCATTGCC	59.033	38.462	17.65	0.00	40.27	4.52
1377	5066	0.900182	TCTTCTTCTGCTCGCAGGGA	60.900	55.000	17.93	13.39	43.75	4.20
1470	5159	1.968017	CATGCAGGTGTTCGGTGCT	60.968	57.895	0.00	0.00	38.09	4.40
1602	5291	2.579787	CACGATGTCGAGGCGTCC	60.580	66.667	9.67	0.00	43.02	4.79
1604	5293	2.413351	CGATGTCGAGGCGTCCAT	59.587	61.111	0.00	0.00	43.02	3.41
1623	5312	0.815095	TGCTCACCGTGTACATCGAT	59.185	50.000	16.14	0.00	0.00	3.59
1731	5420	0.391661	GCATGGAGTCTCGCTGGAAA	60.392	55.000	0.00	0.00	0.00	3.13
1801	5499	6.762702	TGTATGTTGATGGAGTTACTACGA	57.237	37.500	0.00	0.00	0.00	3.43
1871	5571	6.833041	TCTACTCTATTTGTTGGTTGGTTCA	58.167	36.000	0.00	0.00	0.00	3.18
1931	5631	5.272283	TGTAGGATTCCCGAATCTACAAC	57.728	43.478	15.22	9.73	44.90	3.32
1941	5641	5.237779	TCCCGAATCTACAACTTTGTTTCAC	59.762	40.000	0.00	0.00	42.35	3.18
1963	5663	6.539826	TCACTGATGTATTGTTAGCATCTTGG	59.460	38.462	0.00	0.00	39.58	3.61
1964	5664	5.297776	ACTGATGTATTGTTAGCATCTTGGC	59.702	40.000	0.00	0.00	39.58	4.52
1971	5671	3.457234	TGTTAGCATCTTGGCGTGATAG	58.543	45.455	0.00	0.00	39.27	2.08
1975	5675	2.679837	AGCATCTTGGCGTGATAGTTTG	59.320	45.455	0.00	0.00	39.27	2.93
1978	5678	4.615912	GCATCTTGGCGTGATAGTTTGTTT	60.616	41.667	0.00	0.00	0.00	2.83
2018	5718	5.188163	TGTTAGTTCCCGAATATCCACTTCA	59.812	40.000	0.00	0.00	0.00	3.02
2045	5745	2.997315	CTCAGGTGAGCCCGGTGA	60.997	66.667	0.00	0.00	38.74	4.02
2046	5746	2.525629	TCAGGTGAGCCCGGTGAA	60.526	61.111	0.00	0.00	38.74	3.18
2047	5747	2.358737	CAGGTGAGCCCGGTGAAC	60.359	66.667	0.00	0.00	38.74	3.18
2048	5748	2.847234	AGGTGAGCCCGGTGAACA	60.847	61.111	0.00	0.00	38.74	3.18
2049	5749	2.358737	GGTGAGCCCGGTGAACAG	60.359	66.667	0.00	0.00	0.00	3.16
2050	5750	2.426023	GTGAGCCCGGTGAACAGT	59.574	61.111	0.00	0.00	0.00	3.55
2051	5751	1.961277	GTGAGCCCGGTGAACAGTG	60.961	63.158	0.00	0.00	0.00	3.66
2052	5752	2.426023	GAGCCCGGTGAACAGTGT	59.574	61.111	0.00	0.00	0.00	3.55
2053	5753	1.116536	TGAGCCCGGTGAACAGTGTA	61.117	55.000	0.00	0.00	0.00	2.90
2054	5754	0.389948	GAGCCCGGTGAACAGTGTAG	60.390	60.000	0.00	0.00	0.00	2.74
2055	5755	1.119574	AGCCCGGTGAACAGTGTAGT	61.120	55.000	0.00	0.00	0.00	2.73
2056	5756	0.669625	GCCCGGTGAACAGTGTAGTC	60.670	60.000	0.00	0.00	0.00	2.59
2057	5757	0.037605	CCCGGTGAACAGTGTAGTCC	60.038	60.000	0.00	0.00	0.00	3.85
2058	5758	0.966920	CCGGTGAACAGTGTAGTCCT	59.033	55.000	0.00	0.00	0.00	3.85
2059	5759	1.343465	CCGGTGAACAGTGTAGTCCTT	59.657	52.381	0.00	0.00	0.00	3.36
2060	5760	2.559668	CCGGTGAACAGTGTAGTCCTTA	59.440	50.000	0.00	0.00	0.00	2.69
2061	5761	3.006110	CCGGTGAACAGTGTAGTCCTTAA	59.994	47.826	0.00	0.00	0.00	1.85
2062	5762	4.501915	CCGGTGAACAGTGTAGTCCTTAAA	60.502	45.833	0.00	0.00	0.00	1.52
2063	5763	5.051816	CGGTGAACAGTGTAGTCCTTAAAA	58.948	41.667	0.00	0.00	0.00	1.52
2064	5764	5.524646	CGGTGAACAGTGTAGTCCTTAAAAA	59.475	40.000	0.00	0.00	0.00	1.94
2065	5765	6.204108	CGGTGAACAGTGTAGTCCTTAAAAAT	59.796	38.462	0.00	0.00	0.00	1.82
2066	5766	7.385752	CGGTGAACAGTGTAGTCCTTAAAAATA	59.614	37.037	0.00	0.00	0.00	1.40
2154	5859	3.364864	GCAAGTTGTTCATGTGCGTGATA	60.365	43.478	4.48	0.00	0.00	2.15
2432	6156	0.321298	GCCGCTTCAGTTAGTTCCCA	60.321	55.000	0.00	0.00	0.00	4.37
2561	6286	5.412286	GCATTTTTGTCCTGCCACATTTTAT	59.588	36.000	0.00	0.00	0.00	1.40
2661	6388	3.238597	TCCTCCCAAAACATTTCCCAAG	58.761	45.455	0.00	0.00	0.00	3.61
2717	6446	4.910195	TGCTAGTGACCAAGATCATTTGT	58.090	39.130	0.00	0.00	0.00	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	56	6.094048	CACTCATTTCAATCCGTACCTTGAAT	59.906	38.462	11.50	3.39	40.13	2.57
56	57	5.411361	CACTCATTTCAATCCGTACCTTGAA	59.589	40.000	8.18	8.18	39.06	2.69
57	58	4.935205	CACTCATTTCAATCCGTACCTTGA	59.065	41.667	0.00	0.00	0.00	3.02
58	59	4.935205	TCACTCATTTCAATCCGTACCTTG	59.065	41.667	0.00	0.00	0.00	3.61
59	60	5.160607	TCACTCATTTCAATCCGTACCTT	57.839	39.130	0.00	0.00	0.00	3.50
86	87	5.107133	CACGTTTCAATCCGTACCTAGAAT	58.893	41.667	0.00	0.00	35.16	2.40
87	88	4.022068	ACACGTTTCAATCCGTACCTAGAA	60.022	41.667	0.00	0.00	35.16	2.10
88	89	3.507233	ACACGTTTCAATCCGTACCTAGA	59.493	43.478	0.00	0.00	35.16	2.43
90	91	3.255395	TGACACGTTTCAATCCGTACCTA	59.745	43.478	0.99	0.00	35.16	3.08
92	93	2.406130	TGACACGTTTCAATCCGTACC	58.594	47.619	0.99	0.00	35.16	3.34
93	94	3.054878	ACTGACACGTTTCAATCCGTAC	58.945	45.455	5.81	0.00	35.16	3.67
94	95	3.374220	ACTGACACGTTTCAATCCGTA	57.626	42.857	5.81	0.00	35.16	4.02
95	96	2.234300	ACTGACACGTTTCAATCCGT	57.766	45.000	5.81	0.00	37.90	4.69
96	97	4.860352	TGTATACTGACACGTTTCAATCCG	59.140	41.667	5.81	0.00	0.00	4.18
97	98	6.903883	ATGTATACTGACACGTTTCAATCC	57.096	37.500	5.81	0.00	30.52	3.01
98	99	8.440059	TCAAATGTATACTGACACGTTTCAATC	58.560	33.333	5.81	0.00	32.84	2.67
99	100	8.317891	TCAAATGTATACTGACACGTTTCAAT	57.682	30.769	5.81	0.00	32.84	2.57
100	101	7.716768	TCAAATGTATACTGACACGTTTCAA	57.283	32.000	5.81	0.00	32.84	2.69
136	137	1.285078	GTGCCCCCTCCAGTTCTAATT	59.715	52.381	0.00	0.00	0.00	1.40
137	138	0.919710	GTGCCCCCTCCAGTTCTAAT	59.080	55.000	0.00	0.00	0.00	1.73
313	369	1.176527	CACGGCAGTCAATTTGGGAT	58.823	50.000	0.00	0.00	0.00	3.85
381	3396	2.403252	TTCAGAAGGGGAAAGCGATC	57.597	50.000	0.00	0.00	0.00	3.69
441	3458	2.290323	GGAGGTGACATTGGCTAACTGT	60.290	50.000	0.00	0.00	0.00	3.55
442	3459	2.026822	AGGAGGTGACATTGGCTAACTG	60.027	50.000	0.00	0.00	0.00	3.16
653	3836	5.759059	AGATTTTTGCTGATGAGATGGGTA	58.241	37.500	0.00	0.00	0.00	3.69
673	3862	3.071457	TCTCTCTCTCTCGATGCAGAGAT	59.929	47.826	15.55	0.00	46.37	2.75
923	4112	5.103728	TCTCTCTCTCTCTCTCTCTCTCTCT	60.104	48.000	0.00	0.00	0.00	3.10
924	4113	5.136828	TCTCTCTCTCTCTCTCTCTCTCTC	58.863	50.000	0.00	0.00	0.00	3.20
925	4114	5.103728	TCTCTCTCTCTCTCTCTCTCTCTCT	60.104	48.000	0.00	0.00	0.00	3.10
926	4115	5.136828	TCTCTCTCTCTCTCTCTCTCTCTC	58.863	50.000	0.00	0.00	0.00	3.20
927	4116	5.136068	TCTCTCTCTCTCTCTCTCTCTCT	57.864	47.826	0.00	0.00	0.00	3.10
928	4117	4.892934	ACTCTCTCTCTCTCTCTCTCTCTC	59.107	50.000	0.00	0.00	0.00	3.20
929	4118	4.877773	ACTCTCTCTCTCTCTCTCTCTCT	58.122	47.826	0.00	0.00	0.00	3.10
930	4119	5.594725	TGTACTCTCTCTCTCTCTCTCTCTC	59.405	48.000	0.00	0.00	0.00	3.20
931	4120	5.519808	TGTACTCTCTCTCTCTCTCTCTCT	58.480	45.833	0.00	0.00	0.00	3.10
932	4121	5.854010	TGTACTCTCTCTCTCTCTCTCTC	57.146	47.826	0.00	0.00	0.00	3.20
933	4122	5.721960	AGTTGTACTCTCTCTCTCTCTCTCT	59.278	44.000	0.00	0.00	0.00	3.10
934	4123	5.978814	AGTTGTACTCTCTCTCTCTCTCTC	58.021	45.833	0.00	0.00	0.00	3.20
935	4124	5.483937	TGAGTTGTACTCTCTCTCTCTCTCT	59.516	44.000	15.60	0.00	45.27	3.10
936	4125	5.730550	TGAGTTGTACTCTCTCTCTCTCTC	58.269	45.833	15.60	0.00	45.27	3.20
937	4126	5.755409	TGAGTTGTACTCTCTCTCTCTCT	57.245	43.478	15.60	0.00	45.27	3.10
938	4127	6.653320	TCTTTGAGTTGTACTCTCTCTCTCTC	59.347	42.308	15.60	0.00	45.27	3.20
939	4128	6.539173	TCTTTGAGTTGTACTCTCTCTCTCT	58.461	40.000	15.60	0.00	45.27	3.10
940	4129	6.811253	TCTTTGAGTTGTACTCTCTCTCTC	57.189	41.667	15.60	0.00	45.27	3.20
941	4130	7.589958	TTTCTTTGAGTTGTACTCTCTCTCT	57.410	36.000	15.60	0.00	45.27	3.10
942	4131	8.825667	ATTTTCTTTGAGTTGTACTCTCTCTC	57.174	34.615	15.60	7.75	45.27	3.20
943	4132	8.424918	TGATTTTCTTTGAGTTGTACTCTCTCT	58.575	33.333	15.60	0.00	45.27	3.10
944	4133	8.594881	TGATTTTCTTTGAGTTGTACTCTCTC	57.405	34.615	15.60	10.91	45.27	3.20
945	4134	8.424918	TCTGATTTTCTTTGAGTTGTACTCTCT	58.575	33.333	15.60	3.38	45.27	3.10
946	4135	8.594881	TCTGATTTTCTTTGAGTTGTACTCTC	57.405	34.615	8.18	10.28	45.27	3.20
1313	5002	2.445427	TGCACCCAAATGGAGTACATG	58.555	47.619	0.00	0.00	40.44	3.21
1370	5059	0.317938	GCTGTAGTCGTATCCCTGCG	60.318	60.000	0.00	0.00	0.00	5.18
1377	5066	1.783031	CGCCGGAGCTGTAGTCGTAT	61.783	60.000	5.05	0.00	36.60	3.06
1602	5291	0.923403	CGATGTACACGGTGAGCATG	59.077	55.000	16.29	9.07	0.00	4.06
1604	5293	0.815095	ATCGATGTACACGGTGAGCA	59.185	50.000	16.29	12.81	0.00	4.26
1731	5420	3.367910	GCTTCTTGAAGATCCTGACGTCT	60.368	47.826	17.92	0.00	0.00	4.18
1818	5516	1.970640	GGAGGCAAAGAACCAACCAAT	59.029	47.619	0.00	0.00	0.00	3.16
1921	5621	8.345565	ACATCAGTGAAACAAAGTTGTAGATTC	58.654	33.333	0.00	0.00	41.31	2.52
1931	5631	8.075574	TGCTAACAATACATCAGTGAAACAAAG	58.924	33.333	0.00	0.00	41.43	2.77
1941	5641	5.559608	CGCCAAGATGCTAACAATACATCAG	60.560	44.000	5.15	0.00	42.12	2.90
2040	5740	2.814280	AAGGACTACACTGTTCACCG	57.186	50.000	0.00	0.00	0.00	4.94
2041	5741	6.930667	TTTTTAAGGACTACACTGTTCACC	57.069	37.500	0.00	0.00	0.00	4.02
2042	5742	8.219105	CGTATTTTTAAGGACTACACTGTTCAC	58.781	37.037	0.00	0.00	0.00	3.18
2043	5743	7.385752	CCGTATTTTTAAGGACTACACTGTTCA	59.614	37.037	0.00	0.00	0.00	3.18
2044	5744	7.386025	ACCGTATTTTTAAGGACTACACTGTTC	59.614	37.037	0.00	0.00	0.00	3.18
2045	5745	7.172019	CACCGTATTTTTAAGGACTACACTGTT	59.828	37.037	0.00	0.00	0.00	3.16
2046	5746	6.647895	CACCGTATTTTTAAGGACTACACTGT	59.352	38.462	0.00	0.00	0.00	3.55
2047	5747	6.869913	TCACCGTATTTTTAAGGACTACACTG	59.130	38.462	0.00	0.00	0.00	3.66
2048	5748	6.996509	TCACCGTATTTTTAAGGACTACACT	58.003	36.000	0.00	0.00	0.00	3.55
2049	5749	7.171337	TGTTCACCGTATTTTTAAGGACTACAC	59.829	37.037	0.00	0.00	0.00	2.90
2050	5750	7.215789	TGTTCACCGTATTTTTAAGGACTACA	58.784	34.615	0.00	0.00	0.00	2.74
2051	5751	7.386025	ACTGTTCACCGTATTTTTAAGGACTAC	59.614	37.037	0.00	0.00	0.00	2.73
2052	5752	7.444299	ACTGTTCACCGTATTTTTAAGGACTA	58.556	34.615	0.00	0.00	0.00	2.59
2053	5753	6.293698	ACTGTTCACCGTATTTTTAAGGACT	58.706	36.000	0.00	0.00	0.00	3.85
2054	5754	6.549912	ACTGTTCACCGTATTTTTAAGGAC	57.450	37.500	0.00	0.00	0.00	3.85
2055	5755	9.590451	CTATACTGTTCACCGTATTTTTAAGGA	57.410	33.333	0.08	0.00	0.00	3.36
2056	5756	9.374838	ACTATACTGTTCACCGTATTTTTAAGG	57.625	33.333	0.08	0.00	0.00	2.69
2058	5758	8.658609	GCACTATACTGTTCACCGTATTTTTAA	58.341	33.333	0.08	0.00	0.00	1.52
2059	5759	8.036575	AGCACTATACTGTTCACCGTATTTTTA	58.963	33.333	0.08	0.00	0.00	1.52
2060	5760	6.877322	AGCACTATACTGTTCACCGTATTTTT	59.123	34.615	0.08	0.00	0.00	1.94
2061	5761	6.403878	AGCACTATACTGTTCACCGTATTTT	58.596	36.000	0.08	0.00	0.00	1.82
2062	5762	5.974108	AGCACTATACTGTTCACCGTATTT	58.026	37.500	0.08	0.00	0.00	1.40
2063	5763	5.593679	AGCACTATACTGTTCACCGTATT	57.406	39.130	0.08	0.00	0.00	1.89
2064	5764	5.593679	AAGCACTATACTGTTCACCGTAT	57.406	39.130	0.49	0.49	0.00	3.06
2065	5765	6.513806	TTAAGCACTATACTGTTCACCGTA	57.486	37.500	0.00	0.00	0.00	4.02
2066	5766	3.955650	AAGCACTATACTGTTCACCGT	57.044	42.857	0.00	0.00	0.00	4.83
2154	5859	4.385447	CGGATGTTCAAATTTTGCACGAAT	59.615	37.500	4.19	0.00	28.99	3.34
2278	5994	2.719046	CGTGCAAAATTCCGTGAAGTTC	59.281	45.455	0.00	0.00	28.39	3.01
2405	6129	0.533308	AACTGAAGCGGCGTTTGGTA	60.533	50.000	15.15	0.00	0.00	3.25
2537	6262	2.460757	ATGTGGCAGGACAAAAATGC	57.539	45.000	0.00	0.00	39.25	3.56
2538	6263	7.437793	AATAAAATGTGGCAGGACAAAAATG	57.562	32.000	0.00	0.00	0.00	2.32
2649	6376	2.108952	AGAGCCTGACTTGGGAAATGTT	59.891	45.455	0.00	0.00	0.00	2.71
2661	6388	2.541556	GATGTACGGAAAGAGCCTGAC	58.458	52.381	0.00	0.00	0.00	3.51
2717	6446	6.150474	GGCAGTAAACAAAATAGGTGAAGCTA	59.850	38.462	0.00	0.00	0.00	3.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.